Citrus Sinensis ID: 021440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTPQRNIKDCCSALAASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPEEPNVDGKL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccccccHHHHHHHHccEEEEEEEcccHHHHHHHHHHccccccEEEEEEcccccEEEEEccccccHHHHHHHHHHHHccccccccHHHHHHccccccccccHHHHHHHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHccccHHHHccccHHHHHHHHHHcccEEEEEEcccccccHHHHcHHHcccHHHHHHHHHcEEEEEEEcccHcHHHEEEEEccccccEEEEEccccccEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAvneadatappsysalaenansrpdqnlvtggqdggyevcvpphakdlfyndasttdtsHDILAslyrppfhvmfngsfekAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWqeyddtsegwkvcsfynmdsipavlvidpitgqkicswcgminpqplgemllpfmdrsprKCATIIIErqrassttpqrnIKDCCSALAASMETIKdtigvspsdadvtsadkeatsttqgtaypalpeepnvdgkl
Flexible Loop (DISEMBL)
mesesidkesrISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIErqrassttpqrnIKDCCSALAASMETIKDTigvspsdadvtSADKeatsttqgtaypalpeepnvdgkl
Low Complexity Region (SEG)
MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTPQRNIKDCCSALAASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPEEPNVDGKL
Disordered region (IsUnstruct)
*************SFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEA***************************QDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIE************IKDCCSALAA***********************************************
Disordered Region (DISOPRED)
**********RISSFLEIAVGASGVTAIECLQATSWKLDEAILL********************************************************************YRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD*********************************************************************************
Disordered Region (DISEMBL)
***********ISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQ*********NIKDCCSALAASMETIKDTIGVSP*****************GTAYPALPE********
Disordered Region (DISPRO)
******DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE*******************************************************HDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK****************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRKCATIIIERQRASSTTPQRNIKDCCSALAASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPEEPNVDGKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q5REY7	489	UBX domain-containing pro	yes	no	0.451	0.288	0.393	6e-28
O94888	489	UBX domain-containing pro	yes	no	0.451	0.288	0.393	6e-28
Q6P5G6	467	UBX domain-containing pro	yes	no	0.375	0.250	0.444	7e-28
O14048	427	UBX domain-containing pro	yes	no	0.355	0.259	0.378	6e-21
Q55BU7	503	UBX domain-containing pro	yes	no	0.391	0.242	0.344	7e-19
Q06682	500	UBX domain-containing pro	yes	no	0.371	0.232	0.344	1e-17

>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 4/145 (2%)

Query: 69  RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
           RP +++  G +D   E       ++    +    D     LA L+RPP  +M  GSFE A
Sbjct: 102 RPARSIFDGFRDFQTETI----RQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETA 157

Query: 129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
           K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct: 158 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 217

Query: 189 SFYNMDSIPAVLVIDPITGQKICSW 213
            FY +   P V ++DP TGQK+  W
Sbjct: 218 QFYKLGDFPYVSILDPRTGQKLVEW 242

Pongo abelii (taxid: 9601)

>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2

 Score =  124 bits (312), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 4/145 (2%)

Query: 69  RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
           RP +++  G +D   E       ++    +    D     LA L+RPP  +M  GSFE A
Sbjct: 102 RPARSIFDGFRDFQTETI----RQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETA 157

Query: 129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
           K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct: 158 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 217

Query: 189 SFYNMDSIPAVLVIDPITGQKICSW 213
            FY +   P V ++DP TGQK+  W
Sbjct: 218 QFYKLGDFPYVSILDPRTGQKLVEW 242

Homo sapiens (taxid: 9606)

>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 71/117 (60%)

Query: 97  NDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNR 156
            +    D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNR
Sbjct: 104 RNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNR 163

Query: 157 DTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW 213
           D W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W
Sbjct: 164 DVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 220

Mus musculus (taxid: 10090)

>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 69/111 (62%)

Query: 109 LASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII 168
           LA L+RPP+ ++ N S ++A+  A +Q +W+LVNLQ++  F   +LNRD W +E+V ++I
Sbjct: 145 LAKLFRPPYDIISNLSLDEARIEASSQKRWILVNLQTSTSFECQVLNRDLWKDESVKEVI 204

Query: 169 SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINP 219
             +F+F Q  DD   G +   FY + S P + ++DP TG+++  W     P
Sbjct: 205 RAHFLFLQLLDDEEPGMEFKRFYPVRSTPHIAILDPRTGERVKEWSKSFTP 255

Involved in CDC48-dependent protein degradation through the ubiquitin/proteasome pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55BU7|UBXN7_DICDI UBX domain-containing protein 7 homolog OS=Dictyostelium discoideum GN=ubxd7 PE=4 SV=1

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 70/122 (57%)

Query: 109 LASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII 168
           L+ L++PP  ++  G+F++ K  A  +  ++LVN+Q  +EF    LNRDTW N+ + ++I
Sbjct: 134 LSELFKPPLDILTFGTFDEIKKMAEQKKYFVLVNIQDVQEFDCQKLNRDTWSNKDLKELI 193

Query: 169 SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP 228
             NF+FWQ      EG      Y +   P + +IDP TGQK+    G I+ + + + L+ 
Sbjct: 194 GENFVFWQVNSANPEGKWFTQIYPVFKFPYIAIIDPRTGQKLQDMTGFIDAEEMAQYLVT 253

Query: 229 FM 230
           F+
Sbjct: 254 FL 255

Dictyostelium discoideum (taxid: 44689)

>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 109 LASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII 168
           LA L+RPPF +M     + AK  A A+ KW+++N+Q +  F    LNRD W +  V  II
Sbjct: 208 LALLFRPPFSIMSKLDLDAAKQKARAKQKWIMINIQDSGIFQCQALNRDLWSSRPVKTII 267

Query: 169 SVNFIFWQEYDDTSEGWKVCSFY---NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEM 225
             NF+F Q   ++        FY   N D +P + ++DPITG+++  W  ++   P+ E 
Sbjct: 268 KENFVFLQYQYESRNAQPYLQFYHLNNKDDLPHIAILDPITGERVKQWNRVV---PIPEQ 324

Query: 226 LL 227
            +
Sbjct: 325 FI 326

Involved in CDC48-dependent protein degradation through the ubiquitin/proteasome pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
224111366	444	predicted protein [Populus trichocarpa]	0.974	0.684	0.494	4e-82
359473684	456	PREDICTED: UBX domain-containing protein	0.903	0.618	0.495	4e-76
359473686	447	PREDICTED: UBX domain-containing protein	0.903	0.630	0.502	1e-75
255561727	452	UBX domain-containing protein, putative	0.971	0.670	0.458	2e-73
449445306	450	PREDICTED: UBX domain-containing protein	0.977	0.677	0.461	1e-72
224099647	309	predicted protein [Populus trichocarpa]	0.798	0.805	0.515	2e-72
357517375	461	UBX domain-containing protein [Medicago	0.961	0.650	0.434	6e-70
356559124	456	PREDICTED: UBX domain-containing protein	0.977	0.668	0.437	2e-69
356559126	443	PREDICTED: UBX domain-containing protein	0.977	0.688	0.462	3e-69
356559122	467	PREDICTED: UBX domain-containing protein	0.977	0.653	0.433	1e-68

>gi|224111366|ref|XP_002315828.1| predicted protein [Populus trichocarpa] gi|222864868|gb|EEF01999.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 178/360 (49%), Positives = 217/360 (60%), Gaps = 56/360 (15%)

Query: 7   DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENA 66
           D++S +SSFLEIAVG +  TA + LQATSWKL++AI LF+  NE  A A  S+    E  
Sbjct: 9   DEQSMVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGAVASASHPPPTETW 68

Query: 67  NSRPDQNLVTGGQDGGYEVCVP-PHAKDLFYNDA-------------------------- 99
               +   V  G   G EV  P P  +D  Y+DA                          
Sbjct: 69  PEDLENEKV--GHSDGEEVRAPLPVVRDTLYDDAMLYGASRTGYPPHEASSLIAFRNFDE 126

Query: 100 ---------------STTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQ 144
                          STTD S D LASLYRPPFH+MF+GSFEKAK AA  QDKWLLVNLQ
Sbjct: 127 EMKHPGVWESDQGSTSTTDNSRDNLASLYRPPFHLMFHGSFEKAKGAASVQDKWLLVNLQ 186

Query: 145 STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP 204
           STKEFSS MLNRDTW NEAV+Q IS NFIFWQ YDDTSEG KVC++Y +DSIP VL+IDP
Sbjct: 187 STKEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGQKVCTYYKLDSIPVVLIIDP 246

Query: 205 ITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTTPQRNI---KDCC 260
           ITGQK+ SW GM+ P+ L E L+PFMD  PR    T+  +RQR SS TP ++    ++  
Sbjct: 247 ITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDHHKTLSHKRQRGSSLTPPKSKEEDEEVL 306

Query: 261 SALAASMETIKDTIGVSPSDADVTSADKEATSTTQGT--------AYPALPEEPNVDGKL 312
            ALAASME++KD+  ++ +  D+ S DK+  ST +G          YP LPEEP+ D  L
Sbjct: 307 RALAASMESMKDSSVIASNKKDIASNDKDDASTAKGEEKCSTKTLTYPPLPEEPSGDKSL 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473684|ref|XP_003631347.1| PREDICTED: UBX domain-containing protein 2-like isoform 2 [Vitis vinifera] gi|297738308|emb|CBI27509.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 174/351 (49%), Positives = 206/351 (58%), Gaps = 69/351 (19%)

Query: 5   SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAE 64
           S DK+S +SSFLEIAVG S  TA + LQATSWKL+EAI LF+  NE    A  SYS   E
Sbjct: 6   SADKQSMVSSFLEIAVGQSADTARQFLQATSWKLEEAIQLFYVGNEGGTMAASSYSPPIE 65

Query: 65  NANSRPDQ------------NLVTGGQDGGYEVCVP-PHAKDLFYNDA------------ 99
           N +  PDQ            N+V   QD G EV  P P  ++  Y+DA            
Sbjct: 66  NISPLPDQSSSGSRKDIENENVV---QDDGDEVRPPLPVIREALYDDAMLYGVSRGGYPS 122

Query: 100 -----------------------------STTDTSHDILASLYRPPFHVMFNGSFEKAKD 130
                                        ST + S D LASLYRPPF +M +G FEKAK 
Sbjct: 123 HEASSLVAFRNFDDEMKRPGIWESEKGATSTAENSRDNLASLYRPPFALMHHGPFEKAKV 182

Query: 131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF 190
           AA  QDKWLLVNLQST EFSS MLNRDTW NEAV+Q IS NFIFWQ YDDTSEG KVC++
Sbjct: 183 AAAGQDKWLLVNLQSTTEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGKKVCTY 242

Query: 191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASS 249
           Y +DSIP VLVIDPITGQK+ SWCGMI P+ L E LLPFMD  P+    T+  +R R SS
Sbjct: 243 YKLDSIPVVLVIDPITGQKMRSWCGMIQPERLLEDLLPFMDGGPKDHHVTLSHKRPRESS 302

Query: 250 TTPQRNIK-----------DCCSALAASMETIKDTIGVSPSDADVTSADKE 289
            TP + I+           +   ALAASM ++KD  G++  + DVT+ DK+
Sbjct: 303 LTPPQKIQVAADETNEEDEEVQLALAASMASMKDPSGLTSKEKDVTTTDKK 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473686|ref|XP_002274120.2| PREDICTED: UBX domain-containing protein 2-like isoform 1 [Vitis vinifera]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 172/342 (50%), Positives = 205/342 (59%), Gaps = 60/342 (17%)

Query: 5   SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAE 64
           S DK+S +SSFLEIAVG S  TA + LQATSWKL+EAI LF+  NE    A  SYS   E
Sbjct: 6   SADKQSMVSSFLEIAVGQSADTARQFLQATSWKLEEAIQLFYVGNEGGTMAASSYSPPIE 65

Query: 65  NANSRPD---QNLVTGGQDGGYEVCVP-PHAKDLFYNDA--------------------- 99
           N +   D   +N+V   QD G EV  P P  ++  Y+DA                     
Sbjct: 66  NISPLKDIENENVV---QDDGDEVRPPLPVIREALYDDAMLYGVSRGGYPSHEASSLVAF 122

Query: 100 --------------------STTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWL 139
                               ST + S D LASLYRPPF +M +G FEKAK AA  QDKWL
Sbjct: 123 RNFDDEMKRPGIWESEKGATSTAENSRDNLASLYRPPFALMHHGPFEKAKVAAAGQDKWL 182

Query: 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199
           LVNLQST EFSS MLNRDTW NEAV+Q IS NFIFWQ YDDTSEG KVC++Y +DSIP V
Sbjct: 183 LVNLQSTTEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV 242

Query: 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTTPQRNIK- 257
           LVIDPITGQK+ SWCGMI P+ L E LLPFMD  P+    T+  +R R SS TP + I+ 
Sbjct: 243 LVIDPITGQKMRSWCGMIQPERLLEDLLPFMDGGPKDHHVTLSHKRPRESSLTPPQKIQV 302

Query: 258 ----------DCCSALAASMETIKDTIGVSPSDADVTSADKE 289
                     +   ALAASM ++KD  G++  + DVT+ DK+
Sbjct: 303 AADETNEEDEEVQLALAASMASMKDPSGLTSKEKDVTTTDKK 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561727|ref|XP_002521873.1| UBX domain-containing protein, putative [Ricinus communis] gi|223538911|gb|EEF40509.1| UBX domain-containing protein, putative [Ricinus communis]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/364 (45%), Positives = 208/364 (57%), Gaps = 61/364 (16%)

Query: 5   SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAE 64
           S +++S ++ FLEIA G +  TAI+ LQATSWKL+EA+ LF+  NE    A  S S   E
Sbjct: 6   SDNEQSMVACFLEIAAGQTADTAIQFLQATSWKLEEALQLFYVGNETGQVASASQSPPLE 65

Query: 65  NANSRPDQNLVTGGQDGGYEVCVP-PHAKDLFYNDA------------------------ 99
           NA    D      GQ+   +V  P P  +D  Y+DA                        
Sbjct: 66  NAGGLKDNENEKIGQNSADDVRPPLPVVRDTLYDDAMFYRTSRTGYPPHESSSLVAFRNF 125

Query: 100 -----------------STTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVN 142
                            ST DT+ D LASLYRPP H+MF+GSFEKAK  A  QDKWLLVN
Sbjct: 126 DEEMKRPGVWESDQGATSTADTARDNLASLYRPPLHLMFHGSFEKAKGVASVQDKWLLVN 185

Query: 143 LQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI 202
           +QSTKEFSS MLNRDTW NEAV+Q IS NFIFWQ YDDTS G KVC++Y +DSIP VLVI
Sbjct: 186 IQSTKEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSGGKKVCTYYKLDSIPVVLVI 245

Query: 203 DPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTTPQRN------ 255
           DPITGQK+ +W GM+ P+ L E L+P+MD  PR    T+  +R R SS   Q+N      
Sbjct: 246 DPITGQKMRAWSGMVQPECLLEDLVPYMDGGPRDHHVTLSHKRPRGSSQALQKNKGKLGL 305

Query: 256 -----------IKDCCSALAASMETIKDTIGVSPSDADVTSADK-EATSTTQGTAYPALP 303
                       ++   ALAASME +KD+  +     +  SAD+ E + +T+  AYP LP
Sbjct: 306 LPAFTNETNEEDEEMLRALAASMEGMKDSNRMPSDGKEAASADEDEKSCSTKILAYPPLP 365

Query: 304 EEPN 307
           EEP 
Sbjct: 366 EEPK 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445306|ref|XP_004140414.1| PREDICTED: UBX domain-containing protein 7-like [Cucumis sativus]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/368 (46%), Positives = 208/368 (56%), Gaps = 63/368 (17%)

Query: 5   SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALA- 63
           + DK+S +SSFLE+AVG +  TA + LQATSWKL++AI LF+  NE     PP   +   
Sbjct: 7   ATDKQSMVSSFLEVAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGVVGPPPVPSPPS 66

Query: 64  --ENANSRPDQNLVTGGQDGG------YEVCVPPHA---KDLFYNDA------------- 99
             E  NS  D      G+  G      YE  V P     ++  Y+DA             
Sbjct: 67  TNEQINSSTDHISNESGKHAGPGTFGQYEDEVRPPLPVIREALYDDAMLYGTTMGYLPNE 126

Query: 100 ---------------------------STTDTSHDILASLYRPPFHVMFNGSFEKAKDAA 132
                                      ST+  S D LASLYRPP+H+MF GSFEKAK AA
Sbjct: 127 SGSSIGFRNLQNEVKHHDVWQSGEGAASTSGNSRDNLASLYRPPYHLMFTGSFEKAKGAA 186

Query: 133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN 192
             QDKWL+VNLQSTKEFSS MLNRDTW NEAVSQ IS NFIFWQ YDD++EG KVC++Y 
Sbjct: 187 CVQDKWLIVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDSTEGQKVCTYYK 246

Query: 193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTT 251
           ++SIPAVLVIDPITGQK+ SW GM+ P+ L E LLPFMD  P+    T+  +R R SS T
Sbjct: 247 LESIPAVLVIDPITGQKMHSWFGMVQPERLLEDLLPFMDGGPKDHHVTLSHKRPRESSLT 306

Query: 252 PQRNIKDCC-------SALAASMETIKDTIGVSPSDADVTSADKEATSTTQGTAYPALPE 304
           P +  +           ALA S+E +K+ + +S  D D   A+KE         YP LPE
Sbjct: 307 PPKVREVEYEEDEEVQRALAVSLEGMKEAVKLSSEDKDTKVAEKEEEKC---PTYPPLPE 363

Query: 305 EPNVDGKL 312
           EP  D KL
Sbjct: 364 EPKGDRKL 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099647|ref|XP_002311564.1| predicted protein [Populus trichocarpa] gi|222851384|gb|EEE88931.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/297 (51%), Positives = 180/297 (60%), Gaps = 48/297 (16%)

Query: 7   DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENA 66
           D++S +SSFLEIAVG +  TA + LQATSWKL++AI LF+  NE    A  S+    E  
Sbjct: 11  DEQSMVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGVVASASHPPQTETR 70

Query: 67  NSRPDQNLVTGGQD-----GGYEVCVP-PHAKDLFYNDA--------------------- 99
               +  L   G +     GG EV  P P  +D  Y+DA                     
Sbjct: 71  TDVHESGLKDFGNENVGPGGGEEVRAPLPVVRDTLYDDAMLYGASRMGHPPHEASSLIAF 130

Query: 100 --------------------STTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWL 139
                               ST D   D LASLYRPPFH+MF+GSFEKAKDAA  QDKWL
Sbjct: 131 RNFDEEMKHSGVWESDQGSTSTIDNPRDNLASLYRPPFHLMFHGSFEKAKDAASVQDKWL 190

Query: 140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV 199
           LVNLQSTKEFSS MLNRDTW NEAV+Q IS NFIFWQ YDDTSEG KVC++Y +DSIP V
Sbjct: 191 LVNLQSTKEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGRKVCTYYKLDSIPVV 250

Query: 200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTTPQRN 255
           LVIDPITGQK+ SW GM+ P+ L E L+PFMD  PR    T+  +R R SS TPQ++
Sbjct: 251 LVIDPITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDHHKTLSHKRLRGSSLTPQKS 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517375|ref|XP_003628976.1| UBX domain-containing protein [Medicago truncatula] gi|358345084|ref|XP_003636613.1| UBX domain-containing protein [Medicago truncatula] gi|355502548|gb|AES83751.1| UBX domain-containing protein [Medicago truncatula] gi|355522998|gb|AET03452.1| UBX domain-containing protein [Medicago truncatula]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 214/380 (56%), Gaps = 80/380 (21%)

Query: 7   DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADAT---APPSYSALA 63
           D+++ ++SFLE+A G +  TA + LQATSWKL+EA+ LF   +E  A    AP S++   
Sbjct: 9   DQQTLVTSFLEVAQGQTAATARQFLQATSWKLEEALQLFLIGSETGAVPVPAPASFTPPL 68

Query: 64  ENANSRPDQNLV------TGGQDG----GYEVCVP-PHAKDLFYND-------------- 98
           ENA+   DQ+ +      T  Q G    G EV  P P  ++  Y++              
Sbjct: 69  ENADGWIDQSHLSETRTDTANQSGVVNEGDEVRAPLPVIRETLYDNVLLYGGSRLGHLPQ 128

Query: 99  ---------------------------ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDA 131
                                      AST ++S D LASLYRPPFH+MF GSF+KAK A
Sbjct: 129 EPNSLIAFRNFEQETRRPGVWEPEQGAASTAESSQDTLASLYRPPFHLMFTGSFDKAKSA 188

Query: 132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFY 191
           A  QDKWL+VN+QSTKEFSS MLNRDTW NEAVSQ I  NFIFWQ YDDT+EG KVC++Y
Sbjct: 189 ASMQDKWLMVNIQSTKEFSSHMLNRDTWANEAVSQTIKTNFIFWQVYDDTTEGKKVCTYY 248

Query: 192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASST 250
            +DSIP VL+IDPITGQK+ +W GM+ P  L E LLPF D  P+    T+  +R R SS+
Sbjct: 249 RLDSIPVVLIIDPITGQKMRAWGGMVQPDSLLEGLLPFFDAGPKDHHNTLSHKRPRGSSS 308

Query: 251 TPQRNI-----------KDCCSALAASMETIKDTIGVSPSDADVTSADKEAT--STTQGT 297
            P+              ++   ALAAS+E++K++  ++  D      DKEA      Q T
Sbjct: 309 PPKPKATLDSDANKEEDEEVQRALAASLESVKESSEMAEGD------DKEANVAGNVQET 362

Query: 298 -----AYPALPEEPNVDGKL 312
                AYP LPEEP  +  L
Sbjct: 363 ALPRPAYPTLPEEPKAERNL 382

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559124|ref|XP_003547851.1| PREDICTED: UBX domain-containing protein 7-like isoform 2 [Glycine max]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 205/370 (55%), Gaps = 65/370 (17%)

Query: 7   DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEA--------------- 51
           +++S +SSFLE+A G +  TA + LQATSWKL+EA+ LF   +E                
Sbjct: 9   EQQSMVSSFLEVAQGQTAETARQFLQATSWKLEEALQLFLIGSEGGAVPLPVPPPPLLHT 68

Query: 52  -----DATAPPSYSALAENANSRP----------DQNLVTGGQDGGYEVCVP-------- 88
                DA A      L +    RP          D  ++ G    G+    P        
Sbjct: 69  PPLENDAAAASESIGLNDAEEVRPPLPVIRETLYDDAMLYGASRAGHRSHEPSSLVAFRN 128

Query: 89  -------PHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLV 141
                  P   +     AST + S D LASLYRPPFH+MFNG+F+KAKDAA  Q+KWLLV
Sbjct: 129 FEEEMRQPGVWESEQGAASTAEASRDNLASLYRPPFHLMFNGAFDKAKDAASMQNKWLLV 188

Query: 142 NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV 201
           N+QSTKEFSS MLNRDTW NEAVSQ IS N IFWQ YDDT+EG KVC++Y +DSIP VLV
Sbjct: 189 NIQSTKEFSSHMLNRDTWANEAVSQTISTNCIFWQVYDDTTEGRKVCTYYRLDSIPVVLV 248

Query: 202 IDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTTP-------- 252
           IDPITGQK+ SW GM+ P+ L E LL F+D  P+    T+  +R R SS+ P        
Sbjct: 249 IDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHHITMSHKRPRGSSSPPKSKGMLLL 308

Query: 253 -------QRNIKDCCSALAASMETIKDTI---GVSPSDADVTSADKEATSTTQGTAYPAL 302
                  +   ++   ALAASME++K++    G    DADV    +E T   +   YP L
Sbjct: 309 SIYIPGNKEEYEEVQRALAASMESMKESTAMAGRDNKDADVAVNGQE-TPMAKRPTYPTL 367

Query: 303 PEEPNVDGKL 312
           PEEP V+  L
Sbjct: 368 PEEPKVERNL 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559126|ref|XP_003547852.1| PREDICTED: UBX domain-containing protein 7-like isoform 3 [Glycine max]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/357 (46%), Positives = 210/357 (58%), Gaps = 52/357 (14%)

Query: 7   DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALA--- 63
           +++S +SSFLE+A G +  TA + LQATSWKL+EA+ LF   +E  A   P         
Sbjct: 9   EQQSMVSSFLEVAQGQTAETARQFLQATSWKLEEALQLFLIGSEGGAVPLPVPPPPLLHT 68

Query: 64  ---ENANSRPDQNLVTG------------GQDGGYEVCVP-PHAKDLFYNDA-------- 99
              EN +S  DQ  ++             G +   EV  P P  ++  Y+DA        
Sbjct: 69  PPLENVDSWTDQQPLSEPRKDAAAASESIGLNDAEEVRPPLPVIRETLYDDAMLYGYEMR 128

Query: 100 ------------STTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTK 147
                       ST + S D LASLYRPPFH+MFNG+F+KAKDAA  Q+KWLLVN+QSTK
Sbjct: 129 QPGVWESEQGAASTAEASRDNLASLYRPPFHLMFNGAFDKAKDAASMQNKWLLVNIQSTK 188

Query: 148 EFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG 207
           EFSS MLNRDTW NEAVSQ IS N IFWQ YDDT+EG KVC++Y +DSIP VLVIDPITG
Sbjct: 189 EFSSHMLNRDTWANEAVSQTISTNCIFWQVYDDTTEGRKVCTYYRLDSIPVVLVIDPITG 248

Query: 208 QKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQRASSTTP--------QRNIKD 258
           QK+ SW GM+ P+ L E LL F+D  P+    T+  +R R SS+ P        +   ++
Sbjct: 249 QKMRSWIGMVQPESLLEGLLAFLDAGPKDHHITMSHKRPRGSSSPPKSKESDENKEEYEE 308

Query: 259 CCSALAASMETIKDTI---GVSPSDADVTSADKEATSTTQGTAYPALPEEPNVDGKL 312
              ALAASME++K++    G    DADV    +E T   +   YP LPEEP V+  L
Sbjct: 309 VQRALAASMESMKESTAMAGRDNKDADVAVNGQE-TPMAKRPTYPTLPEEPKVERNL 364

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559122|ref|XP_003547850.1| PREDICTED: UBX domain-containing protein 7-like isoform 1 [Glycine max]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/381 (43%), Positives = 210/381 (55%), Gaps = 76/381 (19%)

Query: 7   DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALA--- 63
           +++S +SSFLE+A G +  TA + LQATSWKL+EA+ LF   +E  A   P         
Sbjct: 9   EQQSMVSSFLEVAQGQTAETARQFLQATSWKLEEALQLFLIGSEGGAVPLPVPPPPLLHT 68

Query: 64  ---ENANSRPDQNLVTG------------GQDGGYEVCVP-PHAKDLFYNDA-------- 99
              EN +S  DQ  ++             G +   EV  P P  ++  Y+DA        
Sbjct: 69  PPLENVDSWTDQQPLSEPRKDAAAASESIGLNDAEEVRPPLPVIRETLYDDAMLYGASRA 128

Query: 100 ---------------------------------STTDTSHDILASLYRPPFHVMFNGSFE 126
                                            ST + S D LASLYRPPFH+MFNG+F+
Sbjct: 129 GHRSHEPSSLVAFRNFEEEMRQPGVWESEQGAASTAEASRDNLASLYRPPFHLMFNGAFD 188

Query: 127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWK 186
           KAKDAA  Q+KWLLVN+QSTKEFSS MLNRDTW NEAVSQ IS N IFWQ YDDT+EG K
Sbjct: 189 KAKDAASMQNKWLLVNIQSTKEFSSHMLNRDTWANEAVSQTISTNCIFWQVYDDTTEGRK 248

Query: 187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR-KCATIIIERQ 245
           VC++Y +DSIP VLVIDPITGQK+ SW GM+ P+ L E LL F+D  P+    T+  +R 
Sbjct: 249 VCTYYRLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHHITMSHKRP 308

Query: 246 RASSTTP-----------QRNIKDCCSALAASMETIKDTI---GVSPSDADVTSADKEAT 291
           R SS+ P           +   ++   ALAASME++K++    G    DADV    +E T
Sbjct: 309 RGSSSPPKSKALVESDENKEEYEEVQRALAASMESMKESTAMAGRDNKDADVAVNGQE-T 367

Query: 292 STTQGTAYPALPEEPNVDGKL 312
              +   YP LPEEP V+  L
Sbjct: 368 PMAKRPTYPTLPEEPKVERNL 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2204497	468	AT1G14570 "AT1G14570" [Arabido	0.660	0.440	0.506	7.8e-62
MGI|MGI:2146388	467	Ubxn7 "UBX domain protein 7" [	0.634	0.423	0.350	3.2e-27
ZFIN|ZDB-GENE-040704-8	505	ubxn7 "UBX domain protein 7" [	0.759	0.469	0.293	9.6e-27
UNIPROTKB|I3LQY9	476	UBXN7 "Uncharacterized protein	0.451	0.296	0.393	5.4e-26
UNIPROTKB|E2R9U7	489	UBXN7 "Uncharacterized protein	0.451	0.288	0.393	6.4e-26
UNIPROTKB|O94888	489	UBXN7 "UBX domain-containing p	0.451	0.288	0.393	6.4e-26
UNIPROTKB|E1BTX4	492	UBXN7 "Uncharacterized protein	0.451	0.286	0.393	6.6e-26
UNIPROTKB|F1MUA8	474	UBXN7 "Uncharacterized protein	0.451	0.297	0.386	1.5e-25
DICTYBASE|DDB_G0270358	503	DDB_G0270358 "ubiquitin intera	0.442	0.274	0.323	3.3e-21
CGD|CAL0001806	546	orf19.4430 [Candida albicans (	0.336	0.192	0.390	8.5e-20

TAIR|locus:2204497 AT1G14570 "AT1G14570" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 113/223 (50%), Positives = 145/223 (65%)

Query:    99 ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
             + +     D LASLYRPPFH+MF GSFE+AK  + +QDKWLLVNLQST EFSS MLNRDT
Sbjct:   161 SESASAPRDSLASLYRPPFHLMFQGSFEQAKTTSSSQDKWLLVNLQSTTEFSSHMLNRDT 220

Query:   159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218
             W N+AVSQ I  NFIFWQ YDDT+EG KVC++Y ++SIP VLVIDP TGQ++  W GM++
Sbjct:   221 WANDAVSQTIKANFIFWQVYDDTTEGRKVCTYYKLESIPVVLVIDPTTGQRMRMWTGMVD 280

Query:   219 PQPLGEMLLPFMDRSPRK-CATIIIERQRAS-STTPQRNIKDCCS----------ALAAS 266
             P+ L E L+PFMD  PR+  A++  +R R S S TP    K+  +          ALAAS
Sbjct:   281 PENLLEDLVPFMDGGPREHFASLSKKRPRGSFSLTPHSKPKEDVAKDEEEEELQRALAAS 340

Query:   267 METIKDTIGVSPSDADVTSADK---EATSTTQGTAYPALPEEP 306
             +E   + +  S  D      ++   EA ++     +P LPEEP
Sbjct:   341 LED--NNMKESSDDQSTIIPEEVAVEAVTSAVLPTFPPLPEEP 381

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

MGI|MGI:2146388 Ubxn7 "UBX domain protein 7" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 73/208 (35%), Positives = 105/208 (50%)

Query:    12 ISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPD 71
             I  F  I  GAS       L+A +  L+ A+ +F  ++       PS S+ A  +  RP 
Sbjct:    17 IQQFTAIT-GASESVGKHMLEACNNNLEMAVTMF--LDGGGIAEEPSTSS-ASVSTVRPH 72

Query:    72 -QNLVTGGQDGGYEVCVPPHA-----KDLFYNDASTTDTSHDILASLYRPPFHVMFNGSF 125
              +  V        E+ V P       ++    +    D     LA L+RPP  +M  GSF
Sbjct:    73 TEEEVRAPIPQKQEILVEPEPLFGVRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSF 132

Query:   126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW 185
             E AK+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG 
Sbjct:   133 ETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQ 192

Query:   186 KVCSFYNMDSIPAVLVIDPITGQKICSW 213
             +   FY +   P V ++DP TGQK+  W
Sbjct:   193 RYIQFYKLGDFPYVSILDPRTGQKLVEW 220

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

ZFIN|ZDB-GENE-040704-8 ubxn7 "UBX domain protein 7" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 9.6e-27, P = 9.6e-27
 Identities = 74/252 (29%), Positives = 126/252 (50%)

Query:    69 RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
             RP +++  G +D  ++       ++L   + S  D     LA L+RPP  +M  GSFE A
Sbjct:   104 RPARSIFDGFRD--FQTETIRQEQEL--RNGSAVDKKLSTLADLFRPPIELMHKGSFETA 159

Query:   129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
             KD+   ++KWL++N+Q+ ++F+   LNRD W N+AV  II  +FIFWQ Y D+ EG +  
Sbjct:   160 KDSGQLENKWLMINIQNVQDFACQCLNRDVWSNDAVKTIIREHFIFWQVYHDSEEGQRYI 219

Query:   189 SFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR---KCATIIIERQ 245
              FY ++  P + ++DP TGQK+  W   ++     + +  F+    +   + +    +R 
Sbjct:   220 QFYKLNKFPYISILDPRTGQKMVEW-NQLDVSSFMDQVTGFLSEHGQLDGQSSQPPAKRA 278

Query:   246 RASSTTPQRNIKDCCSALAASME------TIKDTIGVSPSDADVTS-ADKEATSTTQGTA 298
             R+ S           +A+ AS++      T +     S  D+D    +D E   +  G+ 
Sbjct:   279 RSESLIDASEDSQLEAAIRASLQETHYESTQEKAESRSDDDSDAEPFSDSEGLISVDGSD 338

Query:   299 YPALPEEPNVDG 310
               A   E ++DG
Sbjct:   339 NEAGAGEDSLDG 350

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3LQY9 UBXN7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 297 (109.6 bits), Expect = 5.4e-26, P = 5.4e-26
 Identities = 57/145 (39%), Positives = 84/145 (57%)

Query:    69 RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
             RP +++  G +D  ++       ++L   +    D     LA L+RPP  +M  GSFE A
Sbjct:    89 RPARSIFDGFRD--FQTETIRQEQEL--RNGGAIDKKLTTLADLFRPPIDLMHKGSFETA 144

Query:   129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
             K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct:   145 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 204

Query:   189 SFYNMDSIPAVLVIDPITGQKICSW 213
              FY +   P V ++DP TGQK+  W
Sbjct:   205 QFYKLGDFPYVSILDPRTGQKLVEW 229

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|E2R9U7 UBXN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 297 (109.6 bits), Expect = 6.4e-26, P = 6.4e-26
 Identities = 57/145 (39%), Positives = 84/145 (57%)

Query:    69 RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
             RP +++  G +D  ++       ++L   +    D     LA L+RPP  +M  GSFE A
Sbjct:   102 RPARSIFDGFRD--FQTETIRQEQEL--RNGGAIDKKLTTLADLFRPPIDLMHKGSFETA 157

Query:   129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
             K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct:   158 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 217

Query:   189 SFYNMDSIPAVLVIDPITGQKICSW 213
              FY +   P V ++DP TGQK+  W
Sbjct:   218 QFYKLGDFPYVSILDPRTGQKLVEW 242

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|O94888 UBXN7 "UBX domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 6.4e-26, P = 6.4e-26
 Identities = 57/145 (39%), Positives = 84/145 (57%)

Query:    69 RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
             RP +++  G +D  ++       ++L   +    D     LA L+RPP  +M  GSFE A
Sbjct:   102 RPARSIFDGFRD--FQTETIRQEQEL--RNGGAIDKKLTTLADLFRPPIDLMHKGSFETA 157

Query:   129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
             K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct:   158 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 217

Query:   189 SFYNMDSIPAVLVIDPITGQKICSW 213
              FY +   P V ++DP TGQK+  W
Sbjct:   218 QFYKLGDFPYVSILDPRTGQKLVEW 242

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IDA

UNIPROTKB|E1BTX4 UBXN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 297 (109.6 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 57/145 (39%), Positives = 84/145 (57%)

Query:    69 RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
             RP +++  G +D  ++       ++L   +    D     LA L+RPP  +M  GSFE A
Sbjct:   105 RPARSIFDGFRD--FQTETIRQEQEL--RNGGAVDKKLTTLADLFRPPIDLMHKGSFETA 160

Query:   129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
             K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct:   161 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 220

Query:   189 SFYNMDSIPAVLVIDPITGQKICSW 213
              FY +   P V ++DP TGQK+  W
Sbjct:   221 QFYKLADFPYVSILDPRTGQKLVEW 245

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

UNIPROTKB|F1MUA8 UBXN7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 56/145 (38%), Positives = 84/145 (57%)

Query:    69 RPDQNLVTGGQDGGYEVCVPPHAKDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKA 128
             RP +++  G +D  ++       ++L   +    D     LA L+RPP  +M  GSFE A
Sbjct:    87 RPARSIFDGFRD--FQTETIRQEQEL--RNGGAIDKKLTTLADLFRPPIDLMHKGSFETA 142

Query:   129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC 188
             K+    Q+KWL++N+Q+ ++F+   LNRD W NEAV  II  +FIFWQ Y D+ EG +  
Sbjct:   143 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYI 202

Query:   189 SFYNMDSIPAVLVIDPITGQKICSW 213
              FY +   P V ++DP TG+K+  W
Sbjct:   203 QFYKLGDFPYVSILDPRTGKKLVEW 227

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

DICTYBASE|DDB_G0270358 DDB_G0270358 "ubiquitin interacting motif (UIM) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 228 (85.3 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
 Identities = 45/139 (32%), Positives = 75/139 (53%)

Query:    92 KDLFYNDASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSS 151
             K+   N    T+     L+ L++PP  ++  G+F++ K  A  +  ++LVN+Q  +EF  
Sbjct:   118 KERGINQDKATEKQKS-LSELFKPPLDILTFGTFDEIKKMAEQKKYFVLVNIQDVQEFDC 176

Query:   152 LMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC 211
               LNRDTW N+ + ++I  NF+FWQ      EG      Y +   P + +IDP TGQK+ 
Sbjct:   177 QKLNRDTWSNKDLKELIGENFVFWQVNSANPEGKWFTQIYPVFKFPYIAIIDPRTGQKLQ 236

Query:   212 SWCGMINPQPLGEMLLPFM 230
                G I+ + + + L+ F+
Sbjct:   237 DMTGFIDAEEMAQYLVTFL 255

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0001806 orf19.4430 [Candida albicans (taxid:5476)]

 Score = 243 (90.6 bits), Expect = 8.5e-20, P = 8.5e-20
 Identities = 41/105 (39%), Positives = 67/105 (63%)

Query:   109 LASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII 168
             LA+L+RPPF ++   + ++AK       KW+L+N+Q + EF   +LNRD W NE + QI+
Sbjct:   227 LANLFRPPFDIISVLNLDEAKYQGRQLKKWILINIQDSSEFQCQVLNRDFWSNERIKQIV 286

Query:   169 SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW 213
               NFIF Q   D+  G    +FY++D+ P + ++DP+TG+++  W
Sbjct:   287 KQNFIFLQYQTDSVNGQSYVNFYHVDTFPHIAILDPLTGERVHKW 331

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_X000378 hypothetical protein (444 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
cd02958	114	cd02958, UAS, UAS family; UAS is a domain of unkno	2e-43
smart00594	122	smart00594, UAS, UAS domain	1e-35
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	8e-07

>gnl|CDD|239256 cd02958, UAS, UAS family; UAS is a domain of unknown function

 Score =  144 bits (366), Expect = 2e-43
 Identities = 53/113 (46%), Positives = 69/113 (61%)

Query: 120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYD 179
            F GSFE AK  A ++ KWLLV LQS  EF S +LNRD W NE+V + I  NFIFWQ   
Sbjct: 1   FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDI 60

Query: 180 DTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR 232
           D+SEG +    Y +D  P + +IDP TG+ +  W G I P+ L   L+ F++ 
Sbjct: 61  DSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), which is involved in the ubiquitin-proteosome pathway. Some members of this family are uncharacterized proteins containing only a UAS domain. Length = 114

>gnl|CDD|214737 smart00594, UAS, UAS domain

 Score =  124 bits (314), Expect = 1e-35
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 5/124 (4%)

Query: 111 SLYRPPF-HVMFNGSFEKAKDAALAQ--DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQI 167
            L+RPP+  + + GS E AK  A  Q    WL ++ Q + +  S + NRD   NEAV  +
Sbjct: 1   KLFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPD--SQVFNRDVLCNEAVKSL 58

Query: 168 ISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL 227
           I  NFIFWQ   DTSEG +V  FY +DS P V ++DP TGQ++  W G++  +   E L+
Sbjct: 59  IRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELM 118

Query: 228 PFMD 231
            F++
Sbjct: 119 TFLE 122

Length = 122

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG 184
            ++A   A  + K LLV+  +    +   L+RD   +  V + ++  F+  +  D T+  
Sbjct: 6   LDEALAKAREEGKPLLVDFGADWCPTCQALDRDFLSDPRV-KALAEKFVLLR-VDVTTRD 63

Query: 185 WKVCSFYNMDSIPAVLVIDP 204
                      +P V+ +DP
Sbjct: 64  -PNLLLD-GQGVPHVVFLDP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	100.0
smart00594	122	UAS UAS domain.	99.96
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.95
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	99.95
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	99.89
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.65
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.52
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.52
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.52
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.38
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	99.36
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	99.33
KOG1363	460	consensus Predicted regulator of the ubiquitin pat	99.31
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.18
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.14
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.14
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.1
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.02
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	98.94
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.74
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.74
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.73
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.67
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.66
COG1331	667	Highly conserved protein containing a thioredoxin	98.65
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.59
PRK10996	139	thioredoxin 2; Provisional	98.58
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.57
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.54
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.51
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.49
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.48
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.45
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.45
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.43
PHA02278	103	thioredoxin-like protein	98.43
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.42
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.42
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.41
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.41
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.37
PRK09381	109	trxA thioredoxin; Provisional	98.36
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.34
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.34
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.32
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.3
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.3
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.3
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.3
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.27
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.27
PTZ00051	98	thioredoxin; Provisional	98.22
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.22
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.22
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.21
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.19
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.18
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.16
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.11
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.09
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.08
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.06
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.04
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.01
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.99
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.97
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	97.97
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.93
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.89
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	97.87
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.86
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.8
PTZ00102	477	disulphide isomerase; Provisional	97.78
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	97.77
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.76
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	97.75
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.74
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	97.64
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	97.64
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.6
PTZ00102	477	disulphide isomerase; Provisional	97.56
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	97.52
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.51
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.51
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.46
PLN02309	457	5'-adenylylsulfate reductase	97.42
smart00804	63	TAP_C C-terminal domain of vertebrate Tap protein.	97.41
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.4
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.35
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.33
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.33
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.32
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.3
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.29
PTZ00062	204	glutaredoxin; Provisional	97.26
PTZ00056	199	glutathione peroxidase; Provisional	97.21
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	97.18
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.13
PHA02125	75	thioredoxin-like protein	97.11
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.11
PF13728	215	TraF: F plasmid transfer operon protein	97.1
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.07
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.06
PLN02412	167	probable glutathione peroxidase	97.03
PF03943	51	TAP_C: TAP C-terminal domain; InterPro: IPR005637	96.99
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.96
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	96.95
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	96.91
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	96.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.62
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	96.62
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.59
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	96.5
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	96.48
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	96.48
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	96.48
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	96.46
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	96.44
KOG2244	786	consensus Highly conserved protein containing a th	96.42
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.4
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	96.36
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.31
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	96.23
PRK15000	200	peroxidase; Provisional	96.15
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.15
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	95.93
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	95.79
PTZ00253	199	tryparedoxin peroxidase; Provisional	95.78
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	95.72
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	95.37
PTZ00137	261	2-Cys peroxiredoxin; Provisional	95.36
PRK13190	202	putative peroxiredoxin; Provisional	95.21
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	94.92
PTZ00256	183	glutathione peroxidase; Provisional	94.82
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	94.82
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	94.72
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	94.7
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	94.37
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	94.02
PRK13189	222	peroxiredoxin; Provisional	93.82
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	93.56
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	93.56
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	93.48
PRK13191	215	putative peroxiredoxin; Provisional	93.43
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	93.25
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	93.08
PRK13599	215	putative peroxiredoxin; Provisional	92.88
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	92.84
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	92.61
PRK10606	183	btuE putative glutathione peroxidase; Provisional	92.33
smart00546	43	CUE Domain that may be involved in binding ubiquit	92.18
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	91.92
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	91.51
KOG4351	244	consensus Uncharacterized conserved protein [Funct	90.22
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	90.1
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	89.54
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	89.48
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	89.28
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	89.24
PRK06369	115	nac nascent polypeptide-associated complex protein	88.67
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	88.62
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	87.92
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	87.57
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	87.32
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	86.42
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	86.31
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	84.3
PF02809	18	UIM: Ubiquitin interaction motif; InterPro: IPR003	83.38
smart00726	26	UIM Ubiquitin-interacting motif. Present in protea	83.09
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	82.7
KOG4277	468	consensus Uncharacterized conserved protein, conta	81.55
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	81.04
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	80.1

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-37  Score=292.60  Aligned_cols=242  Identities=29%  Similarity=0.492  Sum_probs=188.3

Q ss_pred             chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCCCcccccCCCCCCCc
Q 021440            5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEADATAPPSYSALAENANSRPDQNLVTGGQDGGYE   84 (312)
Q Consensus         5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~~~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~   84 (312)
                      ..++.++|.+|++||..++.+.|++||++++|||+.||+|||++++.....+++   +.+                    
T Consensus         3 ~~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~---~~a--------------------   59 (356)
T KOG1364|consen    3 TGAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSS---SAA--------------------   59 (356)
T ss_pred             cchHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCc---ccC--------------------
Confidence            346789999999995559999999999999999999999999987643321110   000                    


Q ss_pred             ccCC-CCccccccc--------------------CCCCCcchhHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEe
Q 021440           85 VCVP-PHAKDLFYN--------------------DASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNL  143 (312)
Q Consensus        85 VRaP-p~~~etL~~--------------------~~~~~~~~~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVni  143 (312)
                       -.| +.++++|++                    ..+...+.+.+|+.|||||++|||+|+++.|+..|.++.+||||  
T Consensus        60 -~sp~~~~re~l~~~~~~~d~~~~s~~~p~~~~~~~s~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV--  136 (356)
T KOG1364|consen   60 -PSPIEPQREVLFDPLGIMDQSTSSILDPSENQDDESEHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV--  136 (356)
T ss_pred             -CCcccccceeeeccccccccCcccccCcccccchhhhhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE--
Confidence             012 223333322                    01123456889999999999999999999999999999999999  


Q ss_pred             ecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440          144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG  223 (312)
Q Consensus       144 q~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl  223 (312)
                                                        +.|+.||++|..+|++.+.|||+||||+||++|++|.|.+.|+.|+
T Consensus       137 ----------------------------------~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl  182 (356)
T KOG1364|consen  137 ----------------------------------LDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFL  182 (356)
T ss_pred             ----------------------------------eeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHH
Confidence                                              4588999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCcC-CccccccC-CCCCCCCC--hHHHHHHHHHHhhHhhcCCCCCCCCCC-CCCCcccccccccc-Cc
Q 021440          224 EMLLPFMDRSPRKCA-TIIIERQR-ASSTTPQR--NIKDCCSALAASMETIKDTIGVSPSDA-DVTSADKEATSTTQ-GT  297 (312)
Q Consensus       224 ~~L~~fl~~~~~~~~-~~~~k~~~-~~~~~~~~--~~eql~~Ai~~Sl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~  297 (312)
                      ..|++|++.+++++. +....+++ +...+..+  +.+||++||++|+.+++..+.   .++ ...+.++.|+|... .+
T Consensus       183 ~~l~~Fi~~~~~d~vas~t~n~~~p~~e~~~~ss~e~~~~elai~~sv~~~~~~~e---~e~~~~s~~ee~e~~~e~~~~  259 (356)
T KOG1364|consen  183 SDLNEFIDSCPHDEVASLTRNRKRPKTEPTCLSSEEDMQMELAIKNSVVNPSSGTE---FEGQGASDEEELETVLEEDLF  259 (356)
T ss_pred             HHHHHHHhcCCccccccccccccCCCCCccccccccchhhhcccccccccCCCccc---ccCCCCcccchhhcccccccc
Confidence            999999999999943 33333321 22223333  457889999999998775533   233 45555666999988 99


Q ss_pred             cCCCCCCCCCCC
Q 021440          298 AYPALPEEPNVD  309 (312)
Q Consensus       298 ~~~~~~~~~~~~  309 (312)
                      .||++.+|||++
T Consensus       260 ~~~~a~~ep~~~  271 (356)
T KOG1364|consen  260 VFPVATVEPKGD  271 (356)
T ss_pred             ccceeeecCCCC
Confidence            999999999994

>smart00594 UAS UAS domain

Probab=99.96  E-value=7.3e-29  Score=206.07  Aligned_cols=115  Identities=44%  Similarity=0.713  Sum_probs=108.9

Q ss_pred             hcCCCc-cccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHh
Q 021440          112 LYRPPF-HVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF  190 (312)
Q Consensus       112 lfrPP~-~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~  190 (312)
                      +|.||+ ++||+|+|++|++.|++++|++|||||++||.+|+.|||+||+|++|+++|++|||+|++++.++||.++++.
T Consensus         2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~   81 (122)
T smart00594        2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF   81 (122)
T ss_pred             CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh
Confidence            688888 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCeEEEEeCCCCee----EEEecCCCChHHHHHHH
Q 021440          191 YNMDSIPAVLVIDPITGQK----ICSWCGMINPQPLGEML  226 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~----v~~~~G~~~~~~fl~~L  226 (312)
                      |++..||+++||+|++|+.    +.+.+|.+++++|++.|
T Consensus        82 ~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       82 YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            9999999999999998764    44478999999999877

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.95  E-value=5.3e-28  Score=197.69  Aligned_cols=114  Identities=46%  Similarity=0.805  Sum_probs=110.6

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ||.|+|++|++.||+++|||||+||++||..|+.|+|+||+|++|+++|++|||+|.+++++++|.+++..|++..+|++
T Consensus         1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~   80 (114)
T cd02958           1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI   80 (114)
T ss_pred             CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +||||++|+.+.++.|.+++++|+..|.++++.+
T Consensus        81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~~  114 (114)
T cd02958          81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEEF  114 (114)
T ss_pred             EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhcC
Confidence            9999988999999999999999999999988753

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=99.95  E-value=4.1e-27  Score=194.83  Aligned_cols=114  Identities=22%  Similarity=0.350  Sum_probs=108.4

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ||+|+|++|++.||++.||||||||++.|.+|..+||+||+|++|++||++|||+|++|+.++||.++++.+++.+||++
T Consensus         1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~   80 (116)
T cd02991           1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL   80 (116)
T ss_pred             CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCe--eEEEecCCCChHHHHHHHHHHHhhC
Q 021440          200 LVIDPITGQ--KICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       200 ~IIdprTGe--~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +||+|+.++  .+.+++|.++|++|+..|+.+++++
T Consensus        81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~  116 (116)
T cd02991          81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN  116 (116)
T ss_pred             EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            999987654  3667999999999999999999864

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=99.89  E-value=9.9e-23  Score=172.84  Aligned_cols=114  Identities=23%  Similarity=0.230  Sum_probs=103.2

Q ss_pred             cccccHHHHHHHH----HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh------------
Q 021440          120 MFNGSFEKAKDAA----LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE------------  183 (312)
Q Consensus       120 ~~~gsf~~A~~~A----k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E------------  183 (312)
                      ||.|+|++|++.|    |++.|+|+||||++.+..|..|||+|+++++|++||++|||+|.+|+..++            
T Consensus         1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~   80 (136)
T cd02990           1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH   80 (136)
T ss_pred             CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence            5899999999999    999999999999999999999999999999999999999999999999987            


Q ss_pred             ----HHHHHHhcCCCCCCeEEEEeCCCC--eeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          184 ----GWKVCSFYNMDSIPAVLVIDPITG--QKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       184 ----G~~~~~~Y~~~~~P~i~IIdprTG--e~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                          +.+.++.+++++||+++||.+..+  +.+.+.+|.++|++++++|.+.++.|
T Consensus        81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~  136 (136)
T cd02990          81 FGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF  136 (136)
T ss_pred             hhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence                334667788999999999987544  44666899999999999999998754

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.65  E-value=5.2e-16  Score=119.81  Aligned_cols=80  Identities=19%  Similarity=0.278  Sum_probs=71.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++|++.|++++|+|||+|++.||..|+.|+|.||.+++|++++++|||+++++.+..++......   ..+|+++|
T Consensus         3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~   79 (82)
T PF13899_consen    3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFF   79 (82)
T ss_dssp             ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEE
T ss_pred             hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEE
Confidence            468999999999999999999999999999999999999999999999999999999988777542211   33999999


Q ss_pred             EeC
Q 021440          202 IDP  204 (312)
Q Consensus       202 Idp  204 (312)
                      |||
T Consensus        80 ldp   82 (82)
T PF13899_consen   80 LDP   82 (82)
T ss_dssp             EET
T ss_pred             eCC
Confidence            997

...

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.52  E-value=1.4e-13  Score=113.59  Aligned_cols=109  Identities=21%  Similarity=0.231  Sum_probs=98.0

Q ss_pred             cHHHHHHHHHHcC-CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh-----------hHHHHHHhc
Q 021440          124 SFEKAKDAALAQD-KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS-----------EGWKVCSFY  191 (312)
Q Consensus       124 sf~~A~~~Ak~~~-KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~-----------EG~~~~~~Y  191 (312)
                      ++.++++.|++++ |++||+++++||..|+.|...++.++.+.+.++++|+++.++++..           ....++..|
T Consensus         1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~   80 (125)
T cd02951           1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY   80 (125)
T ss_pred             ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence            3568899999999 9999999999999999999999999999999999999999998764           356889999


Q ss_pred             CCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       192 ~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      .+..+|+++|+++..|+.+..+.|+.+.+.|...|..++++
T Consensus        81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            99999999999984378888999999999999999888765

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.52  E-value=1.2e-13  Score=115.81  Aligned_cols=89  Identities=13%  Similarity=0.167  Sum_probs=76.0

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--HHH----HhcCCCCCCeE
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--KVC----SFYNMDSIPAV  199 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--~~~----~~Y~~~~~P~i  199 (312)
                      ++|++.|++++|+|||+++++||.+|++|.+.||.+++|.++|+++||++.+|++.....  ++.    ..|++..+|++
T Consensus         5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~   84 (124)
T cd02955           5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN   84 (124)
T ss_pred             HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence            578999999999999999999999999999999999999999999999999998763211  122    24678899999


Q ss_pred             EEEeCCCCeeEEEecC
Q 021440          200 LVIDPITGQKICSWCG  215 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G  215 (312)
                      +|++| .|+.+....+
T Consensus        85 vfl~~-~G~~~~~~~~   99 (124)
T cd02955          85 VFLTP-DLKPFFGGTY   99 (124)
T ss_pred             EEECC-CCCEEeeeee
Confidence            99999 5998866433

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.52  E-value=2.5e-14  Score=120.77  Aligned_cols=94  Identities=15%  Similarity=0.211  Sum_probs=77.8

Q ss_pred             ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      |-+..+|++|++.||+++|+|||++++.||..|+.|.+.||++++|++++++|||...++.+..+.. +. . ....+|+
T Consensus         6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~-~~-~-~g~~vPt   82 (130)
T cd02960           6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN-LS-P-DGQYVPR   82 (130)
T ss_pred             ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC-cC-c-cCcccCe
Confidence            3345589999999999999999999999999999999999999999999999999888887754311 00 0 1135899


Q ss_pred             EEEEeCCCCeeEEEecCC
Q 021440          199 VLVIDPITGQKICSWCGM  216 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~  216 (312)
                      ++++|| .|+.+....|+
T Consensus        83 ivFld~-~g~vi~~i~Gy   99 (130)
T cd02960          83 IMFVDP-SLTVRADITGR   99 (130)
T ss_pred             EEEECC-CCCCccccccc
Confidence            999998 58888777775

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.38  E-value=2.3e-12  Score=102.89  Aligned_cols=100  Identities=15%  Similarity=0.132  Sum_probs=88.2

Q ss_pred             HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh--hHHHHHHhcCCCCCCeEEEEeC
Q 021440          127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS--EGWKVCSFYNMDSIPAVLVIDP  204 (312)
Q Consensus       127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~--EG~~~~~~Y~~~~~P~i~IIdp  204 (312)
                      +++..|.+++|++||+++.+||.+|+.|.+.++.++.+.+.++++|++..++.+..  ....+++.|++..+|++.|+++
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~   81 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP   81 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence            56778889999999999999999999999998899999999988999999987653  3578999999999999999997


Q ss_pred             CCCeeEEEecCCCChHHHHHHH
Q 021440          205 ITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       205 rTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      -.|+.+....|+.+.++|.+.|
T Consensus        82 ~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          82 GGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCcccccccCHHHHHHHh
Confidence            3488888889999999887765

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=99.36  E-value=9.1e-13  Score=90.60  Aligned_cols=41  Identities=34%  Similarity=0.678  Sum_probs=36.1

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +++|.+||+| ||+++++|++||+++||||+.||++||+.++
T Consensus         1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~   41 (43)
T PF14555_consen    1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGE   41 (43)
T ss_dssp             HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred             CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            5799999999 7889999999999999999999999999765

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=99.33  E-value=5.2e-12  Score=110.33  Aligned_cols=106  Identities=13%  Similarity=0.190  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--HHH---H-hcCCCCCCe
Q 021440          125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--KVC---S-FYNMDSIPA  198 (312)
Q Consensus       125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--~~~---~-~Y~~~~~P~  198 (312)
                      .++|++.||+++|.|||.|...||..|++|.++++.|++|.++||+|||-..+|.+.....  .|.   + ......+|.
T Consensus        26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl  105 (163)
T PF03190_consen   26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL  105 (163)
T ss_dssp             SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred             CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence            4799999999999999999999999999999999999999999999999999987763222  121   1 225689999


Q ss_pred             EEEEeCCCCeeEEEecCCCCh------HHHHHHHHHHHhh
Q 021440          199 VLVIDPITGQKICSWCGMINP------QPLGEMLLPFMDR  232 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~------~~fl~~L~~fl~~  232 (312)
                      .++++| .|+.+.. .+++.+      ..|++.|..+-+.
T Consensus       106 ~vfltP-dg~p~~~-~tY~P~~~~~g~~~f~~~l~~i~~~  143 (163)
T PF03190_consen  106 TVFLTP-DGKPFFG-GTYFPPEDRYGRPGFLQLLERIAEL  143 (163)
T ss_dssp             EEEE-T-TS-EEEE-ESS--SS-BTTB--HHHHHHHHHHH
T ss_pred             eEEECC-CCCeeee-eeecCCCCCCCCccHHHHHHHHHHH
Confidence            999999 6887754 223444      2566666554433

; PDB: 3IRA_A.

>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]

Probab=99.31  E-value=2.6e-12  Score=128.41  Aligned_cols=200  Identities=17%  Similarity=0.153  Sum_probs=131.1

Q ss_pred             hhHHHhhhcCCCccccccccHHHHHHHHHHcC----CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC
Q 021440          105 SHDILASLYRPPFHVMFNGSFEKAKDAALAQD----KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD  180 (312)
Q Consensus       105 ~~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~----KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d  180 (312)
                      +.+.|.+.|...++-||.|.+..|...|..+.    |.|++|||++.......||+.|+|++.|++||+++||+|.+++.
T Consensus       147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt  226 (460)
T KOG1363|consen  147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVT  226 (460)
T ss_pred             HHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhceeeeccccc
Confidence            77899999988888889999888888887776    99999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhcCCC--CCCeEEEEeCCCCeeE----------------EEecCCCChHHHHHHHHHHHhhCCCCcCCccc
Q 021440          181 TSEGWKVCSFYNMD--SIPAVLVIDPITGQKI----------------CSWCGMINPQPLGEMLLPFMDRSPRKCATIII  242 (312)
Q Consensus       181 s~EG~~~~~~Y~~~--~~P~i~IIdprTGe~v----------------~~~~G~~~~~~fl~~L~~fl~~~~~~~~~~~~  242 (312)
                      +++|+.+...+.+.  .+|++.++.+..++++                ...+|.++..+.+..+..+++.+....    .
T Consensus       227 ~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~----q  302 (460)
T KOG1363|consen  227 ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRL----Q  302 (460)
T ss_pred             CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHH----h
Confidence            99999999888887  4455554444333321                112344444444444433333332210    0


Q ss_pred             cccCCCCCC--CCChHHHHHHHHHHhhHhhcCC----C--CCCCCCC--CCCCccccccccccCccCCCCCCCCCC
Q 021440          243 ERQRASSTT--PQRNIKDCCSALAASMETIKDT----I--GVSPSDA--DVTSADKEATSTTQGTAYPALPEEPNV  308 (312)
Q Consensus       243 k~~~~~~~~--~~~~~eql~~Ai~~Sl~~~~~~----~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (312)
                      .+.+..+..  ..-+.+|++.++++||+..+--    .  .......  ...-+.+.|++-..+-.+..||.||+.
T Consensus       303 ~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a  378 (460)
T KOG1363|consen  303 MRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSA  378 (460)
T ss_pred             hcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCc
Confidence            011110000  1112367899999999854421    0  0000011  111122226666567789999999944

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.18  E-value=1.1e-11  Score=99.57  Aligned_cols=94  Identities=18%  Similarity=0.270  Sum_probs=78.4

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh------------------HHHHHHhcCC
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE------------------GWKVCSFYNM  193 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E------------------G~~~~~~Y~~  193 (312)
                      ||.++|.++|++.++||..|+.|.+.++.+.++...++++|.++.++.+...                  ..+++..|++
T Consensus         1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            5778999999999999999999999999999999999989999988887654                  2468889999


Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      ..+|+++++|+ .|+.+.+..|++++++|...|
T Consensus        81 ~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred             CccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence            99999999995 599998899999999998876

...

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.14  E-value=8.6e-11  Score=97.11  Aligned_cols=102  Identities=21%  Similarity=0.181  Sum_probs=80.6

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCC--CCeEEE
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDS--IPAVLV  201 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~--~P~i~I  201 (312)
                      +|++|++.|++++|++||+++.+||.+|+.|.+.+...+.+.. ++.+||...++.+..   .....|++..  +|++++
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~---~~~~~~~~~g~~vPt~~f   82 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE---PKDEEFSPDGGYIPRILF   82 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC---chhhhcccCCCccceEEE
Confidence            7999999999999999999999999999999998877777766 677899887765432   1234677754  999999


Q ss_pred             EeCCCCeeEEE---ecCCCChHHHHHHHHHHH
Q 021440          202 IDPITGQKICS---WCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       202 IdprTGe~v~~---~~G~~~~~~fl~~L~~fl  230 (312)
                      ++| .|+.+.+   .-|..+.+.|...|....
T Consensus        83 ~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          83 LDP-SGDVHPEIINKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             ECC-CCCCchhhccCCCCccccccCCCHHHHH
Confidence            998 5998775   456667777766666554

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.14  E-value=2e-10  Score=118.32  Aligned_cols=106  Identities=18%  Similarity=0.303  Sum_probs=94.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--hhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--SEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..+|+++++.|+.++|.+||+++.+||..|+.|.+.++.+++|++.++ +|++.++|++.  ++...+++.|++..+|++
T Consensus       460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~  538 (571)
T PRK00293        460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTI  538 (571)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEE
Confidence            346889999999999999999999999999999999999999999996 69999999875  456789999999999999


Q ss_pred             EEEeCCCCeeE--EEecCCCChHHHHHHHHHH
Q 021440          200 LVIDPITGQKI--CSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       200 ~IIdprTGe~v--~~~~G~~~~~~fl~~L~~f  229 (312)
                      .++|+ .|+.+  .++.|..++++|++.|++.
T Consensus       539 ~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        539 LFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             EEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence            99997 58774  5688999999999888764

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=5.7e-10  Score=96.36  Aligned_cols=111  Identities=17%  Similarity=0.184  Sum_probs=95.9

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------HHH
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------GWK  186 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------G~~  186 (312)
                      .+-+.-++...|...+|++|+-+.+.+|.-|..|.||++..+.+++++.+||.++-++....+              -..
T Consensus        27 s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~E  106 (182)
T COG2143          27 SNIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEE  106 (182)
T ss_pred             hhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHH
Confidence            334456777888999999999999999999999999999999999999999999999876531              236


Q ss_pred             HHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       187 ~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +++.|+++++|++++.|- +|+.+....|+++|+.|+..|.=.-+.
T Consensus       107 La~kf~vrstPtfvFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g  151 (182)
T COG2143         107 LAQKFAVRSTPTFVFFDK-TGKTILELPGYMPPEQFLAVLKYVADG  151 (182)
T ss_pred             HHHHhccccCceEEEEcC-CCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999995 899999999999999999887544333

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.02  E-value=3.2e-09  Score=90.51  Aligned_cols=102  Identities=20%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK  209 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~  209 (312)
                      +.|...+|.+||+|+.+||.+|+.|...+-   .+.+-.+.++-|+.++++..+...++..|++..+|+++|+++ .|+.
T Consensus        14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~~   89 (142)
T cd02950          14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGNE   89 (142)
T ss_pred             HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCCE
Confidence            445678999999999999999999965431   233333445556667777766678899999999999999996 6999


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhCCC
Q 021440          210 ICSWCGMINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       210 v~~~~G~~~~~~fl~~L~~fl~~~~~  235 (312)
                      +..+.|....++|.+.|...+...++
T Consensus        90 v~~~~G~~~~~~l~~~l~~l~~~~~~  115 (142)
T cd02950          90 EGQSIGLQPKQVLAQNLDALVAGEPL  115 (142)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999987765

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=98.94  E-value=4.5e-09  Score=102.64  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=103.5

Q ss_pred             ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      +-|+|+..+|+..||..++.++|||.+.++ .++.|+|-+|.+..|.+.+...||...++..+....+|+..|++...|.
T Consensus         2 lwfkGnipeAIa~aK~kkalfVVyI~gddE-~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs   80 (506)
T KOG2507|consen    2 LWFKGNIPEAIAEAKGKKALFVVYISGDDE-ESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPS   80 (506)
T ss_pred             cccccchHHHHHHhhcCCeEEEEEEecCch-HhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccc
Confidence            348999999999999999999999999644 8999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.+|+- +|..+++..|++.+++|.+.|++.+-
T Consensus        81 ~ffIg~-sGtpLevitg~v~adeL~~~i~Kv~~  112 (506)
T KOG2507|consen   81 IFFIGF-SGTPLEVITGFVTADELASSIEKVWL  112 (506)
T ss_pred             eeeecC-CCceeEEeeccccHHHHHHHHHHHHH
Confidence            999994 89999999999999999888877643

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.74  E-value=7.7e-08  Score=75.19  Aligned_cols=93  Identities=16%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeC
Q 021440          125 FEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP  204 (312)
Q Consensus       125 f~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdp  204 (312)
                      |++.+.  +..+|.+||+++++||.+|+.+...+   ..+.+.+...+.|..++.+.  ...+++.|++..+|+++|++ 
T Consensus         3 f~~~i~--~~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~-   74 (96)
T cd02956           3 FQQVLQ--ESTQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFA-   74 (96)
T ss_pred             hHHHHH--hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEe-
Confidence            444443  34589999999999999999997653   45555556678888887665  45789999999999999997 


Q ss_pred             CCCeeEEEecCCCChHHHHHHH
Q 021440          205 ITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       205 rTGe~v~~~~G~~~~~~fl~~L  226 (312)
                       .|+.+..+.|..+.+++...|
T Consensus        75 -~g~~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          75 -AGQPVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             -CCEEeeeecCCCCHHHHHHHh
Confidence             588888899988888766544

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.74  E-value=1.1e-07  Score=76.29  Aligned_cols=94  Identities=16%  Similarity=0.275  Sum_probs=72.0

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCCh-hHHHHHHhcCCCCCCeEE
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTS-EGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~-EG~~~~~~Y~~~~~P~i~  200 (312)
                      .|++++..+  .+|++||+++.+||.+|+.|.      +.+.++.++  ++.|..++.+.. +...+++.|++..+|++.
T Consensus         5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~   76 (103)
T cd02985           5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL   76 (103)
T ss_pred             HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence            456666443  499999999999999999995      455554443  578999988764 346899999999999988


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      ++.  .|+.+..+.|. .+.++.+.+..
T Consensus        77 ~~~--~G~~v~~~~G~-~~~~l~~~~~~  101 (103)
T cd02985          77 FYK--DGEKIHEEEGI-GPDELIGDVLY  101 (103)
T ss_pred             EEe--CCeEEEEEeCC-CHHHHHHHHHh
Confidence            883  69999999994 56677666543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=7.4e-08  Score=82.98  Aligned_cols=106  Identities=21%  Similarity=0.300  Sum_probs=84.9

Q ss_pred             ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ++-..+.++-...=.+.++++||++|++||.+|+.|..-+  ++-+.++ ...|-|+.++.  .+-..++..|.+.++|+
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l--~~~~~~~-~g~~k~~kvdt--D~~~ela~~Y~I~avPt  118 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL--EELVSEY-AGKFKLYKVDT--DEHPELAEDYEISAVPT  118 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHH--HHHHHhh-cCeEEEEEEcc--ccccchHhhcceeeeeE
Confidence            3345567777788899999999999999999999995433  2223333 34688888754  45567899999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ++++.  .|+.+..+.|..+.+.+...+++|+.
T Consensus       119 vlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  119 VLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence            99999  59999899999999999999998874

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.67  E-value=1.8e-07  Score=73.52  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=70.5

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK  209 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~  209 (312)
                      +.++++++||+++++||..|+.+...+   ..+.+.+.  ..++|..++.+..+...++..|++..||++.+..  .|+.
T Consensus        13 ~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~--~g~~   87 (104)
T cd02997          13 FLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE--NGKF   87 (104)
T ss_pred             HHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe--CCCe
Confidence            345677999999999999999997665   34444454  5688888888876678899999999999987775  4888


Q ss_pred             EEEecCCCChHHHHH
Q 021440          210 ICSWCGMINPQPLGE  224 (312)
Q Consensus       210 v~~~~G~~~~~~fl~  224 (312)
                      +..+.|..+++.+++
T Consensus        88 ~~~~~g~~~~~~l~~  102 (104)
T cd02997          88 VEKYEGERTAEDIIE  102 (104)
T ss_pred             eEEeCCCCCHHHHHh
Confidence            888999988887664

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.66  E-value=2.4e-07  Score=72.32  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=77.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      .-+|++.+..   .++.+||+++.+||..|+.+...+   ..+.+-...++.|+.++.+  +...+++.|.+..+|++.+
T Consensus         6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~   77 (103)
T PF00085_consen    6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIF   77 (103)
T ss_dssp             TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEE
T ss_pred             HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEE
Confidence            3456665554   679999999999999999996543   3444445558899988776  5588999999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      +..  |+.+..+.|..+++.+.+.|.+
T Consensus        78 ~~~--g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   78 FKN--GKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             EET--TEEEEEEESSSSHHHHHHHHHH
T ss_pred             EEC--CcEEEEEECCCCHHHHHHHHHc
Confidence            984  8888899999999987776653

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=7.2e-08  Score=99.61  Aligned_cols=84  Identities=14%  Similarity=0.235  Sum_probs=70.8

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHH----HHHHhcC-CCCCCeE
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGW----KVCSFYN-MDSIPAV  199 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~----~~~~~Y~-~~~~P~i  199 (312)
                      ++|+.+||+++|+|||.|--++|..||+|.++.+.|++|.++||+|||..+||.+. |+=-    ++++... -+.+|.-
T Consensus        33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt  112 (667)
T COG1331          33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT  112 (667)
T ss_pred             HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence            79999999999999999999999999999999999999999999999999997553 2211    2333333 2779999


Q ss_pred             EEEeCCCCeeE
Q 021440          200 LVIDPITGQKI  210 (312)
Q Consensus       200 ~IIdprTGe~v  210 (312)
                      +|+.| .|+-+
T Consensus       113 VfLTP-d~kPF  122 (667)
T COG1331         113 VFLTP-DGKPF  122 (667)
T ss_pred             EEECC-CCcee
Confidence            99999 57766

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.59  E-value=5.4e-07  Score=71.12  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=77.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      |+|.=....++ .+|.+||++.++||..|+.+.+-+   ++|.+-++.++.|+.+|.+..  ..++..|++..+|++.|+
T Consensus         1 ~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~   74 (97)
T cd02949           1 GSYALRKLYHE-SDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFF   74 (97)
T ss_pred             CchhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEE
Confidence            55666666666 889999999999999999997754   456666666788888887643  467889999999999999


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      .  .|+.+....|..+.++|.+.|
T Consensus        75 ~--~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          75 K--DKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             E--CCeEEEEEeCCccHHHHHHhh
Confidence            6  489998999988888766654

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PRK10996 thioredoxin 2; Provisional

Probab=98.58  E-value=6.8e-07  Score=75.79  Aligned_cols=91  Identities=15%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      +.+++|.++|+++.+||..|+.|... |  ..+.+-.+.++.|..++.+..  ..++..|++..+|+++|++  .|+.+.
T Consensus        48 ~i~~~k~vvv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~~v~  120 (139)
T PRK10996         48 LLQDDLPVVIDFWAPWCGPCRNFAPI-F--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQVVD  120 (139)
T ss_pred             HHhCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCEEEE
Confidence            44668999999999999999999653 3  335555566788888877653  4688999999999999886  699999


Q ss_pred             EecCCCChHHHHHHHHHH
Q 021440          212 SWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       212 ~~~G~~~~~~fl~~L~~f  229 (312)
                      .+.|..+.+.|.+.|.+.
T Consensus       121 ~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        121 MLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEcCCCCHHHHHHHHHHh
Confidence            999998888777776653

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.57  E-value=3.5e-07  Score=73.90  Aligned_cols=96  Identities=13%  Similarity=0.070  Sum_probs=73.2

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHH-hcCCCCCCeEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCS-FYNMDSIPAVL  200 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~-~Y~~~~~P~i~  200 (312)
                      .+|+ ++..|++++|.+||+++.+||..|+.|... |  ..+.+.++. +|.|..++.+.. ...++. .|++..||++.
T Consensus         9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~   83 (109)
T cd02993           9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTIL   83 (109)
T ss_pred             HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEE
Confidence            3454 666778899999999999999999999876 3  456666665 599999988763 345565 69999999999


Q ss_pred             EEeCCCCeeEEEecCC-CChHHHHH
Q 021440          201 VIDPITGQKICSWCGM-INPQPLGE  224 (312)
Q Consensus       201 IIdprTGe~v~~~~G~-~~~~~fl~  224 (312)
                      ++++. |..+..+.|. .+.+.++.
T Consensus        84 ~f~~~-~~~~~~y~g~~~~~~~l~~  107 (109)
T cd02993          84 FFPKN-SRQPIKYPSEQRDVDSLLM  107 (109)
T ss_pred             EEcCC-CCCceeccCCCCCHHHHHh
Confidence            99874 4456778884 57776543

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.54  E-value=7.8e-07  Score=72.32  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=74.7

Q ss_pred             cccccccHHHHHHHHH--HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHHHHHHhcCCC
Q 021440          118 HVMFNGSFEKAKDAAL--AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMD  194 (312)
Q Consensus       118 ~l~~~gsf~~A~~~Ak--~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~~~~~~Y~~~  194 (312)
                      +.-|.-+..+..+.+.  ..+|++||+++++||..|+.+.+.+.   ++.+-++ .++.|..++.+..  ..++..|++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~---~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~   78 (111)
T cd02963           4 DYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWK---EVIQELEPLGVGIATVNAGHE--RRLARKLGAH   78 (111)
T ss_pred             chhheeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHH---HHHHHHHhcCceEEEEecccc--HHHHHHcCCc
Confidence            3334445555555554  47899999999999999999987532   4444444 3588888876653  4678999999


Q ss_pred             CCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       195 ~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                      ++|++.|+.  .|+.+....|..+.+.+.+.|.
T Consensus        79 ~~Pt~~i~~--~g~~~~~~~G~~~~~~l~~~i~  109 (111)
T cd02963          79 SVPAIVGII--NGQVTFYHDSSFTKQHVVDFVR  109 (111)
T ss_pred             cCCEEEEEE--CCEEEEEecCCCCHHHHHHHHh
Confidence            999999996  5887777889887776554443

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=7.6e-07  Score=72.75  Aligned_cols=92  Identities=16%  Similarity=0.181  Sum_probs=77.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc--EEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n--FIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..+|+.....+...+|.|+|+++++||.+|..|      .|.+.++-.++  -+|+.+|+|.  -..+++.|++...|++
T Consensus         7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf   78 (106)
T KOG0907|consen    7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTF   78 (106)
T ss_pred             hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEE
Confidence            456788888888889999999999999999999      57788887764  7999999998  8899999999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGE  224 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~  224 (312)
                      .++-  .|+.+....|.- +.++.+
T Consensus        79 ~f~k--~g~~~~~~vGa~-~~~l~~  100 (106)
T KOG0907|consen   79 VFYK--GGEEVDEVVGAN-KAELEK  100 (106)
T ss_pred             EEEE--CCEEEEEEecCC-HHHHHH
Confidence            9995  699999888854 333333

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.49  E-value=4.8e-07  Score=79.12  Aligned_cols=93  Identities=16%  Similarity=0.143  Sum_probs=72.4

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--HH-------------------HHHHh
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--GW-------------------KVCSF  190 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--G~-------------------~~~~~  190 (312)
                      +...+|+++|+++.+||..|+.+.      +.+.++.+.++.++.++.+...  ..                   ++...
T Consensus        59 ~~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~  132 (173)
T TIGR00385        59 AFIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD  132 (173)
T ss_pred             HhcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence            344689999999999999999874      4566666667777777654321  11                   33456


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      |++..+|+..+||+ .|+.+.++.|..+.+++.+.|.++|.
T Consensus       133 ~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       133 LGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             cCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence            67778999999997 59999999999999999999998874

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.48  E-value=1.1e-06  Score=70.01  Aligned_cols=97  Identities=12%  Similarity=0.138  Sum_probs=73.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++.+.   +.+|.+||+++++||..|+.|...+   ..+.+-++..+.|..++.+..+...++..|++..+|++.|
T Consensus         7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002           7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence            455666654   4688899999999999999997642   2344455556778888888777788999999999999999


Q ss_pred             EeCCC---CeeEEEecCCCChHHHHH
Q 021440          202 IDPIT---GQKICSWCGMINPQPLGE  224 (312)
Q Consensus       202 IdprT---Ge~v~~~~G~~~~~~fl~  224 (312)
                      +++..   +.....+.|..+.+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~G~~~~~~l~~  106 (109)
T cd03002          81 FRPPKKASKHAVEDYNGERSAKAIVD  106 (109)
T ss_pred             EeCCCcccccccccccCccCHHHHHH
Confidence            99732   124556788887776554

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.45  E-value=1.5e-06  Score=71.98  Aligned_cols=96  Identities=14%  Similarity=0.227  Sum_probs=76.2

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--c-EEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--N-FIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--n-FIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..|++++..|  ++|.++|.+..+||.+|+.|      +|-+.++-++  + .+|+.+|+|  |-..+++.|.+...|+.
T Consensus         3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~m------dp~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtf   72 (114)
T cd02986           3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQL------DDILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPST   72 (114)
T ss_pred             HHHHHHHHhc--CCCEEEEEEeCCCChhHHHH------HHHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEE
Confidence            4688888888  89999999999999999999      4555666553  5 789999887  56679999999999999


Q ss_pred             EEEeCCCCeeEEE---------ecCCC-ChHHHHHHHHHHH
Q 021440          200 LVIDPITGQKICS---------WCGMI-NPQPLGEMLLPFM  230 (312)
Q Consensus       200 ~IIdprTGe~v~~---------~~G~~-~~~~fl~~L~~fl  230 (312)
                      +++-  .|+-|++         |+|.+ +.++||..+....
T Consensus        73 vffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y  111 (114)
T cd02986          73 IFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  111 (114)
T ss_pred             EEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence            9886  3666655         56655 6688988876543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.45  E-value=1e-06  Score=72.64  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=74.8

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHH-HhcCCCCCCe
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVC-SFYNMDSIPA  198 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~-~~Y~~~~~P~  198 (312)
                      +-..+|+++... .++++++||+++.+||.+|+.|.-.+   +++.+.++.+..|.++|.+...  .++ ..|++..||+
T Consensus        14 l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~---~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PT   87 (113)
T cd03006          14 FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEF---EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPV   87 (113)
T ss_pred             echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCE
Confidence            346678877554 78899999999999999999996422   3455555667888999877544  467 5899999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHH
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGE  224 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~  224 (312)
                      |.+.-  .|+....+.|..+.+.++.
T Consensus        88 l~lf~--~g~~~~~y~G~~~~~~i~~  111 (113)
T cd03006          88 IHLYY--RSRGPIEYKGPMRAPYMEK  111 (113)
T ss_pred             EEEEE--CCccceEEeCCCCHHHHHh
Confidence            99994  5777778899888887654

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.43  E-value=5.3e-07  Score=91.99  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=84.6

Q ss_pred             HHHHHHHcCC--eEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--ChhHHHHHHhcCCCCCCeEEEEe
Q 021440          128 AKDAALAQDK--WLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--TSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       128 A~~~Ak~~~K--wLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--s~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      .++.+..++|  ++|||++.+||-.|+.+.|-|++++.|..-+. ++|++|.|+.  +++-..+.+.|++-.-|++.+.+
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~  542 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG  542 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            5555555555  99999999999999999999999888877665 8999999866  46666899999999999999999


Q ss_pred             CCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          204 PITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       204 prTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +. |+......|+++.+.|++.|+++
T Consensus       543 ~~-g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         543 PQ-GSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CC-CCcCcCCcceecHHHHHHHHHHh
Confidence            85 55544589999999999999876

>PHA02278 thioredoxin-like protein

Probab=98.43  E-value=2.2e-06  Score=69.43  Aligned_cols=83  Identities=16%  Similarity=0.180  Sum_probs=63.5

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCCh--hHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTS--EGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~--EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      ++++.++|+++.+||.+|+.|.+      .+.++-.+   ..-|+.+++|..  +...++..|++.+.|+++++.  .|+
T Consensus        12 ~~~~~vvV~F~A~WCgpCk~m~p------~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G~   83 (103)
T PHA02278         12 RQKKDVIVMITQDNCGKCEILKS------VIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DGQ   83 (103)
T ss_pred             hCCCcEEEEEECCCCHHHHhHHH------HHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CCE
Confidence            58999999999999999999964      33333322   223566666653  245689999999999999998  499


Q ss_pred             eEEEecCCCChHHHHH
Q 021440          209 KICSWCGMINPQPLGE  224 (312)
Q Consensus       209 ~v~~~~G~~~~~~fl~  224 (312)
                      .+....|..+++.+.+
T Consensus        84 ~v~~~~G~~~~~~l~~   99 (103)
T PHA02278         84 LVKKYEDQVTPMQLQE   99 (103)
T ss_pred             EEEEEeCCCCHHHHHh
Confidence            9999999887776543

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.42  E-value=1.7e-06  Score=67.37  Aligned_cols=92  Identities=14%  Similarity=0.232  Sum_probs=68.3

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      +|++++..+.  +|.+||+++.+||..|+.|.+.+   +.+.+-+..++.|+.++.+  +-..++..|++..+|++.|+.
T Consensus         4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~l---~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~   76 (97)
T cd02984           4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQVF---EELAKEAFPSVLFLSIEAE--ELPEISEKFEITAVPTFVFFR   76 (97)
T ss_pred             HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHHH---HHHHHHhCCceEEEEEccc--cCHHHHHhcCCccccEEEEEE
Confidence            4666666664  79999999999999999996632   2333333457888888665  345688999999999999997


Q ss_pred             CCCCeeEEEecCCCChHHHHHH
Q 021440          204 PITGQKICSWCGMINPQPLGEM  225 (312)
Q Consensus       204 prTGe~v~~~~G~~~~~~fl~~  225 (312)
                        .|+.+....|. .++.+.+.
T Consensus        77 --~g~~~~~~~g~-~~~~l~~~   95 (97)
T cd02984          77 --NGTIVDRVSGA-DPKELAKK   95 (97)
T ss_pred             --CCEEEEEEeCC-CHHHHHHh
Confidence              48888888885 45555443

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.42  E-value=1.7e-06  Score=66.28  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=70.9

Q ss_pred             HHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh--hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCC
Q 021440          128 AKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI  205 (312)
Q Consensus       128 A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i--~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdpr  205 (312)
                      ....+.++++.+||++.++||..|+.+...+   ..+.+-+  +.++.|..++.+.  ...++..|++..+|++.++++.
T Consensus         7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEY---EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             HHHHHHhCCCcEEEEEECCCCHHHHhhhHHH---HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCC
Confidence            4455666677999999999999999997643   3455556  5778888887665  6688999999999999999973


Q ss_pred             CCeeEEEecCCCChHHHHH
Q 021440          206 TGQKICSWCGMINPQPLGE  224 (312)
Q Consensus       206 TGe~v~~~~G~~~~~~fl~  224 (312)
                       |..+..+.|..+++++++
T Consensus        82 -~~~~~~~~g~~~~~~i~~   99 (101)
T cd02961          82 -SKEPVKYEGPRTLESLVE   99 (101)
T ss_pred             -CcccccCCCCcCHHHHHh
Confidence             466777888888877654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.41  E-value=3.5e-06  Score=67.32  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=65.8

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      +.+.+|.++|+++++||.+|+.+...+   ..+.+-.+. +..|..++.|.   ...++.|++..+|++.|+.  .|+.+
T Consensus        13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l---~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~--~g~~~   84 (102)
T cd02948          13 LLSNKGLTVVDVYQEWCGPCKAVVSLF---KKIKNELGDDLLHFATAEADT---IDTLKRYRGKCEPTFLFYK--NGELV   84 (102)
T ss_pred             HHccCCeEEEEEECCcCHhHHHHhHHH---HHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEE--CCEEE
Confidence            345799999999999999999996543   334443443 35677787773   3578999999999998886  59999


Q ss_pred             EEecCCCChHHHHHHHH
Q 021440          211 CSWCGMINPQPLGEMLL  227 (312)
Q Consensus       211 ~~~~G~~~~~~fl~~L~  227 (312)
                      ....|. +++.+.+.|.
T Consensus        85 ~~~~G~-~~~~~~~~i~  100 (102)
T cd02948          85 AVIRGA-NAPLLNKTIT  100 (102)
T ss_pred             EEEecC-ChHHHHHHHh
Confidence            888885 7777666654

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.41  E-value=2.6e-06  Score=73.11  Aligned_cols=102  Identities=10%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--c-EEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--N-FIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--n-FIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ...|++|+..+  .+|+++|++..+||.+|++|      +|-+.++-.+  + ..|+.+|+|  +...+++.|.+.+.|.
T Consensus        11 ~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m------~p~l~~la~~~~~~~~~~kVDVD--e~~dla~~y~I~~~~t   80 (142)
T PLN00410         11 GWAVDQAILAE--EERLVVIRFGHDWDETCMQM------DEVLASVAETIKNFAVIYLVDIT--EVPDFNTMYELYDPCT   80 (142)
T ss_pred             HHHHHHHHHhc--CCCEEEEEEECCCChhHHHH------HHHHHHHHHHcCCceEEEEEECC--CCHHHHHHcCccCCCc
Confidence            44577777644  78999999999999999999      3445555443  3 556888887  4558999999987766


Q ss_pred             EE-EEeCCCCe-eEEEecC--------CCChHHHHHHHHHHHhhCCC
Q 021440          199 VL-VIDPITGQ-KICSWCG--------MINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       199 i~-IIdprTGe-~v~~~~G--------~~~~~~fl~~L~~fl~~~~~  235 (312)
                      +. +.-  .|+ +++...|        ..+.++|++.+..++.....
T Consensus        81 ~~~ffk--~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~  125 (142)
T PLN00410         81 VMFFFR--NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARK  125 (142)
T ss_pred             EEEEEE--CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhc
Confidence            66 554  577 6666677        56889999999999876543

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.37  E-value=2.6e-06  Score=67.51  Aligned_cols=93  Identities=13%  Similarity=0.086  Sum_probs=68.0

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++.+   +..++.+||+++++||..|+.|...+   +.+.+-++.++.|..++.+.  ...+++.|++..||++.++
T Consensus         9 ~~f~~~i---~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~   80 (104)
T cd03004           9 EDFPELV---LNRKEPWLVDFYAPWCGPCQALLPEL---RKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLY   80 (104)
T ss_pred             HHHHHHH---hcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence            3565554   34677999999999999999996422   22333334457788887765  4568899999999999999


Q ss_pred             eCCCCeeEEEecCCCC-hHHHHH
Q 021440          203 DPITGQKICSWCGMIN-PQPLGE  224 (312)
Q Consensus       203 dprTGe~v~~~~G~~~-~~~fl~  224 (312)
                      .. .|+.+..+.|..+ .+++.+
T Consensus        81 ~~-g~~~~~~~~G~~~~~~~l~~  102 (104)
T cd03004          81 PG-NASKYHSYNGWHRDADSILE  102 (104)
T ss_pred             cC-CCCCceEccCCCCCHHHHHh
Confidence            85 3477888999876 776543

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK09381 trxA thioredoxin; Provisional

Probab=98.36  E-value=5.2e-06  Score=66.46  Aligned_cols=97  Identities=18%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      +|.+..   .+.+++++|+++++||..|+.+...+   +.+.+-.+.++.|..++.+...  .++..|++..+|+++|+.
T Consensus        12 ~~~~~v---~~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~   83 (109)
T PRK09381         12 SFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFK   83 (109)
T ss_pred             hHHHHH---hcCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCCh--hHHHhCCCCcCCEEEEEe
Confidence            355444   34689999999999999999996433   2333344455777877776543  467889999999999996


Q ss_pred             CCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          204 PITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       204 prTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                        .|+.+....|..+.+++.+.|...|
T Consensus        84 --~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         84 --NGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             --CCeEEEEecCCCCHHHHHHHHHHhc
Confidence              5888888899888877666655543

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.34  E-value=3.5e-06  Score=67.17  Aligned_cols=96  Identities=9%  Similarity=0.072  Sum_probs=68.9

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      +++++.+.+++ ++.+||+++.+||..|+.+... |.  .+.+-++   .++.+..++.+.  ...+++.|++..+|++.
T Consensus         4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~   77 (104)
T cd03000           4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEPV-WN--EVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIK   77 (104)
T ss_pred             echhhhhhhcc-CCeEEEEEECCCCHHHHhhChH-HH--HHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEE
Confidence            56677777654 6788999999999999999864 32  3444443   247777776654  34678899999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      ++..  | .+..+.|..+.+++.+.+.+
T Consensus        78 l~~~--~-~~~~~~G~~~~~~l~~~~~~  102 (104)
T cd03000          78 LLKG--D-LAYNYRGPRTKDDIVEFANR  102 (104)
T ss_pred             EEcC--C-CceeecCCCCHHHHHHHHHh
Confidence            9963  4 34567888787776555543

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.34  E-value=4e-06  Score=65.31  Aligned_cols=94  Identities=13%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      +|++++    .+++.++|+++++||..|+.|- ..|  +.+.+-++.  ++.|..++  ..+...++..|++..+|++++
T Consensus         5 ~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~i~~~P~~~~   75 (102)
T TIGR01126         5 NFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAKVD--ATAEKDLASRFGVSGFPTIKF   75 (102)
T ss_pred             hHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEEEE--ccchHHHHHhCCCCcCCEEEE
Confidence            455554    3799999999999999999984 344  345555555  56666654  445678889999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      +++  |+.+..+.|..+.+.+...|.+
T Consensus        76 ~~~--~~~~~~~~g~~~~~~l~~~i~~  100 (102)
T TIGR01126        76 FPK--GKKPVDYEGGRDLEAIVEFVNE  100 (102)
T ss_pred             ecC--CCcceeecCCCCHHHHHHHHHh
Confidence            996  3436778998888876555543

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR01068 thioredoxin thioredoxin

Probab=98.32  E-value=1e-05  Score=62.63  Aligned_cols=89  Identities=18%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      +..+|.++|+++++||..|+.+...+   ..+.+-++.++.|+.++.+..  ..+++.|.+..+|+++++.  .|+.+..
T Consensus        11 ~~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g~~~~~   83 (101)
T TIGR01068        11 ASSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK--NGKEVDR   83 (101)
T ss_pred             hhcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe--CCcEeee
Confidence            34578999999999999999997643   344444566788888877654  3578899999999999995  5887777


Q ss_pred             ecCCCChHHHHHHHHH
Q 021440          213 WCGMINPQPLGEMLLP  228 (312)
Q Consensus       213 ~~G~~~~~~fl~~L~~  228 (312)
                      ..|..+.+++.+.|.+
T Consensus        84 ~~g~~~~~~l~~~l~~   99 (101)
T TIGR01068        84 SVGALPKAALKQLINK   99 (101)
T ss_pred             ecCCCCHHHHHHHHHh
Confidence            8888887776666654

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.30  E-value=9e-06  Score=67.35  Aligned_cols=85  Identities=11%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      .++.++|+++.+||.+|++|.      +.+.++..+   ...|+.+|+|.  -..++..|++.+.|+++++-  .|+.+.
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk--~G~~v~   82 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFF--RNKHMK   82 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEE--CCEEEE
Confidence            689999999999999999994      555555544   34688888775  45789999999999999998  499887


Q ss_pred             EecCC---------C-ChHHHHHHHHHH
Q 021440          212 SWCGM---------I-NPQPLGEMLLPF  229 (312)
Q Consensus       212 ~~~G~---------~-~~~~fl~~L~~f  229 (312)
                      ...|.         + +.++||+.+..+
T Consensus        83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02954          83 IDLGTGNNNKINWVFEDKQEFIDIIETI  110 (114)
T ss_pred             EEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence            76553         2 556777665543

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.30  E-value=2.9e-06  Score=67.95  Aligned_cols=85  Identities=13%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      |...+|.+||+++.+||.+|+.|...+   +++.+..+ .+.|..++.+. +...++..|++..||++.+++.  | .+.
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l---~~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~~~   85 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHF---NALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-PRV   85 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHH---HHHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-cee
Confidence            457899999999999999999995422   12333333 46777776552 3357889999999999999985  5 677


Q ss_pred             EecCCCChHHHHH
Q 021440          212 SWCGMINPQPLGE  224 (312)
Q Consensus       212 ~~~G~~~~~~fl~  224 (312)
                      .+.|..+.+.+++
T Consensus        86 ~~~G~~~~~~l~~   98 (100)
T cd02999          86 RYNGTRTLDSLAA   98 (100)
T ss_pred             EecCCCCHHHHHh
Confidence            7899888776554

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.30  E-value=7.3e-06  Score=61.38  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK  209 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~  209 (312)
                      +-++++.+||++.++||..|+.+.+      .+.++.+  .++.|..++.+.  ...++..|++..+|+++++.  .|+.
T Consensus         6 ~~~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g~~   75 (93)
T cd02947           6 LIKSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NGKE   75 (93)
T ss_pred             HHhcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CCEE
Confidence            3444499999999999999999965      3344443  678888887665  55688899999999999997  4888


Q ss_pred             EEEecCCCChHHHHHHH
Q 021440          210 ICSWCGMINPQPLGEML  226 (312)
Q Consensus       210 v~~~~G~~~~~~fl~~L  226 (312)
                      +..+.|..+.+.+...|
T Consensus        76 ~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          76 VDRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEEecCCCHHHHHHHh
Confidence            88899988776655443

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.30  E-value=4.4e-06  Score=66.05  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++.+    .++|.+||+++++||..|+.|...+   ..+.+-++.++.|..++.+..  ..+++.|++..||++.++
T Consensus         9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~   79 (101)
T cd03003           9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTW---REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVF   79 (101)
T ss_pred             hhHHHHh----cCCCeEEEEEECCCChHHHHhHHHH---HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEE
Confidence            3566554    3559999999999999999996532   234445566788888888753  568999999999999998


Q ss_pred             eCCCCeeEEEecCCCChHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLG  223 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl  223 (312)
                      .  .|+.+..+.|..+.+.+.
T Consensus        80 ~--~g~~~~~~~G~~~~~~l~   98 (101)
T cd03003          80 P--SGMNPEKYYGDRSKESLV   98 (101)
T ss_pred             c--CCCCcccCCCCCCHHHHH
Confidence            4  588777888988877654

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.27  E-value=2.2e-06  Score=69.72  Aligned_cols=94  Identities=17%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             HHHHHHcCCeEEEEeecCCCcccchhhcccC----------------CCHHHHHHhhccEEEEEeccCChhHHHHHHhcC
Q 021440          129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTW----------------GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN  192 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw----------------~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~  192 (312)
                      ...+...+|.++|++..+||..|+.+.+.+=                +.+.+.++++++-+-|.+..|  +...+++.|+
T Consensus        13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~   90 (123)
T cd03011          13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWG   90 (123)
T ss_pred             eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCC
Confidence            3344456699999999999999999853331                235566666665444444333  2246888999


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      +..+|++.|||+ .| ....+.|..+++++.+++
T Consensus        91 i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~  122 (123)
T cd03011          91 VSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL  122 (123)
T ss_pred             CCcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence            999999999997 46 777889999999887764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.27  E-value=8e-06  Score=65.43  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc------cEEEEEeccCChhHHHHHHhcCCCC
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~------nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      ..+|++++    +.++++||+++++||..|+.|...+ .  .+.+.+++      ++.|..++.+..  ..+++.|++.+
T Consensus         8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~-~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~   78 (108)
T cd02996           8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIF-E--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINK   78 (108)
T ss_pred             HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHH-H--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCc
Confidence            34566544    5678999999999999999997643 1  22222221      477888887764  46899999999


Q ss_pred             CCeEEEEeCCCCee-EEEecCCCChHHHHH
Q 021440          196 IPAVLVIDPITGQK-ICSWCGMINPQPLGE  224 (312)
Q Consensus       196 ~P~i~IIdprTGe~-v~~~~G~~~~~~fl~  224 (312)
                      ||++.++-  .|+. ...+.|..+.+++++
T Consensus        79 ~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~  106 (108)
T cd02996          79 YPTLKLFR--NGMMMKREYRGQRSVEALAE  106 (108)
T ss_pred             CCEEEEEe--CCcCcceecCCCCCHHHHHh
Confidence            99999985  4763 466788777776554

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PTZ00051 thioredoxin; Provisional

Probab=98.22  E-value=1.2e-05  Score=62.70  Aligned_cols=84  Identities=17%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeC
Q 021440          127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDP  204 (312)
Q Consensus       127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdp  204 (312)
                      +.+....+.+++++|+++.+||..|+.+..      .+.++.++  ++.|..++.+  +...++..|++..+|+++|+. 
T Consensus         9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~-   79 (98)
T PTZ00051          9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK-   79 (98)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-
Confidence            334445678999999999999999999954      33343333  4677777655  456789999999999988774 


Q ss_pred             CCCeeEEEecCCCChHH
Q 021440          205 ITGQKICSWCGMINPQP  221 (312)
Q Consensus       205 rTGe~v~~~~G~~~~~~  221 (312)
                       .|+.+..+.|. .+++
T Consensus        80 -~g~~~~~~~G~-~~~~   94 (98)
T PTZ00051         80 -NGSVVDTLLGA-NDEA   94 (98)
T ss_pred             -CCeEEEEEeCC-CHHH
Confidence             69999889885 4443

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.22  E-value=5.5e-06  Score=64.85  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      ..+..+|.++|+++++||..|+.+...+   ..+.+.++  .++.|..++.+.+ ...+++.|++..+|++.++++ .|+
T Consensus        13 ~~~~~~~~~~v~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~-~~~   87 (105)
T cd02998          13 VVGDDKKDVLVEFYAPWCGHCKNLAPEY---EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPK-GST   87 (105)
T ss_pred             HhcCCCCcEEEEEECCCCHHHHhhChHH---HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeC-CCC
Confidence            3455678999999999999999995432   23333333  4688888876664 567899999999999999986 356


Q ss_pred             eEEEecCCCChHHHHH
Q 021440          209 KICSWCGMINPQPLGE  224 (312)
Q Consensus       209 ~v~~~~G~~~~~~fl~  224 (312)
                      ....+.|..+.+++.+
T Consensus        88 ~~~~~~g~~~~~~l~~  103 (105)
T cd02998          88 EPVKYEGGRDLEDLVK  103 (105)
T ss_pred             CccccCCccCHHHHHh
Confidence            6667888877776654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.22  E-value=1e-05  Score=63.76  Aligned_cols=91  Identities=7%  Similarity=0.120  Sum_probs=65.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ..+|++++     +++| ||+++.+||.+|+.+...+ .  .+.+..+ .++.|..++.+..  ..++..|++..||++.
T Consensus         8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~~-~--~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~   76 (101)
T cd02994           8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPEW-E--EFADWSDDLGINVAKVDVTQE--PGLSGRFFVTALPTIY   76 (101)
T ss_pred             hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHHH-H--HHHHhhccCCeEEEEEEccCC--HhHHHHcCCcccCEEE
Confidence            45677654     3556 6999999999999997642 2  3333333 2588888887754  3578999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      ++.  .|+ +..+.|..+.+++.+.|
T Consensus        77 ~~~--~g~-~~~~~G~~~~~~l~~~i   99 (101)
T cd02994          77 HAK--DGV-FRRYQGPRDKEDLISFI   99 (101)
T ss_pred             EeC--CCC-EEEecCCCCHHHHHHHH
Confidence            873  576 46788988877665544

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.21  E-value=7.8e-06  Score=64.00  Aligned_cols=85  Identities=19%  Similarity=0.164  Sum_probs=65.1

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe-
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ-  208 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe-  208 (312)
                      .++.+|.+||+++++||..|+.|...+   ..+.+.++.  ++.|..+|.+..   .++..|.+..+|++.++.+  |+ 
T Consensus        14 i~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~--~~~   85 (104)
T cd02995          14 VLDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFFPA--GDK   85 (104)
T ss_pred             HhCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEEcC--CCc
Confidence            345568999999999999999997654   556666655  699999988764   4677888899999999974  44 


Q ss_pred             -eEEEecCCCChHHHHH
Q 021440          209 -KICSWCGMINPQPLGE  224 (312)
Q Consensus       209 -~v~~~~G~~~~~~fl~  224 (312)
                       ....+.|..+.+.|++
T Consensus        86 ~~~~~~~g~~~~~~l~~  102 (104)
T cd02995          86 SNPIKYEGDRTLEDLIK  102 (104)
T ss_pred             CCceEccCCcCHHHHHh
Confidence             4556788877776654

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.19  E-value=1.4e-05  Score=70.69  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hh-HHH-------------------HHHhcC
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SE-GWK-------------------VCSFYN  192 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~E-G~~-------------------~~~~Y~  192 (312)
                      .++|+++||+..+||.+|+..-      +.+.++-+.++.++.++.+. .+ ..+                   +...|.
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g  139 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG  139 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence            3689999999999999999874      34556655567677776543 22 222                   334677


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +..+|+..|||+ .|+.+.++.|.++.+++-..+...+..
T Consensus       140 v~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~  178 (185)
T PRK15412        140 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK  178 (185)
T ss_pred             CCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence            788999999997 599999999999988887777777754

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.18  E-value=1.7e-05  Score=62.06  Aligned_cols=89  Identities=12%  Similarity=0.165  Sum_probs=64.6

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      .+|++++.    .+ ++||+++++||..|+.+...+ .  .+.+-.+.   ++.|..++.+...  .+++.|++..+|++
T Consensus         8 ~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~-~--~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~   77 (102)
T cd03005           8 DNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTW-E--QLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTL   77 (102)
T ss_pred             HHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHH-H--HHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEE
Confidence            34666653    23 499999999999999996542 2  23333433   6888888766543  67889999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLG  223 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl  223 (312)
                      .++.  .|+.+..+.|..+.+++.
T Consensus        78 ~~~~--~g~~~~~~~G~~~~~~l~   99 (102)
T cd03005          78 LLFK--DGEKVDKYKGTRDLDSLK   99 (102)
T ss_pred             EEEe--CCCeeeEeeCCCCHHHHH
Confidence            9995  477777889988876643

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR02740 TraF-like TraF-like protein

Probab=98.16  E-value=2.9e-05  Score=73.22  Aligned_cols=94  Identities=13%  Similarity=0.007  Sum_probs=73.0

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChh---------HHHHHHhcCCCCCCeEEE
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSE---------GWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~E---------G~~~~~~Y~~~~~P~i~I  201 (312)
                      +.-.+|++||++..+||..|+.+      .+.+.++.++ ++.+..+++|...         ...+++.|++..+|++.|
T Consensus       162 ~~l~~k~~Lv~F~AswCp~C~~~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L  235 (271)
T TIGR02740       162 KDLAKKSGLFFFFKSDCPYCHQQ------APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL  235 (271)
T ss_pred             HHhcCCeEEEEEECCCCccHHHH------hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence            44558999999999999999998      4667777765 3666666666421         124678999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +++.+|+...+..|.++.+++.+.+.....
T Consensus       236 v~~~~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       236 ADPDPNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            998766665567799999999988887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.11  E-value=3.4e-05  Score=68.18  Aligned_cols=98  Identities=18%  Similarity=0.214  Sum_probs=70.8

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ..|.+++..+. .+++++|+|+.+||.+|+.|+.      .+.++..+  +..|+.++++..   .++..|++...|+|+
T Consensus        71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~------~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll  140 (175)
T cd02987          71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNS------SLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL  140 (175)
T ss_pred             HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHH------HHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence            45555553322 2469999999999999999964      45555554  478899988854   788999999999999


Q ss_pred             EEeCCCCeeEEEecCCC---ChHHHHHHHHHHHhh
Q 021440          201 VIDPITGQKICSWCGMI---NPQPLGEMLLPFMDR  232 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~---~~~~fl~~L~~fl~~  232 (312)
                      |+-  .|+.+..+.|..   ..+-..+.|..||.+
T Consensus       141 lyk--~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         141 VYK--GGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             EEE--CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            997  499998887753   123335566766654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.09  E-value=1.7e-05  Score=68.84  Aligned_cols=93  Identities=12%  Similarity=0.085  Sum_probs=65.2

Q ss_pred             HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChh-----------HHHHHHhc---CCCC
Q 021440          131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSE-----------GWKVCSFY---NMDS  195 (312)
Q Consensus       131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~E-----------G~~~~~~Y---~~~~  195 (312)
                      ......++.||||..+||.+|+..      .+.+.++-++ +|.+..++.|...           +.....+|   .+..
T Consensus        45 ~~~~l~~~~lvnFWAsWCppCr~e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~  118 (153)
T TIGR02738        45 RHANQDDYALVFFYQSTCPYCHQF------APVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV  118 (153)
T ss_pred             hhhhcCCCEEEEEECCCChhHHHH------HHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC
Confidence            334455777999999999999998      4666666655 3555555555321           22223455   7789


Q ss_pred             CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +|+..|||+..|..+.+..|.++.+++.+.+.+.
T Consensus       119 iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       119 TPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence            9999999986454555789999988887777654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.08  E-value=1.9e-05  Score=64.21  Aligned_cols=82  Identities=13%  Similarity=0.241  Sum_probs=60.7

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ..|.+.+..+. .+++++|+++++||.+|+.|..      .+.++..+  +..|+.++.+..   .+++.|++..+|+++
T Consensus        12 ~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~------~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~   81 (113)
T cd02957          12 KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDS------HLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLL   81 (113)
T ss_pred             HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHH------HHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEE
Confidence            34555553221 2589999999999999999954      44444443  356777777644   889999999999999


Q ss_pred             EEeCCCCeeEEEecCC
Q 021440          201 VIDPITGQKICSWCGM  216 (312)
Q Consensus       201 IIdprTGe~v~~~~G~  216 (312)
                      ++.  .|+.+..+.|.
T Consensus        82 ~f~--~G~~v~~~~G~   95 (113)
T cd02957          82 VYK--NGELIDNIVGF   95 (113)
T ss_pred             EEE--CCEEEEEEecH
Confidence            997  49999888774

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.06  E-value=4.5e-05  Score=59.73  Aligned_cols=86  Identities=12%  Similarity=0.037  Sum_probs=61.9

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      .+.++.+||+++++||..|+.+...+   ..+.+-+...+.|..++.+  +...+++.|++..+|++.++++. ......
T Consensus        15 ~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~-~~~~~~   88 (103)
T cd03001          15 LNSDDVWLVEFYAPWCGHCKNLAPEW---KKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAG-KNSPQD   88 (103)
T ss_pred             hcCCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCC-Ccceee
Confidence            35577899999999999999995432   2333334445666666554  45578899999999999999852 244566


Q ss_pred             ecCCCChHHHHH
Q 021440          213 WCGMINPQPLGE  224 (312)
Q Consensus       213 ~~G~~~~~~fl~  224 (312)
                      +.|..+.+.+++
T Consensus        89 ~~g~~~~~~l~~  100 (103)
T cd03001          89 YQGGRTAKAIVS  100 (103)
T ss_pred             cCCCCCHHHHHH
Confidence            888887776654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.04  E-value=4.6e-05  Score=65.51  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------HHHHHHhcCC
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------GWKVCSFYNM  193 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------G~~~~~~Y~~  193 (312)
                      -++|+++|++.++||..|+...+.+  +....++-+.++.++.++.+...                    ...+.+.|.+
T Consensus        59 ~~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  136 (173)
T PRK03147         59 LKGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV  136 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence            3579999999999999998864332  22233333445777777765432                    2356788999


Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      ..+|++.|||+ .|+.+..+.|..+.+++.+.|.+
T Consensus       137 ~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        137 GPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             CCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence            99999999997 59999899999888887776654

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.01  E-value=2.6e-05  Score=63.92  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=58.9

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCC---------------------hhHHHH
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDT---------------------SEGWKV  187 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds---------------------~EG~~~  187 (312)
                      ..+.-++|+++|++.++||..|+.+-.      .+.++-++. +.++.++.+.                     .....+
T Consensus        19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   92 (127)
T cd03010          19 TSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRV   92 (127)
T ss_pred             cHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchH
Confidence            334446899999999999999998643      233333322 4444443211                     123356


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHH
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQP  221 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~  221 (312)
                      +..|++..+|+..|||+ .|+.+.+|.|.++.+.
T Consensus        93 ~~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~  125 (127)
T cd03010          93 GIDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV  125 (127)
T ss_pred             HHhcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence            77889999999999997 5999999999887664

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.99  E-value=6.4e-05  Score=69.17  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=75.3

Q ss_pred             ccccHHHHHHHHH-HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          121 FNGSFEKAKDAAL-AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       121 ~~gsf~~A~~~Ak-~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      -..+|++.....+ ..++.+||+++.+||..|+.|....   +++.+-++..+.|..+|.+  +...+++.|++..||++
T Consensus        36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~---e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl  110 (224)
T PTZ00443         36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAW---ERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTL  110 (224)
T ss_pred             CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEE
Confidence            3567887665543 3468889999999999999997753   4555556666667766554  45678999999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      .+++  .|+.+....|..+.+++.+-+.+-+
T Consensus       111 ~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443        111 LLFD--KGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             EEEE--CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            9999  4887766678777776655444433

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.97  E-value=6.6e-05  Score=61.46  Aligned_cols=77  Identities=9%  Similarity=0.203  Sum_probs=59.4

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCC
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG  207 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTG  207 (312)
                      ..+.+++++++|+++.+||.+|+.|.      +.+.++.++  +.-|+.++.+.  -..+++.|.+...|+++++.  .|
T Consensus        16 ~~~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk--~G   85 (113)
T cd02989          16 FEIVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFK--NG   85 (113)
T ss_pred             HHHHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEE--CC
Confidence            33345679999999999999999995      445555543  36777776555  44688999999999999998  48


Q ss_pred             eeEEEecCC
Q 021440          208 QKICSWCGM  216 (312)
Q Consensus       208 e~v~~~~G~  216 (312)
                      +.+..+.|.
T Consensus        86 ~~v~~~~g~   94 (113)
T cd02989          86 KTVDRIVGF   94 (113)
T ss_pred             EEEEEEECc
Confidence            988887775

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.97  E-value=7.3e-05  Score=62.39  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=73.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcc--cc--hhhcccCCCHHHHHHh-hccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFS--SL--MLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~--c~--~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      .+|++.   =++.++.++|++...||.+  |+  ++.+.+  .+.-.+++ .....|..+|++.  ...+++.|++.++|
T Consensus        17 ~nF~~~---v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~--~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~iP   89 (120)
T cd03065          17 KNYKQV---LKKYDVLCLLYHEPVESDKEAQKQFQMEELV--LELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEED   89 (120)
T ss_pred             hhHHHH---HHhCCceEEEEECCCcCChhhChhhcchhhH--HHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCcccc
Confidence            445544   4566779999999999987  88  553222  22334444 3468899997774  47899999999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +|.++.  .|+.+. +.|..+.+.+++.|.+.+
T Consensus        90 Tl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          90 SIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             EEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            999997  598776 999999998888887655

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.93  E-value=0.00012  Score=59.88  Aligned_cols=92  Identities=10%  Similarity=0.078  Sum_probs=66.2

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCC
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG  207 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTG  207 (312)
                      ..+.+.++-++|+++.+||.+|+.+.+      -+.++..  ...-|..++.+  +...++..|++...|+++|.+.  |
T Consensus        16 ~~~l~~~~~vvv~f~a~wC~~C~~~~~------~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~--g   85 (113)
T cd02975          16 FKEMKNPVDLVVFSSKEGCQYCEVTKQ------LLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQD--G   85 (113)
T ss_pred             HHHhCCCeEEEEEeCCCCCCChHHHHH------HHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeC--C
Confidence            344566778999999999999999854      2233332  33456667666  4568999999999999999984  3


Q ss_pred             eeEE--EecCCCChHHHHHHHHHHHh
Q 021440          208 QKIC--SWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       208 e~v~--~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ....  .+.|..+..+|.+.|...++
T Consensus        86 ~~~~~~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          86 GKDGGIRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             eecceEEEEecCchHHHHHHHHHHHh
Confidence            2222  47788888888887777654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.89  E-value=0.00019  Score=59.77  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh---------hHHHHHHhcCC
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---------EGWKVCSFYNM  193 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~---------EG~~~~~~Y~~  193 (312)
                      +.++..+. -+.++..+|+|..+||.+|++|      .|.+.++++++ .-++.++++..         +-..+...|++
T Consensus        12 t~~~~~~~-i~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i   84 (122)
T TIGR01295        12 TVVRALEA-LDKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI   84 (122)
T ss_pred             CHHHHHHH-HHcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence            34443333 3568889999999999999999      57778888764 44666666632         33456677765


Q ss_pred             C----CCCeEEEEeCCCCeeEEEecCC-CChHHHHHHHHHHH
Q 021440          194 D----SIPAVLVIDPITGQKICSWCGM-INPQPLGEMLLPFM  230 (312)
Q Consensus       194 ~----~~P~i~IIdprTGe~v~~~~G~-~~~~~fl~~L~~fl  230 (312)
                      .    ..|+++++.  .|+.+.++.|. .+.++    |.+|+
T Consensus        85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~----l~~~~  120 (122)
T TIGR01295        85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQE----LQDIA  120 (122)
T ss_pred             cccCCCCCEEEEEe--CCeEEEEEeCCCCCHHH----HHHHh
Confidence            4    499999998  49999998885 34444    55554

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=97.87  E-value=3.7e-05  Score=59.74  Aligned_cols=80  Identities=14%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCCh--h-------------------
Q 021440          129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTS--E-------------------  183 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~--E-------------------  183 (312)
                      ...++..+|++||++..+||..|+...      +.+.++.+    .++.++.++.+..  +                   
T Consensus        12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (116)
T cd02966          12 VSLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP   85 (116)
T ss_pred             eehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence            344555589999999999999998753      34444433    3566777776652  2                   


Q ss_pred             HHHHHHhcCCCCCCeEEEEeCCCCeeEEEecC
Q 021440          184 GWKVCSFYNMDSIPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G  215 (312)
                      +..+...|++..+|++.|||| .|+.+..+.|
T Consensus        86 ~~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g  116 (116)
T cd02966          86 DGELAKAYGVRGLPTTFLIDR-DGRIRARHVG  116 (116)
T ss_pred             cchHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence            256788889999999999998 5888877765

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.86  E-value=8.1e-05  Score=61.44  Aligned_cols=74  Identities=12%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc------cEEEEEeccCChh----------------------
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTSE----------------------  183 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~------nFIfwq~~~ds~E----------------------  183 (312)
                      +.-++|++||++..+||.+|+.+..      .+.++.++      ++.++.++.|..+                      
T Consensus        14 ~~~~gk~vll~Fwa~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T cd03009          14 SSLEGKTVGLYFSASWCPPCRAFTP------KLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRER   87 (131)
T ss_pred             HHhCCcEEEEEEECCCChHHHHHhH------HHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHH
Confidence            3346899999999999999998753      44443322      4555555555332                      


Q ss_pred             HHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          184 GWKVCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      ...++..|++..+|++.|||+ .|+.+..
T Consensus        88 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~  115 (131)
T cd03009          88 RSRLNRTFKIEGIPTLIILDA-DGEVVTT  115 (131)
T ss_pred             HHHHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence            235777899999999999997 5886644

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.80  E-value=9.6e-05  Score=72.76  Aligned_cols=98  Identities=9%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      .+|++++    +++|.+||+++++||..|+.|...+   ..+.+.++   .++.|..++.+.  ...+++.|++..||++
T Consensus         9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~   79 (462)
T TIGR01130         9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTL   79 (462)
T ss_pred             HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEE
Confidence            3455554    5688999999999999999997643   33444443   237888876654  4689999999999999


Q ss_pred             EEEeCCCCee-EEEecCCCChHHHHHHHHHHHh
Q 021440          200 LVIDPITGQK-ICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       200 ~IIdprTGe~-v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      .++.  .|+. +..+.|..+.+.+.+-+.+.+.
T Consensus        80 ~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~~  110 (462)
T TIGR01130        80 KIFR--NGEDSVSDYNGPRDADGIVKYMKKQSG  110 (462)
T ss_pred             EEEe--CCccceeEecCCCCHHHHHHHHHHhcC
Confidence            9996  3666 7778998888887776666654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=97.78  E-value=0.0001  Score=73.50  Aligned_cols=98  Identities=9%  Similarity=0.174  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      .+|++++    ++++.+||+++++||..|+.|...+-   .+.+.++   .++.|..++.+  +...++..|++..||++
T Consensus        40 ~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~--~~~~l~~~~~i~~~Pt~  110 (477)
T PTZ00102         40 STFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDAT--EEMELAQEFGVRGYPTI  110 (477)
T ss_pred             hhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECC--CCHHHHHhcCCCcccEE
Confidence            3455544    56789999999999999999976631   2333333   34788887654  45679999999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      .++..  |..+ .+.|..+++.|++-|.+.+..
T Consensus       111 ~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~~  140 (477)
T PTZ00102        111 KFFNK--GNPV-NYSGGRTADGIVSWIKKLTGP  140 (477)
T ss_pred             EEEEC--CceE-EecCCCCHHHHHHHHHHhhCC
Confidence            99985  5555 789999999888877776543

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.77  E-value=0.00011  Score=57.72  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCC--CCCeEEEEeCCCCeeEEEe
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKICSW  213 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~--~~P~i~IIdprTGe~v~~~  213 (312)
                      +++++|.+.++||.+|..+...+   ++|.+-.+..+.|..+|.+.  ...++..|.+.  .+|++++++..+|.+....
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~   86 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP   86 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence            78999999999999999995433   34444445567888775554  56799999998  9999999997556665444


Q ss_pred             cCCCChHHHHHHHHH
Q 021440          214 CGMINPQPLGEMLLP  228 (312)
Q Consensus       214 ~G~~~~~~fl~~L~~  228 (312)
                      .|..+.+.+.+-|.+
T Consensus        87 ~~~~~~~~l~~fi~~  101 (103)
T cd02982          87 EEELTAESLEEFVED  101 (103)
T ss_pred             ccccCHHHHHHHHHh
Confidence            454566554444433

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.76  E-value=0.00015  Score=73.23  Aligned_cols=114  Identities=10%  Similarity=0.014  Sum_probs=80.1

Q ss_pred             HHhhhcCCCccc-cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHH
Q 021440          108 ILASLYRPPFHV-MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGW  185 (312)
Q Consensus       108 ~La~lfrPP~~l-~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~  185 (312)
                      .-+++|-.+..+ +-..+|++.+.. +..+|.+||+++.+||..|+.|...+   +++.+-++. ++.|..++.|..+-.
T Consensus       343 ~~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD~~~~~  418 (463)
T TIGR00424       343 AVADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRADGDQKE  418 (463)
T ss_pred             ccccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECCCCccH
Confidence            466888666544 456678887643 67899999999999999999997653   445444443 367887887765433


Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEEec-CCCChHHHHHHH
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICSWC-GMINPQPLGEML  226 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~-G~~~~~~fl~~L  226 (312)
                      -.++.|++..||+|.++... +.....+. |.-+.+.|+.-+
T Consensus       419 ~~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv  459 (463)
T TIGR00424       419 FAKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFV  459 (463)
T ss_pred             HHHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHH
Confidence            34578999999999999863 23344565 467787765543

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=97.75  E-value=0.0002  Score=62.08  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=61.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChhHHHHHHhcCCCC---
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSEGWKVCSFYNMDS---  195 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~EG~~~~~~Y~~~~---  195 (312)
                      .+|++.+.  ...++.++|+++.+||.+|+.|..      .+.++.+    .++.|..+|.+...  .+++.|++..   
T Consensus        36 ~~f~~~l~--~~~~~~vvV~Fya~wC~~Ck~l~p------~l~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~  105 (152)
T cd02962          36 KTLEEELE--RDKRVTWLVEFFTTWSPECVNFAP------VFAELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPL  105 (152)
T ss_pred             HHHHHHHH--hcCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCC
Confidence            34555443  245789999999999999999953      4444443    35889999877653  6788889877   


Q ss_pred             ---CCeEEEEeCCCCeeEEEecC
Q 021440          196 ---IPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       196 ---~P~i~IIdprTGe~v~~~~G  215 (312)
                         +|++.+..  .|+.+....|
T Consensus       106 v~~~PT~ilf~--~Gk~v~r~~G  126 (152)
T cd02962         106 SKQLPTIILFQ--GGKEVARRPY  126 (152)
T ss_pred             cCCCCEEEEEE--CCEEEEEEec
Confidence               99999997  5999888776

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.74  E-value=0.00013  Score=59.64  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ..+|++...   ..+|.+||+++++||..|+.|... |.  .+.+-+++   .+.|..++.+......+++.|++..||+
T Consensus         8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~-~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPT-WK--KLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHH-HH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            345665554   445899999999999999999653 32  34444443   3667777766666788999999999999


Q ss_pred             EEEEeCC
Q 021440          199 VLVIDPI  205 (312)
Q Consensus       199 i~IIdpr  205 (312)
                      +.++.+.
T Consensus        82 ~~lf~~~   88 (114)
T cd02992          82 LRYFPPF   88 (114)
T ss_pred             EEEECCC
Confidence            9999863

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=97.64  E-value=0.0003  Score=58.65  Aligned_cols=68  Identities=10%  Similarity=0.089  Sum_probs=54.1

Q ss_pred             cCCeEEEEeec-------CCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChh-----HHHHHHhcCCC-CCCe
Q 021440          135 QDKWLLVNLQS-------TKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSE-----GWKVCSFYNMD-SIPA  198 (312)
Q Consensus       135 ~~KwLLVniq~-------~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~E-----G~~~~~~Y~~~-~~P~  198 (312)
                      ++|+++|++++       +||.+|+++.      +.|.++..+   +..|+.++++...     ...+...|++. ..|+
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~------P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT   93 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAE------PVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT   93 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhc------hhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence            57999999999       9999999994      555555544   6789999987643     46788899998 9999


Q ss_pred             EEEEeCCCCeeE
Q 021440          199 VLVIDPITGQKI  210 (312)
Q Consensus       199 i~IIdprTGe~v  210 (312)
                      +.++.  +|+++
T Consensus        94 ~~~~~--~~~~l  103 (119)
T cd02952          94 LLRWK--TPQRL  103 (119)
T ss_pred             EEEEc--CCcee
Confidence            99995  56554

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=97.64  E-value=0.00026  Score=72.59  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             cCCeEEEEeecCCCcccchhhccc---------------------C----CCHHHHHHhhc-cEEEEEeccCChhHHHHH
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDT---------------------W----GNEAVSQIISV-NFIFWQEYDDTSEGWKVC  188 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDv---------------------w----~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~  188 (312)
                      ++|++||||.++||.+|+.+-..+                     +    ....+++++++ +|..|.+..|.  ...++
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~--~~~la  132 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN--GGTLA  132 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc--cHHHH
Confidence            689999999999999999862111                     0    01223333332 22223333332  44678


Q ss_pred             HhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          189 SFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       189 ~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                      +.|++..+|+++|||+ .|+.+....|.++.+++.+.|+
T Consensus       133 k~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        133 QSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence            8999999999999997 6999999999998877666555

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.60  E-value=0.0012  Score=54.54  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=77.7

Q ss_pred             hHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCC--CcccchhhcccCCCHHHHHHhhc---cEEEEEeccC
Q 021440          106 HDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTK--EFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDD  180 (312)
Q Consensus       106 ~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~--~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~d  180 (312)
                      ..+|.++-+=|-  .-..+|++-.    +.+..++|.++.+|  |.+|..+      .+.+.++.++   .+.|+.++.+
T Consensus         3 ~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i------~P~leela~e~~~~v~f~kVdid   70 (111)
T cd02965           3 VARLQTRHGWPR--VDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDV------AVVLPELLKAFPGRFRAAVVGRA   70 (111)
T ss_pred             hHHHHHhcCCcc--cccccHHHHH----hCCCCEEEEecCCcccCcchhhh------HhHHHHHHHHCCCcEEEEEEECC
Confidence            356666654332  3566788555    67788899999986  9999999      4666666665   3557788777


Q ss_pred             ChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHH
Q 021440          181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLG  223 (312)
Q Consensus       181 s~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl  223 (312)
                      ...  .++..|++.+.|+++++.  .|+.+....|..+.+++.
T Consensus        71 ~~~--~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          71 DEQ--ALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             CCH--HHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence            654  899999999999999998  499999999988877764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PTZ00102 disulphide isomerase; Provisional

Probab=97.56  E-value=0.00018  Score=71.63  Aligned_cols=104  Identities=12%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      +-..+|+++.   .+.+|.+||+++++||..|+.|.. +|.  .+.+..+  .+++|..++.+..+  ..+..|.+..+|
T Consensus       362 l~~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~P  433 (477)
T PTZ00102        362 VVGNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFP  433 (477)
T ss_pred             ecccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccC
Confidence            3345676653   567899999999999999999954 333  2233333  35788888766533  457788899999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      ++.++++ .|+....+.|..+.+.+.+.|.+....
T Consensus       434 t~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        434 TILFVKA-GERTPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             eEEEEEC-CCcceeEecCcCCHHHHHHHHHHcCCC
Confidence            9999986 344445689999988877766665543

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=97.52  E-value=0.00045  Score=57.37  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh---hc---cEEEEEeccCCh------------------
Q 021440          127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII---SV---NFIFWQEYDDTS------------------  182 (312)
Q Consensus       127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i---~~---nFIfwq~~~ds~------------------  182 (312)
                      +-+..+.-++|.+||++..+||.+|+.+-      +.+.++.   ++   ++.++.++.+..                  
T Consensus         8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            34445566789999999999999999863      2333222   22   343443433321                  


Q ss_pred             -----hHHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          183 -----EGWKVCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       183 -----EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                           ....+.+.|++..+|++.|||+ .|+.+..
T Consensus        82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~  115 (132)
T cd02964          82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT  115 (132)
T ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence                 2235667899999999999997 5876644

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.51  E-value=0.00027  Score=60.97  Aligned_cols=80  Identities=11%  Similarity=0.187  Sum_probs=52.7

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhccc------C--------------------CC-HHHHHHhhccEEEE-EeccCChh
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDT------W--------------------GN-EAVSQIISVNFIFW-QEYDDTSE  183 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDv------w--------------------~~-~~V~~~i~~nFIfw-q~~~ds~E  183 (312)
                      +.=++|+++||+.++||.+|..+.-.+      +                    .+ +.+++|++++=+-| .+......
T Consensus        21 s~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~  100 (146)
T cd03008          21 ARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF  100 (146)
T ss_pred             HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH
Confidence            344689999999999999999864222      0                    11 23556665542222 11112223


Q ss_pred             HHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          184 GWKVCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      +..+...|.+..+|+..|||+ .|+.+..
T Consensus       101 ~~~l~~~y~v~~iPt~vlId~-~G~Vv~~  128 (146)
T cd03008         101 RRELEAQFSVEELPTVVVLKP-DGDVLAA  128 (146)
T ss_pred             HHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence            346778899999999999998 5888755

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.51  E-value=0.00078  Score=60.16  Aligned_cols=86  Identities=8%  Similarity=0.037  Sum_probs=67.8

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCCh-----------hHHHHHHhcCC--CCCCeEEEEeCC
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTS-----------EGWKVCSFYNM--DSIPAVLVIDPI  205 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~-----------EG~~~~~~Y~~--~~~P~i~IIdpr  205 (312)
                      ||+|..+||..|+..      .+.++++-++ .|.++.++.|..           .+..+..+|.+  ..+|+..|||+.
T Consensus        73 lV~FwaswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~  146 (181)
T PRK13728         73 VVLFMQGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN  146 (181)
T ss_pred             EEEEECCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence            788999999999998      4667777666 588888877733           23346668884  699999999974


Q ss_pred             CCeeE-EEecCCCChHHHHHHHHHHHhh
Q 021440          206 TGQKI-CSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       206 TGe~v-~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                       |+.+ .++.|.++.+++.+++.+.+..
T Consensus       147 -G~i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        147 -TLEALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             -CcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence             7764 5789999999998888888765

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.46  E-value=0.0017  Score=58.39  Aligned_cols=81  Identities=19%  Similarity=0.317  Sum_probs=58.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc--EEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n--FIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..+|.+....|. .++|++|.|+.+||.+|+.|+      +.+.++..++  .-|+.++++.     .+..|++...|+|
T Consensus        89 ~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTl  156 (192)
T cd02988          89 KPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTI  156 (192)
T ss_pred             HHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEE
Confidence            334554443322 346999999999999999995      4455555443  5677777653     3678999999999


Q ss_pred             EEEeCCCCeeEEEecCC
Q 021440          200 LVIDPITGQKICSWCGM  216 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~  216 (312)
                      +|.-  .|+.+..+.|+
T Consensus       157 liyk--~G~~v~~ivG~  171 (192)
T cd02988         157 LVYR--NGDIVKQFIGL  171 (192)
T ss_pred             EEEE--CCEEEEEEeCc
Confidence            9997  59999887774

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PLN02309 5'-adenylylsulfate reductase

Probab=97.42  E-value=0.00089  Score=67.70  Aligned_cols=113  Identities=11%  Similarity=0.070  Sum_probs=74.0

Q ss_pred             hhhcCCCccc-cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHHHH
Q 021440          110 ASLYRPPFHV-MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKV  187 (312)
Q Consensus       110 a~lfrPP~~l-~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~~~  187 (312)
                      +++|.-+..+ +-..+|++.+. .+..+|.+||+++.+||..|+.|....   +.+.+-++ .++.|..++.+..+ ..+
T Consensus       339 ~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~~---e~LA~~~~~~~V~f~kVD~d~~~-~~l  413 (457)
T PLN02309        339 ADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEASY---EELAEKLAGSGVKVAKFRADGDQ-KEF  413 (457)
T ss_pred             ccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCeEEEEEECCCcc-hHH
Confidence            5677433322 22334554333 357899999999999999999997652   23444343 45999999888332 356


Q ss_pred             HH-hcCCCCCCeEEEEeCCCCeeEEEecC-CCChHHHHHHHHH
Q 021440          188 CS-FYNMDSIPAVLVIDPITGQKICSWCG-MINPQPLGEMLLP  228 (312)
Q Consensus       188 ~~-~Y~~~~~P~i~IIdprTGe~v~~~~G-~~~~~~fl~~L~~  228 (312)
                      +. .|++..||+|.++.+.. .....+.| .-+.+.|+.-+..
T Consensus       414 a~~~~~I~~~PTil~f~~g~-~~~v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        414 AKQELQLGSFPTILLFPKNS-SRPIKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             HHhhCCCceeeEEEEEeCCC-CCeeecCCCCcCHHHHHHHHHH
Confidence            65 69999999999997632 23344654 5677776655543

>smart00804 TAP_C C-terminal domain of vertebrate Tap protein

Probab=97.41  E-value=0.00033  Score=52.13  Aligned_cols=46  Identities=17%  Similarity=0.395  Sum_probs=41.8

Q ss_pred             CCchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            3 SESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         3 ~~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      ..+..+.++|..|+.. ||-+.+=++.+|+.+|||++.|+..|-+..
T Consensus         7 ~~~~~q~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk   52 (63)
T smart00804        7 TLSPEQQEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTELK   52 (63)
T ss_pred             CCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3466789999999999 999999999999999999999999998743

The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.40  E-value=0.00084  Score=74.25  Aligned_cols=93  Identities=12%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc----cEEEEEecc---CC---h-------------------hHH
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYD---DT---S-------------------EGW  185 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~----nFIfwq~~~---ds---~-------------------EG~  185 (312)
                      ++|++|||+..+||.+|+...      |.+.++.++    +|+++.+..   |.   .                   ...
T Consensus       419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~  492 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM  492 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence            689999999999999999864      444444332    377776632   11   0                   122


Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      .+...|.+..+|++.|||+ .|+.+.++.|....+++.+.|...+.-+.
T Consensus       493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~~  540 (1057)
T PLN02919        493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYYG  540 (1057)
T ss_pred             HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhhc
Confidence            4567888999999999997 59999999998888888777777776543

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.35  E-value=0.0019  Score=55.93  Aligned_cols=99  Identities=13%  Similarity=0.115  Sum_probs=64.7

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh---------h------------------HHHH
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS---------E------------------GWKV  187 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~---------E------------------G~~~  187 (312)
                      .+||+||++..+||..|...-+.+  ++...+|-+.++.|+.++.+..         +                  ...+
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~  101 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRL--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV  101 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHH--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence            689999999999999997543222  1222223235677888776542         1                  1134


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEe------c---CCCChHHHHHHHHHHHhhCCCC
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSW------C---GMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~------~---G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      ++.|++...|++.|||+ .|+.+..+      .   +..+.+++.+.|...|...+..
T Consensus       102 ~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  158 (171)
T cd02969         102 AKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP  158 (171)
T ss_pred             HHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence            45667778899999997 58877553      1   1245677888888877776654

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.33  E-value=0.00073  Score=62.69  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=60.5

Q ss_pred             HHHcCCeEEEEeecCCCcccchhh-------cc----------cC----------CCHHHHHHhh-ccEEEEEecc-CCh
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLN-------RD----------TW----------GNEAVSQIIS-VNFIFWQEYD-DTS  182 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~ln-------RD----------vw----------~~~~V~~~i~-~nFIfwq~~~-ds~  182 (312)
                      +.-++|++||++..+||..|...-       ++          |-          ..+++++|+. +.=+-|.+-. ...
T Consensus        95 sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~  174 (236)
T PLN02399         95 SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDV  174 (236)
T ss_pred             HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence            444689999999999999996521       10          11          2246666663 2111122211 112


Q ss_pred             hHHHHHHhcC-------------CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          183 EGWKVCSFYN-------------MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       183 EG~~~~~~Y~-------------~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      .|...+..|+             +...|+..|||+ .|+.++++.|.++++++...|++.|.
T Consensus       175 ~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        175 NGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             CcchhhHHHHHHHHhcCCccCCccccCceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHhc
Confidence            2322211111             233689999996 69999999999999988888887763

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.33  E-value=0.0015  Score=59.17  Aligned_cols=90  Identities=10%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             cCCeEEEEee--cCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          135 QDKWLLVNLQ--STKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       135 ~~KwLLVniq--~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      .++-|++...  .+||.+|+.|.      +.+.++..+  +.-+.-+++|..+...++..|++..+|+++|++.  |+.+
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~------p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~--g~~~   90 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETE------QLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE--GKDG   90 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHH------HHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC--Ceee
Confidence            3455555444  28999999995      344444333  2334445667778999999999999999999984  7776


Q ss_pred             E-EecCCCChHHHHHHHHHHHhh
Q 021440          211 C-SWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       211 ~-~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      . ++.|..+.++|.+.|...+..
T Consensus        91 ~~~~~G~~~~~~l~~~i~~~~~~  113 (215)
T TIGR02187        91 GIRYTGIPAGYEFAALIEDIVRV  113 (215)
T ss_pred             EEEEeecCCHHHHHHHHHHHHHh
Confidence            4 789988888887777777644

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.32  E-value=0.002  Score=60.21  Aligned_cols=93  Identities=13%  Similarity=0.121  Sum_probs=76.8

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh---h------HHHHHHhcCCCCCCeEEEEeCC
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---E------GWKVCSFYNMDSIPAVLVIDPI  205 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~---E------G~~~~~~Y~~~~~P~i~IIdpr  205 (312)
                      ++|=||+++...|.-|+.+      .+-|+.|-+++ |-.+.+++|-.   +      ....+...++..+|.+.+|+|.
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~------aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~  216 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQL------AQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK  216 (248)
T ss_pred             hcceEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence            4799999999999999999      57888888775 88888887741   1      1123367888899999999999


Q ss_pred             CCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          206 TGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       206 TGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ||+..-+-.|.++.+++.+++......+.
T Consensus       217 t~~~~pv~~G~iS~deL~~Ri~~v~t~~~  245 (248)
T PRK13703        217 SGSVRPLSYGFITQDDLAKRFLNVSTDFK  245 (248)
T ss_pred             CCcEEEEeeccCCHHHHHHHHHHHHhccC
Confidence            99988788899999999999999887764

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.30  E-value=0.0029  Score=59.42  Aligned_cols=92  Identities=14%  Similarity=0.135  Sum_probs=77.9

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh--hH-------HHHHHhcCCCCCCeEEEEeCC
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS--EG-------WKVCSFYNMDSIPAVLVIDPI  205 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~--EG-------~~~~~~Y~~~~~P~i~IIdpr  205 (312)
                      ++|=||+++...|.-|+.+      .+-|+.|-+++ |-...+++|-.  .|       ...++.+++..+|.+.+|+|.
T Consensus       150 ~~~gL~fFy~~~C~~C~~~------apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~  223 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKM------APVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK  223 (256)
T ss_pred             hceeEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence            4799999999999999999      57788888775 77888887753  11       335677888999999999999


Q ss_pred             CCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          206 TGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       206 TGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      |++..-+-.|.++.+++++++...+..|
T Consensus       224 t~~~~pv~~G~iS~deL~~Ri~~v~~~f  251 (256)
T TIGR02739       224 SQKMSPLAYGFISQDELKERILNVLTQF  251 (256)
T ss_pred             CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence            9988777889999999999999998877

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.29  E-value=0.0014  Score=50.83  Aligned_cols=69  Identities=14%  Similarity=0.155  Sum_probs=44.0

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCC-----------------------hhHHHHHHh
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDT-----------------------SEGWKVCSF  190 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds-----------------------~EG~~~~~~  190 (312)
                      +|.++|++.++||.+|...-..+   .++.+-++  .+|.|..++.|.                       .....+.+.
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l---~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKL---KELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK   77 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHH---HHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence            68999999999999998865433   12223333  344444444332                       223467788


Q ss_pred             cCCCCCCeEEEEeCCCCe
Q 021440          191 YNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe  208 (312)
                      |.+..+|+++|||+ .|+
T Consensus        78 ~~i~~iP~~~lld~-~G~   94 (95)
T PF13905_consen   78 YGINGIPTLVLLDP-DGK   94 (95)
T ss_dssp             TT-TSSSEEEEEET-TSB
T ss_pred             CCCCcCCEEEEECC-CCC
Confidence            88999999999997 575

...

>PTZ00062 glutaredoxin; Provisional

Probab=97.26  E-value=0.0028  Score=57.62  Aligned_cols=86  Identities=15%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      ++-.+..+.....++++++++||.+|+.|+      +.+.++..+  ++.|+.++.+          |.+...|+++++.
T Consensus         7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~   70 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ   70 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE
Confidence            333333343447799999999999999994      455555554  6899999877          9999999999997


Q ss_pred             CCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          204 PITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       204 prTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                        .|+.+.++.|. +|.++...|....
T Consensus        71 --~g~~i~r~~G~-~~~~~~~~~~~~~   94 (204)
T PTZ00062         71 --NSQLINSLEGC-NTSTLVSFIRGWA   94 (204)
T ss_pred             --CCEEEeeeeCC-CHHHHHHHHHHHc
Confidence              59999998885 4555555554443

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.21  E-value=0.0038  Score=56.15  Aligned_cols=93  Identities=10%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEecc--------CC-hhHHHHHHhcCC------
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYD--------DT-SEGWKVCSFYNM------  193 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~--------ds-~EG~~~~~~Y~~------  193 (312)
                      .-++|.+||++..+||.+|..-.      +.+.++.+    .+|.++.++.        ++ .+..+++..|.+      
T Consensus        36 ~~kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~  109 (199)
T PTZ00056         36 SLKNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFE  109 (199)
T ss_pred             HhCCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeee
Confidence            33689999999999999998521      22222222    3466666653        22 234455544432      


Q ss_pred             ------------------------------CCCC---eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          194 ------------------------------DSIP---AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       194 ------------------------------~~~P---~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                                                    ..+|   +..|||+ .|+.+..+.|..+++++...|...|.+
T Consensus       110 d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~  180 (199)
T PTZ00056        110 PIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV  180 (199)
T ss_pred             eeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                                          1122   4678895 699998899988888888888777755

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0021  Score=59.98  Aligned_cols=95  Identities=15%  Similarity=0.189  Sum_probs=77.2

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCC
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG  207 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTG  207 (312)
                      +.++.-.|.++|++...||.+|++.      .|-+.++-+.  .+||+.+|+|.  -+.-+..|.+...|++++.-  +|
T Consensus        15 ~ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd~--c~~taa~~gV~amPTFiff~--ng   84 (288)
T KOG0908|consen   15 ELSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVDE--CRGTAATNGVNAMPTFIFFR--NG   84 (288)
T ss_pred             hhhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHHH--hhchhhhcCcccCceEEEEe--cC
Confidence            4467778999999999999999998      5777777776  49999997764  44567889999999998886  58


Q ss_pred             eeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021440          208 QKICSWCGMINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       208 e~v~~~~G~~~~~~fl~~L~~fl~~~~~  235 (312)
                      .++.++.|. ++..+-+.+.++++.-.-
T Consensus        85 ~kid~~qGA-d~~gLe~kv~~~~stsaa  111 (288)
T KOG0908|consen   85 VKIDQIQGA-DASGLEEKVAKYASTSAA  111 (288)
T ss_pred             eEeeeecCC-CHHHHHHHHHHHhccCcc
Confidence            999999985 777788888888766543

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.13  E-value=0.0035  Score=51.76  Aligned_cols=90  Identities=14%  Similarity=0.162  Sum_probs=55.6

Q ss_pred             HcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------HHHHHHhcCC
Q 021440          134 AQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------GWKVCSFYNM  193 (312)
Q Consensus       134 ~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------G~~~~~~Y~~  193 (312)
                      -.+|++||++. ..||..|...-+.+  ++...++-..++.++.+..++.+                   ...+...|.+
T Consensus        21 ~~gk~~ll~f~~~~~cp~C~~~~~~l--~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv   98 (140)
T cd03017          21 LRGKPVVLYFYPKDDTPGCTKEACDF--RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGV   98 (140)
T ss_pred             hCCCcEEEEEeCCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCC
Confidence            35899999998 57888897643332  11222222334444544444332                   1245556666


Q ss_pred             CCC---------CeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          194 DSI---------PAVLVIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       194 ~~~---------P~i~IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      ..+         |++.|||+ +|+.+.+|.|......+-+.|
T Consensus        99 ~~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017          99 WGEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             ccccccccCCcceeEEEECC-CCEEEEEEecCCccchHHHHh
Confidence            655         89999997 699999999987555554443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PHA02125 thioredoxin-like protein

Probab=97.11  E-value=0.0024  Score=48.19  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=50.6

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC-C
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI-N  218 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~-~  218 (312)
                      +|+++.+||.+|+.+.+-+      .+ +  .|.+..++  ..+...++..|++..+|++.     .|+.+..+.|.. +
T Consensus         2 iv~f~a~wC~~Ck~~~~~l------~~-~--~~~~~~vd--~~~~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~~   65 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPML------AN-V--EYTYVDVD--TDEGVELTAKHHIRSLPTLV-----NTSTLDRFTGVPRN   65 (75)
T ss_pred             EEEEECCCCHhHHHHHHHH------HH-H--hheEEeee--CCCCHHHHHHcCCceeCeEE-----CCEEEEEEeCCCCc
Confidence            7899999999999997642      11 1  25555554  44567899999999999986     377777788862 3


Q ss_pred             hHHHHHHH
Q 021440          219 PQPLGEML  226 (312)
Q Consensus       219 ~~~fl~~L  226 (312)
                      ..++.+.|
T Consensus        66 ~~~l~~~~   73 (75)
T PHA02125         66 VAELKEKL   73 (75)
T ss_pred             HHHHHHHh
Confidence            35555444

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.11  E-value=0.00082  Score=57.29  Aligned_cols=26  Identities=15%  Similarity=0.424  Sum_probs=21.3

Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHH
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGE  224 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~  224 (312)
                      +..|||+ .|+.+++|.|.++++++..
T Consensus       125 ttflId~-~G~i~~~~~G~~~~~~l~~  150 (152)
T cd00340         125 TKFLVDR-DGEVVKRFAPTTDPEELEK  150 (152)
T ss_pred             EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence            6899996 6999999999988876543

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.10  E-value=0.0045  Score=56.58  Aligned_cols=86  Identities=13%  Similarity=0.061  Sum_probs=70.9

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCCh---------hHHHHHHhcCCCCCCeEEEEeC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTS---------EGWKVCSFYNMDSIPAVLVIDP  204 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~---------EG~~~~~~Y~~~~~P~i~IIdp  204 (312)
                      .++|=||++..++|.-|+.+      .+-|+.|.+++ |-...++.|..         .....+..+++..+|.+.+|+|
T Consensus       119 a~~~gL~~F~~~~C~~C~~~------~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~  192 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQ------APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP  192 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHH------HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence            46999999999999999999      47778888764 77888877731         1234667889999999999999


Q ss_pred             CCCeeEEEecCCCChHHHHHHH
Q 021440          205 ITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       205 rTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      .|++.+-+-.|.++.+++++++
T Consensus       193 ~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  193 NTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             CCCeEEEEeeecCCHHHHHHhh
Confidence            9888877789999999998875

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.07  E-value=0.0048  Score=54.80  Aligned_cols=88  Identities=17%  Similarity=0.163  Sum_probs=55.3

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCCh------------------hHHHHHHhcC
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTS------------------EGWKVCSFYN  192 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~------------------EG~~~~~~Y~  192 (312)
                      .++|.++|++.++||..|+..-.      .+.++.++   ++|+..  .++.                  ....+...|+
T Consensus        72 ~~gk~vvl~F~atwCp~C~~~lp------~l~~~~~~~~~~vv~Is--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~  143 (189)
T TIGR02661        72 APGRPTLLMFTAPSCPVCDKLFP------IIKSIARAEETDVVMIS--DGTPAEHRRFLKDHELGGERYVVSAEIGMAFQ  143 (189)
T ss_pred             cCCCEEEEEEECCCChhHHHHHH------HHHHHHHhcCCcEEEEe--CCCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence            36799999999999999987632      22222221   233332  1111                  1235667788


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +...|+..|||+ .|+.+.  .|.+...+-++.+.+.++.
T Consensus       144 v~~~P~~~lID~-~G~I~~--~g~~~~~~~le~ll~~l~~  180 (189)
T TIGR02661       144 VGKIPYGVLLDQ-DGKIRA--KGLTNTREHLESLLEADRE  180 (189)
T ss_pred             CCccceEEEECC-CCeEEE--ccCCCCHHHHHHHHHHHHc
Confidence            899999999997 587764  4655554556665555544

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.06  E-value=0.0046  Score=46.29  Aligned_cols=75  Identities=15%  Similarity=0.090  Sum_probs=53.8

Q ss_pred             EEeecCCCcccchhhcccCCCHHHHHHh---hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC
Q 021440          141 VNLQSTKEFSSLMLNRDTWGNEAVSQII---SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI  217 (312)
Q Consensus       141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i---~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~  217 (312)
                      +-++.+||..|+.+..      .+.++.   +.++-+..++.+  +....++.|++..+|++.+ +   |+  ..+.|..
T Consensus         4 ~~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~-~---g~--~~~~G~~   69 (82)
T TIGR00411         4 ELFTSPTCPYCPAAKR------VVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI-N---GD--VEFIGAP   69 (82)
T ss_pred             EEEECCCCcchHHHHH------HHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE-C---CE--EEEecCC
Confidence            3456789999999954      333333   344667777765  3456778899999999975 4   54  2688988


Q ss_pred             ChHHHHHHHHHH
Q 021440          218 NPQPLGEMLLPF  229 (312)
Q Consensus       218 ~~~~fl~~L~~f  229 (312)
                      +++++.+.|...
T Consensus        70 ~~~~l~~~l~~~   81 (82)
T TIGR00411        70 TKEELVEAIKKR   81 (82)
T ss_pred             CHHHHHHHHHhh
Confidence            999888877764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PLN02412 probable glutathione peroxidase

Probab=97.03  E-value=0.0031  Score=54.99  Aligned_cols=95  Identities=11%  Similarity=0.097  Sum_probs=58.0

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--------h-hHHHH-HHhcC------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--------S-EGWKV-CSFYN------------  192 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--------~-EG~~~-~~~Y~------------  192 (312)
                      .+|.+||++..+||.+|..--..+  ++--.+|=..+|.++.++.++        . +-.++ +..|+            
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~  105 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN  105 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence            579999999999999998521111  112222223346666665431        1 11111 12211            


Q ss_pred             ----------------------CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          193 ----------------------MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       193 ----------------------~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                                            +...|+..|||+ .|+.++.|.|.++++++...|...|++
T Consensus       106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~~  166 (167)
T PLN02412        106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLGQ  166 (167)
T ss_pred             CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                                  222478888886 588888888888888887777777653

>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1)

Probab=96.99  E-value=0.0005  Score=48.99  Aligned_cols=41  Identities=17%  Similarity=0.396  Sum_probs=36.0

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +++|.+|+.. ||-+.+-|+++|+.++||++.|+..|.....
T Consensus         1 q~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~   41 (51)
T PF03943_consen    1 QEMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKA   41 (51)
T ss_dssp             HHHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCC
T ss_pred             CHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4689999999 9999999999999999999999999998654

Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=96.96  E-value=0.0031  Score=62.07  Aligned_cols=98  Identities=12%  Similarity=0.174  Sum_probs=70.9

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      ...+|++..   ...+|-+||+++.+||..|+.|...+   ..+.+.++.   ++.|..++.+..+..   . |.+..+|
T Consensus       352 ~~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n~~~---~-~~i~~~P  421 (462)
T TIGR01130       352 VGKNFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATANDVP---P-FEVEGFP  421 (462)
T ss_pred             eCcCHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCCccC---C-CCccccC
Confidence            345676654   45689999999999999999997644   456666665   788999988765533   3 8899999


Q ss_pred             eEEEEeCCCCee--EEEecCCCChHHHHHHHHHHHhhCC
Q 021440          198 AVLVIDPITGQK--ICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       198 ~i~IIdprTGe~--v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ++.+...  |.+  ...+.|..+.+.++    +||+++.
T Consensus       422 t~~~~~~--~~~~~~~~~~g~~~~~~l~----~~l~~~~  454 (462)
T TIGR01130       422 TIKFVPA--GKKSEPVPYDGDRTLEDFS----KFIAKHA  454 (462)
T ss_pred             EEEEEeC--CCCcCceEecCcCCHHHHH----HHHHhcC
Confidence            9999974  433  24577877766644    5555544

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=96.95  E-value=0.0045  Score=49.34  Aligned_cols=72  Identities=13%  Similarity=0.063  Sum_probs=43.9

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHHHHH-----------------HhcCCCCC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWKVC-----------------SFYNMDSI  196 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~~~~-----------------~~Y~~~~~  196 (312)
                      ++|+++|++.++||..|+.....+   ..+.+.....+.++.+..++ .+..+++                 ..|.+...
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   96 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL   96 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence            589999999999999999885432   12222223345444443222 2333343                 45555667


Q ss_pred             CeEEEEeCCCCeeE
Q 021440          197 PAVLVIDPITGQKI  210 (312)
Q Consensus       197 P~i~IIdprTGe~v  210 (312)
                      |+..|||+ .|+.+
T Consensus        97 P~~~vid~-~G~v~  109 (114)
T cd02967          97 PYAVLLDE-AGVIA  109 (114)
T ss_pred             CeEEEECC-CCeEE
Confidence            88888886 47654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=96.91  E-value=0.0047  Score=51.34  Aligned_cols=92  Identities=15%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeec--CCCc---ccchhhcccCCCHHHHHHhhccEEEEEeccCC---hhHHHHHHhcCC
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQS--TKEF---SSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT---SEGWKVCSFYNM  193 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~--~~~f---~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds---~EG~~~~~~Y~~  193 (312)
                      ..+|++++    ++++.+||-++.  +||.   .|..|-...      ..- ....++-+++.+.   .+...+++.|.+
T Consensus         8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~------~~a-a~~v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESS------ASA-TDDLLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHH------Hhh-cCceEEEEEecccccchhhHHHHHHhCC
Confidence            34566644    678999999999  7776   566663211      111 1248899998875   556889999999


Q ss_pred             C--CCCeEEEEeCCCCe--eEEEecCC-CChHHHHHHH
Q 021440          194 D--SIPAVLVIDPITGQ--KICSWCGM-INPQPLGEML  226 (312)
Q Consensus       194 ~--~~P~i~IIdprTGe--~v~~~~G~-~~~~~fl~~L  226 (312)
                      .  .||+|.+...  |+  ....+.|. .+.+.++.-|
T Consensus        77 ~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v  112 (116)
T cd03007          77 DKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFL  112 (116)
T ss_pred             CcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHH
Confidence            8  9999999984  53  33568886 8888766544

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=96.84  E-value=0.0048  Score=50.67  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=52.5

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEecc------CChh-------------------H
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYD------DTSE-------------------G  184 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~------ds~E-------------------G  184 (312)
                      ..+.-++|+++|++.++||..|+..-..+  ++-..++-..++.++.++.      ++.+                   .
T Consensus        17 ~l~~~~gk~vvl~F~a~~C~~C~~~~p~l--~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~   94 (126)
T cd03012          17 SLAQLRGKVVLLDFWTYCCINCLHTLPYL--TDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDND   94 (126)
T ss_pred             CHHHhCCCEEEEEEECCCCccHHHHHHHH--HHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCc
Confidence            33444789999999999999998763322  1111111123455555543      1111                   1


Q ss_pred             HHHHHhcCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440          185 WKVCSFYNMDSIPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       185 ~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~  216 (312)
                      ..+...|.+..+|+..|||+ .|+.+..+.|.
T Consensus        95 ~~~~~~~~v~~~P~~~vid~-~G~v~~~~~G~  125 (126)
T cd03012          95 YATWRAYGNQYWPALYLIDP-TGNVRHVHFGE  125 (126)
T ss_pred             hHHHHHhCCCcCCeEEEECC-CCcEEEEEecC
Confidence            23445677788999999997 59988887763

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0082  Score=57.33  Aligned_cols=100  Identities=18%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      -+|++.+.++. ..+++||+|..+||.+|..|--++   +.+..=.+..|++-.+|.|..  ..++..+++.+.|++..+
T Consensus        31 anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPtV~af  104 (304)
T COG3118          31 ANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPTVYAF  104 (304)
T ss_pred             hHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHH---HHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCeEEEe
Confidence            35677666543 346999999999999999996443   334444456799999987764  457888999999988777


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      -  .|+-|-.+.|...-+.+.+.|.+++
T Consensus       105 ~--dGqpVdgF~G~qPesqlr~~ld~~~  130 (304)
T COG3118         105 K--DGQPVDGFQGAQPESQLRQFLDKVL  130 (304)
T ss_pred             e--CCcCccccCCCCcHHHHHHHHHHhc
Confidence            5  4888888888765555444444444

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=96.62  E-value=0.0099  Score=51.70  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=59.1

Q ss_pred             HHHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------
Q 021440          132 ALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------  184 (312)
Q Consensus       132 Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------  184 (312)
                      +.-++||++|++. ..||..|..-.+.+  +....+|-+.++.++.++.|..+.                          
T Consensus        25 ~~~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~  102 (173)
T cd03015          25 SDYKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPK  102 (173)
T ss_pred             HHhCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCc
Confidence            3345799999999 78999999864443  233344444567777776665421                          


Q ss_pred             HHHHHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHH
Q 021440          185 WKVCSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLP  228 (312)
Q Consensus       185 ~~~~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~  228 (312)
                      ..+++.|.+.      ..|+++|||+ .|..+.++.+..    +.++++..|..
T Consensus       103 ~~~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~  155 (173)
T cd03015         103 KKISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA  155 (173)
T ss_pred             hhHHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            1233455543      4689999997 588888875543    34555555543

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.59  E-value=0.024  Score=48.01  Aligned_cols=94  Identities=11%  Similarity=0.138  Sum_probs=52.6

Q ss_pred             HcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------HHHHHhcCC
Q 021440          134 AQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------WKVCSFYNM  193 (312)
Q Consensus       134 ~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------~~~~~~Y~~  193 (312)
                      -++|.+||++... +|..|....+.+  +....++-++++.++.++.|+.+.                   ..+++.|.+
T Consensus        28 ~~gk~~ll~f~~~~~~p~C~~~~~~l--~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  105 (154)
T PRK09437         28 FQGQRVLVYFYPKAMTPGCTVQACGL--RDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV  105 (154)
T ss_pred             hCCCCEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence            3567888888865 567786543221  222222333345555555544321                   224445554


Q ss_pred             CC------------CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          194 DS------------IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       194 ~~------------~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ..            .|+..|||+ .|..++.|.|+... +.++.+..++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~-~~~~~~~~~~~  153 (154)
T PRK09437        106 WGEKKFMGKTYDGIHRISFLIDA-DGKIEHVFDKFKTS-NHHDVVLDYLK  153 (154)
T ss_pred             CcccccccccccCcceEEEEECC-CCEEEEEEcCCCcc-hhHHHHHHHHh
Confidence            22            277889997 59999999987544 34555655553

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.00011  Score=70.84  Aligned_cols=106  Identities=18%  Similarity=0.148  Sum_probs=80.1

Q ss_pred             HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC-----C-hhHHHHHHhcCCC--CCCeEEEE
Q 021440          131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD-----T-SEGWKVCSFYNMD--SIPAVLVI  202 (312)
Q Consensus       131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d-----s-~EG~~~~~~Y~~~--~~P~i~II  202 (312)
                      .++-..+|+.|.++.+-++.|++|++..|..+.++.++.+++.+|+++..     + -++++...+|...  ..++..|+
T Consensus         6 ~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~~~~s~~~~a~sp~~~~re~l~~~~~~~d~~~~s~~   85 (356)
T KOG1364|consen    6 QRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFTQVYSSSSAAPSPIEPQREVLFDPLGIMDQSTSSIL   85 (356)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccccccCCcccCCCcccccceeeeccccccccCccccc
Confidence            45667899999999999999999999999999999999999999999884     3 3566777777776  89999999


Q ss_pred             eCCCCeeEEEec--CCCChHHHHHHHHHHHhhCCCC
Q 021440          203 DPITGQKICSWC--GMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       203 dprTGe~v~~~~--G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      +|++|..-..|.  +......|+.--...+.+++++
T Consensus        86 ~p~~~~~~~s~~~~~~srL~slfrpp~~i~~~gsld  121 (356)
T KOG1364|consen   86 DPSENQDDESEHASSQSRLASLFRPPTDILSHGSLD  121 (356)
T ss_pred             CcccccchhhhhccccchhhhhcCCCcchhhcCChh
Confidence            999987655443  2222333333333344555555

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=96.48  E-value=0.032  Score=47.46  Aligned_cols=98  Identities=10%  Similarity=0.088  Sum_probs=59.9

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhc------------c--cC-------------CCHHHHHHhhc----cEEEEE-e
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNR------------D--TW-------------GNEAVSQIISV----NFIFWQ-E  177 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnR------------D--vw-------------~~~~V~~~i~~----nFIfwq-~  177 (312)
                      ..+.-++|++||++..+||..|..--.            +  ++             +.+.+++|+++    +|-++. .
T Consensus        16 ~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~   95 (153)
T TIGR02540        16 SLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKI   95 (153)
T ss_pred             cHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceE
Confidence            344557899999999999999965211            0  00             11456777753    232221 0


Q ss_pred             cc---CChhHHHHHHhcCCCCCCe----EEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          178 YD---DTSEGWKVCSFYNMDSIPA----VLVIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       178 ~~---ds~EG~~~~~~Y~~~~~P~----i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      ++   +...+..+.. .+...+|.    ..|||+ .|+.+..|.|.++++++...|.+.
T Consensus        96 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540        96 KILGSEAEPAFRFLV-DSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             ecCCCCCCcHHHHHH-hcCCCCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence            00   1111222221 12245787    999996 799999999999999888777654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR03137 AhpC peroxiredoxin

Probab=96.48  E-value=0.013  Score=52.00  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             HcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-----------------------HHHHH
Q 021440          134 AQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-----------------------WKVCS  189 (312)
Q Consensus       134 ~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-----------------------~~~~~  189 (312)
                      -.+||++|+++ ..||+.|..--..+  ++...+|-+.++.++.++.|+++.                       ..++.
T Consensus        29 ~~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~  106 (187)
T TIGR03137        29 VKGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR  106 (187)
T ss_pred             HCCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence            36899999999 89999998754433  233344545677777777776432                       13445


Q ss_pred             hcCCC------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHH--HHHHhhC
Q 021440          190 FYNMD------SIPAVLVIDPITGQKICSWCGM----INPQPLGEML--LPFMDRS  233 (312)
Q Consensus       190 ~Y~~~------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L--~~fl~~~  233 (312)
                      .|.+.      ..|+..|||+ .|.....|.+.    ...+++++.|  .+|.+++
T Consensus       107 ~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~  161 (187)
T TIGR03137       107 NFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIKAAQYVAAH  161 (187)
T ss_pred             HhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhc
Confidence            56553      3589999997 58887776432    2566666655  3344444

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=96.48  E-value=0.015  Score=44.10  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             EEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC
Q 021440          141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI  217 (312)
Q Consensus       141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~  217 (312)
                      |.|+++||..|+.+.      +.+.+++.+   .+.|..++  ..+   -+..|++...|+|+|    .|+.+  +.|..
T Consensus         3 i~~~a~~C~~C~~~~------~~~~~~~~e~~~~~~~~~v~--~~~---~a~~~~v~~vPti~i----~G~~~--~~G~~   65 (76)
T TIGR00412         3 IQIYGTGCANCQMTE------KNVKKAVEELGIDAEFEKVT--DMN---EILEAGVTATPGVAV----DGELV--IMGKI   65 (76)
T ss_pred             EEEECCCCcCHHHHH------HHHHHHHHHcCCCeEEEEeC--CHH---HHHHcCCCcCCEEEE----CCEEE--EEecc
Confidence            778899999999994      456666654   36676665  222   256799999999998    47766  77854


Q ss_pred             -ChHHHHHHH
Q 021440          218 -NPQPLGEML  226 (312)
Q Consensus       218 -~~~~fl~~L  226 (312)
                       +.+++.+.|
T Consensus        66 ~~~~~l~~~l   75 (76)
T TIGR00412        66 PSKEEIKEIL   75 (76)
T ss_pred             CCHHHHHHHh
Confidence             445554443

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=96.46  E-value=0.0062  Score=40.12  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL   44 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~l   44 (312)
                      .+++|.+.+++  |-+.+.|++.|.+++||++.|++.
T Consensus         2 ~~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~   36 (37)
T PF00627_consen    2 DEEKVQQLMEM--GFSREQAREALRACNGNVERAVDW   36 (37)
T ss_dssp             HHHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence            35789999999  899999999999999999999974

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=96.44  E-value=0.0099  Score=49.64  Aligned_cols=81  Identities=12%  Similarity=0.048  Sum_probs=52.0

Q ss_pred             HcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHh-hccEEEEEeccCCh-------------------hHHHHHHhcC
Q 021440          134 AQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTS-------------------EGWKVCSFYN  192 (312)
Q Consensus       134 ~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~-------------------EG~~~~~~Y~  192 (312)
                      -.+|+++|++..+ ||.+|+.--..+   ..+.+.. ..++.+..+..+..                   ....+...|.
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l---~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~  102 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELPYL---NELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALG  102 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHHHH---HHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTT
T ss_pred             hCCCeEEEEEEccCCCCcchhhhhhH---HhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhC
Confidence            5789999999999 999998654210   1112222 22243333333321                   2335666777


Q ss_pred             CC---------CCCeEEEEeCCCCeeEEEecCCCC
Q 021440          193 MD---------SIPAVLVIDPITGQKICSWCGMIN  218 (312)
Q Consensus       193 ~~---------~~P~i~IIdprTGe~v~~~~G~~~  218 (312)
                      +.         .+|+++|||+ .|+.+....|..+
T Consensus       103 ~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~  136 (146)
T PF08534_consen  103 VTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP  136 (146)
T ss_dssp             CEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred             CccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence            66         8999999996 6999888887654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]

Probab=96.42  E-value=0.005  Score=62.88  Aligned_cols=80  Identities=15%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHHH-HH----HhcCCCCCCeE
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWK-VC----SFYNMDSIPAV  199 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~~-~~----~~Y~~~~~P~i  199 (312)
                      .+|.++|+.++|.|++.+--+.|..|++|.+.-|-|++..+++++|||-..+|-+. |+--+ |.    ..+.-+.+|--
T Consensus       102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPms  181 (786)
T KOG2244|consen  102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMS  181 (786)
T ss_pred             HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCcee
Confidence            78999999999999999999999999999999999999999999999998886443 33322 22    23444779999


Q ss_pred             EEEeCC
Q 021440          200 LVIDPI  205 (312)
Q Consensus       200 ~IIdpr  205 (312)
                      +.|.|.
T Consensus       182 V~LTPd  187 (786)
T KOG2244|consen  182 VFLTPD  187 (786)
T ss_pred             EEeCCC
Confidence            999874

>cd00194 UBA Ubiquitin Associated domain

Probab=96.40  E-value=0.0084  Score=39.35  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.6

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF   46 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff   46 (312)
                      ++.|.+++++  |-+.+.|+.-|+.++||++.|++..|
T Consensus         2 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           2 EEKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            4688999998  88899999999999999999998766

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=96.36  E-value=0.022  Score=49.75  Aligned_cols=83  Identities=17%  Similarity=0.124  Sum_probs=61.9

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChh-------------------
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSE-------------------  183 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~E-------------------  183 (312)
                      ........=++|.|.+|+...||.+|+.|   ||.=..|-+-|+++   |-..-++.|..+                   
T Consensus        23 ~~~~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf   99 (157)
T KOG2501|consen   23 TEVLASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPF   99 (157)
T ss_pred             ccchHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence            44445555678999999999999999999   66777777777788   654445555322                   


Q ss_pred             ----HHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          184 ----GWKVCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       184 ----G~~~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                          -+++..+|.+...|.+.||.| .|..+..
T Consensus       100 ~d~~~~~l~~ky~v~~iP~l~i~~~-dG~~v~~  131 (157)
T KOG2501|consen  100 GDDLIQKLSEKYEVKGIPALVILKP-DGTVVTE  131 (157)
T ss_pred             CCHHHHHHHHhcccCcCceeEEecC-CCCEehH
Confidence                224667999999999999998 6876644

>smart00165 UBA Ubiquitin associated domain

Probab=96.31  E-value=0.0088  Score=39.05  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=32.1

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF   46 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff   46 (312)
                      .+.|.+++++  |-+.+.|++-|+.++||++.|++-.|
T Consensus         2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            4678999999  89999999999999999999987643

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=96.23  E-value=0.052  Score=48.55  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             CCcccc--ccccHHHHHHHHHHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------
Q 021440          115 PPFHVM--FNGSFEKAKDAALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------  184 (312)
Q Consensus       115 PP~~l~--~~gsf~~A~~~Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------  184 (312)
                      |+|...  +.|++.+... +.-.+||++|+++ ..||+.|..--..+  ++...+|-+.++.++.++.|+++.       
T Consensus         9 p~f~~~~~~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~   85 (187)
T PRK10382          9 KPFKNQAFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSS   85 (187)
T ss_pred             CCcEEEEEeCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHh
Confidence            566552  2355533322 2336789999999 88999998743332  344455556677788887776543       


Q ss_pred             ----------------HHHHHhcCC----CCC--CeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440          185 ----------------WKVCSFYNM----DSI--PAVLVIDPITGQKICSWCGM----INPQPLGEMLLP  228 (312)
Q Consensus       185 ----------------~~~~~~Y~~----~~~--P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~  228 (312)
                                      ..++..|.+    ..+  |...|||| .|.....|...    .+.+++++.|..
T Consensus        86 ~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~a  154 (187)
T PRK10382         86 SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKA  154 (187)
T ss_pred             hccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence                            245567776    234  99999997 58877665321    367777776643

>PRK15000 peroxidase; Provisional

Probab=96.15  E-value=0.03  Score=50.46  Aligned_cols=91  Identities=10%  Similarity=0.007  Sum_probs=62.9

Q ss_pred             cCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||++|+++.. +|+.|..--..+  +....+|-+.++.++.++.|+.+..                          .+
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i  110 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI  110 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence            689999999995 899998754332  3445556566788888888865421                          33


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLP  228 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~  228 (312)
                      ++.|.+.      .+|...|||| .|.....+.|..    +.+++++.|..
T Consensus       111 a~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        111 QKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            4456654      5899999998 588877765532    56777766644

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.15  E-value=0.044  Score=49.53  Aligned_cols=87  Identities=9%  Similarity=0.059  Sum_probs=59.8

Q ss_pred             HHHHHHcCCeEEEE-eecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCC
Q 021440          129 KDAALAQDKWLLVN-LQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI  205 (312)
Q Consensus       129 ~~~Ak~~~KwLLVn-iq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdpr  205 (312)
                      ++.-+..++.+.|. +.++||..|..+.      +.+.++..+  +..+..++.+  +...++..|++.++|++.|.+  
T Consensus       125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~--  194 (215)
T TIGR02187       125 VELLQSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEAN--ENPDLAEKYGVMSVPKIVINK--  194 (215)
T ss_pred             HHHHHhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCC--CCHHHHHHhCCccCCEEEEec--
Confidence            33334456666555 7899999999885      344445443  3556655544  456788899999999999865  


Q ss_pred             CCeeEEEecCCCChHHHHHHHHH
Q 021440          206 TGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       206 TGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      .|+.   +.|....++|.+.|..
T Consensus       195 ~~~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       195 GVEE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             CCEE---EECCCCHHHHHHHHHh
Confidence            3543   7788888887776653

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=95.93  E-value=0.056  Score=45.95  Aligned_cols=59  Identities=12%  Similarity=0.075  Sum_probs=51.0

Q ss_pred             cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          171 NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       171 nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      .+.|..++.|.  ...++..|++.++|+++++.  .|+.+..+.|..+.+++++.|.+++++-
T Consensus        69 ~v~~akVDiD~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         69 TWQVAIADLEQ--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             ceEEEEEECCC--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            36788776664  47799999999999999998  4999999999999999999999998764

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=95.79  E-value=0.057  Score=46.90  Aligned_cols=74  Identities=16%  Similarity=0.057  Sum_probs=44.3

Q ss_pred             HcCCeEEEEeecCC-CcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh---------------------HHHHHH
Q 021440          134 AQDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE---------------------GWKVCS  189 (312)
Q Consensus       134 ~~~KwLLVniq~~~-~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E---------------------G~~~~~  189 (312)
                      -++||++|+++..| |+.|..--+.      +.++.+  .++.++.++.|+++                     +..++.
T Consensus        42 ~~Gk~vvl~f~~s~~cp~C~~e~~~------l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~  115 (167)
T PRK00522         42 FAGKRKVLNIFPSIDTGVCATSVRK------FNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGK  115 (167)
T ss_pred             hCCCEEEEEEEcCCCCCccHHHHHH------HHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence            36899999999998 8999874221      222222  24566666655432                     224444


Q ss_pred             hcCCCCCC---------eEEEEeCCCCeeEEEec
Q 021440          190 FYNMDSIP---------AVLVIDPITGQKICSWC  214 (312)
Q Consensus       190 ~Y~~~~~P---------~i~IIdprTGe~v~~~~  214 (312)
                      .|.+...|         +..|||+ .|..+..|.
T Consensus       116 ~~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~  148 (167)
T PRK00522        116 AYGVAIAEGPLKGLLARAVFVLDE-NNKVVYSEL  148 (167)
T ss_pred             HhCCeecccccCCceeeEEEEECC-CCeEEEEEE
Confidence            55554344         6777775 577666653

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=95.78  E-value=0.055  Score=48.37  Aligned_cols=90  Identities=14%  Similarity=0.163  Sum_probs=58.5

Q ss_pred             HcCCeEEEEeec-CCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------HH
Q 021440          134 AQDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WK  186 (312)
Q Consensus       134 ~~~KwLLVniq~-~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------~~  186 (312)
                      -.+||++|+++. .+|+.|..--..+  +....+|-+.++-++.++.|+.+.                          ..
T Consensus        34 ~~Gk~~lL~F~p~~~~~~C~~e~~~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~  111 (199)
T PTZ00253         34 YKGKWVVLFFYPLDFTFVCPTEIIQF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS  111 (199)
T ss_pred             HCCCEEEEEEEcCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence            358999999995 6788888644322  344555555677777777775431                          24


Q ss_pred             HHHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHH
Q 021440          187 VCSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEML  226 (312)
Q Consensus       187 ~~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L  226 (312)
                      +++.|.+-      .||...|||| .|.....+.+..    +.++++..|
T Consensus       112 ia~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l  160 (199)
T PTZ00253        112 IARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLL  160 (199)
T ss_pred             HHHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHH
Confidence            55677762      4799999998 588777665533    344444444

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=95.72  E-value=0.033  Score=44.70  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             cCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------HHHHHHhcCCC
Q 021440          135 QDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------GWKVCSFYNMD  194 (312)
Q Consensus       135 ~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------G~~~~~~Y~~~  194 (312)
                      .+||+||++... ||..|+.....+  +....+|=..++-++.+..+..+                   +..++..|.+.
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l--~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  101 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPEL--NELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE  101 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHH--HHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred             CCCcEEEEEeCccCccccccchhHH--HHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence            679999999998 999998775442  12222222346777777777654                   22344556555


Q ss_pred             ------CCCeEEEEeCCCCeeEE
Q 021440          195 ------SIPAVLVIDPITGQKIC  211 (312)
Q Consensus       195 ------~~P~i~IIdprTGe~v~  211 (312)
                            .+|++.|||+ .|..++
T Consensus       102 ~~~~~~~~p~~~lid~-~g~I~~  123 (124)
T PF00578_consen  102 DEKDTLALPAVFLIDP-DGKIRY  123 (124)
T ss_dssp             ETTTSEESEEEEEEET-TSBEEE
T ss_pred             cccCCceEeEEEEECC-CCEEEe
Confidence                  7899999997 476553

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.077  Score=52.14  Aligned_cols=97  Identities=22%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK  209 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~  209 (312)
                      ......++..+|.+.++||..|+.|-....   .+...++.  +..-..+|-.+-..+++.|++..||++.+..|  |..
T Consensus        41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~--~~~  113 (383)
T KOG0191|consen   41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP--GKK  113 (383)
T ss_pred             HHhhccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcC--CCc
Confidence            346677888999999999999999965443   55566666  55556778899999999999999999999997  444


Q ss_pred             EEEecCCCChHHHHHHHHHHHhhC
Q 021440          210 ICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       210 v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      .....|..+.+.+.+.+...++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~  137 (383)
T KOG0191|consen  114 PIDYSGPRNAESLAEFLIKELEPS  137 (383)
T ss_pred             eeeccCcccHHHHHHHHHHhhccc
Confidence            555777777777776666666553

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=95.36  E-value=0.12  Score=48.83  Aligned_cols=92  Identities=11%  Similarity=-0.029  Sum_probs=60.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------------HHHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------------G~~~  187 (312)
                      .+||++++++ ..||+.|..--..+  ++...+|-+.++.++.++.|+++                          ...+
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i  174 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV  174 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence            5789999999 78999998733222  23334444455666666666542                          1345


Q ss_pred             HHhcCCC-----CCCeEEEEeCCCCeeEEEecC----CCChHHHHHHHHHH
Q 021440          188 CSFYNMD-----SIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPF  229 (312)
Q Consensus       188 ~~~Y~~~-----~~P~i~IIdprTGe~v~~~~G----~~~~~~fl~~L~~f  229 (312)
                      ++.|.+.     ..|.+.|||| .|.....+..    ..+.+++++.|..+
T Consensus       175 akayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        175 SKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            6677763     5899999998 5887776521    13677777766543

>PRK13190 putative peroxiredoxin; Provisional

Probab=95.21  E-value=0.17  Score=45.47  Aligned_cols=96  Identities=11%  Similarity=0.038  Sum_probs=59.3

Q ss_pred             HHHcCCeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------H
Q 021440          132 ALAQDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------W  185 (312)
Q Consensus       132 Ak~~~KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~  185 (312)
                      +.-++||++| ++-..||+.|..--..+  .+...+|-+.++.++.++.|+.+.                         .
T Consensus        23 ~d~~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~  100 (202)
T PRK13190         23 SKYKGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDK  100 (202)
T ss_pred             HHhCCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCCh
Confidence            3336899877 56788999997543221  222233434566666666665321                         2


Q ss_pred             HHHHhcCCC------CCCeEEEEeCCCCeeEEEe----cCCCChHHHHHHHHHHH
Q 021440          186 KVCSFYNMD------SIPAVLVIDPITGQKICSW----CGMINPQPLGEMLLPFM  230 (312)
Q Consensus       186 ~~~~~Y~~~------~~P~i~IIdprTGe~v~~~----~G~~~~~~fl~~L~~fl  230 (312)
                      .++..|.+.      .+|++.|||| .|.....+    .+..+.++++..|....
T Consensus       101 ~ia~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        101 ELAREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             HHHHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            455666652      4899999998 58765554    23357888887776654

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=0.068  Score=54.57  Aligned_cols=95  Identities=14%  Similarity=0.190  Sum_probs=68.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ..+|++.+    ..+.++||-++.+||.-|+.|--+.   ..-.+.+++   .--+-++  |-++...+|+.|.+..||+
T Consensus        32 ~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey---~kAA~~Lke~~s~i~LakV--Dat~~~~~~~~y~v~gyPT  102 (493)
T KOG0190|consen   32 KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEY---EKAATELKEEGSPVKLAKV--DATEESDLASKYEVRGYPT  102 (493)
T ss_pred             cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHH---HHHHHHhhccCCCceeEEe--ecchhhhhHhhhcCCCCCe
Confidence            45566554    4689999999999999999995332   222334444   3445555  5555599999999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                      +-|.-  +|.....++|.-+.+..+.-|+
T Consensus       103 lkiFr--nG~~~~~Y~G~r~adgIv~wl~  129 (493)
T KOG0190|consen  103 LKIFR--NGRSAQDYNGPREADGIVKWLK  129 (493)
T ss_pred             EEEEe--cCCcceeccCcccHHHHHHHHH
Confidence            99985  6887667889887777554443

>PTZ00256 glutathione peroxidase; Provisional

Probab=94.82  E-value=0.28  Score=43.25  Aligned_cols=38  Identities=18%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             CCCCCe---EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          193 MDSIPA---VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       193 ~~~~P~---i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +..+|+   ..|||+ .|..+..+.|.++++.+.+.|.+.|.
T Consensus       142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll~  182 (183)
T PTZ00256        142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLLN  182 (183)
T ss_pred             CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHhc
Confidence            446784   589996 59999999998888888777777653

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=94.82  E-value=0.33  Score=43.47  Aligned_cols=90  Identities=16%  Similarity=0.154  Sum_probs=58.9

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEE------EEeccCC------------------------
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIF------WQEYDDT------------------------  181 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIf------wq~~~ds------------------------  181 (312)
                      +.-.+|-.|||+...||.+|.+=      .|.+.++=.++|-+      ..++.|.                        
T Consensus        55 ~~l~GKV~lvn~~Aswc~~c~~e------~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~  128 (184)
T TIGR01626        55 AELAGKVRVVHHIAGRTSAKEXN------ASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ  128 (184)
T ss_pred             HHcCCCEEEEEEEecCCChhhcc------chHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence            44558999999999999999752      23333332234444      3333332                        


Q ss_pred             ----hhHHHHHHhcCCCCCCeE-EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          182 ----SEGWKVCSFYNMDSIPAV-LVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       182 ----~EG~~~~~~Y~~~~~P~i-~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                          .+| .+...|.+..+|.. .|||+ .|+.+.+..|.++.+++-+ +...+
T Consensus       129 vllD~~g-~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~-~~~li  179 (184)
T TIGR01626       129 VVLDDKG-AVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT-VISLV  179 (184)
T ss_pred             EEECCcc-hHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH-HHHHH
Confidence                122 24457788889877 89996 6999999999988876643 44433

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=94.72  E-value=0.18  Score=41.31  Aligned_cols=80  Identities=11%  Similarity=0.037  Sum_probs=48.9

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-HH-------------------HHHhcCC
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-WK-------------------VCSFYNM  193 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-~~-------------------~~~~Y~~  193 (312)
                      .+|+++|++. +.||..|...-+.+  +....+|=..++.|+.+..++++. .+                   +...|++
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~   98 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV   98 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence            6888888887 78999998764443  222223323456666666665432 23                   3334444


Q ss_pred             CCC---------CeEEEEeCCCCeeEEEecCCC
Q 021440          194 DSI---------PAVLVIDPITGQKICSWCGMI  217 (312)
Q Consensus       194 ~~~---------P~i~IIdprTGe~v~~~~G~~  217 (312)
                      ...         |++.|||+ +|+.+..|.|..
T Consensus        99 ~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~  130 (140)
T cd02971          99 LIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL  130 (140)
T ss_pred             ccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence            333         47888896 688888887754

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=94.70  E-value=0.055  Score=52.07  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             CCeEEEEeecCCCcccchhhcccC-CCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE-e
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTW-GNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS-W  213 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw-~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~-~  213 (312)
                      +..++|+++..||.-+++|.--.- +...+++-.-++=|.|+ .+|..---.++++|++..||++=|+-  .|+++++ +
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfr--nG~~~~rEY   89 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFR--NGEMMKREY   89 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeee--ccchhhhhh
Confidence            678999999999999999954321 11222332223456674 34544445688999999999999986  5999985 8


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 021440          214 CGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       214 ~G~~~~~~fl~~L~~fl~  231 (312)
                      .|..+++.|++-+.+-++
T Consensus        90 Rg~RsVeaL~efi~kq~s  107 (375)
T KOG0912|consen   90 RGQRSVEALIEFIEKQLS  107 (375)
T ss_pred             ccchhHHHHHHHHHHHhc
Confidence            898888888777665543

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=94.37  E-value=0.34  Score=37.97  Aligned_cols=83  Identities=8%  Similarity=-0.011  Sum_probs=52.8

Q ss_pred             HHHHHcCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          130 DAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       130 ~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      +.+++-++.+ +.-+.++||..|..+.+-+   +++.+. ..++-|..++.+  +-..++..|++.+.|+++| |   |+
T Consensus         5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~~-~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi-d---G~   74 (89)
T cd03026           5 EQIRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAVL-NPNIEHEMIDGA--LFQDEVEERGIMSVPAIFL-N---GE   74 (89)
T ss_pred             HHHHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHHH-CCCceEEEEEhH--hCHHHHHHcCCccCCEEEE-C---CE
Confidence            3444445553 4444568999999885433   333322 224666666555  4457888999999999964 4   77


Q ss_pred             eEEEecCCCChHHHHH
Q 021440          209 KICSWCGMINPQPLGE  224 (312)
Q Consensus       209 ~v~~~~G~~~~~~fl~  224 (312)
                      .+  +.|..+.+++++
T Consensus        75 ~~--~~G~~~~~e~~~   88 (89)
T cd03026          75 LF--GFGRMTLEEILA   88 (89)
T ss_pred             EE--EeCCCCHHHHhh
Confidence            65  458777777654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=94.02  E-value=0.11  Score=42.72  Aligned_cols=22  Identities=18%  Similarity=-0.070  Sum_probs=18.5

Q ss_pred             HcCCeEEEEeecCCCcc-cchhh
Q 021440          134 AQDKWLLVNLQSTKEFS-SLMLN  155 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~-c~~ln  155 (312)
                      -.+||++|++..+||.. |...-
T Consensus        20 ~~gk~~vl~f~~~~C~~~C~~~l   42 (142)
T cd02968          20 LKGKPVLVYFGYTHCPDVCPTTL   42 (142)
T ss_pred             hCCCEEEEEEEcCCCcccCHHHH
Confidence            36899999999999997 98543

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK13189 peroxiredoxin; Provisional

Probab=93.82  E-value=0.29  Score=44.79  Aligned_cols=92  Identities=13%  Similarity=0.073  Sum_probs=56.9

Q ss_pred             cCCeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------HHHH
Q 021440          135 QDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVC  188 (312)
Q Consensus       135 ~~KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~~~~  188 (312)
                      .+||++| ++-..||+.|..--..+  +....+|-+.|+.++.++.|+...                         ..++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia  111 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA  111 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence            6788876 55688999998643322  333445555566667776665431                         2345


Q ss_pred             HhcCCC-------CCCeEEEEeCCCCeeEEEecC----CCChHHHHHHHHHH
Q 021440          189 SFYNMD-------SIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPF  229 (312)
Q Consensus       189 ~~Y~~~-------~~P~i~IIdprTGe~v~~~~G----~~~~~~fl~~L~~f  229 (312)
                      +.|.+.       ..|.+.|||| .|.....+.+    ..+.++++..|..+
T Consensus       112 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        112 KKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             HHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            566652       4689999998 5877655432    23567777666543

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=93.56  E-value=0.11  Score=34.49  Aligned_cols=62  Identities=15%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHH-HHhcCCCCCCeEEEEeCC
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKV-CSFYNMDSIPAVLVIDPI  205 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~-~~~Y~~~~~P~i~IIdpr  205 (312)
                      |+.++..+|..|+.+...+-. -   .+.+.++.+..++.+....... ...+++..+|.+.++++.
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAE-L---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHH-H---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            466778899999998653311 1   4567788888888777665443 357888999999999963

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=93.56  E-value=0.39  Score=39.84  Aligned_cols=75  Identities=15%  Similarity=0.043  Sum_probs=48.2

Q ss_pred             cCCeEEEEeecCC-CcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhH---------------------HHHHHh
Q 021440          135 QDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEG---------------------WKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq~~~-~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG---------------------~~~~~~  190 (312)
                      .+|+++|++...| |..|..--..      +.++..  .++.++.++.|..+.                     ..++..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~------l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~   98 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKR------FNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA   98 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHH------HHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence            5899999999988 5888875333      333322  267888887775431                     234444


Q ss_pred             cCCC------CCCeEEEEeCCCCeeEEEecCC
Q 021440          191 YNMD------SIPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       191 Y~~~------~~P~i~IIdprTGe~v~~~~G~  216 (312)
                      |.+.      ..|...|||+ .|..+..+.|.
T Consensus        99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~~  129 (143)
T cd03014          99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELVP  129 (143)
T ss_pred             hCCeeccCCccceEEEEEcC-CCeEEEEEECC
Confidence            5442      1578888886 58877776653

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=93.48  E-value=0.38  Score=41.13  Aligned_cols=82  Identities=15%  Similarity=0.267  Sum_probs=48.9

Q ss_pred             CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCC--CCCeEEEEeCCCCeeEEEec
Q 021440          137 KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDPITGQKICSWC  214 (312)
Q Consensus       137 KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~--~~P~i~IIdprTGe~v~~~~  214 (312)
                      +.+++.+..........+...+   ..+..-.+.+++|.-++.+  ...+++..|.+.  .+|.++|+++.+++.-....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~  170 (184)
T PF13848_consen   96 PPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPE  170 (184)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--S
T ss_pred             ceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCC
Confidence            3355555443333343332221   3333333566777777666  445688889886  89999999998877433347


Q ss_pred             CCCChHHHH
Q 021440          215 GMINPQPLG  223 (312)
Q Consensus       215 G~~~~~~fl  223 (312)
                      |.++++.+.
T Consensus       171 ~~~~~~~i~  179 (184)
T PF13848_consen  171 GEITPESIE  179 (184)
T ss_dssp             SCGCHHHHH
T ss_pred             CCCCHHHHH
Confidence            777775533

...

>PRK13191 putative peroxiredoxin; Provisional

Probab=93.43  E-value=0.44  Score=43.41  Aligned_cols=91  Identities=11%  Similarity=0.056  Sum_probs=60.4

Q ss_pred             cCCeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-------------------------HHH
Q 021440          135 QDKWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-------------------------KVC  188 (312)
Q Consensus       135 ~~KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-------------------------~~~  188 (312)
                      .+||++| ++-..||+.|..--..+  ++...+|-+.++.++.++.|+....                         .++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia  109 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA  109 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence            6789887 66788999998854442  3444566667788888887765431                         344


Q ss_pred             HhcCCC-------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440          189 SFYNMD-------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP  228 (312)
Q Consensus       189 ~~Y~~~-------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~  228 (312)
                      ..|.+-       ..|.+.|||| .|.....+.+.    .+.+++|..|..
T Consensus       110 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a  159 (215)
T PRK13191        110 KRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA  159 (215)
T ss_pred             HHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            556641       3689999998 58776654322    267777776654

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=93.25  E-value=0.64  Score=38.57  Aligned_cols=82  Identities=13%  Similarity=0.012  Sum_probs=43.9

Q ss_pred             HHHcC-CeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH---------------------HHHH
Q 021440          132 ALAQD-KWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG---------------------WKVC  188 (312)
Q Consensus       132 Ak~~~-KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG---------------------~~~~  188 (312)
                      +.-.+ |+++|++. .+||..|..--..+  .....+|-+.++.++.++.++++.                     .+++
T Consensus        23 ~~~~g~k~~vl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  100 (149)
T cd03018          23 SEFRGRKPVVLVFFPLAFTPVCTKELCAL--RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA  100 (149)
T ss_pred             HHHcCCCeEEEEEeCCCCCccHHHHHHHH--HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH
Confidence            44345 88887776 78999997543222  111222222345555554444321                     2344


Q ss_pred             HhcCCC----C--CCeEEEEeCCCCeeEEEecCC
Q 021440          189 SFYNMD----S--IPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       189 ~~Y~~~----~--~P~i~IIdprTGe~v~~~~G~  216 (312)
                      ..|.+.    .  .|+..|||+ .|+.++.+.|.
T Consensus       101 ~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~  133 (149)
T cd03018         101 KAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD  133 (149)
T ss_pred             HHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence            445543    1  237788886 57777776654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=93.08  E-value=0.56  Score=42.07  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             CeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------HHHHHh
Q 021440          137 KWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVCSF  190 (312)
Q Consensus       137 KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~~~~~~  190 (312)
                      ||++| ++-..||+.|..--..+  .....+|-+.++.++.++.|+.+.                         ..++..
T Consensus        26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~  103 (203)
T cd03016          26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL  103 (203)
T ss_pred             CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence            78755 66688999998754332  223334445567777777776432                         244556


Q ss_pred             cCCC--------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHH
Q 021440          191 YNMD--------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLL  227 (312)
Q Consensus       191 Y~~~--------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~  227 (312)
                      |.+.        ..|.+.|||| .|.....+.+..    +.++++..|.
T Consensus       104 yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~  151 (203)
T cd03016         104 LGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD  151 (203)
T ss_pred             cCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            6652        2356899998 477766654432    4455555553

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13599 putative peroxiredoxin; Provisional

Probab=92.88  E-value=0.48  Score=43.25  Aligned_cols=91  Identities=15%  Similarity=0.054  Sum_probs=53.8

Q ss_pred             cCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-------------------------HHHH
Q 021440          135 QDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-------------------------WKVC  188 (312)
Q Consensus       135 ~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-------------------------~~~~  188 (312)
                      .+||+ |+++-..||+.|..--..+  ...-.+|-+.++.++.++.|+.+.                         ..++
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va  104 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS  104 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence            57896 6788889999998732221  122233444456666666665422                         2455


Q ss_pred             HhcCCC-------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440          189 SFYNMD-------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP  228 (312)
Q Consensus       189 ~~Y~~~-------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~  228 (312)
                      ..|.+.       ..|++.|||| .|+....+...    ...+++++.|..
T Consensus       105 ~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~~  154 (215)
T PRK13599        105 NQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALKA  154 (215)
T ss_pred             HHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            666652       5799999998 58776554211    245666655543

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=92.84  E-value=0.82  Score=37.63  Aligned_cols=48  Identities=6%  Similarity=-0.071  Sum_probs=30.5

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW  185 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~  185 (312)
                      ++.||+++-..||..|+.--+.+  ++-..++-..++.++.+..++.+..
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~~~v~vv~V~~~~~~~~   71 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDALGVELVAVGPESPEKL   71 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHhcCeEEEEEeCCCHHHH
Confidence            44555556689999999765443  2223333345788888888776544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=92.61  E-value=0.31  Score=32.84  Aligned_cols=40  Identities=18%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      ++.|.+..++--.-+.+.-+..|++++||+|.||+..++.
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~   41 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            4678888888788899999999999999999999988763

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=92.33  E-value=1.3  Score=39.50  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=49.0

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh----hccEEEEEeccC--------C-hhHHHHHH-hcCCCC
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII----SVNFIFWQEYDD--------T-SEGWKVCS-FYNMDS  195 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i----~~nFIfwq~~~d--------s-~EG~~~~~-~Y~~~~  195 (312)
                      ..+.=.+|.+||++.++||..|..+.       .+.++.    ...|.++.+..+        + .+-..+++ .|.+ .
T Consensus        19 ~Ls~~~GKvvLVvf~AS~C~~~~q~~-------~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~   90 (183)
T PRK10606         19 TLEKYAGNVLLIVNVASKCGLTPQYE-------QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-T   90 (183)
T ss_pred             eHHHhCCCEEEEEEEeCCCCCcHHHH-------HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-C
Confidence            34555689999999999999887653       344443    346888888653        2 34556776 5765 5


Q ss_pred             CCeEEEEeCCCCee
Q 021440          196 IPAVLVIDPITGQK  209 (312)
Q Consensus       196 ~P~i~IIdprTGe~  209 (312)
                      ||.+.=+|. +|+.
T Consensus        91 Fpv~~k~dv-nG~~  103 (183)
T PRK10606         91 FPMFSKIEV-NGEG  103 (183)
T ss_pred             ceeEEEEcc-CCCC
Confidence            998888885 5664

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=92.18  E-value=0.45  Score=32.13  Aligned_cols=40  Identities=8%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      .+.|.+..++=-..+.+..+..|+.++||+|.||+..++.
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            4566677777678899999999999999999999988763

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=91.92  E-value=0.71  Score=34.72  Aligned_cols=69  Identities=22%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             ecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecC-CCChHHH
Q 021440          144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCG-MINPQPL  222 (312)
Q Consensus       144 q~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G-~~~~~~f  222 (312)
                      .+++|..|..+-.      .+.+.+.++=+-+.+..- .+..++ ..|++.+.|++ +||   |+.+  |.| ..+.+++
T Consensus         6 ~~~~C~~C~~~~~------~~~~~~~~~~i~~ei~~~-~~~~~~-~~ygv~~vPal-vIn---g~~~--~~G~~p~~~el   71 (76)
T PF13192_consen    6 FSPGCPYCPELVQ------LLKEAAEELGIEVEIIDI-EDFEEI-EKYGVMSVPAL-VIN---GKVV--FVGRVPSKEEL   71 (76)
T ss_dssp             ECSSCTTHHHHHH------HHHHHHHHTTEEEEEEET-TTHHHH-HHTT-SSSSEE-EET---TEEE--EESS--HHHHH
T ss_pred             eCCCCCCcHHHHH------HHHHHHHhcCCeEEEEEc-cCHHHH-HHcCCCCCCEE-EEC---CEEE--EEecCCCHHHH
Confidence            4667999997743      344444433233344322 444444 99999999999 666   6644  788 5566666


Q ss_pred             HHHH
Q 021440          223 GEML  226 (312)
Q Consensus       223 l~~L  226 (312)
                      .+.|
T Consensus        72 ~~~l   75 (76)
T PF13192_consen   72 KELL   75 (76)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5554

...

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=91.51  E-value=0.8  Score=32.92  Aligned_cols=56  Identities=11%  Similarity=0.021  Sum_probs=37.2

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ++.++.+||..|+.+.+-+   +++.+ ...++-|..++.+..  ..++..|.+.+.|+|+|
T Consensus         3 v~~f~~~~C~~C~~~~~~l---~~l~~-~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAA---NRIAA-LNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHH---HHHHH-hCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence            3456788999999885422   12211 123577777776654  35788999999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG4351 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.22  E-value=0.046  Score=50.38  Aligned_cols=46  Identities=17%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             chhhHHHHHhhhccccCC-CH-HHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            5 SIDKESRISSFLEIAVGA-SG-VTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         5 s~~~~~~i~~F~~iTt~~-~~-~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +.++..+|.+|..++..+ .+ .-|+.||++.||||..|++.||+.+.
T Consensus        20 t~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t   67 (244)
T KOG4351|consen   20 TTDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT   67 (244)
T ss_pred             CCCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence            446889999999995433 34 78999999999999999999999764

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=90.10  E-value=0.11  Score=51.25  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=38.4

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      ..+.|.+|+++ ||.++..|+.||+.++||++.|...++...
T Consensus         4 p~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~   44 (380)
T KOG2086|consen    4 PLDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAF   44 (380)
T ss_pred             chhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhcccc
Confidence            56789999999 999999999999999999999999999864

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=89.54  E-value=1.6  Score=32.50  Aligned_cols=61  Identities=15%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcC--CCCCCeEEEEe
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYN--MDSIPAVLVID  203 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~--~~~~P~i~IId  203 (312)
                      ++.++|++.++||..|+.+      .+.+.++.++   ...|..++..+ ........|.  +..+|.+.+..
T Consensus        32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~   97 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFK   97 (127)
T ss_pred             CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEe
Confidence            8899999889999999999      5556666554   35666666542 5566677777  78889887554

>TIGR00264 alpha-NAC-related protein

Probab=89.48  E-value=0.53  Score=39.17  Aligned_cols=34  Identities=26%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHH
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAIL   43 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~   43 (312)
                      .+.|.-.++= +|++.+.|+.-|+.|||||-.||-
T Consensus        79 ~eDI~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~  112 (116)
T TIGR00264        79 EDDIELVMKQ-CNVSKEEARRALEECGGDLAEAIM  112 (116)
T ss_pred             HHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence            4566667777 899999999999999999999986

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=89.28  E-value=1.4  Score=41.07  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-----cEEEEEecc-CC-------------------
Q 021440          127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-----NFIFWQEYD-DT-------------------  181 (312)
Q Consensus       127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-----nFIfwq~~~-ds-------------------  181 (312)
                      .++.......|-.++.|.|+.|..|++|..+      +..+++.     .++.+.+-. ++                   
T Consensus       108 ~~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~------l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~  181 (251)
T PRK11657        108 HWILDGKADAPRIVYVFADPNCPYCKQFWQQ------ARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQE  181 (251)
T ss_pred             CCccccCCCCCeEEEEEECCCChhHHHHHHH------HHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHH
Confidence            3455566677888999999999999999654      3334332     233332211 10                   


Q ss_pred             -----------------h-------hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          182 -----------------S-------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       182 -----------------~-------EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                                       .       +..++.+.+.+...|+|++.|. +|+ +.+..|+.++++|.+.|.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~-~G~-~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        182 YEASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK-DGT-LQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             HHHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHhC
Confidence                             0       0112445566789999999996 464 455789999998877663

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=89.24  E-value=1  Score=37.60  Aligned_cols=78  Identities=15%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHcCCeEEEEeec-------CCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHH-----HHHH
Q 021440          125 FEKAKDAALAQDKWLLVNLQS-------TKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGW-----KVCS  189 (312)
Q Consensus       125 f~~A~~~Ak~~~KwLLVniq~-------~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~-----~~~~  189 (312)
                      |.++++.....++.|+|.+.+       +||.+|..-      .+-|.+.++   ++.+|..+.+.+....     .|-+
T Consensus         8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~a------ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~   81 (119)
T PF06110_consen    8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAA------EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT   81 (119)
T ss_dssp             HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHH------HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred             HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHH------HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence            555566656677899999886       478888765      466666655   3677777766554322     3444


Q ss_pred             --hcCCCCCCeEEEEeCCCCeeE
Q 021440          190 --FYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       190 --~Y~~~~~P~i~IIdprTGe~v  210 (312)
                        .+++...|+|+-..  +++++
T Consensus        82 ~p~~~l~~IPTLi~~~--~~~rL  102 (119)
T PF06110_consen   82 DPDLKLKGIPTLIRWE--TGERL  102 (119)
T ss_dssp             --CC---SSSEEEECT--SS-EE
T ss_pred             cceeeeeecceEEEEC--CCCcc
Confidence              68899999999887  34443

; PDB: 1V9W_A 1WOU_A.

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=88.67  E-value=0.65  Score=38.64  Aligned_cols=36  Identities=33%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL   44 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~l   44 (312)
                      .++.|.-.++= +|++.+.|+.-|+.|||||-.||-.
T Consensus        76 ~~edI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~  111 (115)
T PRK06369         76 PEEDIELVAEQ-TGVSEEEARKALEEANGDLAEAILK  111 (115)
T ss_pred             CHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence            35667777787 8999999999999999999999864

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=88.62  E-value=2.2  Score=35.78  Aligned_cols=94  Identities=11%  Similarity=0.114  Sum_probs=56.5

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCC--HHHHHHhhcc-EEEEEeccCChhHHHHHHhcCC--CCCCeEEEEeCCCCeeE
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGN--EAVSQIISVN-FIFWQEYDDTSEGWKVCSFYNM--DSIPAVLVIDPITGQKI  210 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~--~~V~~~i~~n-FIfwq~~~ds~EG~~~~~~Y~~--~~~P~i~IIdprTGe~v  210 (312)
                      +.|=+|-|-.. ..+|..=.|+-|.+  ..|.+-.+.. +.|.-++.+....  +..++.+  ..||.++|+++..| +-
T Consensus        20 ~~~C~i~~l~~-~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY   95 (130)
T cd02983          20 KQLCIIAFLPH-ILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KF   95 (130)
T ss_pred             CCeEEEEEcCc-cccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-cc
Confidence            45666666442 22333322222211  2444444556 6666565555444  8888888  35999999999655 43


Q ss_pred             EEecCCCChHHHHHHHHHHHhhC
Q 021440          211 CSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       211 ~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      ....|.++.+.+.+-|..|++..
T Consensus        96 ~~~~~~~t~e~i~~Fv~~~l~Gk  118 (130)
T cd02983          96 ATLKGSFSEDGINEFLRELSYGR  118 (130)
T ss_pred             ccccCccCHHHHHHHHHHHHcCC
Confidence            33678888888777777777654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=87.92  E-value=2.6  Score=39.84  Aligned_cols=102  Identities=16%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      .|-++...+ ...-|++|.|+.+.+..|..||.-+  ..-..+|..-.||=..+..-   +  ++..|+....|+|+|.-
T Consensus       135 ~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~vKFvkI~a~~~---~--~~~~f~~~~LPtllvYk  206 (265)
T PF02114_consen  135 EFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPEVKFVKIRASKC---P--ASENFPDKNLPTLLVYK  206 (265)
T ss_dssp             HHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TTSEEEEEEECGC---C--TTTTS-TTC-SEEEEEE
T ss_pred             hHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCceEEEEEehhcc---C--cccCCcccCCCEEEEEE
Confidence            355555432 2356999999999999999998765  34455666666765544221   1  56678889999999997


Q ss_pred             CCCCeeEEEecCCC---ChHHHHHHHHHHHhhCCC
Q 021440          204 PITGQKICSWCGMI---NPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       204 prTGe~v~~~~G~~---~~~~fl~~L~~fl~~~~~  235 (312)
                        .|..+..+.|..   .-+-+...|..||.++..
T Consensus       207 --~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~  239 (265)
T PF02114_consen  207 --NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV  239 (265)
T ss_dssp             --TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred             --CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence              599998877642   345567889999988764

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=87.57  E-value=1.6  Score=40.28  Aligned_cols=88  Identities=11%  Similarity=0.200  Sum_probs=57.0

Q ss_pred             HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc----EEEEEeccCCh----------------------
Q 021440          129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN----FIFWQEYDDTS----------------------  182 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n----FIfwq~~~ds~----------------------  182 (312)
                      ........|-.++.|.|+.|..|++|.++      +.++.+.+    |+.|...-..+                      
T Consensus       100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~------l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~  173 (232)
T PRK10877        100 IVYKAPQEKHVITVFTDITCGYCHKLHEQ------MKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDA  173 (232)
T ss_pred             EEecCCCCCEEEEEEECCCChHHHHHHHH------HHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHH
Confidence            33345567889999999999999999644      56665432    33343310111                      


Q ss_pred             ----------------hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          183 ----------------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       183 ----------------EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                                      +-.++++.+++...|+|++-|   |+.+   .|+.++++|.+.|.+
T Consensus       174 ~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~~---G~~~---~G~~~~~~L~~~l~~  229 (232)
T PRK10877        174 MKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLSN---GTLV---PGYQGPKEMKAFLDE  229 (232)
T ss_pred             HcCCCCCcccccchHHHhHHHHHHcCCccccEEEEcC---CeEe---eCCCCHHHHHHHHHH
Confidence                            122345666778899998655   6654   899999987766653

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=87.32  E-value=1.2  Score=37.50  Aligned_cols=79  Identities=16%  Similarity=0.159  Sum_probs=42.8

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCChhHHHHHHhc---CCCCCCeEEEEeCC
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDTSEGWKVCSFY---NMDSIPAVLVIDPI  205 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds~EG~~~~~~Y---~~~~~P~i~IIdpr  205 (312)
                      ..+...+++-++-|..+||++|...      -|.+.++...+ -|=+.+- ...+...+...|   ...+.|+++|+|. 
T Consensus        35 ~l~~~~~~~~ilvi~e~WCgD~~~~------vP~l~kiae~~p~i~~~~i-~rd~~~el~~~~lt~g~~~IP~~I~~d~-  106 (129)
T PF14595_consen   35 KLKSIQKPYNILVITETWCGDCARN------VPVLAKIAEANPNIEVRII-LRDENKELMDQYLTNGGRSIPTFIFLDK-  106 (129)
T ss_dssp             HHHT--S-EEEEEE--TT-HHHHHH------HHHHHHHHHH-TTEEEEEE--HHHHHHHTTTTTT-SS--SSEEEEE-T-
T ss_pred             HHHhcCCCcEEEEEECCCchhHHHH------HHHHHHHHHhCCCCeEEEE-EecCChhHHHHHHhCCCeecCEEEEEcC-
Confidence            3344556677778889999999987      37777777765 3322221 223344444433   3478999999996 


Q ss_pred             CCeeEEEecCC
Q 021440          206 TGQKICSWCGM  216 (312)
Q Consensus       206 TGe~v~~~~G~  216 (312)
                      .|+.+.+|...
T Consensus       107 ~~~~lg~wger  117 (129)
T PF14595_consen  107 DGKELGRWGER  117 (129)
T ss_dssp             T--EEEEEESS
T ss_pred             CCCEeEEEcCC
Confidence            48999999753

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=86.42  E-value=4.5  Score=28.57  Aligned_cols=66  Identities=9%  Similarity=0.128  Sum_probs=41.7

Q ss_pred             EEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCC--hhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC
Q 021440          141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDT--SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI  217 (312)
Q Consensus       141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds--~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~  217 (312)
                      .-++.+||..|+.+.+          ++++ +.-+..++++.  .....+...++...+|++.+ +   |+.   +.|+ 
T Consensus         3 ~lf~~~~C~~C~~~~~----------~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g~-   64 (74)
T TIGR02196         3 KVYTTPWCPPCKKAKE----------YLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVGF-   64 (74)
T ss_pred             EEEcCCCChhHHHHHH----------HHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---EeeC-
Confidence            4456689999998742          2332 34455556554  33556788899999999876 3   543   5664 


Q ss_pred             ChHHHHH
Q 021440          218 NPQPLGE  224 (312)
Q Consensus       218 ~~~~fl~  224 (312)
                      +++.+.+
T Consensus        65 ~~~~i~~   71 (74)
T TIGR02196        65 DPEKLDQ   71 (74)
T ss_pred             CHHHHHH
Confidence            6655443

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.31  E-value=1.6  Score=42.96  Aligned_cols=98  Identities=14%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh--hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCC
Q 021440          129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT  206 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i--~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprT  206 (312)
                      ....+..++-.||-++.+||..|+.|-. .|  ..+...+  ..+.-++.++.+  -...+++.+.+..||++.+.-+  
T Consensus       155 ~~~~~~~~~~~lv~f~aPwc~~ck~l~~-~~--~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~--  227 (383)
T KOG0191|consen  155 DETVKDSDADWLVEFYAPWCGHCKKLAP-EW--EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPP--  227 (383)
T ss_pred             hhhhhccCcceEEEEeccccHHhhhcCh-HH--HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecC--
Confidence            3446667787888889999999999932 22  2222233  356666666655  6678889999999999977765  


Q ss_pred             Cee-EEEecCCCChHHHHHHHHHHHhhC
Q 021440          207 GQK-ICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       207 Ge~-v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      |.. .....|..+.+.++.-+.......
T Consensus       228 ~~~~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  228 GEEDIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             CCcccccccccccHHHHHHHHHhhcCCC
Confidence            444 445667778888777777776664

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=84.30  E-value=11  Score=33.11  Aligned_cols=98  Identities=12%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             HHHHHHcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-------------------HHH
Q 021440          129 KDAALAQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-------------------KVC  188 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-------------------~~~  188 (312)
                      +..+.-.+||+++|++-- +.+-|..=-++.  ++...+|=+-+.+.++++.|+++..                   +++
T Consensus        23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~F--rd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~  100 (157)
T COG1225          23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDF--RDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA  100 (157)
T ss_pred             EehHHhcCCcEEEEECCCCCCCcchHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH
Confidence            445666788999999953 344443322111  2344455566899999999976533                   456


Q ss_pred             HhcCC------------CCCCeEEEEeCCCCeeEEEecCC---CChHHHHHHHHHH
Q 021440          189 SFYNM------------DSIPAVLVIDPITGQKICSWCGM---INPQPLGEMLLPF  229 (312)
Q Consensus       189 ~~Y~~------------~~~P~i~IIdprTGe~v~~~~G~---~~~~~fl~~L~~f  229 (312)
                      ..|.+            ..-+...|||+ .|.....|...   -.+++.++.|.+.
T Consensus       101 ~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~l  155 (157)
T COG1225         101 EAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKKL  155 (157)
T ss_pred             HHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHHh
Confidence            66665            14578899997 69999999543   2456777766653

>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]

Probab=83.38  E-value=0.91  Score=25.50  Aligned_cols=15  Identities=33%  Similarity=0.293  Sum_probs=13.3

Q ss_pred             hHHHHHHHHHHhhHh
Q 021440          255 NIKDCCSALAASMET  269 (312)
Q Consensus       255 ~~eql~~Ai~~Sl~~  269 (312)
                      ++++|++||+.||++
T Consensus         3 Ed~~L~~Al~~S~~e   17 (18)
T PF02809_consen    3 EDEDLQRALEMSLEE   17 (18)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhcc
Confidence            568999999999986

In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.

>smart00726 UIM Ubiquitin-interacting motif

Probab=83.09  E-value=1.1  Score=27.48  Aligned_cols=19  Identities=21%  Similarity=0.237  Sum_probs=16.3

Q ss_pred             hHHHHHHHHHHhhHhhcCC
Q 021440          255 NIKDCCSALAASMETIKDT  273 (312)
Q Consensus       255 ~~eql~~Ai~~Sl~~~~~~  273 (312)
                      ++++|++||+.||.+.+..
T Consensus         2 EDe~Lq~Ai~lSl~e~e~~   20 (26)
T smart00726        2 EDEDLQLALELSLQEAEES   20 (26)
T ss_pred             hHHHHHHHHHHhHHHhhhc
Confidence            4689999999999987754

Present in proteasome subunit S5a and other ubiquitin-associated proteins.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=82.70  E-value=2.5  Score=43.42  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=69.5

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      +..-+|++   .+-.++|=+||-++.+||.-|+.|.--   =+++.+.++  ++-|+-.+|+...|-..    ..++.||
T Consensus       371 vVgknfd~---iv~de~KdVLvEfyAPWCgHCk~laP~---~eeLAe~~~~~~~vviAKmDaTaNd~~~----~~~~~fP  440 (493)
T KOG0190|consen  371 VVGKNFDD---IVLDEGKDVLVEFYAPWCGHCKALAPI---YEELAEKYKDDENVVIAKMDATANDVPS----LKVDGFP  440 (493)
T ss_pred             EeecCHHH---HhhccccceEEEEcCcccchhhhhhhH---HHHHHHHhcCCCCcEEEEeccccccCcc----ccccccc
Confidence            34445654   577899999999999999999999421   245555554  36788888877666332    2346699


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      +|.+.-.-..+....++|..+    ++.|..|++.+...
T Consensus       441 TI~~~pag~k~~pv~y~g~R~----le~~~~fi~~~a~~  475 (493)
T KOG0190|consen  441 TILFFPAGHKSNPVIYNGDRT----LEDLKKFIKKSATE  475 (493)
T ss_pred             eEEEecCCCCCCCcccCCCcc----hHHHHhhhccCCCc
Confidence            999886422234555666554    55577788877664

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=81.55  E-value=3.8  Score=39.78  Aligned_cols=98  Identities=11%  Similarity=0.146  Sum_probs=63.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEe-ccCChhHHHHHHhcCCCCCCeE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQE-YDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~-~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      +-.++++-...-|.++-| ||.++.+||.-|++|. -||.  +|.--++.-=.-..+ -.|-+.=..+++.+.+..||+|
T Consensus        29 ~VeDLddkFkdnkdddiW-~VdFYAPWC~HCKkLe-PiWd--eVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI  104 (468)
T KOG4277|consen   29 AVEDLDDKFKDNKDDDIW-FVDFYAPWCAHCKKLE-PIWD--EVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI  104 (468)
T ss_pred             hhhhhhHHhhhcccCCeE-EEEeechhhhhccccc-chhH--HhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence            445666666667777777 6899999999999995 3552  343333322111111 2233344467788899999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEM  225 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~  225 (312)
                      .++-   |-....+.|....+.+++-
T Consensus       105 k~~k---gd~a~dYRG~R~Kd~iieF  127 (468)
T KOG4277|consen  105 KFFK---GDHAIDYRGGREKDAIIEF  127 (468)
T ss_pred             EEec---CCeeeecCCCccHHHHHHH
Confidence            9986   4455567777777766554

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=81.04  E-value=10  Score=27.37  Aligned_cols=70  Identities=9%  Similarity=-0.109  Sum_probs=37.9

Q ss_pred             EEeecCCCcccchhhcccCCCHHHHHHhhccEE-EEEeccCCh-hHHHHHHh--cCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440          141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFI-FWQEYDDTS-EGWKVCSF--YNMDSIPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFI-fwq~~~ds~-EG~~~~~~--Y~~~~~P~i~IIdprTGe~v~~~~G~  216 (312)
                      +-+..+||..|+.+.          .++.++-+ |..++.+.. +.......  +.....|+| +++  .|+.+.    .
T Consensus         3 ~ly~~~~C~~C~~~~----------~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~----~   65 (77)
T TIGR02200         3 TVYGTTWCGYCAQLM----------RTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT----N   65 (77)
T ss_pred             EEEECCCChhHHHHH----------HHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EEC--CCeEec----C
Confidence            345567999999873          45555422 334455433 22223222  367889997 455  365432    2


Q ss_pred             CChHHHHHHHH
Q 021440          217 INPQPLGEMLL  227 (312)
Q Consensus       217 ~~~~~fl~~L~  227 (312)
                      .+..++.+.|+
T Consensus        66 ~~~~~~~~~l~   76 (77)
T TIGR02200        66 PSAAQVKAKLQ   76 (77)
T ss_pred             CCHHHHHHHhh
Confidence            35556665554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=80.10  E-value=2.8  Score=35.14  Aligned_cols=35  Identities=34%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL   44 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~l   44 (312)
                      .+.|.-.|+= +|.+.+.|+.-|+.+|+||-.||-.
T Consensus        85 eeDIkLV~eQ-a~VsreeA~kAL~e~~GDlaeAIm~  119 (122)
T COG1308          85 EEDIKLVMEQ-AGVSREEAIKALEEAGGDLAEAIMK  119 (122)
T ss_pred             HHHHHHHHHH-hCCCHHHHHHHHHHcCCcHHHHHHH
Confidence            3456666677 8999999999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
2dlx_A	153	Solution Structure Of The Uas Domain Of Human Ubx D		8e-28

>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain- Containing Protein 7 Length = 153

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 72/115 (62%)
Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64
Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW 213
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	4e-47
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	4e-08
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	1e-04
2kuc_A	130	Putative disulphide-isomerase; structural genomics	6e-04

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score =  155 bits (392), Expect = 4e-47
 Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 1/134 (0%)

Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64

Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W  + +
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQL-D 123

Query: 219 PQPLGEMLLPFMDR 232
                + +  F+  
Sbjct: 124 VSSFLDQVTGFLGE 137

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 178

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 27/141 (19%), Positives = 38/141 (26%), Gaps = 25/141 (17%)

Query: 114 RPPFHVMFNGSFEKAKDAALA----QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS 169
            P F   F GS E A   A        K L + L   +   + +        E++   +S
Sbjct: 32  HPVF---FIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS 88

Query: 170 VNFIFW-------------QEYDDTSEGWKVCSFYNM---DSIPAVLVIDPITGQKICSW 213
            NFI W                 +   G  V         D  P  L+I           
Sbjct: 89  QNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLN 148

Query: 214 C--GMINPQPLGEMLLPFMDR 232
              G      L   L+  M+ 
Sbjct: 149 VIQGNTTVDELMMRLMAAMEI 169

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 124 SFEKAKDAALAQDKWLLVNLQST-----KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEY 178
            + +A   A A  + ++V   S      ++      N     +  VS+++   F+     
Sbjct: 7   PYPEALALAQAHGRMVMVYFHSEHCPYCQQM-----NTFVLSDPGVSRLLEARFVVASVS 61

Query: 179 DDTSEGWKVCSFYNMDSIPAVLVIDP--ITGQKICSWCGMINPQPLGEML 226
            DT EG ++   Y +   P  + + P     +++    G        + L
Sbjct: 62  VDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKEL 111

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 121 FNGSFEKAKDAALAQDKWLLVNLQST-----KEFSSLMLNRDTWGNEAVSQIISVNFIFW 175
              SF +A   A  +DK L V+  +T     K      L++  + +  V+   + +F+  
Sbjct: 12  RELSFPEALKRAEVEDKLLFVDCFTTWCGPCK-----RLSKVVFKDSLVADYFNRHFVNL 66

Query: 176 QEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEML 226
           +   +  EG ++   Y + + P +L I+  +G+ +    G  +   L + +
Sbjct: 67  KMDMEKGEGVELRKKYGVHAYPTLLFINS-SGEVVYRLVGAEDAPELLKKV 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	100.0
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	99.96
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.58
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.51
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.23
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.47
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.46
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.41
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	99.32
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.32
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	99.32
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.3
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	99.27
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	99.24
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	99.18
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.03
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.02
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.97
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.96
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.96
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.95
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.95
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.95
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.94
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.92
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.91
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.9
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.9
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.89
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.89
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.89
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.88
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.87
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.86
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.86
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.84
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.84
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.84
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.84
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.84
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.83
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.82
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.82
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.82
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.81
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.81
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.81
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.81
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.81
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.8
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.79
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.79
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.78
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.78
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.78
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.76
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.76
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.75
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.75
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.74
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.73
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.73
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.73
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.72
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.71
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.7
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.7
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.69
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.68
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.67
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.67
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.67
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.66
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.66
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.65
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.65
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.64
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.63
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.62
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.61
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.61
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.6
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.6
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.59
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.59
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.59
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.59
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.58
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.57
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.57
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.57
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.57
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.56
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.55
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.55
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.55
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.55
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.95
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.54
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.53
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.52
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.5
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.5
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.48
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.48
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.47
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.47
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.46
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.44
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.43
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.43
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.42
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.41
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.41
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.4
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.38
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.37
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.37
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.36
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.36
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.35
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.34
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	98.33
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.32
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.32
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.29
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.29
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.28
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.26
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.25
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.24
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.21
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.2
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.18
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.18
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.17
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.16
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.16
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.14
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.12
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.12
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.12
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.12
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.11
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.11
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.09
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.08
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.06
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.05
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.05
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.01
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.99
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.99
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.98
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.98
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.97
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	97.96
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	97.96
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.96
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.95
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	97.95
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.93
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.92
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.87
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.86
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.85
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.84
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.81
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.8
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	97.79
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.78
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.75
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.75
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.75
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.75
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.73
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.72
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	97.71
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	97.7
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.7
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.69
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.69
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	96.86
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.67
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.64
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	97.59
1oai_A	59	Nuclear RNA export factor; nuclear transport, nucl	97.57
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.54
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	97.52
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.5
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.5
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	96.64
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.44
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.44
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.42
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	97.42
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	97.36
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.3
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.28
2jp7_A	57	MRNA export factor MEX67; solution MEX67, UBA, tra	97.27
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.26
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.24
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	97.24
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	97.16
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.16
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	97.15
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.12
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.09
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.06
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	97.0
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.0
3me7_A	170	Putative uncharacterized protein; electron transfe	96.99
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	96.99
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	96.97
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	96.97
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	96.93
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	96.93
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	96.9
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.82
4gew_A	362	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	96.8
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	96.78
1ttz_A	87	Conserved hypothetical protein; structural genomic	96.75
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.72
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	96.71
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.7
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	96.69
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.69
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	96.67
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	96.61
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	96.6
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	96.55
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	96.52
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	96.42
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	96.32
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.26
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	96.26
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	96.23
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	96.21
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	96.18
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.16
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	96.09
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	96.07
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	96.01
2l2d_A	73	OTU domain-containing protein 7A; UBA fold, struct	95.98
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.94
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	95.93
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	95.87
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	95.75
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	95.73
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.68
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	95.58
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	95.5
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	95.49
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	95.41
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	95.4
2dna_A	67	Unnamed protein product; ubiquitin associated doma	95.36
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	95.17
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.16
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	95.1
1jkg_B	250	TAP; NTF2-like domain, transport protein; 1.90A {H	95.03
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	94.94
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	94.9
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	94.79
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	94.69
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	94.66
1vdl_A	80	Ubiquitin carboxyl-terminal hydrolase 25; UBA doma	94.56
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	94.56
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	94.52
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	94.32
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	94.24
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	94.23
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	94.2
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	94.11
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	94.1
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	93.86
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	93.74
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	93.55
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	93.39
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	93.15
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	92.83
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	92.72
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	92.02
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	91.27
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	91.09
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	91.04
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	90.76
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	90.74
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	90.44
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	90.29
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	90.04
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	89.35
2lva_A	129	Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi	88.91
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	89.3
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	89.06
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	88.21
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	87.89
1kte_A	105	Thioltransferase; redox-active center, electron tr	87.51
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	87.35
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	87.08
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	87.0
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	86.29
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	86.17
2dhy_A	67	CUE domain-containing protein 1; structural genomi	85.77
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	85.61
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	84.19
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	83.28
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	81.88
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	81.8
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	81.24
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	81.09
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	80.87
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	80.46
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	80.36
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	80.2

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=100.00  E-value=1.7e-33  Score=241.96  Aligned_cols=134  Identities=40%  Similarity=0.788  Sum_probs=128.0

Q ss_pred             CCcchhHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC
Q 021440          101 TTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD  180 (312)
Q Consensus       101 ~~~~~~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d  180 (312)
                      +.+++.++|+.+|+||+.|+|.++|++|++.||+++|||||+|+++||+.|++|+|+||+|++|+++|++|||+|+++++
T Consensus         7 ~~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~   86 (153)
T 2dlx_A            7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHD   86 (153)
T ss_dssp             CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESS
T ss_pred             CCCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecC
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021440          181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       181 s~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~  235 (312)
                      +++|..|++.|++..+|+++||||.||+.+.+|.| +++++|++.|.+|++++.-
T Consensus        87 ~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~  140 (153)
T 2dlx_A           87 SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQ  140 (153)
T ss_dssp             SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCS
T ss_pred             CHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998998988977 8999999999999988753

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=222.74  Aligned_cols=133  Identities=21%  Similarity=0.187  Sum_probs=123.2

Q ss_pred             CcchhHHHhhhcCCCccccccccHHHHHHHH----HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEe
Q 021440          102 TDTSHDILASLYRPPFHVMFNGSFEKAKDAA----LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQE  177 (312)
Q Consensus       102 ~~~~~~~La~lfrPP~~l~~~gsf~~A~~~A----k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~  177 (312)
                      +..+.+.|++.|+++++.||.|+|++|++.|    |+++||||||||+++|++|+.|||+||+|++|++||++|||+|++
T Consensus        17 ~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~   96 (178)
T 2ec4_A           17 LLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAW   96 (178)
T ss_dssp             HHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEE
Confidence            5678999999999999999999999999999    999999999999999999999999999999999999999999999


Q ss_pred             ccCChh-------------HHHHHHh---cCCCCCCeEEEEeCCCC--eeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          178 YDDTSE-------------GWKVCSF---YNMDSIPAVLVIDPITG--QKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       178 ~~ds~E-------------G~~~~~~---Y~~~~~P~i~IIdprTG--e~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      |++++|             |.+++..   |++..||+++||+++.+  +.+.+++|.+++++|++.|.++++++.
T Consensus        97 dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~  171 (178)
T 2ec4_A           97 DLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT  171 (178)
T ss_dssp             ECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred             eCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            999999             5566655   89999999999998633  457789999999999999999999875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.58  E-value=6.5e-15  Score=125.16  Aligned_cols=113  Identities=12%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------  185 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------  185 (312)
                      ....+|++++..|+.++|++||+++.+||.+|+.|.+.+|.++.+.++++++|+|+.++.+.....              
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~  110 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT  110 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhh
Confidence            346789999999999999999999999999999999999999999999999999999998764311              


Q ss_pred             ----------HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCC-hHHHHHHHHHHHhhC
Q 021440          186 ----------KVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN-PQPLGEMLLPFMDRS  233 (312)
Q Consensus       186 ----------~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~-~~~fl~~L~~fl~~~  233 (312)
                                -.+..|++..+|+++|||+ .|+.+..+.|+.+ +++|++.|.+.++++
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~~~G~~~~~~~l~~~l~~~l~~~  168 (172)
T 3f9u_A          111 LRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNKSYAYDEDISKYINFLQTGLENY  168 (172)
T ss_dssp             EEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence                      1167899999999999997 6999988899998 999999999988764

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.5e-13  Score=110.76  Aligned_cols=111  Identities=19%  Similarity=0.221  Sum_probs=102.0

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ...+|++++..|+.++|++||++.++||..|+.+...++.++.+.++++.+|+++.++.+..+...++..|++..+|+++
T Consensus        12 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~   91 (130)
T 2kuc_A           12 RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLL   91 (130)
T ss_dssp             BCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEE
T ss_pred             ccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEE
Confidence            46789999999999999999999999999999999999999999999999999999998887788899999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      |+|+ .|+.+..+.|..++++|.+.|.+.+..
T Consensus        92 ~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           92 FINS-SGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             EECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             EECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            9996 699998999999999988888887654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.23  E-value=2.6e-15  Score=121.40  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=104.7

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      +..+ ++++..|+.++|++||+++++||..|+.+.+.++.++.+.+.++.+|+|+.++.+..++..++..|++..+|+++
T Consensus         5 w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~   83 (130)
T 2lst_A            5 WYPY-PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFV   83 (130)
Confidence            4444 899999999999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             EEeCCCCee--EEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440          201 VIDPITGQK--ICSWCGMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       201 IIdprTGe~--v~~~~G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      |+||..|+.  +..+.|..++++|.+.|.+.+.+....
T Consensus        84 ~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~~  121 (130)
T 2lst_A           84 FLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGGAC  121 (130)
Confidence            999988988  888999999999999998888776544

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.47  E-value=4.2e-13  Score=112.91  Aligned_cols=107  Identities=10%  Similarity=0.143  Sum_probs=98.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh---------hHHHHHHhcC
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS---------EGWKVCSFYN  192 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~---------EG~~~~~~Y~  192 (312)
                      .++.+++..|+.++|++||+|+ ++||.+|+.+...++.++.+.++.+.+|+++.++.+..         ....++..|+
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~  113 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK  113 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC
Confidence            7899999999999999999999 89999999999999999999999988999999998763         4568899999


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCC--ChHHHHHHHHHHHh
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMI--NPQPLGEMLLPFMD  231 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~--~~~~fl~~L~~fl~  231 (312)
                      +..+|+++|||+ .|+.+..+ |+.  ++++|++.|.+.+.
T Consensus       114 v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          114 VTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            999999999997 69999989 998  89999999988875

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.46  E-value=1e-13  Score=118.17  Aligned_cols=112  Identities=16%  Similarity=0.126  Sum_probs=95.6

Q ss_pred             ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      |-+..+|++|++.|++++|+|||+++.+||.+|+.|.+.++.+++|.++++.+||.+.++.+..+   .+..|.+..+|+
T Consensus        27 i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~~~v~~~PT  103 (151)
T 3ph9_A           27 ITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLSPDGQYVPR  103 (151)
T ss_dssp             SCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSC---GGGCTTCCCSSE
T ss_pred             CcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchh---hHhhcCCCCCCE
Confidence            44678999999999999999999999999999999999999999999999989999998754333   356788899999


Q ss_pred             EEEEeCCCCeeEEEecCC-------C---ChHHHHHHHHHHHhhCC
Q 021440          199 VLVIDPITGQKICSWCGM-------I---NPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~-------~---~~~~fl~~L~~fl~~~~  234 (312)
                      ++++++ .|+.+..+.|+       .   +.+.+|+.+.+.+.++.
T Consensus       104 ~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~  148 (151)
T 3ph9_A          104 IMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQ  148 (151)
T ss_dssp             EEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred             EEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence            999998 59988888887       3   45667888888777654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.41  E-value=6.4e-13  Score=115.91  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=88.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhc--------C
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFY--------N  192 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y--------~  192 (312)
                      ..-.+++|++.|++++|.|||+|..+||.+|++|.+.+|.+++|.++++++||+..+|.+..  ..+...|        +
T Consensus        24 W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~--~~l~~~y~~~~q~~~g  101 (173)
T 3ira_A           24 WYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER--PDIDNIYMTVCQIILG  101 (173)
T ss_dssp             CBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc--CcHHHHHHHHHHHHcC
Confidence            45556999999999999999999999999999999999999999999999999999987742  3344445        8


Q ss_pred             CCCCCeEEEEeCCCCeeEEEec-----CCCChHHHHHHHHHHHhhC
Q 021440          193 MDSIPAVLVIDPITGQKICSWC-----GMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~-----G~~~~~~fl~~L~~fl~~~  233 (312)
                      +..+|+++|++| .|+.+....     |..+...|++.|..+.+.+
T Consensus       102 v~g~Pt~v~l~~-dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~  146 (173)
T 3ira_A          102 RGGWPLNIIMTP-GKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIW  146 (173)
T ss_dssp             CCCSSEEEEECT-TSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHH
T ss_pred             CCCCcceeeECC-CCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHH
Confidence            999999999998 588876521     2233455766666665544

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.1e-12  Score=96.06  Aligned_cols=51  Identities=12%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             CCCCchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 021440            1 MESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEA   51 (312)
Q Consensus         1 m~~~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~~   51 (312)
                      |..++.+++++|.+|++||+.++.++|++||++++||||.||+.||+..++
T Consensus        11 ~~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~   61 (67)
T 2dam_A           11 ERDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEG   61 (67)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred             hhhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            445678899999999999433999999999999999999999999997653

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.32  E-value=7e-12  Score=101.62  Aligned_cols=105  Identities=18%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHHHHHHhcCC---CCCCe
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWKVCSFYNM---DSIPA  198 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~~~~~~Y~~---~~~P~  198 (312)
                      .+|++++..|+.++|.+||+++++||.+|+.+.. +|.++.+.+.++.++.|+.++.+. .+...++..|++   ..+|+
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt   94 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPA   94 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSE
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccce
Confidence            4689999999999999999999999999999988 688899999998899999998843 456679999999   99999


Q ss_pred             EEEEeCCCCeeEEEecC-------CCChHHHHHHHHHH
Q 021440          199 VLVIDPITGQKICSWCG-------MINPQPLGEMLLPF  229 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G-------~~~~~~fl~~L~~f  229 (312)
                      ++++|+ .|+.+....|       ..+.+++.+.|.+.
T Consensus        95 ~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           95 VVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence            999997 6999988888       56666665555543

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=99.32  E-value=1.5e-12  Score=89.36  Aligned_cols=43  Identities=21%  Similarity=0.434  Sum_probs=40.0

Q ss_pred             hhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            6 IDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         6 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      ++++++|.+|++| ||++.++|++||++++|||+.||+.||+.+
T Consensus         3 ~~~~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~~~   45 (46)
T 1v92_A            3 EERQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDG   45 (46)
T ss_dssp             THHHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence            3588999999999 889999999999999999999999999864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.30  E-value=9.2e-12  Score=101.86  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=91.3

Q ss_pred             CCcc-ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--hhHHHHHHhc
Q 021440          115 PPFH-VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--SEGWKVCSFY  191 (312)
Q Consensus       115 PP~~-l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--~EG~~~~~~Y  191 (312)
                      |+|. +--...|..++..++  +|++||+++++||.+|+.|...++.++.+.+.++ ++.|+.++.+.  .+...++..|
T Consensus        11 ~~f~~~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~   87 (134)
T 2fwh_A           11 LNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHL   87 (134)
T ss_dssp             CCCEECCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHT
T ss_pred             CCcEEecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHc
Confidence            5554 333456777776554  8999999999999999999999999999998887 49999998876  5677899999


Q ss_pred             CCCCCCeEEEEeCCCCeeE--EEecCCCChHHHHHHHHH
Q 021440          192 NMDSIPAVLVIDPITGQKI--CSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       192 ~~~~~P~i~IIdprTGe~v--~~~~G~~~~~~fl~~L~~  228 (312)
                      ++..+|+++|+|+ .|+.+  ..+.|..++++|.+.|..
T Consensus        88 ~v~~~Pt~~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~  125 (134)
T 2fwh_A           88 NVLGLPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRD  125 (134)
T ss_dssp             TCCSSSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECC-CCCEeeeeeeeeccCHHHHHHHHHh
Confidence            9999999999996 68887  678999999887776654

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=5.5e-12  Score=92.39  Aligned_cols=46  Identities=26%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             CchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            4 ESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         4 ~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ++..++++|.+||+| ||+++++|++||++++||||.||++||+.++
T Consensus        11 ~s~~~~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~   56 (62)
T 2dal_A           11 ASSALKGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDGGG   56 (62)
T ss_dssp             SCHHHHHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred             cCccHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            466789999999999 8999999999999999999999999999764

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=99.24  E-value=3e-12  Score=87.87  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=35.6

Q ss_pred             hhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            6 IDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         6 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      .+++++|++|++||+..+.++|++||+++||||+.||+.||.
T Consensus         3 ~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~   44 (45)
T 3e21_A            3 MDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP   44 (45)
T ss_dssp             CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred             ccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence            368999999999944455699999999999999999999985

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=2.4e-11  Score=90.10  Aligned_cols=49  Identities=24%  Similarity=0.436  Sum_probs=42.7

Q ss_pred             CCCCchh-hH-HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            1 MESESID-KE-SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         1 m~~~s~~-~~-~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      |+-++++ ++ ++|.+|++| ||+++++|++||++++||||.||+.||+...
T Consensus         8 ~~~~m~~~~~q~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~   58 (66)
T 2dzl_A            8 MSVNMDELRHQVMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQETN   58 (66)
T ss_dssp             CSCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred             hhHHhhcCccHHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            4445555 55 899999999 8999999999999999999999999998654

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.03  E-value=1.6e-09  Score=84.40  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++..+++.+|.+||+++++||..|+.+...+   ..+.+-+..++.|+.++.+.  ...++..|++..+|+++|
T Consensus        10 ~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   84 (112)
T 1ep7_A           10 KAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHV   84 (112)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEE
T ss_pred             HHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCcccEEEE
Confidence            4578999998888899999999999999999997654   34555555578999887764  457889999999999877


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.  .|+.+..+.|. +++++.+.|.+.+.
T Consensus        85 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           85 YK--DGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EE--TTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EE--CCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            73  69999889998 88888888877663

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.02  E-value=8.2e-10  Score=88.46  Aligned_cols=99  Identities=10%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      +..++|.+||+++++||..|+.+...+   ..+.+-++.++.|+.++.+..+...++..|++..+|+++|+++ .|+.+.
T Consensus        22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~-~G~~~~   97 (126)
T 2l57_A           22 EAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDK-EGNKFY   97 (126)
T ss_dssp             TCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECT-TCCEEE
T ss_pred             HHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECC-CCCEEE
Confidence            556789999999999999999998755   4555555567999999855666778999999999999999997 699998


Q ss_pred             EecCCCChHHHHHHHHHHHhhCC
Q 021440          212 SWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       212 ~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      .+.|..+.++|.+.|.+.+...+
T Consensus        98 ~~~G~~~~~~l~~~l~~~~~~~~  120 (126)
T 2l57_A           98 VHQGLMRKNNIETILNSLGVKEG  120 (126)
T ss_dssp             EEESCCCHHHHHHHHHHHCCCCC
T ss_pred             EecCCCCHHHHHHHHHHHhcccc
Confidence            99999999988887777665443

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.97  E-value=3.8e-09  Score=85.22  Aligned_cols=100  Identities=11%  Similarity=0.166  Sum_probs=81.2

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      --..+|++++..|+.++|++||+++++||..|+.+...      +.++.++  ++.|+.++.+.  ...+++.|++..+|
T Consensus        22 ~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~------l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~P   93 (124)
T 1xfl_A           22 HTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPF------FADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMP   93 (124)
T ss_dssp             SSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHH------HHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSS
T ss_pred             CCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCcEEEEEECcc--CHHHHHHcCCCccC
Confidence            34567999999999999999999999999999999754      3444443  68899887764  45788999999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +++|+.  .|+.+..+.|. +++++.+.|.+++
T Consensus        94 t~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l  123 (124)
T 1xfl_A           94 TFMFLK--EGKILDKVVGA-KKDELQSTIAKHL  123 (124)
T ss_dssp             EEEEEE--TTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEE--CCEEEEEEeCC-CHHHHHHHHHHhc
Confidence            988873  69999889994 8888877777654

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.96  E-value=3.8e-09  Score=84.64  Aligned_cols=104  Identities=12%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++.+   .+.+|.+||+++++||..|+.+...+   +.+.+-++.++.|..++.+.  ...++..|++..+|++.+
T Consensus        24 ~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~   95 (130)
T 2dml_A           24 PSNFNREV---IQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADK--HQSLGGQYGVQGFPTIKI   95 (130)
T ss_dssp             TTTHHHHT---TTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHHTCCSSSEEEE
T ss_pred             HHHHHHHH---hcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCC--CHHHHHHcCCCccCEEEE
Confidence            44566644   35689999999999999999998765   55666666678888887664  456889999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      +++ .|+.+..+.|..+.+++++.|.+.+..++
T Consensus        96 ~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~~  127 (130)
T 2dml_A           96 FGA-NKNKPEDYQGGRTGEAIVDAALSALRSGP  127 (130)
T ss_dssp             ESS-CTTSCEECCSCCSHHHHHHHHHHHHHHSS
T ss_pred             EeC-CCCeEEEeecCCCHHHHHHHHHHHHhcCC
Confidence            996 35557778999999999999999887654

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.96  E-value=2.7e-09  Score=84.94  Aligned_cols=100  Identities=25%  Similarity=0.316  Sum_probs=78.3

Q ss_pred             cccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCC
Q 021440          118 HVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       118 ~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      ...-..+|++++..+  ++|++||+++++||.+|+.+..      .+.++.++  ++.|..++.+  +...++..|++..
T Consensus        15 ~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d--~~~~l~~~~~v~~   84 (116)
T 3qfa_C           15 QIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKP------FFHSLSEKYSNVIFLEVDVD--DCQDVASECEVKS   84 (116)
T ss_dssp             CCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHH------HHHHHHTTCTTSEEEEEETT--TTHHHHHHTTCCS
T ss_pred             CCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECC--CCHHHHHHcCCcc
Confidence            334456678777544  7999999999999999999964      44555443  3788888776  4567899999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +|+++|+  +.|+.+..+.|. +++++.+.|.+.|
T Consensus        85 ~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           85 MPTFQFF--KKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             SSEEEEE--SSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             ccEEEEE--eCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            9999999  369999999998 8888888777653

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.95  E-value=4.5e-09  Score=82.33  Aligned_cols=104  Identities=15%  Similarity=0.224  Sum_probs=84.1

Q ss_pred             cccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCC
Q 021440          118 HVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       118 ~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      .+-...+|++++..|+..+|+++|+++++||..|+.+..      .+.++.++  ++.|..++.+.  ...++..|++..
T Consensus        10 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~   81 (118)
T 2vm1_A           10 ACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAP------VFAEYAKKFPGAIFLKVDVDE--LKDVAEAYNVEA   81 (118)
T ss_dssp             ECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCS
T ss_pred             EecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHCCCcEEEEEEccc--CHHHHHHcCCCc
Confidence            333456799999999999999999999999999999964      34555444  68888887664  567889999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +|+++|+.  .|+.+..+.| .+++++.+.|.+++..
T Consensus        82 ~Pt~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           82 MPTFLFIK--DGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             BSEEEEEE--TTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             CcEEEEEe--CCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            99998884  6999988899 4888888888888754

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.95  E-value=5.1e-09  Score=82.99  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=83.6

Q ss_pred             CccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCC
Q 021440          116 PFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       116 P~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      ...+.-..+|++++..|+..+|++||+++++||..|+.+...+   ..+.+-.. ++.|..++.+.  ...++..|++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~   87 (122)
T 2vlu_A           14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVF---ADLAKKFP-NAVFLKVDVDE--LKPIAEQFSVEA   87 (122)
T ss_dssp             CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCS
T ss_pred             ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC-CcEEEEEECCC--CHHHHHHcCCCc
Confidence            3444556779999999999999999999999999999996532   22333333 37888887764  457889999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +|+++++.  .|+.+..+.|.. ++++.+.|.+.+.
T Consensus        88 ~Pt~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           88 MPTFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SSEEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             ccEEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            99988773  699998899988 8888888877764

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.95  E-value=3.6e-09  Score=83.97  Aligned_cols=95  Identities=23%  Similarity=0.297  Sum_probs=71.6

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++..+  .+|+++|+++++||.+|+.|...+   +.+.+.. .+++|+.++.+  +...++..|++.++|++++
T Consensus         8 ~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~---~~~~~~~-~~~~~~~vd~d--~~~~l~~~~~V~~~PT~~~   79 (105)
T 3zzx_A            8 QEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKL---EELSQSM-SDVVFLKVDVD--ECEDIAQDNQIACMPTFLF   79 (105)
T ss_dssp             HHHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTEEEEEEETT--TCHHHHHHTTCCBSSEEEE
T ss_pred             HHHHHHHHHhc--CCCEEEEEEECCCCCCccCCCcch---hhhhhcc-CCeEEEEEecc--cCHHHHHHcCCCeecEEEE
Confidence            45678877654  579999999999999999996543   2233322 35889888776  4567999999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                      +.  .|+.+..+.|. +++++.+.|.
T Consensus        80 ~~--~G~~v~~~~G~-~~~~l~~~i~  102 (105)
T 3zzx_A           80 MK--NGQKLDSLSGA-NYDKLLELVE  102 (105)
T ss_dssp             EE--TTEEEEEEESC-CHHHHHHHHH
T ss_pred             EE--CCEEEEEEeCc-CHHHHHHHHH
Confidence            85  69999999995 6766544443

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.94  E-value=3.3e-09  Score=81.64  Aligned_cols=99  Identities=18%  Similarity=0.264  Sum_probs=79.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      -..+|++++    .++|++||+++++||..|+.+...+   ..+.+-...++.|..++.+  +...++..|++..+|+++
T Consensus        10 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~~Pt~~   80 (109)
T 3tco_A           10 TEENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVD--ENQKIADKYSVLNIPTTL   80 (109)
T ss_dssp             CTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TCHHHHHHTTCCSSSEEE
T ss_pred             cHHHHHHHH----hcCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEccc--cCHHHHHhcCcccCCEEE
Confidence            345677766    3489999999999999999997543   3444445557888888765  455789999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      ++  +.|+.+..+.|..+.++|.+.|.+.|
T Consensus        81 ~~--~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           81 IF--VNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EE--ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EE--cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            99  36999999999999999988888765

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.92  E-value=9.7e-09  Score=79.53  Aligned_cols=91  Identities=12%  Similarity=0.178  Sum_probs=77.1

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEe
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW  213 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~  213 (312)
                      ..+|.+||+++++||..|+.+...+   +.+.+....++.|..++.+.  ...++..|++..+|+++++.  .|+.+..+
T Consensus        20 ~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~g~~~~~~   92 (111)
T 3gnj_A           20 DEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEE--EKTLFQRFSLKGVPQILYFK--DGEYKGKM   92 (111)
T ss_dssp             TSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSCEEEEEE--TTEEEEEE
T ss_pred             hcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCc--ChhHHHhcCCCcCCEEEEEE--CCEEEEEE
Confidence            6789999999999999999997654   55555666678899887765  45789999999999999994  69999899


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 021440          214 CGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       214 ~G~~~~~~fl~~L~~fl~  231 (312)
                      .|..+.+++.+.|.+.+.
T Consensus        93 ~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           93 AGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             ESSCCHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHHHHhc
Confidence            999999999999888775

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.91  E-value=6.2e-09  Score=84.64  Aligned_cols=103  Identities=14%  Similarity=0.157  Sum_probs=84.6

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      ....+|++++..|+.++|++||+++++||..|+.+...      +.++.++  ++.|+.++.+.  ...++..|++..+|
T Consensus        30 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~------l~~l~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~P  101 (139)
T 3d22_A           30 TTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY------YIELSENYPSLMFLVIDVDE--LSDFSASWEIKATP  101 (139)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCEES
T ss_pred             CCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCCEEEEEeCcc--cHHHHHHcCCCccc
Confidence            34568999999999999999999999999999999754      3444433  58888887764  45789999999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +++|+  +.|+.+..+.|. +++++.+.|.+.+..-
T Consensus       102 t~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~~~~~  134 (139)
T 3d22_A          102 TFFFL--RDGQQVDKLVGA-NKPELHKKITAILDSL  134 (139)
T ss_dssp             EEEEE--ETTEEEEEEESC-CHHHHHHHHHHHHHTS
T ss_pred             EEEEE--cCCeEEEEEeCC-CHHHHHHHHHHHhccC
Confidence            99888  369999999998 8888888888887653

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.90  E-value=1.4e-09  Score=88.91  Aligned_cols=97  Identities=5%  Similarity=-0.082  Sum_probs=81.0

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEec
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWC  214 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~  214 (312)
                      ..+++||+|+.+||.+|++|++.|.....+..-.+ .+.+..++++......++..|++...|++++++  .|+.+.++.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~--~G~ev~Ri~   93 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELARPVTFTPTFVLMA--GDVESGRLE   93 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEE--TTEEEEEEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHCCCCCCCEEEEEE--CCEEEeeec
Confidence            34789999999999999999999988877655443 356667777776666678889999999999999  699999999


Q ss_pred             CCCChHHHHHHHHHHHhhCC
Q 021440          215 GMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       215 G~~~~~~fl~~L~~fl~~~~  234 (312)
                      |+++++.|+..|...+.+.+
T Consensus        94 G~~~~~~f~~~L~~~l~~~~  113 (116)
T 3dml_A           94 GYPGEDFFWPMLARLIGQAE  113 (116)
T ss_dssp             CCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhhcC
Confidence            99999999999999887653

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.90  E-value=9.1e-09  Score=80.88  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=79.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ...+|++++     .+|.+||+++++||..|+.+...+   +.+.+-++.++.|+.++.+..  ..++..|++..+|++.
T Consensus         7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~   76 (112)
T 2voc_A            7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDEN--QETAGKYGVMSIPTLL   76 (112)
T ss_dssp             CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTC--CSHHHHTTCCSBSEEE
T ss_pred             cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCCcccEEE
Confidence            345677777     789999999999999999998765   556666666899999887653  4688999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ++ . .|+.+..+.|..+.++|.+.|.+.+.
T Consensus        77 ~~-~-~G~~~~~~~G~~~~~~l~~~l~~~~~  105 (112)
T 2voc_A           77 VL-K-DGEVVETSVGFKPKEALQELVNKHLL  105 (112)
T ss_dssp             EE-E-TTEEEEEEESCCCHHHHHHHHHTTSC
T ss_pred             EE-e-CCEEEEEEeCCCCHHHHHHHHHHHHH
Confidence            99 3 69999999999998876666554443

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.89  E-value=6.4e-09  Score=80.81  Aligned_cols=100  Identities=12%  Similarity=0.189  Sum_probs=82.0

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ...+|++++..|+..+|.++|+++++||..|+.+...      +.++.++  ++.|+.++.+.  ...++..|++..+|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~------l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A           11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPI------FAELAKKFPNVTFLKVDVDE--LKAVAEEWNVEAMPT   82 (113)
T ss_dssp             SHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHH------HHHHHHHCSSEEEEEEETTT--CHHHHHHHHCSSTTE
T ss_pred             cHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHH------HHHHHHhCCCcEEEEEEccc--cHHHHHhCCCCcccE
Confidence            4567899999999999999999999999999999643      4444443  68888887764  456888999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ++++.  .|+.+..+.| .+++++.+.|.+++.
T Consensus        83 ~~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           83 FIFLK--DGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             EEEEE--TTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             EEEEe--CCEEEEEEec-CCHHHHHHHHHHhhc
Confidence            99884  6999988899 588888888887764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=8.9e-09  Score=82.47  Aligned_cols=101  Identities=13%  Similarity=0.135  Sum_probs=81.8

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      .+|++++   .+.+|.+||+++++||..|+.+...+   ..+.+-++    .++.|..++.+.  ...++..|++..+|+
T Consensus        15 ~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt   86 (133)
T 1x5d_A           15 DSFDKNV---LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRGFPT   86 (133)
T ss_dssp             THHHHHT---TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCSSSE
T ss_pred             hhHHHHH---hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCeeCe
Confidence            4455443   35689999999999999999997655   45555555    679999887764  457889999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +.|+++  |+.+..+.|..+.+++.+.|.+.+...
T Consensus        87 ~~~~~~--g~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           87 IKIFQK--GESPVDYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             EEEEET--TEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred             EEEEeC--CCceEEecCCCCHHHHHHHHHHHhhcc
Confidence            999996  888888999999999999999988764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.89  E-value=9.3e-09  Score=79.98  Aligned_cols=101  Identities=16%  Similarity=0.143  Sum_probs=81.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++.+   ...+|.+||+++++||..|+.+...+   +.+.+.+..++.|+.++.+.  ...++..|++..+|++++
T Consensus        14 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~   85 (115)
T 1thx_A           14 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRL   85 (115)
T ss_dssp             GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEE
T ss_pred             ccchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCceeEEEE
Confidence            34565554   46789999999999999999998755   55666666678888887764  456889999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      + + .|+.+..+.|..+.+++.+.|.+.+..
T Consensus        86 ~-~-~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           86 V-K-GEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             E-E-TTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             E-c-CCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence            9 3 699998899999999999888887754

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.88  E-value=1.4e-08  Score=83.71  Aligned_cols=103  Identities=13%  Similarity=0.152  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      -..+|++++    ..+|++||+++++||..|+.+...+   ..+.+-++.++.|..++.+.  ...++..|++..+|+++
T Consensus        44 ~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~  114 (148)
T 3p2a_A           44 TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEA--EPALSTRFRIRSIPTIM  114 (148)
T ss_dssp             CTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred             CHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcC--CHHHHHHCCCCccCEEE
Confidence            345677666    7899999999999999999996544   44555555678898887664  45788999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ++.  .|+.+..+.|..+.++|.+.|.+.+...+
T Consensus       115 ~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~~  146 (148)
T 3p2a_A          115 LYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRDP  146 (148)
T ss_dssp             EEE--TTEEEEEESSCCCHHHHHHHHHHHHHSCC
T ss_pred             EEE--CCeEEEEEeCCCCHHHHHHHHHHHhcccC
Confidence            995  69999999999999999999999887643

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.87  E-value=9.6e-09  Score=78.75  Aligned_cols=97  Identities=19%  Similarity=0.162  Sum_probs=79.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      -..+|++++     .+|.+||+++++||..|+.+...+   ..+.+-++.++.|..++.+.  ...++..|++..+|+++
T Consensus         9 ~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~   78 (106)
T 3die_A            9 TDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDE--NPSTAAKYEVMSIPTLI   78 (106)
T ss_dssp             CTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSBSEEE
T ss_pred             CHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcccCEEE
Confidence            456677777     799999999999999999997655   56666666678888887654  45688999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +++  .|+.+..+.|..+.+++.+.|.+.
T Consensus        79 ~~~--~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           79 VFK--DGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEE--TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             EEe--CCeEEEEEeCCCCHHHHHHHHHHh
Confidence            996  699999999999988877776543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.86  E-value=1.2e-08  Score=78.68  Aligned_cols=95  Identities=16%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      .....+.+|.+||+++++||..|+.+...+   ..+.+-++.++.|..++.+.  ...++..|++..+|++.++.  .|+
T Consensus        12 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~   84 (107)
T 1dby_A           12 KNVVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVFK--GGK   84 (107)
T ss_dssp             HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEES--SSS
T ss_pred             HHHHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCC--CHHHHHHCCCCcCCEEEEEe--CCE
Confidence            334456789999999999999999997654   45555566678888887664  45688999999999988873  699


Q ss_pred             eEEEecCCCChHHHHHHHHHHH
Q 021440          209 KICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       209 ~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      .+..+.|..+.+++.+.|.+++
T Consensus        85 ~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           85 KCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEEEeCCCCHHHHHHHHHHHh
Confidence            9988999999998888887765

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.86  E-value=1.3e-08  Score=80.98  Aligned_cols=92  Identities=13%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      ..+.+|.+||+++++||..|+.+...+   ..+.+-+..++.|+.++.+.  ...++..|++..+|+++|+  +.|+.+.
T Consensus        27 v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~--~~G~~~~   99 (119)
T 1w4v_A           27 VVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSAVPTVLAM--KNGDVVD   99 (119)
T ss_dssp             TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEETTT--THHHHHHTTCCSSSEEEEE--ETTEEEE
T ss_pred             HHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCcccEEEEE--eCCcEEE
Confidence            345789999999999999999997654   34444445578898887765  4478899999999999999  3699988


Q ss_pred             EecCCCChHHHHHHHHHHH
Q 021440          212 SWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       212 ~~~G~~~~~~fl~~L~~fl  230 (312)
                      .+.|..+++.+.+.|.+.+
T Consensus       100 ~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A          100 KFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEESCCCHHHHHHHHHHHH
T ss_pred             EEcCCCCHHHHHHHHHHHh
Confidence            8999999998888887765

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.84  E-value=1.3e-08  Score=78.14  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=77.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++++    +.+|++||+++++||..|+.+...+   ..+.+-+..++.|+.++.+.  ...++..|++..+|++.++
T Consensus         9 ~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            9 QNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMSIPTVILF   79 (109)
T ss_dssp             TTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             hHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCC--CHhHHHhCCCCcCCEEEEE
Confidence            4566443    5689999999999999999997654   45655666679999887765  3468899999999999999


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                        ..|+.+..+.|..+.+++.+.|.+.+
T Consensus        80 --~~g~~~~~~~g~~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           80 --KDGQPVEVLVGAQPKRNYQAKIEKHL  105 (109)
T ss_dssp             --ETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             --eCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence              36999988999998888777776654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.84  E-value=4.6e-09  Score=80.76  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      .+.+.+|.+||+++++||..|+.+...+   +.+.+-...++.|..++.+.  ...++..|++..+|++.++ + .|+.+
T Consensus        12 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~-~-~G~~~   84 (105)
T 1nsw_A           12 QAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILF-K-GGRPV   84 (105)
T ss_dssp             HHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE-E-TTEEE
T ss_pred             HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcC--CHHHHHHcCCccccEEEEE-e-CCeEE
Confidence            3456789999999999999999997654   45555566668888887764  4578899999999999999 3 69988


Q ss_pred             EEecCCCChHHHHHHHHHH
Q 021440          211 CSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       211 ~~~~G~~~~~~fl~~L~~f  229 (312)
                      ..+.|..+++++.+.|.+.
T Consensus        85 ~~~~G~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           85 KQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             EEEESCCCHHHHHHHTTTT
T ss_pred             EEEecCCCHHHHHHHHHHH
Confidence            8899999888776666543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.84  E-value=1.5e-08  Score=77.84  Aligned_cols=97  Identities=15%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++   .+.+|.+||+++++||..|+.+...+   ..+.+-+..++.|+.++.+.  ...++..|++..+|++++
T Consensus         9 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~   80 (107)
T 2i4a_A            9 DSSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDD--NPETPNAYQVRSIPTLML   80 (107)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTT--CCHHHHHTTCCSSSEEEE
T ss_pred             hhhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCC--CHHHHHhcCCCccCEEEE
Confidence            34565544   46789999999999999999998765   55666666689999887764  346888999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      +  ..|+.+..+.|..+.+++.+.|.+
T Consensus        81 ~--~~G~~~~~~~G~~~~~~l~~~l~~  105 (107)
T 2i4a_A           81 V--RDGKVIDKKVGALPKSQLKAWVES  105 (107)
T ss_dssp             E--ETTEEEEEEESCCCHHHHHHHHHH
T ss_pred             E--eCCEEEEEecCCCCHHHHHHHHHh
Confidence            9  369999899999998887776655

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.84  E-value=4.7e-09  Score=89.22  Aligned_cols=118  Identities=18%  Similarity=0.174  Sum_probs=85.6

Q ss_pred             HHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh--hccEEEEEeccCChhHH
Q 021440          108 ILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGW  185 (312)
Q Consensus       108 ~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i--~~nFIfwq~~~ds~EG~  185 (312)
                      .+...|.+.+..   .+|++++..+..++|++||+++.+||.+|+.+...+ ..  +.++.  +-+||...++.+...  
T Consensus        21 ~~~~~~~~~i~w---~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l-~~--~~~~~~~~~~~~~v~~d~~~~~--   92 (164)
T 1sen_A           21 GLGKGFGDHIHW---RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKF-AE--STEISELSHNFVMVNLEDEEEP--   92 (164)
T ss_dssp             -CCTTSCTTSCB---CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH-HT--CHHHHHHHTTSEEEEEEGGGSC--
T ss_pred             cccccccccccc---cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHH-HH--HHHHhhcCCeEEEEEecCCchH--
Confidence            334455555543   689999999999999999999999999999998744 33  22222  345666555433221  


Q ss_pred             HHHHhcCC--CCCCeEEEEeCCCCeeEEEecCC----------CChHHHHHHHHHHHhhCCC
Q 021440          186 KVCSFYNM--DSIPAVLVIDPITGQKICSWCGM----------INPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       186 ~~~~~Y~~--~~~P~i~IIdprTGe~v~~~~G~----------~~~~~fl~~L~~fl~~~~~  235 (312)
                       ++..|.+  ..+|+++|+|+ .|+.+..+.|.          .++++|++.|.+.++...-
T Consensus        93 -~~~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  152 (164)
T 1sen_A           93 -KDEDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG  152 (164)
T ss_dssp             -SCGGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred             -HHHHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence             4566777  66999999996 68888777784          7889999999998876543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.84  E-value=2.4e-08  Score=75.70  Aligned_cols=98  Identities=14%  Similarity=0.184  Sum_probs=77.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++    ..+|.++|+++++||..|+.+...+   ..+.+-+.. +.|..++.+.  ...++..|++..+|++.+
T Consensus         6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~   75 (104)
T 2e0q_A            6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMSLPTVIF   75 (104)
T ss_dssp             TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSCEEEE
T ss_pred             HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcCC-ceEEEEECCC--CHHHHHhCCccccCEEEE
Confidence            34677776    4689999999999999999997543   233333333 7888887664  456889999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +  ..|+.+..+.|..+.+++.+.|.+.+.
T Consensus        76 ~--~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           76 F--KDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             E--ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             E--ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            9  369999899999999998888887764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.83  E-value=2.1e-08  Score=77.44  Aligned_cols=98  Identities=17%  Similarity=0.186  Sum_probs=78.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++..   .+.+|.+||+++++||..|+.+...+   ..+.+-++.++.|..++.+.  ...++..|++..+|++.++
T Consensus        10 ~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A           10 DSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CTTHHHHTTCCSSSEEEEE
T ss_pred             hhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCC--CHHHHHHcCCcccCEEEEE
Confidence            4455443   46789999999999999999997654   45555556679999887765  3468889999999999999


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                        +.|+.+..+.|..+++++.+.|.+.+
T Consensus        82 --~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           82 --KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             --ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             --eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence              36999989999999998888887765

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.82  E-value=2e-08  Score=78.34  Aligned_cols=97  Identities=15%  Similarity=0.274  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      .+|++++.. +..+|++||+++++||.+|+.+...      +.++.+    .++.|+.++.+.  ...++..|++..+|+
T Consensus         9 ~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~------~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt   79 (112)
T 3d6i_A            9 EQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQV------FEAISNEPSNSNVSFLSIDADE--NSEISELFEISAVPY   79 (112)
T ss_dssp             HHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHH------HHHHHHCGGGTTSEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             HHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHH------HHHHHHhcCCCCEEEEEEeccc--CHHHHHHcCCCcccE
Confidence            457776654 4668999999999999999999753      444444    368899887765  456889999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ++++.  .|+.+..+.|. .++++.+.|.+.+.
T Consensus        80 ~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           80 FIIIH--KGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             EEEEE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             EEEEE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence            99884  69999999997 55667777777664

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.82  E-value=1.2e-08  Score=79.51  Aligned_cols=92  Identities=18%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      .+.+|.++|+++++||..|+.+...+   ..+.+-+..++.|+.++.+.  ...++..|++..+|+++++.  .|+.+..
T Consensus        20 ~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~~~   92 (112)
T 1t00_A           20 LKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMSIPTLNVYQ--GGEVAKT   92 (112)
T ss_dssp             TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEEE
T ss_pred             hhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCcccEEEEEe--CCEEEEE
Confidence            45689999999999999999997543   34555555568898887765  45688999999999988873  6999989


Q ss_pred             ecCCCChHHHHHHHHHHHh
Q 021440          213 WCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       213 ~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.|..+.+++.+.|.+.|.
T Consensus        93 ~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           93 IVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EESCCCHHHHHHHTHHHHC
T ss_pred             EeCCCCHHHHHHHHHHHhh
Confidence            9999999999888887764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.82  E-value=1.6e-08  Score=83.03  Aligned_cols=103  Identities=13%  Similarity=0.049  Sum_probs=84.8

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      +-++........+|++||+++++||..|+.+...+   +.+.+-+..++.|..++.+.  ...++..|++..+|+++|+.
T Consensus        12 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~   86 (140)
T 3hz4_A           12 EDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQGTPTFKFFC   86 (140)
T ss_dssp             CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCEESEEEEEE
T ss_pred             chHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCc--CHhHHHHCCCCcCCEEEEEe
Confidence            33444445666799999999999999999998765   66677777778898887764  45788999999999999984


Q ss_pred             CCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          204 PITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       204 prTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                        .|+.+..+.|..++++|.+.|.+.+...
T Consensus        87 --~G~~~~~~~G~~~~~~l~~~l~~~l~~~  114 (140)
T 3hz4_A           87 --HGRPVWEQVGQIYPSILKNAVRDMLQHG  114 (140)
T ss_dssp             --TTEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             --CCcEEEEEcCCCCHHHHHHHHHHHhccc
Confidence              6999999999999999999999998654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.81  E-value=1.6e-08  Score=82.24  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=74.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEec
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWC  214 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~  214 (312)
                      .+|.+||+++++||..|+.+...+   ..+.+-++.++.|+.++.+.  ...++..|++..+|+++|+++ .|+.+ .+.
T Consensus        50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~-~g~~~-~~~  122 (141)
T 3hxs_A           50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDK--EPELARDFGIQSIPTIWFVPM-KGEPQ-VNM  122 (141)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEECS-SSCCE-EEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHHcCCCCcCEEEEEeC-CCCEE-EEe
Confidence            589999999999999999997655   56666666678898887764  457899999999999999996 57765 788


Q ss_pred             CCCChHHHHHHHHHHHh
Q 021440          215 GMINPQPLGEMLLPFMD  231 (312)
Q Consensus       215 G~~~~~~fl~~L~~fl~  231 (312)
                      |..+.++|.+.|.+.|.
T Consensus       123 G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          123 GALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             SCCCHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHc
Confidence            99999998888877664

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.81  E-value=1.9e-08  Score=77.15  Aligned_cols=96  Identities=27%  Similarity=0.328  Sum_probs=73.6

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++++..+  ++|.++|+++++||..|+.+...+   ..+.+-.. ++.|..++.+  +...++..|++..+|+++++
T Consensus         9 ~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~   80 (105)
T 3m9j_A            9 TAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVD--DCQDVASESEVKSMPTFQFF   80 (105)
T ss_dssp             HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETT--TCHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhh--hhHHHHHHcCCCcCcEEEEE
Confidence            4466665433  689999999999999999997543   22333332 4788887665  45678999999999999999


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      .  .|+.+..+.|. +++++.+.|.+.
T Consensus        81 ~--~g~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           81 K--KGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             E--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             E--CCeEEEEEeCC-CHHHHHHHHHHh
Confidence            5  59999999998 888887777664

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.81  E-value=9.1e-09  Score=82.93  Aligned_cols=92  Identities=5%  Similarity=0.118  Sum_probs=76.1

Q ss_pred             HHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          129 KDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      ...+..++|.+||+++++||..|+.+...+   +.+.+-++.++.|..++.+.  ...++..|++..+|+++++.  .|+
T Consensus        35 ~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~--~G~  107 (128)
T 3ul3_B           35 INGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDK--NESLARKFSVKSLPTIILLK--NKT  107 (128)
T ss_dssp             SSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGG--CHHHHHHTTCCSSSEEEEEE--TTE
T ss_pred             HHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCCcCEEEEEE--CCE
Confidence            444567899999999999999999998765   56666667789999887664  45789999999999999994  599


Q ss_pred             eEEEecCCCChHHHHHHHH
Q 021440          209 KICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       209 ~v~~~~G~~~~~~fl~~L~  227 (312)
                      .+..+.|..+.+++.+.|.
T Consensus       108 ~~~~~~G~~~~~~l~~~l~  126 (128)
T 3ul3_B          108 MLARKDHFVSSNDLIALIK  126 (128)
T ss_dssp             EEEEESSCCCHHHHHHHHT
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            9999999999888766654

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.81  E-value=2.4e-08  Score=78.33  Aligned_cols=89  Identities=21%  Similarity=0.305  Sum_probs=69.0

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCC
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITG  207 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTG  207 (312)
                      +.+.+++|++||+++++||.+|+.+...      +.++.++  ++.|..++.+  +...++..|++..+|++++++  .|
T Consensus        18 ~~~~~~~k~vlv~f~a~wC~~C~~~~p~------l~~l~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~--~G   87 (109)
T 3f3q_A           18 DSAIAQDKLVVVDFYATWCGPCKMIAPM------IEKFSEQYPQADFYKLDVD--ELGDVAQKNEVSAMPTLLLFK--NG   87 (109)
T ss_dssp             HHHTTSSSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETT--TCHHHHHHTTCCSSSEEEEEE--TT
T ss_pred             HHHHhcCCEEEEEEECCcCHhHHHHHHH------HHHHHHHCCCCEEEEEECC--CCHHHHHHcCCCccCEEEEEE--CC
Confidence            3455679999999999999999999754      3444433  4777777665  445688999999999999998  59


Q ss_pred             eeEEEecCCCChHHHHHHHHHH
Q 021440          208 QKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       208 e~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +.+..+.|. +++++.+.|.+.
T Consensus        88 ~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           88 KEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEEEeCC-CHHHHHHHHHhh
Confidence            999999998 677766666543

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.81  E-value=1.2e-08  Score=83.21  Aligned_cols=95  Identities=13%  Similarity=0.170  Sum_probs=77.3

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEec
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWC  214 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~  214 (312)
                      .+|.+||+++++||..|+.+...+   ..+.+-++.++.|..++.+.  ...++..|++..+|+++++|+ .|+.+ .+.
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-~G~~~-~~~  109 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEK--EQELAGAFGIRSIPSILFIPM-EGKPE-MAQ  109 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSCEEEEECS-SSCCE-EEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCC--CHHHHHHcCCCCCCEEEEECC-CCcEE-EEe
Confidence            579999999999999999997654   45555566678899887764  457889999999999999986 58876 678


Q ss_pred             CCCChHHHHHHHHHHHhhCCCC
Q 021440          215 GMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       215 G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      |..+++++.+.|.+.+.....+
T Consensus       110 G~~~~~~l~~~l~~~~~~~~~~  131 (136)
T 2l5l_A          110 GAMPKASFKKAIDEFLLKKEGH  131 (136)
T ss_dssp             SCCCHHHHHHHHHHHHTSCTTS
T ss_pred             CCCCHHHHHHHHHHHhhccCCC
Confidence            9999999988888887665443

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.80  E-value=1.1e-08  Score=82.58  Aligned_cols=98  Identities=13%  Similarity=0.039  Sum_probs=76.6

Q ss_pred             HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-------------------------hhHH
Q 021440          131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-------------------------SEGW  185 (312)
Q Consensus       131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-------------------------~EG~  185 (312)
                      .+.-++|++||++.++||..|+.+...+   ..+.+-+.+++.|+.++.+.                         ....
T Consensus        24 ~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  100 (148)
T 2b5x_A           24 EQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDH  100 (148)
T ss_dssp             HHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSC
T ss_pred             hhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCch
Confidence            3445789999999999999999986543   23444444447777777653                         2234


Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      .++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.|..
T Consensus       101 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A          101 ALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             HHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             hHHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            6888999999999999997 699999999999999999999988865

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.79  E-value=1.5e-08  Score=77.50  Aligned_cols=98  Identities=16%  Similarity=0.246  Sum_probs=77.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|+++.   .+.+|.++|+++++||..|+.+...+   ..+.+-++.++.|..++.+.  ...++..|++..+|+++++
T Consensus         8 ~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            8 SSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDE--APGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             TTHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             hhHHHHH---hcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcc--hHHHHHhCCCCcccEEEEE
Confidence            3455543   34689999999999999999998765   45666666678888887664  4578899999999998887


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      .  .|+.+..+.|..+++++.+.|.++|
T Consensus        80 ~--~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           80 K--NGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             E--TTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             e--CCeEEEEEecCCCHHHHHHHHHhhC
Confidence            4  6999988999999998888877653

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.79  E-value=1.7e-08  Score=81.95  Aligned_cols=99  Identities=17%  Similarity=0.196  Sum_probs=79.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++..   .+.+|.+||+++++||..|+.+...+   ..+.+.++.++.|+.++.+..  ..++..|++..+|++++
T Consensus        29 ~~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~  100 (128)
T 2o8v_B           29 DDSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL  100 (128)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTC--CTTSGGGTCCSSSEEEE
T ss_pred             hhhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCccCEEEE
Confidence            34555443   46789999999999999999997654   455555666799998877653  46888999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +  ..|+.+..+.|..+.+++.+.|.+.|
T Consensus       101 ~--~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          101 F--KNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             E--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             E--eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            9  36999988999999998888887765

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.78  E-value=4.1e-08  Score=79.52  Aligned_cols=100  Identities=11%  Similarity=0.171  Sum_probs=78.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ..+|++++    +++|.+||+++++||..|+.+...+   ..+.+.++..   ++|..++.+.  ...++..|++..+|+
T Consensus        24 ~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt   94 (140)
T 2dj1_A           24 DGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATS--ASMLASKFDVSGYPT   94 (140)
T ss_dssp             TTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTT--CHHHHHHTTCCSSSE
T ss_pred             hHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcc--cHHHHHHCCCCccCe
Confidence            45566655    4689999999999999999997654   3444445443   8888887654  467889999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      ++|+.  .|+ +..+.|..+.++|.+.|.+.+...
T Consensus        95 ~~~~~--~G~-~~~~~g~~~~~~l~~~l~~~~~~~  126 (140)
T 2dj1_A           95 IKILK--KGQ-AVDYDGSRTQEEIVAKVREVSQPD  126 (140)
T ss_dssp             EEEEE--TTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred             EEEEE--CCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence            99994  588 778899999999988888887654

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.78  E-value=3.2e-08  Score=80.23  Aligned_cols=97  Identities=14%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++++    ..+|++||+++++||..|+.+...+   ..+.+-. .++.|+.++.+.  ...++..|++..+|+++|+
T Consensus        28 ~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~i~   97 (125)
T 1r26_A           28 EQFRNIM----SEDILTVAWFTAVWCGPCKTIERPM---EKIAYEF-PTVKFAKVDADN--NSEIVSKCRVLQLPTFIIA   97 (125)
T ss_dssp             HHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHH---HHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHH----ccCCEEEEEEECCcCHhHHHHHHHH---HHHHHHC-CCCEEEEEECCC--CHHHHHHcCCCcccEEEEE
Confidence            4466665    6899999999999999999997543   2232222 368999887764  4568899999999998887


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                        +.|+.+..+.| .+++++.+.|.+++..
T Consensus        98 --~~G~~~~~~~G-~~~~~l~~~l~~~l~~  124 (125)
T 1r26_A           98 --RSGKMLGHVIG-ANPGMLRQKLRDIIKD  124 (125)
T ss_dssp             --ETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred             --eCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence              36999988999 6888888888887754

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.78  E-value=4.1e-08  Score=75.16  Aligned_cols=96  Identities=17%  Similarity=0.253  Sum_probs=74.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++++..  .++|+++|+++++||..|+.+...+   ..+.+-++.++.|+.++.+.  ...++..|++..+|+++++
T Consensus         9 ~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            9 ADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             HHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhCCCeEEEEEeccc--hHHHHHHcCCCcccEEEEE
Confidence            456666643  4789999999999999999997654   34555555678999887764  4568899999999998877


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      .  .|+.+..+.| .+++++.+.|.+
T Consensus        82 ~--~G~~~~~~~g-~~~~~l~~~i~~  104 (106)
T 1xwb_A           82 K--NGVKVEEFAG-ANAKRLEDVIKA  104 (106)
T ss_dssp             E--TTEEEEEEES-CCHHHHHHHHHH
T ss_pred             c--CCcEEEEEcC-CCHHHHHHHHHH
Confidence            4  6999988999 678776666554

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.76  E-value=5.1e-08  Score=77.76  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ..|+.++..+..++.+|++||+++++||..|+.+...+   ..+.+-+ .++.|..++.+.  ...++..|++..+|+++
T Consensus         8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~   81 (118)
T 2f51_A            8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDK--NGNAADAYGVSSIPALF   81 (118)
T ss_dssp             ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred             ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCC--CHHHHHhcCCCCCCEEE
Confidence            46777777767777899999999999999999997655   3444444 578999887764  35688999999999999


Q ss_pred             EEeC--CCCeeEEEecCCCChHHHHHHHHHH
Q 021440          201 VIDP--ITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       201 IIdp--rTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +++.  ..|+.+..+.|..+ +++.+.+.++
T Consensus        82 ~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~  111 (118)
T 2f51_A           82 FVKKEGNEIKTLDQFVGADV-SRIKADIEKF  111 (118)
T ss_dssp             EEEEETTEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred             EEeCCCCcceEEEeecCCCH-HHHHHHHHHh
Confidence            9974  13788888999764 4455555544

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.76  E-value=1.9e-08  Score=77.96  Aligned_cols=87  Identities=14%  Similarity=0.133  Sum_probs=64.4

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      +++|.+||+++++||.+|+.+..      .+.++.++  ++.|..++.+..  ..++..|++..+|+++++.  .|+.+.
T Consensus        16 ~~~~~vlv~f~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~   85 (105)
T 4euy_A           16 EEQQLVLLFIKTENCGVCDVMLR------KVNYVLENYNYVEKIEILLQDM--QEIAGRYAVFTGPTVLLFY--NGKEIL   85 (105)
T ss_dssp             TCSSEEEEEEEESSCHHHHHHHH------HHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEE--TTEEEE
T ss_pred             hcCCCEEEEEeCCCCcchHHHHH------HHHHHHHHcCCceEEEEECCCC--HHHHHhcCCCCCCEEEEEe--CCeEEE
Confidence            57899999999999999999964      44555543  688888877643  4688999999999999996  699998


Q ss_pred             EecCCCChHHHHHHHHHHH
Q 021440          212 SWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       212 ~~~G~~~~~~fl~~L~~fl  230 (312)
                      .+.|..+.+++.+.|.+++
T Consensus        86 ~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           86 RESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEESSCCHHHHHHHHHTTC
T ss_pred             EEeCCcCHHHHHHHHHHhh
Confidence            9999999999888877654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.75  E-value=8.4e-08  Score=74.00  Aligned_cols=93  Identities=13%  Similarity=0.203  Sum_probs=75.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc------cEEEEEeccCChhHHHHHHhcCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTSEGWKVCSFYNMD  194 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~------nFIfwq~~~ds~EG~~~~~~Y~~~  194 (312)
                      -..+|++++.     +|.+||+++++||..|+.+.      +.+.++.++      ++.|..++.+.  ...++..|++.
T Consensus        11 ~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~   77 (111)
T 3uvt_A           11 TENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCTA--ERNICSKYSVR   77 (111)
T ss_dssp             CTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETTT--CHHHHHHTTCC
T ss_pred             ChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEeccc--cHhHHHhcCCC
Confidence            4567887775     78999999999999999995      556666654      57888887664  45689999999


Q ss_pred             CCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          195 SIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       195 ~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      .+|+++++.  .|+.+..+.|..+.+++.+.|.+
T Consensus        78 ~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l~~  109 (111)
T 3uvt_A           78 GYPTLLLFR--GGKKVSEHSGGRDLDSLHRFVLS  109 (111)
T ss_dssp             SSSEEEEEE--TTEEEEEECSCCSHHHHHHHHHH
T ss_pred             cccEEEEEe--CCcEEEeccCCcCHHHHHHHHHh
Confidence            999999994  59999899999999887776654

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.75  E-value=3.1e-08  Score=77.64  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      -..+|++++    +++|.+||+++++||..|+.+...+   ..+.+-.. ++.|+.++.+.  ...++..|++..+|+++
T Consensus        15 ~~~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~-~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A           15 SQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT-KMVFIKVDVDE--VSEVTEKENITSMPTFK   84 (112)
T ss_dssp             SHHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTT--THHHHHHTTCCSSSEEE
T ss_pred             CHHHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CCEEEEEECCC--CHHHHHHcCCCcccEEE
Confidence            345677766    3789999999999999999997554   23333322 58888887764  45788999999999988


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      |+.  .|+.+..+.|. +++++.+.|.+.
T Consensus        85 ~~~--~G~~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           85 VYK--NGSSVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEE--TTEEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEE--CCcEEEEEeCC-CHHHHHHHHHHh
Confidence            774  69999889998 888777666543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.74  E-value=1e-08  Score=80.72  Aligned_cols=91  Identities=19%  Similarity=0.155  Sum_probs=73.0

Q ss_pred             HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      .+.+.+|.+||+++++||..|+.+...+   +.+.+-++.++.|..++.+.  ...++..|++..+|+++|+.  .|+.+
T Consensus        25 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~--~g~~~   97 (121)
T 2i1u_A           25 DVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDT--NPETARNFQVVSIPTLILFK--DGQPV   97 (121)
T ss_dssp             HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEE
T ss_pred             HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCcCCEEEEEE--CCEEE
Confidence            3446789999999999999999997754   45555566678898887764  45688999999999998885  69998


Q ss_pred             EEecCCCChHHHHHHHHH
Q 021440          211 CSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       211 ~~~~G~~~~~~fl~~L~~  228 (312)
                      ..+.|..+.+++.+.|.+
T Consensus        98 ~~~~G~~~~~~l~~~l~~  115 (121)
T 2i1u_A           98 KRIVGAKGKAALLRELSD  115 (121)
T ss_dssp             EEEESCCCHHHHHHHTCS
T ss_pred             EEecCCCCHHHHHHHHHH
Confidence            889999888876665543

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.73  E-value=4.6e-08  Score=82.29  Aligned_cols=91  Identities=13%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEe
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSW  213 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~  213 (312)
                      +.+|.+||+++++||.+|+.+...+   +.+.+-+..++.|..++.+.  ...++..|++..+|++.++.  .|+.+..+
T Consensus        62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~--~G~~~~~~  134 (155)
T 2ppt_A           62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLAGQVRLAKIDTQA--HPAVAGRHRIQGIPAFILFH--KGRELARA  134 (155)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTT--STHHHHHTTCCSSSEEEEEE--TTEEEEEE
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHccCCEEEEEEeCCc--cHHHHHHcCCCcCCEEEEEe--CCeEEEEe
Confidence            7789999999999999999997654   45555566678899887764  34688999999999999994  69999999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 021440          214 CGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       214 ~G~~~~~~fl~~L~~fl~  231 (312)
                      .|..+.+++.+.|.+.+.
T Consensus       135 ~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          135 AGARPASELVGFVRGKLG  152 (155)
T ss_dssp             ESCCCHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHhc
Confidence            999999998888888764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.73  E-value=8.3e-08  Score=74.29  Aligned_cols=99  Identities=12%  Similarity=0.119  Sum_probs=73.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ...+|++++..  .++|.+||+++++||.+|+.+...+   ..+.+-. .++.|..++.+.  ...++..|++..+|++.
T Consensus         8 ~~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            8 SDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQ--CQGTAATNNISATPTFQ   79 (107)
T ss_dssp             SGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEE
T ss_pred             CHHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECcc--CHHHHHhcCCCcccEEE
Confidence            34567777654  5789999999999999999997543   2222222 368898887764  45688999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      ++.  .|+.+..+.|. .++++.+.|.+.+
T Consensus        80 ~~~--~G~~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           80 FFR--NKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             EEE--TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEE--CCeEEEEEeCC-CHHHHHHHHHHhc
Confidence            984  69999889995 4555666665544

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.73  E-value=6.1e-09  Score=83.12  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=82.2

Q ss_pred             cccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCC
Q 021440          118 HVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       118 ~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      .|--..+|++++..|+..+|++||+++++||..|+.+...      +.++.++  ++.|+.++.+.  ...++..|++..
T Consensus        18 ~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~------l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~   89 (130)
T 1wmj_A           18 ACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPV------FAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEA   89 (130)
T ss_dssp             CCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHH------HHHHHHHCTTBCCEECCTTT--SGGGHHHHTCCS
T ss_pred             EcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHH------HHHHHHHCCCCEEEEEeccc--hHHHHHHcCCCc
Confidence            3334567999999999999999999999999999999753      4455444  57787776653  456889999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +|+++|+  +.|+.+..+.| .+++++.+.|.+++..
T Consensus        90 ~Pt~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           90 MPTFLFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             SCCCCBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             cceEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence            9998877  36888888888 4788888888777654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.72  E-value=2.8e-08  Score=78.60  Aligned_cols=102  Identities=8%  Similarity=0.033  Sum_probs=78.9

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCC
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI  205 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdpr  205 (312)
                      ++......+.+|.+||+++++||..|+.+...+   ..+.+.+..++.|..++.+.  ...++..|++..+|++.+++. 
T Consensus        11 ~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~-   84 (122)
T 3aps_A           11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQA--YPQTCQKAGIKAYPSVKLYQY-   84 (122)
T ss_dssp             HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEEE-
T ss_pred             HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcC--CHHHHHHcCCCccceEEEEeC-
Confidence            344344557799999999999999999998654   45666666689999887765  346889999999999999985 


Q ss_pred             CCeeEEEecCC----CChHHHHHHHHHHHhhCC
Q 021440          206 TGQKICSWCGM----INPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       206 TGe~v~~~~G~----~~~~~fl~~L~~fl~~~~  234 (312)
                       |..+..+.|.    .+++++.+.|.+.+...+
T Consensus        85 -~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~  116 (122)
T 3aps_A           85 -ERAKKSIWEEQINSRDAKTIAALIYGKLETLQ  116 (122)
T ss_dssp             -EGGGTEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred             -CCccceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence             3335556665    799999999998887543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.71  E-value=7.4e-08  Score=75.91  Aligned_cols=94  Identities=18%  Similarity=0.276  Sum_probs=73.6

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      .+|++++..  ..+|+++|+++++||..|+.+..      .+.++.++ ++.|..++.+.  ...+++.|++..+|+++|
T Consensus        22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   91 (117)
T 2xc2_A           22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDK--LEETARKYNISAMPTFIA   91 (117)
T ss_dssp             THHHHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCc--cHHHHHHcCCCccceEEE
Confidence            667777653  47899999999999999999964      45555555 67888877654  457889999999999888


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +.  .|+.+..+.| .+++++.+.|.+.
T Consensus        92 ~~--~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           92 IK--NGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             Ee--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence            74  6999988999 5787776666654

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.70  E-value=8.4e-08  Score=84.03  Aligned_cols=111  Identities=12%  Similarity=0.155  Sum_probs=86.5

Q ss_pred             hcCCCcccc--ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHH
Q 021440          112 LYRPPFHVM--FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCS  189 (312)
Q Consensus       112 lfrPP~~l~--~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~  189 (312)
                      +|.+...+.  -..+|+.++    ..+|++||+++++||..|+.+...+   ..+.+-++.++.|..++.+.  ...++.
T Consensus        92 ~~~~~~~v~~l~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~--~~~l~~  162 (210)
T 3apq_A           92 IYDDDPEIITLERREFDAAV----NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGD--DRMLCR  162 (210)
T ss_dssp             TTTTCTTSEECCHHHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHH
T ss_pred             ccCCCCceEEecHHHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCc--cHHHHH
Confidence            444444442  234566655    6789999999999999999997644   45655666678999887764  457899


Q ss_pred             hcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          190 FYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       190 ~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      .|++..+|+++|+  ..|+.+..+.|..+.+++.+.|.+.+...
T Consensus       163 ~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~i~~~l~~~  204 (210)
T 3apq_A          163 MKGVNSYPSLFIF--RSGMAAVKYNGDRSKESLVAFAMQHVRST  204 (210)
T ss_dssp             HTTCCSSSEEEEE--CTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred             HcCCCcCCeEEEE--ECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence            9999999999999  46998888999999999999998887654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.70  E-value=6.5e-08  Score=78.91  Aligned_cols=100  Identities=15%  Similarity=0.233  Sum_probs=74.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|.+++.   +.++ +||+++++||..|+.+...+   ..+.+-+..++.|+.++.+.  ...++..|++..+|+++|
T Consensus        40 ~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~  110 (140)
T 1v98_A           40 EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDE--HPGLAARYGVRSVPTLVL  110 (140)
T ss_dssp             ------------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCC--CHHHHHHCCCCccCEEEE
Confidence            344554443   4456 99999999999999998654   45555556679999887765  457889999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +.  .|+.+..+.|..+.++|.+.|.+.++.
T Consensus       111 ~~--~G~~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          111 FR--RGAPVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             Ee--CCcEEEEEeCCCCHHHHHHHHHHHHcc
Confidence            94  699998999999999998888887753

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.70  E-value=8e-08  Score=76.25  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=68.2

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      .+.++.+.+++|.+||+++++||..|+.+...      +.++.++  ++.|..++.+.  ...++..|++..+|+++|+ 
T Consensus        20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~------l~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~-   90 (114)
T 2oe3_A           20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQPH------LTKLIQAYPDVRFVKCDVDE--SPDIAKECEVTAMPTFVLG-   90 (114)
T ss_dssp             HHHHHHHHHHCSEEEEEEECTTCHHHHHTHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSBSEEEEE-
T ss_pred             HHHHHHHHhCCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCCEEEEEECCC--CHHHHHHCCCCcccEEEEE-
Confidence            34444556689999999999999999999754      3444332  37788887664  4568899999999998876 


Q ss_pred             CCCCeeEEEecCCCChHHHHHHHH
Q 021440          204 PITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       204 prTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                       +.|+.+..+.|.. ++++.+.|.
T Consensus        91 -~~G~~~~~~~G~~-~~~l~~~l~  112 (114)
T 2oe3_A           91 -KDGQLIGKIIGAN-PTALEKGIK  112 (114)
T ss_dssp             -ETTEEEEEEESSC-HHHHHHHHH
T ss_pred             -eCCeEEEEEeCCC-HHHHHHHHH
Confidence             3699998899987 666555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.69  E-value=7.5e-08  Score=87.66  Aligned_cols=102  Identities=15%  Similarity=0.212  Sum_probs=81.3

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      +-..+|++.+  ....+|++||+|+.+||.+|+.+...+   +.+.+-...+++|..++.+.  ...++..|++..+|++
T Consensus        12 ~~~~~f~~~~--~~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A           12 INESNLQQVL--EQSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             CCTTTHHHHH--TTTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCSSSEE
T ss_pred             CCHHHHHHHH--HhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCCCCeE
Confidence            3456788855  334589999999999999999997544   45555555679999998774  4578999999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      .++.  .|+.+..+.|..+.+.+...|...+
T Consensus        85 ~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           85 YLFQ--NGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            9994  6999999999998888877777665

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.68  E-value=7.2e-08  Score=78.92  Aligned_cols=96  Identities=13%  Similarity=0.098  Sum_probs=74.5

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCChh--------------------HHHHHHhcC
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSE--------------------GWKVCSFYN  192 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~E--------------------G~~~~~~Y~  192 (312)
                      -++|++||++.++||..|+.+...+   ..+.+-+ ..++.|+.++.+...                    ...++..|.
T Consensus        24 ~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (151)
T 2f9s_A           24 LKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD  100 (151)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTT
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcC
Confidence            4689999999999999999886543   2233333 336777777776532                    346788899


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +..+|++.|||+ .|+.+..+.|..+++++.+.|...+...
T Consensus       101 v~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~~  140 (151)
T 2f9s_A          101 VSPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPGE  140 (151)
T ss_dssp             CCSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred             CCCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence            999999999997 6999999999999999999998887654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.67  E-value=9.7e-08  Score=76.20  Aligned_cols=96  Identities=18%  Similarity=0.241  Sum_probs=73.9

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      .+|++++    +.+|.+||+++++||..|+.+...+   ..+.+-+.. ++.|+.++.+.  ...++..|++..+|++++
T Consensus        24 ~~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~   94 (121)
T 2j23_A           24 DQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDE--QSQIAQEVGIRAMPTFVF   94 (121)
T ss_dssp             HHHHHHH----SSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTT--CHHHHHHHTCCSSSEEEE
T ss_pred             HHHHHHH----cCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcC--CHHHHHHcCCCcccEEEE
Confidence            3455544    7899999999999999999997654   333333333 38888887765  456889999999999998


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +.  .|+.+..+.|. +++++.+.|.+.+
T Consensus        95 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           95 FK--NGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EE--TTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EE--CCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            85  69999889998 8888777776654

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.67  E-value=1.3e-07  Score=78.69  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=76.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..+|++++..+  .+|++||+++.+||.+|+.+...      +.++.++  ++.|..++.+.  ...++..|++..+|++
T Consensus        20 ~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~   89 (153)
T 2wz9_A           20 AGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNEV------MAELAKELPQVSFVKLEAEG--VPEVSEKYEISSVPTF   89 (153)
T ss_dssp             HHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHHH------HHHHHHHcCCeEEEEEECCC--CHHHHHHcCCCCCCEE
Confidence            34566665433  48999999999999999999654      4444443  68899887765  4568899999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +|++  .|+.+..+.|. +++++.+.|.+.+...
T Consensus        90 ~~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~~  120 (153)
T 2wz9_A           90 LFFK--NSQKIDRLDGA-HAPELTKKVQRHASSG  120 (153)
T ss_dssp             EEEE--TTEEEEEEESS-CHHHHHHHHHHHSCTT
T ss_pred             EEEE--CCEEEEEEeCC-CHHHHHHHHHHHhccc
Confidence            9999  59998888995 7777777777776543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.67  E-value=1.2e-07  Score=77.36  Aligned_cols=98  Identities=11%  Similarity=0.107  Sum_probs=76.4

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhH---------------------HHHHHhcC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEG---------------------WKVCSFYN  192 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG---------------------~~~~~~Y~  192 (312)
                      .+|++||++.++||..|+.+...+   ..+.+-+. .++.|+.++.+....                     ..++..|.
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL  105 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC
Confidence            589999999999999999876443   12233232 358888888776431                     26778899


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      +..+|++.|||+ .|+.+..+.|..+++++.+.|...+..+...
T Consensus       106 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~~  148 (152)
T 2lja_A          106 INGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNELLGLEGHH  148 (152)
T ss_dssp             CCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHHHTCCSSS
T ss_pred             cCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHHhcccccc
Confidence            999999999997 5999988899889999999999888776544

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.66  E-value=6.6e-08  Score=79.44  Aligned_cols=98  Identities=16%  Similarity=0.047  Sum_probs=75.4

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh----hccEEEEEeccCChh----------------------HH
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII----SVNFIFWQEYDDTSE----------------------GW  185 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i----~~nFIfwq~~~ds~E----------------------G~  185 (312)
                      +.-++|++||++..+||.+|+.+-.      .+.++.    ..++.++.++.|+.+                      ..
T Consensus        20 ~~~~gk~vlv~F~a~wC~~C~~~~~------~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (151)
T 3raz_A           20 QSLKAPVRIVNLWATWCGPCRKEMP------AMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSR   93 (151)
T ss_dssp             GGCCSSEEEEEEECTTCHHHHHHHH------HHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHH
T ss_pred             HHhCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchH
Confidence            3347899999999999999998854      344443    346888888887533                      44


Q ss_pred             HHHHhcC--CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440          186 KVCSFYN--MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       186 ~~~~~Y~--~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      .++..|.  +..+|++.|||+ .|+.+..+.|..+++++.+.|.+.....+..
T Consensus        94 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~~~~  145 (151)
T 3raz_A           94 NFMKTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKCREG  145 (151)
T ss_dssp             HHHHTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC----
T ss_pred             HHHHHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence            5677788  889999999997 6999999999999999999998887765543

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.66  E-value=7.9e-08  Score=76.17  Aligned_cols=90  Identities=13%  Similarity=0.061  Sum_probs=70.3

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCC---------------------hhHHHHHHh
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDT---------------------SEGWKVCSF  190 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds---------------------~EG~~~~~~  190 (312)
                      -.+|++||++.++||..|+.+..      .+.++.++  ++.|+.++.+.                     .....++..
T Consensus        23 ~~~k~~ll~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   96 (136)
T 1zzo_A           23 LLGKPAVLWFWAPWCPTCQGEAP------VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN   96 (136)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred             hCCCeEEEEEEcCCChhHHHHHH------HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence            36899999999999999999854      33444333  67777777654                     223467788


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      |.+..+|++.|||+ .|+.+ .+.|..+.+++.+.|.+.+.
T Consensus        97 ~~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           97 FGVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             TTCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             cCCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            99999999999997 68888 89999999999888887764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.65  E-value=6.4e-08  Score=85.75  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++   .+.+|.+||+++++||.+|+.+...+   +.+.+.++.++.|..++.+.  ...++..|++..+|+++|
T Consensus        19 ~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~   90 (222)
T 3dxb_A           19 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLL   90 (222)
T ss_dssp             TTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CTTTGGGGTCCSBSEEEE
T ss_pred             HHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCC--CHHHHHHcCCCcCCEEEE
Confidence            44566544   45799999999999999999997654   55666666678888887765  345788999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~  235 (312)
                      ++  .|+.+..+.|..+.+++.+.|.+.+.....
T Consensus        91 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~  122 (222)
T 3dxb_A           91 FK--NGEVAATKVGALSKGQLKEFLDANLAGSAM  122 (222)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHSCCSCC
T ss_pred             EE--CCeEEEEeccccChHHHHHHHHhhcccccc
Confidence            96  599998999999999999999998865443

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.65  E-value=8.1e-08  Score=80.33  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=76.4

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      +|++++.  ..++|++||+++.+||.+|+.+...+   ..+.+-++.++.|+.++.+.  ...++..|++..+|+++|..
T Consensus        13 ~~~~~i~--~~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~   85 (149)
T 3gix_A           13 EVDQAIK--STAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFF   85 (149)
T ss_dssp             HHHHHHH--HCCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCSSSEEEEEE
T ss_pred             HHHHHHH--hcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCc--CHHHHHHcCCCccCeEEEEE
Confidence            4555543  25789999999999999999996433   22333334459999988754  45689999999999999544


Q ss_pred             CCCCeeE---------EEecC-CCChHHHHHHHHHHHhh
Q 021440          204 PITGQKI---------CSWCG-MINPQPLGEMLLPFMDR  232 (312)
Q Consensus       204 prTGe~v---------~~~~G-~~~~~~fl~~L~~fl~~  232 (312)
                        .|+.+         ..+.| ..+.++|.+.|.+.+..
T Consensus        86 --~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~  122 (149)
T 3gix_A           86 --NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG  122 (149)
T ss_dssp             --TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHH
T ss_pred             --CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHH
Confidence              59988         77889 88999999999888754

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.64  E-value=2.5e-07  Score=70.43  Aligned_cols=94  Identities=15%  Similarity=0.233  Sum_probs=71.8

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      .+|++++..  ..+|.++|+++++||..|+.+...      +.++.++  ++.|+.++.+.  ...++..|++..+|+++
T Consensus         8 ~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~   77 (104)
T 2vim_A            8 ADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPK------VEALAKEIPEVEFAKVDVDQ--NEEAAAKYSVTAMPTFV   77 (104)
T ss_dssp             HHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred             HHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHH------HHHHHHHCCCCEEEEEeccC--CHHHHHHcCCccccEEE
Confidence            345555532  378999999999999999999754      3444433  68888887764  45688999999999988


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      ++.  .|+.+..+.| .+++++.+.|.++
T Consensus        78 ~~~--~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           78 FIK--DGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             EEe--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence            886  6999988999 5888777766654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.63  E-value=7.3e-08  Score=77.37  Aligned_cols=88  Identities=9%  Similarity=0.023  Sum_probs=68.8

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCCh-----------------------hHHHHHHh
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTS-----------------------EGWKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~-----------------------EG~~~~~~  190 (312)
                      .+|++||++.++||..|+.+...+   ..+.+-+. .++.|+.++.+..                       ....++..
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE  109 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence            789999999999999999986543   22333333 4677888877642                       23467889


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      |++..+|++.|||+ .|+.+..+.|..+.+++.+.|
T Consensus       110 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          110 YHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             TTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred             cCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence            99999999999997 699999999999998877655

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.62  E-value=1.4e-07  Score=74.29  Aligned_cols=91  Identities=14%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--------------------------hhHHHH
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--------------------------SEGWKV  187 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--------------------------~EG~~~  187 (312)
                      -++|++||++.++||..|+.+-..+   ..+.+-.+.++.++.++.+.                          .....+
T Consensus        20 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   96 (138)
T 4evm_A           20 YKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL   96 (138)
T ss_dssp             GTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence            4689999999999999999886554   33333344577777773211                          123357


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      +..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+
T Consensus        97 ~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           97 LETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             HHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence            88999999999999997 69999999999999888877764

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.61  E-value=1.1e-07  Score=74.57  Aligned_cols=96  Identities=8%  Similarity=0.111  Sum_probs=72.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      -..+| +++    .++|.+||+++++||..|+.+..      .+.++.++  ++.|..++.+  +...++..|++..+|+
T Consensus         9 ~~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~~------~l~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt   75 (110)
T 2l6c_A            9 TEAGM-AHF----EGLSDAIVFFHKNLCPHCKNMEK------VLDKFGARAPQVAISSVDSE--ARPELMKELGFERVPT   75 (110)
T ss_dssp             GGCSH-HHH----TTCSEEEEEEECSSCSTHHHHHH------HHHHHHTTCTTSCEEEEEGG--GCHHHHHHTTCCSSCE
T ss_pred             CHHHH-HHH----HcCCCEEEEEECCCCHhHHHHHH------HHHHHHHHCCCcEEEEEcCc--CCHHHHHHcCCcccCE
Confidence            34556 443    46799999999999999999954      34444443  4667776554  4567889999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ++|+.  .|+.+..+.|..++++|.+.|..+..
T Consensus        76 ~~~~~--~G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           76 LVFIR--DGKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             EEEEE--SSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             EEEEE--CCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence            99993  69999999999999987777766544

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.61  E-value=1.2e-07  Score=75.46  Aligned_cols=90  Identities=12%  Similarity=0.022  Sum_probs=69.9

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCCh--------------------hHHHHHHh
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTS--------------------EGWKVCSF  190 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~--------------------EG~~~~~~  190 (312)
                      .-++|++||++.++||..|+.+...      +.++.++  ++.|+.++.+..                    ....+++.
T Consensus        21 ~~~~k~~lv~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   94 (136)
T 1lu4_A           21 SLQGKPAVLWFWTPWCPFCNAEAPS------LSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWAR   94 (136)
T ss_dssp             GGTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHH
T ss_pred             HhCCCEEEEEEECCcChhHHHHHHH------HHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHh
Confidence            3468999999999999999998643      3444433  677787777652                    13467788


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEec---CCCChHHHHHHHHHHH
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWC---GMINPQPLGEMLLPFM  230 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~---G~~~~~~fl~~L~~fl  230 (312)
                      |++..+|++.|||+ .|+.+ .+.   |..+++++.+.|.+.+
T Consensus        95 ~~i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           95 YNVPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             TTCCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             cCCCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            99999999999997 68888 888   9999998888887654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.60  E-value=1.3e-07  Score=80.54  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=77.0

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hh--------------------HHHHHHh
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SE--------------------GWKVCSF  190 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~E--------------------G~~~~~~  190 (312)
                      +.-.+|++||++..+||..|+..-      +.+.++.++++.++.++.+. .+                    ...++..
T Consensus        54 ~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (176)
T 3kh7_A           54 ADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLD  127 (176)
T ss_dssp             GGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHH
T ss_pred             HHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHH
Confidence            344589999999999999999884      66788888788888887432 21                    2356678


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      |.+..+|++.|||+ .|+.+..+.|..+++++.+.|.+.|+.-
T Consensus       128 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~l  169 (176)
T 3kh7_A          128 LGVYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQL  169 (176)
T ss_dssp             HTCCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             cCCCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            88899999999997 6999999999999999999999888753

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.60  E-value=7.7e-08  Score=78.53  Aligned_cols=98  Identities=9%  Similarity=0.073  Sum_probs=72.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..|++++.  ...+|++||+++++||.+|+.+..      .+.++.++ +++|+.++.+.  ...++..|++..+|+++|
T Consensus        29 ~~~~~~l~--~~~~k~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~   98 (133)
T 3cxg_A           29 GSLNQVFS--STQNSSIVIKFGAVWCKPCNKIKE------YFKNQLNYYYVTLVDIDVDI--HPKLNDQHNIKALPTFEF   98 (133)
T ss_dssp             THHHHHHT--C-CCSEEEEEEECTTCHHHHHTHH------HHHGGGGTEECEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             hHHHHHHH--hcCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCEEEEEEeccc--hHHHHHhcCCCCCCEEEE
Confidence            45666553  334799999999999999999853      34444443 46788776654  467889999999999999


Q ss_pred             EeCCCCe--eEEEecCCCChHHHHHHHHHHHh
Q 021440          202 IDPITGQ--KICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       202 IdprTGe--~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +....|+  .+..+.|. +++++.+.|.+++.
T Consensus        99 ~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           99 YFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            9312466  77888998 88888888877664

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.59  E-value=1.2e-07  Score=79.12  Aligned_cols=91  Identities=16%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC---------------------hhHHHHHHhcCC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT---------------------SEGWKVCSFYNM  193 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds---------------------~EG~~~~~~Y~~  193 (312)
                      .+|++||++.++||..|+.+.      +.+.++.++++.++.++.+.                     .+...++..|++
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  123 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  123 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTC
T ss_pred             CCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCc
Confidence            679999999999999999885      45677777777777776432                     123357778899


Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      ..+|++.|||+ .|+.+..+.|..+++.+.+.|.+.+++
T Consensus       124 ~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  161 (168)
T 2b1k_A          124 YGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEK  161 (168)
T ss_dssp             CSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred             cccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            99999999997 699998999999999998888887754

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.59  E-value=3.2e-07  Score=73.46  Aligned_cols=98  Identities=11%  Similarity=0.034  Sum_probs=71.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-----hccEEEEEeccCChhHHHHHHhcCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-----SVNFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-----~~nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      -..+|++.+.   +.+|++||+++++||.+|+.|...+   ..+.+.+     +.+++|..++.+.  ...++..|++..
T Consensus        21 ~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~   92 (127)
T 3h79_A           21 TDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRLW---DDLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRVSG   92 (127)
T ss_dssp             CTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTCCS
T ss_pred             ChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHHH---HHHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCCcc
Confidence            3456777654   4689999999999999999996522   1222221     2468999887764  567899999999


Q ss_pred             CCeEEEEeCCCCeeE--EEecCCCChHHHHHHHHH
Q 021440          196 IPAVLVIDPITGQKI--CSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       196 ~P~i~IIdprTGe~v--~~~~G~~~~~~fl~~L~~  228 (312)
                      ||++.++.+  |..+  ..+.|..+.+.+++.|.+
T Consensus        93 ~Pt~~~~~~--g~~~~~~~~~G~~~~~~l~~~i~~  125 (127)
T 3h79_A           93 FPTMRYYTR--IDKQEPFEYSGQRYLSLVDSFVFQ  125 (127)
T ss_dssp             SSEEEEECS--SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred             CCEEEEEeC--CCCCCceEecCCccHHHHHHHHHh
Confidence            999999985  4332  468898888877665544

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.59  E-value=3.7e-07  Score=72.03  Aligned_cols=87  Identities=13%  Similarity=0.150  Sum_probs=64.9

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCC--hhHHHHHHhcCCCCCCeEEEEeCCC
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDT--SEGWKVCSFYNMDSIPAVLVIDPIT  206 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds--~EG~~~~~~Y~~~~~P~i~IIdprT  206 (312)
                      +.+.+|.+||+++++||.+|+.+...      +.++.+   ..+++..++...  .+...++..|++..+|+++++.  .
T Consensus        25 ~~~~~~~~~v~f~a~wC~~C~~~~p~------l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~--~   96 (118)
T 1zma_A           25 ALDKKETATFFIGRKTCPYCRKFAGT------LSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT--D   96 (118)
T ss_dssp             HHHTTCCEEEEEECTTCHHHHHHHHH------HHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE--T
T ss_pred             HHhCCCeEEEEEECCCCccHHHHHHH------HHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEE--C
Confidence            34568999999999999999999643      444443   345555443222  3445788999999999999996  5


Q ss_pred             CeeEEEecCCCChHHHHHHH
Q 021440          207 GQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       207 Ge~v~~~~G~~~~~~fl~~L  226 (312)
                      |+.+..+.|..+++++.+.|
T Consensus        97 G~~~~~~~G~~~~~~l~~~l  116 (118)
T 1zma_A           97 GQINVRCDSSMSAQEIKDFA  116 (118)
T ss_dssp             TEEEEECCTTCCHHHHHHHH
T ss_pred             CEEEEEecCCCCHHHHHHHh
Confidence            99888899998888766554

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.59  E-value=2.1e-07  Score=75.13  Aligned_cols=90  Identities=16%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-h-ccEEEEEeccCChh-----------------------HHHHHH
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-S-VNFIFWQEYDDTSE-----------------------GWKVCS  189 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~-~nFIfwq~~~ds~E-----------------------G~~~~~  189 (312)
                      .+|++||++.++||..|+.+...+   ..+.+-+ . .++.|+.++.+...                       ...++.
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK  108 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence            689999999999999999986543   2233333 2 24888888888654                       557889


Q ss_pred             hcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          190 FYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       190 ~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      .|++..+|++.|||+ .|+.+..+.   +.+++.+.|.+.|.
T Consensus       109 ~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          109 QYAILTLPTNILLSP-TGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             HTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             hcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHHHHHc
Confidence            999999999999997 688876654   78888888887764

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.58  E-value=7.4e-08  Score=79.31  Aligned_cols=97  Identities=13%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             HHHHHHcCCeEEEEeecCCCcccch-hhcccCCCHHHHHHhh----ccEEEEEeccC-------Chh-------------
Q 021440          129 KDAALAQDKWLLVNLQSTKEFSSLM-LNRDTWGNEAVSQIIS----VNFIFWQEYDD-------TSE-------------  183 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~~~~f~c~~-lnRDvw~~~~V~~~i~----~nFIfwq~~~d-------s~E-------------  183 (312)
                      ...+.-++|++||++..+||.+|.. +-      +.+.++.+    .++.|+.++.+       +.+             
T Consensus        23 ~~l~~~~gk~vlv~F~a~~C~~C~~e~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (160)
T 3lor_A           23 LSNEDLRGKVVVVEVFQMLCPGCVNHGV------PQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKF   96 (160)
T ss_dssp             CCHHHHTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCS
T ss_pred             cCHHHhCCCEEEEEEEcCCCcchhhhhh------HHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCC
Confidence            3345557999999999999999987 33      23333332    34777777652       111             


Q ss_pred             ------HH------HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          184 ------GW------KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       184 ------G~------~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                            ..      .++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.|.+
T Consensus        97 ~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A           97 PVAVDMPREGQRIPSTMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             CEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             cEEECCccccchhhhHHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                  11      2778899999999999997 699999999999999999999998865

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.57  E-value=1.8e-07  Score=76.45  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=72.4

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCCh---------------------hHHHHHHhc
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTS---------------------EGWKVCSFY  191 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~---------------------EG~~~~~~Y  191 (312)
                      -.+|++||++.++||..|+.+.      +.+.++.++ ++.|+.++.+..                     +...+++.|
T Consensus        40 ~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (156)
T 1kng_A           40 FKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEW  113 (156)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHT
T ss_pred             hCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhc
Confidence            3489999999999999999875      455666554 377777765432                     233577789


Q ss_pred             CCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       192 ~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      ++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+++
T Consensus       114 ~v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  153 (156)
T 1kng_A          114 GVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQMEK  153 (156)
T ss_dssp             TCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             CcCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            9999999999997 699998999999999998888887754

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.57  E-value=1.4e-07  Score=76.05  Aligned_cols=93  Identities=10%  Similarity=0.026  Sum_probs=71.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCChhH----------HH-------------HHHh
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEG----------WK-------------VCSF  190 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~EG----------~~-------------~~~~  190 (312)
                      .+|++||++.++||..|+.+...+-   .+.+-+ ..++.|+.++.+....          ..             ++..
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKIT  106 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence            6799999999999999999865431   133333 3358888888774322          11             7788


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      |.+..+|++.|||+ .|+.+..+.|..+.+++++.|.+.+.
T Consensus       107 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~  146 (148)
T 3hcz_A          107 YDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK  146 (148)
T ss_dssp             HCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred             cCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence            99999999999997 69999999888888888888877664

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.57  E-value=1.6e-07  Score=80.75  Aligned_cols=100  Identities=6%  Similarity=0.064  Sum_probs=79.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      .-+|++++..  +.+|+++|+|..+||.+|++|.      |-+.++-.+   ..+|+.+|+|.  ...++..|.+.+.|+
T Consensus        29 ~~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~------PvleelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT   98 (160)
T 2av4_A           29 GWAVDQAIVN--EDERLVCIRFGHDYDPDCMKMD------ELLYKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVS   98 (160)
T ss_dssp             HHHHHHHHHH--CSSSEEEEEEECTTSHHHHHHH------HHHHHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEE
T ss_pred             HHHHHHHHHh--cCCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCE
Confidence            3457777632  5789999999999999999995      445555443   48899998874  456899999999999


Q ss_pred             EEEEeCCCCeeE--E-------EecCCCC-hHHHHHHHHHHHhhC
Q 021440          199 VLVIDPITGQKI--C-------SWCGMIN-PQPLGEMLLPFMDRS  233 (312)
Q Consensus       199 i~IIdprTGe~v--~-------~~~G~~~-~~~fl~~L~~fl~~~  233 (312)
                      ++++-  .|+.+  .       ++.|..+ .++|++.|..++...
T Consensus        99 ~~fFk--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a  141 (160)
T 2av4_A           99 VMFFY--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA  141 (160)
T ss_dssp             EEEEE--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEE--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence            98886  48877  4       6889876 899999999888653

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.57  E-value=7e-08  Score=75.17  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      -..+|++++    +++|++||+++++||..|+.+...+   ..+.+-++   .+++|..++.+.  ...++..|++..+|
T Consensus        13 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P   83 (120)
T 1mek_A           13 RKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYP   83 (120)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSS
T ss_pred             chhhHHHHH----ccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCC--CHHHHHHCCCCccc
Confidence            456677765    3689999999999999999997543   22333332   357888776654  34688899999999


Q ss_pred             eEEEEeCCCCeeE--EEecCCCChHHHHHHHHHH
Q 021440          198 AVLVIDPITGQKI--CSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       198 ~i~IIdprTGe~v--~~~~G~~~~~~fl~~L~~f  229 (312)
                      ++.++.  .|+.+  ..+.|..+.+++.+.|.+.
T Consensus        84 t~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~~  115 (120)
T 1mek_A           84 TIKFFR--NGDTASPKEYTAGREADDIVNWLKKR  115 (120)
T ss_dssp             EEEEEE--SSCSSSCEECCCCSSHHHHHHHHHTT
T ss_pred             EEEEEe--CCCcCCcccccCccCHHHHHHHHHhc
Confidence            999994  58876  7789988888876666543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.56  E-value=2e-07  Score=76.02  Aligned_cols=101  Identities=8%  Similarity=-0.087  Sum_probs=75.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EEEEEeccCC-------hhHHHHHHhcCC
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FIFWQEYDDT-------SEGWKVCSFYNM  193 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FIfwq~~~ds-------~EG~~~~~~Y~~  193 (312)
                      ..+|++++..      ++||+++++||.+|+.+.      +.+.++.++. +.|..++.+.       .+...++..|++
T Consensus        23 ~~~~~~~~~~------~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v   90 (135)
T 3emx_A           23 PEEFRQLLQG------DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGV   90 (135)
T ss_dssp             HHHHHHHHTS------SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCC------cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence            3445555432      999999999999999995      5566666653 6677777644       467788999999


Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCCC
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      ..+|+++|++  .|+.+..+.|..+.+.+.+.+.+.++....+
T Consensus        91 ~~~Pt~~~~~--~G~~v~~~~G~~~~~~~~~~i~~~~~~~~~~  131 (135)
T 3emx_A           91 EGTPTLVFYK--EGRIVDKLVGATPWSLKVEKAREIYGGEGHH  131 (135)
T ss_dssp             CSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHC------
T ss_pred             ceeCeEEEEc--CCEEEEEEeCCCCHHHHHHHHHHHhCCCccc
Confidence            9999999998  5999999999999988888888877665443

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.55  E-value=4.3e-07  Score=77.03  Aligned_cols=94  Identities=10%  Similarity=0.109  Sum_probs=70.1

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccE------EEEEeccCC--h-hHHHHHHh--------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNF------IFWQEYDDT--S-EGWKVCSF--------------  190 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nF------Ifwq~~~ds--~-EG~~~~~~--------------  190 (312)
                      ++||+||++..+||..|+.+...+   ..+.+-++ .++      .|+.++.+.  . ...+++..              
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~  134 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFM  134 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcch
Confidence            579999999999999999886543   22333333 336      788887776  2 23345443              


Q ss_pred             -------cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          191 -------YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       191 -------Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                             |++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+.+
T Consensus       135 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          135 TAASLGGVPASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVDE  182 (183)
T ss_dssp             GGGGTTTCCTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred             HHHHhccCCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence                   35678999999997 699999999999999999999988764

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.55  E-value=4.2e-07  Score=74.89  Aligned_cols=98  Identities=15%  Similarity=0.082  Sum_probs=71.9

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCCh--hHHHHHHhc-------------------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTS--EGWKVCSFY-------------------  191 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~--EG~~~~~~Y-------------------  191 (312)
                      -++|++||++.++||..|+.+...+   ..+.+-++ .++.|+.++.+..  ...+++..+                   
T Consensus        32 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (165)
T 3or5_A           32 LKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNG  108 (165)
T ss_dssp             GTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHT
T ss_pred             cCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhh
Confidence            3679999999999999999986554   22333333 3588888877652  233443332                   


Q ss_pred             ----CCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021440          192 ----NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       192 ----~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~~  235 (312)
                          .+..+|++.|||+ .|+.+..+.|..+++++.+.|.+.|.+...
T Consensus       109 ~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~  155 (165)
T 3or5_A          109 YIDGGITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAKAA  155 (165)
T ss_dssp             TSTTCSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred             hhccCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence                6889999999997 699999999999999999999999876543

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.55  E-value=5.5e-08  Score=78.46  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCc--------------ccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHH
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEF--------------SSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKV  187 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f--------------~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~  187 (312)
                      ..+|+++.   .+.+|.+||+++++||.              +|+.+...+   +.+.+-+..++.|..++.+..  ..+
T Consensus        10 ~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~---~~l~~~~~~~~~~~~vd~d~~--~~l   81 (123)
T 1oaz_A           10 DDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGT   81 (123)
T ss_dssp             STTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHH---TTC-------CEEEEEETTSC--TTT
T ss_pred             hhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHH---HHHHHHhcCCeEEEEEECCCC--HHH
Confidence            34565443   46799999999999999              777776532   223333445788998887753  468


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      +..|++..+|+++++ + .|+.+..+.|..+++++.+.|.+
T Consensus        82 ~~~~~v~~~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~  120 (123)
T 1oaz_A           82 APKYGIRGIPTLLLF-K-NGEVAATKVGALSKGQLKEFLDA  120 (123)
T ss_dssp             GGGGTCCBSSEEEEE-E-SSSEEEEEESCCCHHHHHHHHTT
T ss_pred             HHHcCCCccCEEEEE-E-CCEEEEEEeCCCCHHHHHHHHHH
Confidence            889999999999999 3 69999889999988887766654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.55  E-value=3.8e-07  Score=75.56  Aligned_cols=91  Identities=5%  Similarity=0.063  Sum_probs=72.1

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE---
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC---  211 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~---  211 (312)
                      .+|++||+++.+||.+|+.+...+   +++.+-...++.|..++.+..  ..++..|++..+|++.++.  .|+.+.   
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~i~~~Pt~~~~~--~G~~v~~~~   94 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEV--PDFNKMYELYDPCTVMFFF--RNKHIMIDL   94 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTC--CTTTTSSCSCSSCEEEEEE--TTEEEEEEC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccC--HHHHHHcCCCCCCEEEEEE--CCcEEEEec
Confidence            689999999999999999997654   344444556799999987743  4578899999999999996  488776   


Q ss_pred             ------EecCCCC-hHHHHHHHHHHHhh
Q 021440          212 ------SWCGMIN-PQPLGEMLLPFMDR  232 (312)
Q Consensus       212 ------~~~G~~~-~~~fl~~L~~fl~~  232 (312)
                            .+.|.++ .++|++.|.+.+..
T Consensus        95 g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           95 GTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             C------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence                  3556664 88999999888865

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.95  E-value=8.8e-09  Score=78.44  Aligned_cols=93  Identities=20%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK  209 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~  209 (312)
                      ..+.+.+|+++|+++++||..|+.+.+.+   ..+.+.+..++.|..++.+  +...++..|++..+|++.++  +.|+.
T Consensus        13 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~~Pt~~~~--~~g~~   85 (106)
T 2yj7_A           13 QEVLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYEGKVKVVKVNVD--ENPNTAAQYGIRSIPTLLLF--KNGQV   85 (106)
Confidence            33457789999999999999999997654   4455555557778877655  45578899999999999999  36888


Q ss_pred             EEEecCCCChHHHHHHHHHH
Q 021440          210 ICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       210 v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +..+.|..+.+++.+.|.+.
T Consensus        86 ~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           86 VDRLVGAQPKEALKERIDKH  105 (106)
Confidence            88889988888777766554

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.54  E-value=4.5e-07  Score=71.90  Aligned_cols=97  Identities=12%  Similarity=0.099  Sum_probs=72.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      -..+|++.+..  ..+|.++|+++++||.+|+.+...      +.++.++  ++.|..++.+. +...++..|++..+|+
T Consensus        24 ~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~~Pt   94 (124)
T 1faa_A           24 NKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPT   94 (124)
T ss_dssp             CTTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSE
T ss_pred             cchhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCeeeE
Confidence            35567776653  478999999999999999999754      3444433  47888887653 3467889999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      ++|+.  .|+.+..+.|.. ++++.+.|.+.
T Consensus        95 ~~~~~--~G~~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           95 FKILK--ENSVVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             EEEEE--TTEEEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEEe--CCcEEEEEcCCC-HHHHHHHHHHh
Confidence            76653  699988889975 77777666654

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.53  E-value=2.8e-07  Score=71.69  Aligned_cols=97  Identities=14%  Similarity=0.096  Sum_probs=71.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..+|++++..  ..+|.+||+++++||..|+.+...      +.++.++  ++.|..++.+. +...++..|++..+|++
T Consensus        12 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~------l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~   82 (111)
T 2pu9_C           12 KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF   82 (111)
T ss_dssp             TTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSBSSEE
T ss_pred             hHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHH------HHHHHHHCCCeEEEEEecCc-chHHHHHHcCCCeeeEE
Confidence            4567776642  258999999999999999999754      3444332  48888887763 34578899999999995


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      + +++ .|+.+..+.|. .++++.+.|.+++
T Consensus        83 ~-~~~-~G~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           83 K-ILK-ENSVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             E-EES-SSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred             E-EEe-CCcEEEEEcCC-CHHHHHHHHHHhh
Confidence            4 554 69988888997 4777777776654

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.52  E-value=3.9e-07  Score=74.30  Aligned_cols=98  Identities=13%  Similarity=0.033  Sum_probs=74.3

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccC--Ch-------------------hHHHHHHh
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDD--TS-------------------EGWKVCSF  190 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~d--s~-------------------EG~~~~~~  190 (312)
                      .-++|++||++.++||..|+.+...+   ..+.+-+. .++.++.++.+  +.                   ....++..
T Consensus        25 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  101 (153)
T 2l5o_A           25 DLQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQA  101 (153)
T ss_dssp             HHTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHH
T ss_pred             HhCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHH
Confidence            34789999999999999999886543   12333333 35777666532  21                   23467888


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      |.+..+|++.|||+ .|+.+..+.|..+++++.+.|.+.|....
T Consensus       102 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~~  144 (153)
T 2l5o_A          102 FGTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNSD  144 (153)
T ss_dssp             HTCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred             cCCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999997 69988889999999999999999987654

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.50  E-value=9.5e-08  Score=78.95  Aligned_cols=97  Identities=15%  Similarity=0.050  Sum_probs=68.4

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhccc-------------------------CCCHHHHHHhhc-cEEEEEeccCChhHH
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDT-------------------------WGNEAVSQIISV-NFIFWQEYDDTSEGW  185 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDv-------------------------w~~~~V~~~i~~-nFIfwq~~~ds~EG~  185 (312)
                      +..++|++||++.++||.+|+.+...+                         -..+.+++|+++ ++-+|.+..+  +..
T Consensus        34 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~  111 (164)
T 2h30_A           34 YLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTD--NGG  111 (164)
T ss_dssp             GCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEEC--TTC
T ss_pred             HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEc--Cch
Confidence            334689999999999999999864321                         112344444444 2322333332  234


Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      .++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+.
T Consensus       112 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          112 TIAQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             HHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             HHHHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            6888999999999999997 69999999999998887777766553

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.50  E-value=1.6e-07  Score=77.21  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=71.7

Q ss_pred             HHHcCCeEEEEeecCCCcccchh-hcccCCCHHHHHHhh----ccEEEEEeccC-------Ch-----------------
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLML-NRDTWGNEAVSQIIS----VNFIFWQEYDD-------TS-----------------  182 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~l-nRDvw~~~~V~~~i~----~nFIfwq~~~d-------s~-----------------  182 (312)
                      +.-.+|++||++..+||.+|+.. -      +.+.++.+    .++.|+.++.+       +.                 
T Consensus        24 ~~~~gk~vlv~f~a~wC~~C~~~~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (158)
T 3eyt_A           24 ADLRGKVIVIEAFQMLCPGCVMHGI------PLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVG   97 (158)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEE
T ss_pred             HHhCCCEEEEEEECCcCcchhhhhh------HHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEE
Confidence            33458999999999999999984 3      23333333    35777776643       11                 


Q ss_pred             ---hHH----HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          183 ---EGW----KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       183 ---EG~----~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                         ++.    .++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.|.+
T Consensus        98 ~d~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A           98 VDQPGDGAMPRTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             EECCCSSSSCHHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             EcCccchhhHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence               111    5788999999999999997 699999999999999999999998864

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.48  E-value=5.8e-07  Score=73.36  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=70.4

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCCh--hH-------------------HHHHHhc
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTS--EG-------------------WKVCSFY  191 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~--EG-------------------~~~~~~Y  191 (312)
                      -.+|++||++.++||..|+.+-..+   ..+.+-+.+ ++.|+.++.+..  +.                   ..++..|
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  102 (154)
T 3kcm_A           26 LKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLY  102 (154)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHH
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHh
Confidence            3679999999999999999986654   333333333 677777777763  22                   2377889


Q ss_pred             CCCCCCeEEEEeCCCCeeEEEecCCC--ChHHHHHHHHHHHhhCCC
Q 021440          192 NMDSIPAVLVIDPITGQKICSWCGMI--NPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       192 ~~~~~P~i~IIdprTGe~v~~~~G~~--~~~~fl~~L~~fl~~~~~  235 (312)
                      .+..+|++.|||+ .|+.+..+.|..  +.+++.+.|.+.....+.
T Consensus       103 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~~  147 (154)
T 3kcm_A          103 GTTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELSKARE  147 (154)
T ss_dssp             TCCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC------
T ss_pred             CCCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHHHhhh
Confidence            9999999999997 699999999975  667888777776655443

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.48  E-value=5e-07  Score=80.71  Aligned_cols=118  Identities=15%  Similarity=0.191  Sum_probs=88.1

Q ss_pred             hhhcCCCccc--cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhH
Q 021440          110 ASLYRPPFHV--MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEG  184 (312)
Q Consensus       110 a~lfrPP~~l--~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG  184 (312)
                      +.||.+.-.+  +-..+|++.+   .+.+|.+||+++++||.+|+.+...+   ..+.+-+..   ++.|..++.+..+.
T Consensus         5 ~~l~~~~~~v~~l~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~   78 (244)
T 3q6o_A            5 SALYSPSDPLTLLQADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETN   78 (244)
T ss_dssp             -CCSCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTT
T ss_pred             cCCCCCCCCceeCChhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhh
Confidence            3466544333  3355676655   45679999999999999999996433   444445554   79999999988888


Q ss_pred             HHHHHhcCCCCCCeEEEEeCC--C--CeeEEEecCCCChHHHHHHHHHHHhhCCC
Q 021440          185 WKVCSFYNMDSIPAVLVIDPI--T--GQKICSWCGMINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       185 ~~~~~~Y~~~~~P~i~IIdpr--T--Ge~v~~~~G~~~~~~fl~~L~~fl~~~~~  235 (312)
                      ..++..|++..+|++.++++-  .  |..+ .+.| .+++.+.+.|.+++..+..
T Consensus        79 ~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~~  131 (244)
T 3q6o_A           79 SAVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHHD  131 (244)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhccc
Confidence            999999999999999999962  1  2323 4566 5899999999999987653

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.47  E-value=1.1e-06  Score=72.03  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCChh-----------------------HHHHHHh
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSE-----------------------GWKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~E-----------------------G~~~~~~  190 (312)
                      .+|++||++.++||..|+.+...+   ..+.+-+ ..++.++.++.+...                       ...++..
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  104 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES  104 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence            689999999999999999876543   2233333 345888888877532                       4678889


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      |.+..+|++.|||+ .|+.+..+   ++++++.+.|.+.+....
T Consensus       105 ~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~l~~~~~  144 (152)
T 2lrn_A          105 YCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVEKFVNGAK  144 (152)
T ss_dssp             TTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHHHHHTSSS
T ss_pred             hCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHHHHHhhcc
Confidence            99999999999997 69988775   356778788887776543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.47  E-value=9e-07  Score=72.05  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCChhH--------------------HHHHHh
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSEG--------------------WKVCSF  190 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~EG--------------------~~~~~~  190 (312)
                      +..++|++||++.++||..|+.+...+   ..+.+-+ ..++.++.++.+....                    ..++..
T Consensus        24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  100 (152)
T 3gl3_A           24 SDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRL  100 (152)
T ss_dssp             GGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHH
T ss_pred             HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHH
Confidence            445689999999999999999987654   2333333 3347777777774321                    156778


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCC--hHHHHHHHHHHHhhCC
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMIN--PQPLGEMLLPFMDRSP  234 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~--~~~fl~~L~~fl~~~~  234 (312)
                      |.+..+|++.|||+ .|+.+..+.|...  .+++.+.|.+.+...+
T Consensus       101 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A          101 YGVKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGNE  145 (152)
T ss_dssp             TTCCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC---
T ss_pred             cCCCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHcccc
Confidence            99999999999997 6999999999754  4677777776655443

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=6e-07  Score=71.51  Aligned_cols=96  Identities=5%  Similarity=0.032  Sum_probs=71.5

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      -..+|++++.     ++ +||+++++||..|+.+...+   ..+.+.+.. ++.|..++.+.  ...++..|++..+|++
T Consensus        13 ~~~~f~~~~~-----~~-vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A           13 TDENWRELLE-----GD-WMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTE--QPGLSGRFIINALPTI   81 (126)
T ss_dssp             CTTTHHHHTS-----SE-EEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             cHHHHHHHhC-----CC-EEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcC--CHHHHHHcCCcccCEE
Confidence            3456776542     23 89999999999999997654   334444443 78899887764  4568899999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +++.  .|+ +..+.|..+.++|.+.|.+.+
T Consensus        82 ~~~~--~G~-~~~~~G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           82 YHCK--DGE-FRRYQGPRTKKDFINFISDKE  109 (126)
T ss_dssp             EEEE--TTE-EEECCSCCCHHHHHHHHHTCG
T ss_pred             EEEe--CCe-EEEeecCCCHHHHHHHHHHHh
Confidence            9993  588 577899888888776666554

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=4.8e-07  Score=73.52  Aligned_cols=91  Identities=8%  Similarity=0.046  Sum_probs=70.1

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCC------
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMD------  194 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~------  194 (312)
                      ..+|++++  ++.++|++||+++++||.+|+.+...+   ..+.+-++. ++.|..++.+.  ...++..|++.      
T Consensus        14 ~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~~~~~   86 (137)
T 2dj0_A           14 DKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVGR--YTDVSTRYKVSTSPLTK   86 (137)
T ss_dssp             TTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTTT--CHHHHHHTTCCCCSSSS
T ss_pred             HhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCcc--CHHHHHHccCcccCCcC
Confidence            45688877  455678999999999999999997644   344444443 79999887664  45688999998      


Q ss_pred             CCCeEEEEeCCCCeeEEEecCCCChHH
Q 021440          195 SIPAVLVIDPITGQKICSWCGMINPQP  221 (312)
Q Consensus       195 ~~P~i~IIdprTGe~v~~~~G~~~~~~  221 (312)
                      .+|++.++.  .|+.+..+.|..+.++
T Consensus        87 ~~Pt~~~~~--~G~~~~~~~G~~~~~~  111 (137)
T 2dj0_A           87 QLPTLILFQ--GGKEAMRRPQIDKKGR  111 (137)
T ss_dssp             CSSEEEEES--SSSEEEEESCBCSSSC
T ss_pred             CCCEEEEEE--CCEEEEEecCcCchHH
Confidence            999999994  5998888888765543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.43  E-value=1.5e-06  Score=73.70  Aligned_cols=94  Identities=20%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCCh---hHHHHHHhcCCC----------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTS---EGWKVCSFYNMD----------------  194 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~---EG~~~~~~Y~~~----------------  194 (312)
                      ++||+||++..+||..|+.+...+   ..+.+-++ .++.++.++.+..   ...+++..|++.                
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  135 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDL  135 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHH
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHh
Confidence            579999999999999999886554   23333333 5777777777653   345677777663                


Q ss_pred             -------CCCeEEEEeCCCCeeEEEecCCCC--hHHHHHHHHHHHhh
Q 021440          195 -------SIPAVLVIDPITGQKICSWCGMIN--PQPLGEMLLPFMDR  232 (312)
Q Consensus       195 -------~~P~i~IIdprTGe~v~~~~G~~~--~~~fl~~L~~fl~~  232 (312)
                             .+|++.|||+ .|+.+..+.|..+  .+++.+.|...+.+
T Consensus       136 ~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          136 KAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             HTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             ccccccCCCCEEEEECC-CCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                   7999999997 6999999999764  78888888887754

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.43  E-value=2.4e-07  Score=72.90  Aligned_cols=88  Identities=9%  Similarity=0.093  Sum_probs=67.9

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-----cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-----NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-----nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      ..+|.+||+++++||..|+.+...+   ..+.+-++.     ++.|..++.+..+   ++.  ++..+|++.++++ .|+
T Consensus        23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~--~v~~~Pt~~~~~~-~~~   93 (121)
T 2djj_A           23 DDTKDVLIEFYAPWCGHCKALAPKY---EELGALYAKSEFKDRVVIAKVDATAND---VPD--EIQGFPTIKLYPA-GAK   93 (121)
T ss_dssp             CTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHTTSSCTTSSEEEEEETTTSC---CSS--CCSSSSEEEEECS-SCT
T ss_pred             cCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHhhcccCCceEEEEEECcccc---ccc--ccCcCCeEEEEeC-cCC
Confidence            4689999999999999999998754   456666655     7899999887654   444  8899999999986 344


Q ss_pred             e-EEEecCCCChHHHHHHHHHHH
Q 021440          209 K-ICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       209 ~-v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      . +..+.|..+.++|.+.|.+.+
T Consensus        94 ~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           94 GQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             TSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             CCceEecCCCCHHHHHHHHHhcc
Confidence            2 667889888888776666543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.42  E-value=3.4e-07  Score=74.93  Aligned_cols=99  Identities=17%  Similarity=0.243  Sum_probs=70.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      -..+|.+++..+ ..+|++||+++.+||.+|+.|..      .+.++.++  ++.|+.++.+...     ..|++..+|+
T Consensus        16 ~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p------~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt   83 (135)
T 2dbc_A           16 SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQ------HLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPT   83 (135)
T ss_dssp             CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHH------HHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSE
T ss_pred             CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCE
Confidence            344566666544 34689999999999999999964      44555544  4788888877642     6899999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChH---HHHHHHHHHHhhC
Q 021440          199 VLVIDPITGQKICSWCGMINPQ---PLGEMLLPFMDRS  233 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~---~fl~~L~~fl~~~  233 (312)
                      ++++.  .|+.+..+.|..+..   --.+.|..+|.++
T Consensus        84 ~~~~~--~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           84 IFVYK--NGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             EEEES--SSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             EEEEE--CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            99996  699888888875211   0234466666554

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.41  E-value=6.7e-07  Score=83.27  Aligned_cols=100  Identities=16%  Similarity=0.182  Sum_probs=79.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      .+|++++   ++.+|++||+++++||.+|+.|...+   ..+.+.++..+.|..++.+..+...++..|++..+|++.++
T Consensus        25 ~~f~~~i---~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~   98 (298)
T 3ed3_A           25 KSFDKAI---HNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF   98 (298)
T ss_dssp             HHHHHHH---TSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEE
Confidence            3466665   35689999999999999999997654   45666666678888888888788899999999999999999


Q ss_pred             eCCCCe-----------------eEEEecCCCChHHHHHHHHHHH
Q 021440          203 DPITGQ-----------------KICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       203 dprTGe-----------------~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      ++  |+                 ....+.|..+.+.+++-|.+.+
T Consensus        99 ~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           99 RP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             EC--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             EC--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence            86  44                 3567899888888766665544

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.41  E-value=1.8e-06  Score=71.11  Aligned_cols=95  Identities=16%  Similarity=0.102  Sum_probs=71.4

Q ss_pred             cCCeEEEEeecCCCcc-cchhhcccCCCHHHHHHhhc-----cEEEEEeccCC----h----------------------
Q 021440          135 QDKWLLVNLQSTKEFS-SLMLNRDTWGNEAVSQIISV-----NFIFWQEYDDT----S----------------------  182 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~-c~~lnRDvw~~~~V~~~i~~-----nFIfwq~~~ds----~----------------------  182 (312)
                      .+||+||++..+||.+ |...-..+   ..+.+-+++     ++.++.++.|.    +                      
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d   98 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE   98 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence            5899999999999998 98764432   223333332     66666666553    1                      


Q ss_pred             hHHHHHHhcCCCCCC---------------eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          183 EGWKVCSFYNMDSIP---------------AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       183 EG~~~~~~Y~~~~~P---------------~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      ....+++.|++...|               ++.|||+ .|+.+..+.|..+++++.+.|.+.|..+
T Consensus        99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~  163 (164)
T 2ggt_A           99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY  163 (164)
T ss_dssp             HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            123577888888888               8999997 6999999999999999999999988764

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.40  E-value=7.9e-07  Score=72.71  Aligned_cols=90  Identities=14%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             CeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEecc---CC----------------------hhHHHHHHh
Q 021440          137 KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYD---DT----------------------SEGWKVCSF  190 (312)
Q Consensus       137 KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~---ds----------------------~EG~~~~~~  190 (312)
                      |++||++.++||..|+.+...+      .++.++ ++.|+.++.   ++                      .+...++..
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l------~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  104 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGL------HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAAR  104 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHH------HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTT
T ss_pred             CeEEEEEEcccChhHHHHHHHH------HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHH
Confidence            9999999999999999986554      333322 555555555   22                      145678889


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      |.+..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+...
T Consensus       105 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          105 FKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             SSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             hCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            99999999999997 6999999999999998887777765443

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.38  E-value=2.6e-06  Score=74.41  Aligned_cols=92  Identities=12%  Similarity=0.021  Sum_probs=71.6

Q ss_pred             HHHcCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCC
Q 021440          132 ALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT  206 (312)
Q Consensus       132 Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprT  206 (312)
                      .+..++.+ ||+++++||.+|+.+...+   ..+.+-..    .++.|..++.+  +...++..|++..+|+++|+.  .
T Consensus       129 ~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~--~  201 (226)
T 1a8l_A          129 IRNIDQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAI--EYPEWADQYNVMAVPKIVIQV--N  201 (226)
T ss_dssp             HTTCCSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGG--GCHHHHHHTTCCSSCEEEEEE--T
T ss_pred             HHhcCCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEcc--cCHHHHHhCCCcccCeEEEEe--C
Confidence            34444555 9999999999999997543   34444444    47888888765  455688999999999988875  6


Q ss_pred             CeeEEEecCCCChHHHHHHHHHHH
Q 021440          207 GQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       207 Ge~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      |+.+..+.|..+.++|.+.|.+.+
T Consensus       202 G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          202 GEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CceeEEEcCCCCHHHHHHHHHHhh
Confidence            888888999999998888887765

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.37  E-value=1.8e-06  Score=75.69  Aligned_cols=101  Identities=10%  Similarity=0.152  Sum_probs=78.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      -..+|++++    .++|.+||+++++||.+|+.+...+   ..+.+-++..   +.|..++.+.  ...++..|++..+|
T Consensus        21 ~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~P   91 (241)
T 3idv_A           21 NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSGYP   91 (241)
T ss_dssp             CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccC--CHHHHHhcCCCcCC
Confidence            345666655    5689999999999999999997644   3444444443   8888887664  45789999999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      ++.+++  .|+.+ .+.|..+.+++.+.+.+.+...
T Consensus        92 t~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~~  124 (241)
T 3idv_A           92 TIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQPD  124 (241)
T ss_dssp             EEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHSTT
T ss_pred             EEEEEc--CCCcc-cccCcccHHHHHHHHhhccCcc
Confidence            999997  37766 5889999999998888887653

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.37  E-value=2.5e-06  Score=71.86  Aligned_cols=99  Identities=11%  Similarity=0.009  Sum_probs=81.8

Q ss_pred             ccccccHHHHHHHHHHcCCeEEEEeecCC--CcccchhhcccCCCHHHHHHhhc---c-EEEEEeccCChhHHHHHHhcC
Q 021440          119 VMFNGSFEKAKDAALAQDKWLLVNLQSTK--EFSSLMLNRDTWGNEAVSQIISV---N-FIFWQEYDDTSEGWKVCSFYN  192 (312)
Q Consensus       119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~--~f~c~~lnRDvw~~~~V~~~i~~---n-FIfwq~~~ds~EG~~~~~~Y~  192 (312)
                      .+-..+|++.+    ..++.+||++..+|  |.+|++|.      +-+.++.++   . +.|+.+|+|  +...++..|+
T Consensus        21 ~~t~~~F~~~v----~~~~~vlVdF~a~~crCgpCk~ia------Pvleela~e~~g~~v~~~KVdvD--e~~~lA~~yg   88 (140)
T 2qgv_A           21 PVSESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNP------VMIGELLHEFPDYTWQVAIADLE--QSEAIGDRFG   88 (140)
T ss_dssp             ECCHHHHHHHH----HTCSSEEEEECCCTTTCTTTTHHH------HHHHHHHTTCTTSCCEEEECCHH--HHHHHHHHHT
T ss_pred             cCCHHHHHHHH----hCCCCEEEEEeCCcccCCcHHHHH------hHHHHHHHHcCCCeEEEEEEECC--CCHHHHHHcC
Confidence            44566788776    26788999999998  89999994      556666654   4 788887555  7789999999


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.++|+++++-  .|+.+.+..|..+.+++.+.|.+++.
T Consensus        89 V~sIPTlilFk--~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           89 AFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             CCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CccCCEEEEEE--CCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            99999999997  59999999999999999999998884

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.36  E-value=6.7e-07  Score=71.62  Aligned_cols=93  Identities=9%  Similarity=0.072  Sum_probs=69.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE-E
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI-C  211 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v-~  211 (312)
                      .+|.+||+++++||..|+.+...+   ..+.+-++  .+++|..++.+..  ..++..|++..+|+++++++ .|+.. .
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~-g~~~~~~   97 (133)
T 2dj3_A           24 PKKDVLIEFYAPWCGHCKQLEPIY---TSLGKKYKGQKDLVIAKMDATAN--DITNDQYKVEGFPTIYFAPS-GDKKNPI   97 (133)
T ss_dssp             TTSEEEEEECCTTCSHHHHHHHHH---HHHHHHHTTSSSEEEEEECTTTS--CCCCSSCCCSSSSEEEEECT-TCTTSCE
T ss_pred             CCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCCEEEEEecCCcC--HHHHhhcCCCcCCEEEEEeC-CCcccce
Confidence            589999999999999999997653   44555554  4699998876643  35667899999999999985 23321 2


Q ss_pred             Eec-CCCChHHHHHHHHHHHhhC
Q 021440          212 SWC-GMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       212 ~~~-G~~~~~~fl~~L~~fl~~~  233 (312)
                      .+. |..++++|.+.|.+.+...
T Consensus        98 ~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           98 KFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             ECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EecCCCcCHHHHHHHHHHhcccc
Confidence            366 6688998888888877543

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.36  E-value=4.8e-06  Score=69.85  Aligned_cols=112  Identities=6%  Similarity=0.070  Sum_probs=83.8

Q ss_pred             hHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCCC--cccchhhcccCCCHHHHHHhhc---cEEEEEeccC
Q 021440          106 HDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKE--FSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDD  180 (312)
Q Consensus       106 ~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~--f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~d  180 (312)
                      .++|...++-|  .+-..+|++.+.   +.++.+||+|..+||  .+|+++.      +-+-++.++   .+.|+.+|+ 
T Consensus         8 ~~rl~~~~g~~--~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~ia------Pvleela~e~~~~v~~~KVdv-   75 (137)
T 2qsi_A            8 ARAAARPNAPT--LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLA------VVLPELINAFPGRLVAAEVAA-   75 (137)
T ss_dssp             ---------CE--EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHH------HHHHHHHHTSTTTEEEEEECG-
T ss_pred             HHHHHHhcCCc--ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHH------hHHHHHHHHccCCcEEEEEEC-
Confidence            34555544443  345678988773   445699999999999  9999994      455555554   588998865 


Q ss_pred             ChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       181 s~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                       .+...++..|++.+.|++++.-  .|+.+.+..|..+.+++.+.|.+.++.
T Consensus        76 -De~~~la~~ygV~siPTlilFk--dG~~v~~~vG~~~k~~l~~~l~~~l~~  124 (137)
T 2qsi_A           76 -EAERGLMARFGVAVCPSLAVVQ--PERTLGVIAKIQDWSSYLAQIGAMLAE  124 (137)
T ss_dssp             -GGHHHHHHHHTCCSSSEEEEEE--CCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHcCCccCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             4678899999999999999997  599999999999999999999888843

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.35  E-value=1.6e-06  Score=87.06  Aligned_cols=119  Identities=13%  Similarity=0.079  Sum_probs=93.2

Q ss_pred             hhhcCCCccc--cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhH
Q 021440          110 ASLYRPPFHV--MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEG  184 (312)
Q Consensus       110 a~lfrPP~~l--~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG  184 (312)
                      +.||.+...+  +-..+|++++   .+.+|.+||+++++||.+|+.+...+   +.+.+-++.   ++.|..++.+..+.
T Consensus         5 ~~Ly~~~~~V~~Lt~~~f~~~v---~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~   78 (519)
T 3t58_A            5 SVLYSSSDPLTLLDADSVRPTV---LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETN   78 (519)
T ss_dssp             CCSCCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGG
T ss_pred             cccCCCCCCcEECChHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCcccc
Confidence            3567555444  3355677655   34579999999999999999997654   555555555   79999999988888


Q ss_pred             HHHHHhcCCCCCCeEEEEeCC--CCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          185 WKVCSFYNMDSIPAVLVIDPI--TGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       185 ~~~~~~Y~~~~~P~i~IIdpr--TGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ..++..|++..+|++.++++-  .|+.+....|..+++.+.+.|.+++....
T Consensus        79 ~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           79 SAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             HHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999999961  35555556777899999999999998765

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.34  E-value=1.1e-06  Score=72.77  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCC-----------------hhHHHHHHhcCCCCC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDT-----------------SEGWKVCSFYNMDSI  196 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds-----------------~EG~~~~~~Y~~~~~  196 (312)
                      ++|++||++.++||..|+.+-..+   ..+.+-+ +.++.|+.++.+.                 .....++..|++..+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  116 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL  116 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc
Confidence            689999999999999999876544   2233333 3578888888776                 224578899999999


Q ss_pred             CeEEEEeCCCCeeEEEecCCC--ChHHHHHHHHH
Q 021440          197 PAVLVIDPITGQKICSWCGMI--NPQPLGEMLLP  228 (312)
Q Consensus       197 P~i~IIdprTGe~v~~~~G~~--~~~~fl~~L~~  228 (312)
                      |++.|||+ .|+.+..+.|..  +..++++.+.+
T Consensus       117 P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A          117 PDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             SEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred             ceEEEEcC-CCCEEEEEeCCCccchHHHHHHHHh
Confidence            99999997 699999999975  55666655543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.32  E-value=2.3e-06  Score=70.73  Aligned_cols=90  Identities=19%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH---------------------HHHHhcCC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW---------------------KVCSFYNM  193 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~---------------------~~~~~Y~~  193 (312)
                      .+|++||++..+||.+|...-..+  .+-..+|-..++.++.++.|..+..                     .++..|.+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l--~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  111 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLAL--RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNV  111 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHH--HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHH--HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCc
Confidence            579999999999999999765433  1122223334588888887765421                     27789999


Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                      ..+|++.|||+ .|+.+..+.|..+.++.+..+.
T Consensus       112 ~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A          112 TNLPSVFLVNR-NNELSARGENIKDLDEAIKKLL  144 (152)
T ss_dssp             CSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHH
T ss_pred             ccCceEEEECC-CCeEEEecCCHHHHHHHHHHHH
Confidence            99999999997 6999999999888777666554

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=3.3e-06  Score=69.03  Aligned_cols=88  Identities=17%  Similarity=0.204  Sum_probs=68.6

Q ss_pred             cCCeEEEEeecCCCcc--cchhhcccCCCHHHHHHhh-----ccEEEEEeccCChh-----------------------H
Q 021440          135 QDKWLLVNLQSTKEFS--SLMLNRDTWGNEAVSQIIS-----VNFIFWQEYDDTSE-----------------------G  184 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~--c~~lnRDvw~~~~V~~~i~-----~nFIfwq~~~ds~E-----------------------G  184 (312)
                      .+|++||++..+||.+  |+..-..      +.++.+     .++.|+.++.|...                       .
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~------l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~  105 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSE------LREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLN  105 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHH------HHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGG
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHH------HHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccc
Confidence            6899999999999999  9987543      333332     34888888877653                       3


Q ss_pred             HHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          185 WKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       185 ~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      ..++..|.+..+|++.|||+ .|+.+..+.   +++++.+.|.+.+.+
T Consensus       106 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~~  149 (150)
T 3fw2_A          106 SEVAKQYSIYKIPANILLSS-DGKILAKNL---RGEELKKKIENIVEE  149 (150)
T ss_dssp             CHHHHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCCCccCeEEEECC-CCEEEEccC---CHHHHHHHHHHHHhc
Confidence            47888999999999999997 699887753   788888888887754

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.29  E-value=5.9e-06  Score=68.58  Aligned_cols=95  Identities=12%  Similarity=0.038  Sum_probs=71.7

Q ss_pred             cCCeEEEEeecCCCcc-cchhhcccCCCHHHHHHhh-----ccEEEEEeccCC----hh---------------------
Q 021440          135 QDKWLLVNLQSTKEFS-SLMLNRDTWGNEAVSQIIS-----VNFIFWQEYDDT----SE---------------------  183 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~-c~~lnRDvw~~~~V~~~i~-----~nFIfwq~~~ds----~E---------------------  183 (312)
                      .+||+||++..+||.+ |...-..+   ..+.+-++     .++.++.++.|.    ++                     
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~  101 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK  101 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence            5799999999999998 98764332   22333332     367777776652    22                     


Q ss_pred             -HHHHHHhcCCCCCC---------------eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          184 -GWKVCSFYNMDSIP---------------AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       184 -G~~~~~~Y~~~~~P---------------~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                       ...+++.|.+...|               ++.|||+ .|+.+..+.|..+++++.+.|.+.+...
T Consensus       102 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~  166 (171)
T 2rli_A          102 QVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF  166 (171)
T ss_dssp             HHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence             23577788887777               8999997 6999999999999999999999988764

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.29  E-value=3.9e-06  Score=69.58  Aligned_cols=88  Identities=10%  Similarity=0.097  Sum_probs=67.8

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCC-------------------hhH--------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDT-------------------SEG--------  184 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds-------------------~EG--------  184 (312)
                      -.+|++||++.++||..|+.+.      +.+.++.++  ++.|+.++.+.                   .+.        
T Consensus        35 ~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (165)
T 3ha9_A           35 VGGDVVILWFMAAWCPSCVYMA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY  108 (165)
T ss_dssp             CCSSEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred             hCCCEEEEEEECCCCcchhhhH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence            3679999999999999999985      455666554  67777777762                   211        


Q ss_pred             -----------HHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC-ChHHHHHHHHHHH
Q 021440          185 -----------WKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI-NPQPLGEMLLPFM  230 (312)
Q Consensus       185 -----------~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~-~~~~fl~~L~~fl  230 (312)
                                 ..++..|++..+|++.|||+ .|+.+.  .|.. +.+++.+.|.+.+
T Consensus       109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             SCTTSEEEECCSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred             CCCCeeEEeChHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence                       26778899999999999997 688776  7888 8888888777654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.28  E-value=2.9e-06  Score=68.37  Aligned_cols=90  Identities=10%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChh-H-HHH--------------------HHhc
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSE-G-WKV--------------------CSFY  191 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~E-G-~~~--------------------~~~Y  191 (312)
                      .+|++||++.++||.+|+.+-..+-..+.+.+.++ .++.++.++.+... . .++                    +..|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            68999999999999999998666655566666665 45888888777432 1 222                    3378


Q ss_pred             CCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          192 NMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       192 ~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      .+..+|++.|||+ .|+.+.   +.++.+++.+.|.+
T Consensus       106 ~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~~  138 (142)
T 3ewl_A          106 DIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLAT  138 (142)
T ss_dssp             CCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHHC
T ss_pred             CCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHHH
Confidence            8999999999997 688764   45677766555544

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.26  E-value=3.2e-06  Score=68.48  Aligned_cols=80  Identities=10%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHH----------------------HHHHhc
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGW----------------------KVCSFY  191 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~----------------------~~~~~Y  191 (312)
                      .+|++||++.++||.+|+..-..+-.++.+.+-++ .++.++.++.+.....                      .+...|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            47999999999999999988766655555655553 5688888887764221                      257788


Q ss_pred             CCCCCCeEEEEeCCCCeeEEEecC
Q 021440          192 NMDSIPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       192 ~~~~~P~i~IIdprTGe~v~~~~G  215 (312)
                      .+..+|++.|||+ .|+.+....|
T Consensus       110 ~v~~~P~~~lid~-~G~i~~~~~~  132 (142)
T 3eur_A          110 DLRAIPTLYLLDK-NKTVLLKDAT  132 (142)
T ss_dssp             CCTTCSEEEEECT-TCBEEEEEEC
T ss_pred             CCCcCCeEEEECC-CCcEEecCCC
Confidence            9999999999996 6998876544

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.25  E-value=3e-06  Score=70.66  Aligned_cols=100  Identities=12%  Similarity=0.065  Sum_probs=62.5

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCC--CcccchhhcccCCCHHHHHHhhc--cEE--EEEeccCChhHHHHHHhcCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTK--EFSSLMLNRDTWGNEAVSQIISV--NFI--FWQEYDDTSEGWKVCSFYNM  193 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~--~f~c~~lnRDvw~~~~V~~~i~~--nFI--fwq~~~ds~EG~~~~~~Y~~  193 (312)
                      +-..+|++.+.    ..+.++|++...|  |.+|+.|.      +.+.++.++  ++.  |+.++.|  +...++..|++
T Consensus        22 l~~~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~l~------P~l~~la~~~~~v~~~~~~Vd~d--~~~~la~~~~V   89 (142)
T 2es7_A           22 VEASTVDDWIK----RVGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADLE--QSEAIGDRFNV   89 (142)
T ss_dssp             CCCC------------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECHH--HHHHHHHTTTC
T ss_pred             cccccHHHHHH----hCCCEEEEEECCCCCCccHHHHH------HHHHHHHHHhcccceeEEEEECC--CCHHHHHhcCC
Confidence            44567888764    3344778888766  89999985      444454443  566  7777654  56679999999


Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      ..+|+++++  +.|+.+..+.|..+.+++.+.|.+.+...
T Consensus        90 ~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           90 RRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             CSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC--
T ss_pred             CcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            999999999  47999988999999999888888887543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.24  E-value=3e-06  Score=62.20  Aligned_cols=81  Identities=12%  Similarity=0.016  Sum_probs=62.3

Q ss_pred             EEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCC
Q 021440          139 LLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN  218 (312)
Q Consensus       139 LLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~  218 (312)
                      .+|+++++||..|+.+...+   +.+.+-...++.|..++.+.  ...++..|++..+|++.|    .|+.  .+.|..+
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~----~G~~--~~~G~~~   72 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIMV--DREKAIEYGLMAVPAIAI----NGVV--RFVGAPS   72 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTTT--CGGGGGGTCSSCSSEEEE----TTTE--EEECSSC
T ss_pred             EEEEEECCCCcchHHHHHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHhCCceeeCEEEE----CCEE--EEccCCC
Confidence            47899999999999997643   34444444578888887664  346888999999999998    4665  6788888


Q ss_pred             hHHHHHHHHHHH
Q 021440          219 PQPLGEMLLPFM  230 (312)
Q Consensus       219 ~~~fl~~L~~fl  230 (312)
                      .+++.+.|.+.+
T Consensus        73 ~~~l~~~l~~~l   84 (85)
T 1nho_A           73 REELFEAINDEM   84 (85)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999888887765

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.21  E-value=4.6e-06  Score=67.59  Aligned_cols=77  Identities=14%  Similarity=0.065  Sum_probs=59.2

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh----------------------HHHHH
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE----------------------GWKVC  188 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E----------------------G~~~~  188 (312)
                      .-++|++||++..+||..|+.+...+   ..+.+-++  .++.++.++.+...                      ...++
T Consensus        25 ~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  101 (144)
T 1i5g_A           25 SLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLT  101 (144)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH
T ss_pred             HcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHH
Confidence            34689999999999999999886554   33444444  47888888777532                      46788


Q ss_pred             HhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          189 SFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       189 ~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      +.|++..+|++.|||++.|+.+..
T Consensus       102 ~~~~v~~~P~~~lid~~~G~i~~~  125 (144)
T 1i5g_A          102 TGFDVKSIPTLVGVEADSGNIITT  125 (144)
T ss_dssp             HHTTCCSSSEEEEEETTTCCEEES
T ss_pred             HHcCCCCCCEEEEEECCCCcEEec
Confidence            999999999999999546887765

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.20  E-value=3.6e-06  Score=68.50  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=59.7

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh----------------------HHHH
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE----------------------GWKV  187 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E----------------------G~~~  187 (312)
                      +.-++|++||++..+||..|+.+...+   ..+.+-++  .++.++.++.+...                      ...+
T Consensus        24 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  100 (146)
T 1o8x_A           24 KSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL  100 (146)
T ss_dssp             GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred             HHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence            344689999999999999999886544   23444444  47777777777532                      4678


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEe
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSW  213 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~  213 (312)
                      ++.|++..+|++.|||++.|+.+..+
T Consensus       101 ~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A          101 SKHFNVESIPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             HHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHhCCCCCCEEEEEECCCCeEEEec
Confidence            89999999999999995478877653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.18  E-value=5.6e-06  Score=70.54  Aligned_cols=100  Identities=8%  Similarity=0.072  Sum_probs=72.3

Q ss_pred             HcCCe-EEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--------h-------------------hHH
Q 021440          134 AQDKW-LLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--------S-------------------EGW  185 (312)
Q Consensus       134 ~~~Kw-LLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--------~-------------------EG~  185 (312)
                      -.+|+ +||++.++||..|+..-..+  ..-..+|-..++.|+.++.+.        .                   +..
T Consensus        43 ~~gk~~vlv~F~a~~C~~C~~~~~~l--~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~  120 (196)
T 2ywi_A           43 VKSDAATVIMFICNHCPFVKHVQHEL--VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ  120 (196)
T ss_dssp             HCCSSEEEEEECCSSCHHHHHHHHHH--HHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC
T ss_pred             hCCCCeEEEEEeCCCCccHHHHHHHH--HHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch
Confidence            35674 99999999999999775432  111222323458888887743        1                   123


Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEE---------ecCCCChHHHHHHHHHHHhhCCCC
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICS---------WCGMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~---------~~G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      .++..|.+..+|++.|||+ .|+.+..         +.|..+++++.+.|.+.+...+..
T Consensus       121 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~  179 (196)
T 2ywi_A          121 EVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVP  179 (196)
T ss_dssp             HHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCC
Confidence            5677888999999999997 6998877         347778999999999998776543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.18  E-value=2.7e-06  Score=68.10  Aligned_cols=94  Identities=10%  Similarity=0.081  Sum_probs=65.6

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecC-------CCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCC-----hhHHHH
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQST-------KEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDT-----SEGWKV  187 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~-------~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds-----~EG~~~  187 (312)
                      .+|++++..+  .+|.++|+++++       ||.+|+.+..      .+.++.+   .++.|..++++.     .+...+
T Consensus        13 ~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A           13 EEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEP------VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             HHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHH------HHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             HHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhhH------HHHHHHHHcCCCcEEEEEECCCchhhhchhHHH
Confidence            3455555433  489999999999       9999999964      4455554   469999998853     234468


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +..|++..+|++++++.  |.++....| .+++.    |.+||+
T Consensus        85 ~~~~~i~~~Pt~~~~~~--~~~~~g~~~-~~~~~----l~~~i~  121 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGT--PQKLVESEC-LQANL----VEMLFS  121 (123)
T ss_dssp             HHHHCCCSSSEEEETTS--SCEEEGGGG-GCHHH----HHHHHH
T ss_pred             HHHCCCCeeCEEEEEcC--CceEecccc-CCHHH----HHHHHh
Confidence            88899999999999986  555543343 24444    445543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.17  E-value=1e-06  Score=80.54  Aligned_cols=102  Identities=11%  Similarity=0.131  Sum_probs=75.1

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..+|.+++..+ ..+|++||+|+.+||.+|+.|..      .+.++..+  ++.|+.++++.   ..++..|++..+|++
T Consensus       120 ~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p------~l~~La~~~~~v~f~kVd~d~---~~l~~~~~I~~~PTl  189 (245)
T 1a0r_P          120 GEQFLETIEKE-QKITTIVVHIYEDGIKGCDALNS------SLICLAAEYPMVKFCKIKASN---TGAGDRFSSDVLPTL  189 (245)
T ss_dssp             HHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHHHCTTSEEEEEEHHH---HCCTTSSCTTTCSEE
T ss_pred             HHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCCEEEEEeCCc---HHHHHHCCCCCCCEE
Confidence            34566655433 35899999999999999999964      44444443  37888887754   457889999999999


Q ss_pred             EEEeCCCCeeEEEecCCCC---hHHHHHHHHHHHhhCCC
Q 021440          200 LVIDPITGQKICSWCGMIN---PQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~---~~~fl~~L~~fl~~~~~  235 (312)
                      +|+.  .|+.+..+.|+.+   .+-..+.|..||.++..
T Consensus       190 l~~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          190 LVYK--GGELLSNFISVTEQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             EEEE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred             EEEE--CCEEEEEEeCCcccccccccHHHHHHHHHHcCC
Confidence            9886  5999988888643   12346778888887643

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.16  E-value=6.1e-06  Score=60.50  Aligned_cols=82  Identities=13%  Similarity=0.050  Sum_probs=62.1

Q ss_pred             CeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440          137 KWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       137 KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~  216 (312)
                      +..+|++.++||..|+.+...+   ..+.+-...++.|..++.+..  ..++..|++..+|++.|    .|+.  .+.|.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~   71 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVMEN--PQKAMEYGIMAVPTIVI----NGDV--EFIGA   71 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESSSS--CCTTTSTTTCCSSEEEE----TTEE--ECCSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHH---HHHHHHcCCceEEEEEECCCC--HHHHHHCCCcccCEEEE----CCEE--eeecC
Confidence            4578999999999999996533   233333344788888877643  36788899999999998    4775  78898


Q ss_pred             CChHHHHHHHHHH
Q 021440          217 INPQPLGEMLLPF  229 (312)
Q Consensus       217 ~~~~~fl~~L~~f  229 (312)
                      .+++++.+.|.+.
T Consensus        72 ~~~~~l~~~l~~~   84 (85)
T 1fo5_A           72 PTKEALVEAIKKR   84 (85)
T ss_dssp             SSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            8898888877764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.16  E-value=6.6e-06  Score=66.34  Aligned_cols=79  Identities=15%  Similarity=0.065  Sum_probs=59.3

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh----------------------HHHH
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE----------------------GWKV  187 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E----------------------G~~~  187 (312)
                      +.-++|++||++..+||..|+.+...+   ..+.+-++  .++.++.++.|...                      ...+
T Consensus        24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (144)
T 1o73_A           24 GSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL  100 (144)
T ss_dssp             GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             HHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHH
Confidence            445789999999999999999886543   22333333  46777777777632                      4578


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEe
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSW  213 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~  213 (312)
                      ++.|++..+|++.|||+..|+.+..+
T Consensus       101 ~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          101 GKTFGVESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHcCCCCCCEEEEEECCCCeEEecc
Confidence            89999999999999995578877653

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.14  E-value=8.6e-06  Score=67.81  Aligned_cols=95  Identities=13%  Similarity=0.111  Sum_probs=67.7

Q ss_pred             cCCe-EEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------HHHHHHhcCC
Q 021440          135 QDKW-LLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------GWKVCSFYNM  193 (312)
Q Consensus       135 ~~Kw-LLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------G~~~~~~Y~~  193 (312)
                      .+|+ ++|++. ++||..|...-..+  .+...+|-..++.++.++.|+++                   ...++..|.+
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  104 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAF--RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGA  104 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHH--HHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCC
Confidence            4677 999999 99999999876543  12223333346888888888653                   3457778888


Q ss_pred             CC----CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          194 DS----IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       194 ~~----~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      ..    +|++.|||+ .|+.+..+.|...+...++.+.+.|+.
T Consensus       105 ~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A          105 KGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             CCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             CCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence            77    999999997 699999999865555555555555443

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.12  E-value=1.2e-05  Score=76.74  Aligned_cols=100  Identities=16%  Similarity=0.178  Sum_probs=78.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh------hccEEEEEeccCChhHHHHHHhcCCCC
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII------SVNFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i------~~nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      ..+|++++    ..+|++||+++++||..|+.|...+   +.+.+.+      +.++.|..++.+..  ..++..|++..
T Consensus        12 ~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~   82 (382)
T 2r2j_A           12 TENIDEIL----NNADVALVNFYADWCRFSQMLHPIF---EEASDVIKEEFPNENQVVFARVDCDQH--SDIAQRYRISK   82 (382)
T ss_dssp             TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTCC---CCEEEEEEETTTC--HHHHHHTTCCE
T ss_pred             HHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHHhhcCCCCceEEEEEECCcc--HHHHHhcCCCc
Confidence            45677765    3579999999999999999997543   3444445      33588998877643  67999999999


Q ss_pred             CCeEEEEeCCCCeeEE-EecCCCChHHHHHHHHHHHhh
Q 021440          196 IPAVLVIDPITGQKIC-SWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~-~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      ||++.++.  .|+.+. .+.|..+.+.+++.|.+.+..
T Consensus        83 ~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (382)
T 2r2j_A           83 YPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKSD  118 (382)
T ss_dssp             ESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred             CCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhccC
Confidence            99999886  588776 489999999998888888754

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.12  E-value=1e-05  Score=79.65  Aligned_cols=99  Identities=9%  Similarity=0.089  Sum_probs=79.9

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      -..+|++++    ++++++||+++++||..|+.|....   ..+.+-++. ++.|..++.+..  ..+++.|++..||++
T Consensus        20 ~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~   90 (504)
T 2b5e_A           20 ATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEY---VKAAETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPSL   90 (504)
T ss_dssp             CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSEE
T ss_pred             CHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhccCCeEEEEEECCCC--HHHHHhcCCCcCCEE
Confidence            356788865    4689999999999999999997643   455556665 599999877654  679999999999999


Q ss_pred             EEEeCCCCee--EEEecCCCChHHHHHHHHHHH
Q 021440          200 LVIDPITGQK--ICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       200 ~IIdprTGe~--v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      .++..  |+.  +..+.|..+.+.+++.|.+.+
T Consensus        91 ~~~~~--g~~~~~~~~~G~~~~~~l~~~l~~~~  121 (504)
T 2b5e_A           91 KIFKN--SDVNNSIDYEGPRTAEAIVQFMIKQS  121 (504)
T ss_dssp             EEEET--TCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             EEEeC--CccccceeecCCCCHHHHHHHHHHhc
Confidence            99974  776  778999999999888877665

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.12  E-value=8.5e-06  Score=68.55  Aligned_cols=78  Identities=14%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhH----------------------HHH
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEG----------------------WKV  187 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG----------------------~~~  187 (312)
                      +.-++|++||++..+||.+|+.+...+   ..+.+-+++  ++.++.++.|....                      ..+
T Consensus        44 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  120 (165)
T 3s9f_A           44 DSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEAL  120 (165)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             HHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHH
Confidence            334689999999999999999986544   334444443  67777777776532                      678


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      ++.|.+..+|++.|||+.+|+.+..
T Consensus       121 ~~~~~v~~~Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A          121 TKKYSVESIPTLIGLNADTGDTVTT  145 (165)
T ss_dssp             HHHTTCCSSSEEEEEETTTCCEEES
T ss_pred             HHHcCCCCCCEEEEEeCCCCEEEec
Confidence            8999999999999999855887765

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.12  E-value=1.3e-05  Score=66.31  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--------Chh-HHHHHH-hc-------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--------TSE-GWKVCS-FY-------------  191 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--------s~E-G~~~~~-~Y-------------  191 (312)
                      ++||+||++..+||..|+..-..+  ++-..+|-..++.++.++.|        +.+ -.+++. .|             
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l--~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  108 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEM--NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVN  108 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHH--HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccC
Confidence            589999999999999998764433  11122222335777777764        222 233444 32             


Q ss_pred             ----------------CC--CCCC---eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          192 ----------------NM--DSIP---AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       192 ----------------~~--~~~P---~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                                      .+  ..+|   ++.|||+ .|+.+..+.|..+++++.+.|.+.|.
T Consensus       109 ~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          109 GENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             STTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             CCchHHHHHHHHhcCCCccCCcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                            23  5678   8999997 69999999999999999888888765

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.11  E-value=7.2e-06  Score=78.55  Aligned_cols=95  Identities=12%  Similarity=0.068  Sum_probs=73.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCC------h-------------------hHHHHH
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDT------S-------------------EGWKVC  188 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds------~-------------------EG~~~~  188 (312)
                      ++|++||++..+||.+|+.+...+   ..+.+-++ .++.++.++.+.      +                   ....++
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~  157 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATW  157 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHH
Confidence            589999999999999999885543   22333233 368888887542      1                   123577


Q ss_pred             HhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          189 SFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       189 ~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +.|.+..+|++.|||+ .|+.+..+.|..+++++.+.|.+.|.+.
T Consensus       158 ~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e~  201 (352)
T 2hyx_A          158 TNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLNDA  201 (352)
T ss_dssp             HHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhhc
Confidence            7899999999999997 6999999999999999999999988653

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.11  E-value=2e-05  Score=69.01  Aligned_cols=98  Identities=9%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      -..+|++++    ..+|.++|+++++||..|+.+...+   ..+.+-++..   +.|..++.+.  ...++..|++..+|
T Consensus       136 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~P  206 (241)
T 3idv_A          136 TKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYP  206 (241)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             cHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCcccC
Confidence            356677666    4568999999999999999996432   2333333332   7888887664  45689999999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +++++..  |+.+. +.|..+.+++++.|.+.+
T Consensus       207 t~~~~~~--g~~~~-~~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          207 TLKIFRK--GRPYD-YNGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             EEEEEET--TEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred             EEEEEEC--CeEEE-ecCCCCHHHHHHHHHhhh
Confidence            9999984  77665 899889988888777654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.09  E-value=3.7e-06  Score=82.10  Aligned_cols=102  Identities=13%  Similarity=0.124  Sum_probs=80.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++ .....++.+||+++++||..|+.|...+   +.+.+-++..+.|..++.+.  ...+++.|++..||++.+
T Consensus         8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~   81 (481)
T 3f8u_A            8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLKI   81 (481)
T ss_dssp             TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEEE
T ss_pred             HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEEE
Confidence            45677766 2223349999999999999999997643   55666666667788876654  567999999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.  .|+.+..+.|..+.+.+++.|.+.+.
T Consensus        82 ~~--~g~~~~~~~G~~~~~~l~~~~~~~~~  109 (481)
T 3f8u_A           82 FR--DGEEAGAYDGPRTADGIVSHLKKQAG  109 (481)
T ss_dssp             EE--TTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred             Ee--CCceeeeecCccCHHHHHHHHHhhcc
Confidence            95  58888889999999988888877764

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.08  E-value=2.6e-06  Score=76.05  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=74.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      -..+|.+++..+ ..+|++||+|+.+||..|+.|..      .+.++..+  ++.|..++++   ...++..|++..+|+
T Consensus       106 ~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p------~l~~la~~~~~v~f~~vd~~---~~~l~~~~~i~~~PT  175 (217)
T 2trc_P          106 TGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRAS---NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             SHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHH---HHTCSTTSCGGGCSE
T ss_pred             CHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHH------HHHHHHHHCCCeEEEEEECC---cHHHHHHCCCCCCCE
Confidence            344566665432 24599999999999999999964      44555544  4788888776   455788999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCCh---HHHHHHHHHHHhhCC
Q 021440          199 VLVIDPITGQKICSWCGMINP---QPLGEMLLPFMDRSP  234 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~---~~fl~~L~~fl~~~~  234 (312)
                      |+|+.  .|+.+..+.|+.+.   +-.++.|..||.++.
T Consensus       176 l~~~~--~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          176 LLVYK--GGELISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEEE--TTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEEE--CCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            99996  69999888886542   222456777776653

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.06  E-value=1.2e-05  Score=68.19  Aligned_cols=95  Identities=11%  Similarity=0.028  Sum_probs=67.9

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCC--------h-------------------hH
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDT--------S-------------------EG  184 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds--------~-------------------EG  184 (312)
                      .+|++||++.++||..|+..-.      .+.++.+   ..+.|+.++.+.        .                   ..
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~------~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~  105 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIG------ELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDET  105 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHH------HHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS
T ss_pred             CCCEEEEEEECCCCccHHHHHH------HHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCc
Confidence            5799999999999999987643      3333333   237777777642        1                   12


Q ss_pred             HHHHHhcCCCCCCeEEEEeCCCCeeEEEe--------cCCCChHHHHHHHHHHHhhCCCC
Q 021440          185 WKVCSFYNMDSIPAVLVIDPITGQKICSW--------CGMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       185 ~~~~~~Y~~~~~P~i~IIdprTGe~v~~~--------~G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      ..++..|.+..+|++.|||+ .|+.+...        .|..+++++.+.|.+.+...+..
T Consensus       106 ~~~~~~~~v~~~P~~~lid~-~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~  164 (188)
T 2cvb_A          106 QEVAKAYRALRTPEVFLFDE-RRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEPP  164 (188)
T ss_dssp             SHHHHHTTCCEESEEEEECT-TCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCC
T ss_pred             chHHHHcCCCCCCeEEEECC-CCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCCCC
Confidence            35677888999999999996 69887661        12336888999999988765543

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.05  E-value=2.5e-05  Score=64.52  Aligned_cols=95  Identities=12%  Similarity=0.100  Sum_probs=63.7

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--------h-hHHHH-HHhc-------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--------S-EGWKV-CSFY-------------  191 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--------~-EG~~~-~~~Y-------------  191 (312)
                      .+||+||++..+||..|...-..+  +.-..+|-..++.++.++.|.        . +-.++ ...|             
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l--~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  107 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQL--QEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVN  107 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHH--HHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeec
Confidence            579999999999999997654332  111122222357777776542        1 22234 1222             


Q ss_pred             ----------------C-----CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          192 ----------------N-----MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       192 ----------------~-----~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                                      .     +..+|++.|||+ .|+.+..+.|..+++++.+.|.+.|.+
T Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  168 (169)
T 2v1m_A          108 GSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLEK  168 (169)
T ss_dssp             STTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred             CccccHHHHHHHhhcCCccCCcccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence                            2     334589999997 699999999999999999988888753

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.05  E-value=1.3e-05  Score=67.24  Aligned_cols=94  Identities=13%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--------Ch-hHHHHH-----------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--------TS-EGWKVC-----------------  188 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--------s~-EG~~~~-----------------  188 (312)
                      .+||+||++.++||.+|+ .-..+  .+-..+|-..++.++.++.+        +. +-.+++                 
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l--~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~  107 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKEL--EALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVN  107 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHH--HHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHH--HHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCC
Confidence            589999999999999999 43221  11122232345888888653        22 122233                 


Q ss_pred             -------------HhcCCCCCC------eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          189 -------------SFYNMDSIP------AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       189 -------------~~Y~~~~~P------~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                                   ..|.+..+|      ++.|||+ .|+.+..+.|..+++++.+.|.+.|.+
T Consensus       108 ~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (171)
T 3cmi_A          108 GGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLKE  169 (171)
T ss_dssp             STTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred             CccchHHHHHHHhccCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence                         235677789      9999997 699999999999999999999888764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.05  E-value=1.6e-05  Score=68.18  Aligned_cols=94  Identities=12%  Similarity=0.048  Sum_probs=66.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHH-HhhccEEEEEeccC--------Chh-HHHHH-Hh-------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQ-IISVNFIFWQEYDD--------TSE-GWKVC-SF-------------  190 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~-~i~~nFIfwq~~~d--------s~E-G~~~~-~~-------------  190 (312)
                      ++||+||++..+||..|...-..+   ..+.+ |-+.++.++.++.|        +++ -.+|+ ..             
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~  123 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETA---TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV  123 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHH---HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence            579999999999999997654332   12222 22235777777665        222 23344 22             


Q ss_pred             ----------------cCCCCCC------eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          191 ----------------YNMDSIP------AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       191 ----------------Y~~~~~P------~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                                      |.+..+|      ++.|||+ .|+.+..+.|..+++++.+.|.+.|.+
T Consensus       124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  186 (190)
T 2vup_A          124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES  186 (190)
T ss_dssp             SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred             CcccccHHHHHHHhhcCCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                            3555678      9999997 699999999999999999999998864

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.01  E-value=1e-05  Score=78.89  Aligned_cols=102  Identities=13%  Similarity=0.099  Sum_probs=78.1

Q ss_pred             ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCC
Q 021440          119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSI  196 (312)
Q Consensus       119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~  196 (312)
                      .+...+|+++.   ...+|.+||+++++||.+|+.+...+   ..+.+.+..  +++|..++.+..   .++..|++..|
T Consensus       356 ~~~~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~---~~~~~~~v~~~  426 (481)
T 3f8u_A          356 VVVAENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN---DVPSPYEVRGF  426 (481)
T ss_dssp             EECTTTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS---CCCTTCCCCSS
T ss_pred             EecccCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch---hhHhhCCCccc
Confidence            34455677665   44689999999999999999997654   455555555  699999988765   47778999999


Q ss_pred             CeEEEEeCCCCe-eEEEecCCCChHHHHHHHHHHH
Q 021440          197 PAVLVIDPITGQ-KICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       197 P~i~IIdprTGe-~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      |++.+++. .|+ .+..+.|..+.++|++.|.+.+
T Consensus       427 Pt~~~~~~-~~~~~~~~~~G~~~~~~l~~~l~~~~  460 (481)
T 3f8u_A          427 PTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREA  460 (481)
T ss_dssp             SEEEEECT-TCTTSCEECCSCCSHHHHHHHHHHHC
T ss_pred             CEEEEEeC-CCeEeeeEeCCCCCHHHHHHHHHHhc
Confidence            99999985 344 2677899999888777776654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.99  E-value=2.3e-05  Score=73.65  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=71.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcc------cCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCC
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRD------TWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRD------vw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      .+|++++    ++++.+||+++++||. |+.+...      +|.  .+.+.+++ ++.|..++.+..  ..+++.|++..
T Consensus        19 ~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~   89 (350)
T 1sji_A           19 KNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDE   89 (350)
T ss_dssp             HHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCS
T ss_pred             HHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCc
Confidence            4466654    4589999999999999 9776443      132  56666665 599998877654  57999999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      ||++.++.  .|+ +..+.|..+.+.+++.|.+.
T Consensus        90 ~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~~  120 (350)
T 1sji_A           90 EGSLYVLK--GDR-TIEFDGEFAADVLVEFLLDL  120 (350)
T ss_dssp             TTEEEEEE--TTE-EEEECSCCCHHHHHHHHHTT
T ss_pred             cceEEEEE--CCc-EEEecCCCCHHHHHHHHHHh
Confidence            99999994  577 56789998888766555443

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.99  E-value=2.2e-05  Score=56.68  Aligned_cols=73  Identities=11%  Similarity=0.189  Sum_probs=56.5

Q ss_pred             EEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCC-
Q 021440          139 LLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMI-  217 (312)
Q Consensus       139 LLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~-  217 (312)
                      +.|+++.+||.+|+.+...+   +++.+-.+.++.+..++     ...++..|++..+|++.|    .|+.+..  |.. 
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G~~~~~--G~~~   67 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV----DGELKIM--GRVA   67 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TTEEEEC--SSCC
T ss_pred             cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE----CCEEEEc--CCCC
Confidence            46889999999999997655   45555556678888886     456888999999999998    4876644  887 


Q ss_pred             ChHHHHHH
Q 021440          218 NPQPLGEM  225 (312)
Q Consensus       218 ~~~~fl~~  225 (312)
                      +.+++.+.
T Consensus        68 ~~~~l~~~   75 (77)
T 1ilo_A           68 SKEEIKKI   75 (77)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            77776654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.98  E-value=1.3e-05  Score=65.91  Aligned_cols=90  Identities=8%  Similarity=-0.092  Sum_probs=62.9

Q ss_pred             cCC-eEEEEee-cCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChh---------------------HHHH
Q 021440          135 QDK-WLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSE---------------------GWKV  187 (312)
Q Consensus       135 ~~K-wLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~E---------------------G~~~  187 (312)
                      .+| |+||++. .+||..|...-      +.+.++.+    .++.++.++.|+++                     ...+
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  107 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAV  107 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHH
T ss_pred             cCCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHH
Confidence            455 9999998 99999998764      33444433    35777777777643                     4567


Q ss_pred             HHhcCCC----CCC--eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          188 CSFYNMD----SIP--AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       188 ~~~Y~~~----~~P--~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +..|.+.    .+|  ++.|||+ .|+.+..+.|..+.+..++.+.+.|+
T Consensus       108 ~~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~  156 (160)
T 1xvw_A          108 SQAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGEVRDQRLWTDALA  156 (160)
T ss_dssp             HHHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             HHHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            7888886    889  9999997 69999988887644333344444433

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.98  E-value=6.9e-06  Score=64.96  Aligned_cols=86  Identities=9%  Similarity=-0.005  Sum_probs=61.0

Q ss_pred             HHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCCh--hHHHHHHhcCCCCCCeEEEEeC
Q 021440          127 KAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTS--EGWKVCSFYNMDSIPAVLVIDP  204 (312)
Q Consensus       127 ~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~--EG~~~~~~Y~~~~~P~i~IIdp  204 (312)
                      +++..|+..+|..+|+++.+||..|+.|..      .+.++. +.|-+..++.+..  +...++..|++..+|++.|   
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p------~~~~~a-~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i---   72 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKE------LFGAAF-DQVPYVECSPNGPGTPQAQECTEAGITSYPTWII---   72 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHHH------HHGGGG-GGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEE---
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHHH------HHHHHH-HhCCEEEEecccccchhHHHHHHcCCeEeCEEEE---
Confidence            456667777888899999999999999953      222222 3333445554444  5678999999999999777   


Q ss_pred             CCCeeEEEecCCCChHHHHHHH
Q 021440          205 ITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       205 rTGe~v~~~~G~~~~~~fl~~L  226 (312)
                       .|+.   +.|..+.+++.+.+
T Consensus        73 -~G~~---~~G~~~~~~l~~~~   90 (106)
T 3kp8_A           73 -NGRT---YTGVRSLEALAVAS   90 (106)
T ss_dssp             -TTEE---EESCCCHHHHHHHH
T ss_pred             -CCEE---ecCCCCHHHHHHHh
Confidence             4763   78988887755443

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.97  E-value=2.7e-05  Score=67.03  Aligned_cols=94  Identities=10%  Similarity=-0.012  Sum_probs=68.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-----------------------HHHHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-----------------------GWKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-----------------------G~~~~~~  190 (312)
                      .+||+||++. .+||..|...-..+=  ....+|-..++.++.++.|+.+                       ...++..
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  121 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFS--KLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQA  121 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHH--HTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHH--HHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHH
Confidence            4799999999 999999987644321  1112222236777777777532                       2346677


Q ss_pred             cCCC-----CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHHh
Q 021440          191 YNMD-----SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFMD  231 (312)
Q Consensus       191 Y~~~-----~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl~  231 (312)
                      |.+.     .+|++.|||+ .|+.+..+.|..    +++++++.|...+.
T Consensus       122 ~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          122 AGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             HTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             hCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            8887     8999999997 699998888764    67888888888765

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=97.96  E-value=8.9e-06  Score=65.89  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChh------------------------HHH
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSE------------------------GWK  186 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~E------------------------G~~  186 (312)
                      ++|++||++..+||.+|...-      +.+.++.+    .++.++.++.|...                        ...
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  104 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE  104 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred             CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence            679999999999999998874      45555554    35777777776422                        135


Q ss_pred             HHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       187 ~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      ++..|.+..+|++.|||+ .|+.+....   .++++.+.|
T Consensus       105 ~~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l  140 (143)
T 4fo5_A          105 LYKKYDLRKGFKNFLIND-EGVIIAANV---TPEKLTEIL  140 (143)
T ss_dssp             HHHHTTGGGCCCEEEECT-TSBEEEESC---CHHHHHHHH
T ss_pred             HHHHcCCCCCCcEEEECC-CCEEEEccC---CHHHHHHHH
Confidence            677899999999999997 699876643   455544433

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=97.96  E-value=2.1e-05  Score=67.75  Aligned_cols=93  Identities=10%  Similarity=0.024  Sum_probs=67.9

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------------HHHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------------G~~~  187 (312)
                      .+|++||++. .+||..|...-..+=  .-..+|-..++.++.++.|+++                          ...+
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  109 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFD--KRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSI  109 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHH--HHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHH
Confidence            6799999999 999999987754331  1122233446888888777643                          2356


Q ss_pred             HHhcCCC-----CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHH
Q 021440          188 CSFYNMD-----SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFM  230 (312)
Q Consensus       188 ~~~Y~~~-----~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl  230 (312)
                      ++.|.+.     .+|++.|||+ .|+.+..+.|..    +++++++.|....
T Consensus       110 ~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          110 SRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            7788887     8999999997 699998888865    5677777777665

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.96  E-value=1.4e-05  Score=75.03  Aligned_cols=101  Identities=11%  Similarity=0.151  Sum_probs=75.2

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      +-..+|++..   ...+|.+||+++++||..|+.|...+   ..+.+.++.  +++|..++.+...    +..|++..||
T Consensus       254 l~~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~P  323 (361)
T 3uem_A          254 LVGKNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANE----VEAVKVHSFP  323 (361)
T ss_dssp             ECTTTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCB----CSSCCCCSSS
T ss_pred             eecCchhhhc---ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccc----hhhcCCcccC
Confidence            3345677655   45789999999999999999997543   344444544  4999999887766    5689999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ++.++..-.|+.+..+.|..+.++|+    +||+++.
T Consensus       324 t~~~~~~~~~~~~~~~~G~~~~~~l~----~~l~~~~  356 (361)
T 3uem_A          324 TLKFFPASADRTVIDYNGERTLDGFK----KFLESGG  356 (361)
T ss_dssp             EEEEECSSSSCCCEECCSCSSHHHHH----HHHTTTS
T ss_pred             eEEEEECCCCcceeEecCCCCHHHHH----HHHHhcC
Confidence            99999754456777889988887755    5555543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.95  E-value=2.5e-05  Score=66.87  Aligned_cols=96  Identities=14%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC---------hhHHHHHH-h--------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT---------SEGWKVCS-F--------------  190 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds---------~EG~~~~~-~--------------  190 (312)
                      ++|++||++..+||.+|...-..+  .+-..+|=..++.++.++.|.         .+-.+++. .              
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l--~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~  122 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETA--TTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVN  122 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHH--HHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCS
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHH--HHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccC
Confidence            679999999999999999864322  111222223357777776541         12222222 1              


Q ss_pred             ------------------cCCCCCC---eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          191 ------------------YNMDSIP---AVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       191 ------------------Y~~~~~P---~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                                        |.+..+|   ++.|||+ .|+.+..+.|..+++++.+.|.+.|...
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~~~  185 (187)
T 3dwv_A          123 GENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLGSA  185 (187)
T ss_dssp             CC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC---
T ss_pred             CcchhHHHHHHHhhcCCccCCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence                              1234567   9999997 6999999999999999999999887643

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=97.95  E-value=3e-05  Score=66.08  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=69.5

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-----------------------HHHHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-----------------------GWKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-----------------------G~~~~~~  190 (312)
                      .+||+||++. .+||..|...-..+  .....+|=..++.++.++.|.++                       ...++..
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  107 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDV--QKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQ  107 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHH
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHH
Confidence            5799999999 99999999764432  11122222336778888777642                       2356677


Q ss_pred             cCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHHhh
Q 021440          191 YNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFMDR  232 (312)
Q Consensus       191 Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl~~  232 (312)
                      |.+.      .+|++.|||+ .|+.+..+.|..    +++++++.|......
T Consensus       108 ~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~  158 (187)
T 1we0_A          108 FDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKAAQYV  158 (187)
T ss_dssp             TTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHHHHHH
T ss_pred             hCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhhh
Confidence            8886      8999999997 699998888764    688898888887753

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.93  E-value=1.4e-05  Score=64.72  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=71.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      -..+|.+++..+ ..+++++|+++.+||.+|+.|.      +.+.++.++  +..|+.++++..     +..|.+.+.|+
T Consensus         9 t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d~~-----~~~~~v~~~PT   76 (118)
T 3evi_A            9 SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVNSC-----IQHYHDNCLPT   76 (118)
T ss_dssp             CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGGGT-----STTCCGGGCSE
T ss_pred             CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhHHh-----HHHCCCCCCCE
Confidence            345666665432 2345999999999999999996      455555554  367888888753     57899999999


Q ss_pred             EEEEeCCCCeeEEEecCCCCh--HHH-HHHHHHHHhhC
Q 021440          199 VLVIDPITGQKICSWCGMINP--QPL-GEMLLPFMDRS  233 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~--~~f-l~~L~~fl~~~  233 (312)
                      ++++-  .|+.+..+.|..+-  .+| .+.|..+|.+.
T Consensus        77 ~~~fk--~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           77 IFVYK--NGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEEEE--TTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEEEE--CCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            99997  59999998886421  122 55677777654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.92  E-value=4.6e-05  Score=72.55  Aligned_cols=99  Identities=14%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcc------cCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRD------TWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNM  193 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRD------vw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~  193 (312)
                      -..+|++++    ++++++||+++++||..| .+++.      +|  +.+.+.++. ++.|..++.+.  ...+|+.|++
T Consensus        19 t~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~--e~~a~~~~~~~v~~~~Vd~~~--~~~l~~~~~V   89 (367)
T 3us3_A           19 NAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELIL--ELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGL   89 (367)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHH--HHHHHHHTTTTEEEEEEETTT--THHHHHHHTC
T ss_pred             CHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHH--HHHHHHhhcCCceEEEEeCcc--cHHHHHHcCC
Confidence            456788877    358999999999999886 55442      22  344555544 58899987774  4579999999


Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      ..||+|.++.  .|+.+ .+.|..+++.+++-|.+.+.
T Consensus        90 ~~~PTl~~f~--~G~~~-~y~G~~~~~~i~~~i~~~~~  124 (367)
T 3us3_A           90 TEEDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE  124 (367)
T ss_dssp             CSTTEEEEEE--TTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             CcCceEEEEE--CCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence            9999999997  37754 78999999988887777653

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.87  E-value=7e-05  Score=60.69  Aligned_cols=86  Identities=13%  Similarity=0.092  Sum_probs=65.6

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhH--HHHHHhcCCC-CCCeEEEEeCCCC
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEG--WKVCSFYNMD-SIPAVLVIDPITG  207 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG--~~~~~~Y~~~-~~P~i~IIdprTG  207 (312)
                      ..+++|.++|+.|++||.+|.++.+      .+.++.+ .+.-|+.++++....  ..++..|++. ..|+++++-  .|
T Consensus        20 ii~~~~~vvi~khatwCgpc~~~~~------~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k--~G   91 (112)
T 3iv4_A           20 VIEENKYVFVLKHSETCPISANAYD------QFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFV--NG   91 (112)
T ss_dssp             HHHHCSEEEEEEECTTCHHHHHHHH------HHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEE--TT
T ss_pred             HHhcCCCEEEEEECCcCHhHHHHHH------HHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEE--CC
Confidence            3344999999999999999999964      4455553 456777777775443  4589999998 599999996  59


Q ss_pred             eeEEE-ecCCCChHHHHHH
Q 021440          208 QKICS-WCGMINPQPLGEM  225 (312)
Q Consensus       208 e~v~~-~~G~~~~~~fl~~  225 (312)
                      +.++. -.|.++.+.+.+.
T Consensus        92 ~~v~~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           92 EMVWNRDHGDINVSSLAQA  110 (112)
T ss_dssp             EEEEEEEGGGCSHHHHHHH
T ss_pred             EEEEEeeccccCHHHHHHh
Confidence            99987 4567888866544

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.86  E-value=7.1e-05  Score=65.53  Aligned_cols=86  Identities=5%  Similarity=0.005  Sum_probs=66.9

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      ..+++++|++.++||..|+.+.      +.+.++.++  ++.|..++.+  +...++..|++..+|++.|    .|+ +.
T Consensus       134 ~~~~~~~v~F~a~wC~~C~~~~------~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~----~G~-~~  200 (229)
T 2ywm_A          134 VDIPIEIWVFVTTSCGYCPSAA------VMAWDFALANDYITSKVIDAS--ENQDLAEQFQVVGVPKIVI----NKG-VA  200 (229)
T ss_dssp             CCSCEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEEGG--GCHHHHHHTTCCSSSEEEE----GGG-TE
T ss_pred             cCCCeEEEEEECCCCcchHHHH------HHHHHHHHHCCCeEEEEEECC--CCHHHHHHcCCcccCEEEE----CCE-EE
Confidence            4456669999999999999996      444444443  5788877655  4556899999999999998    477 56


Q ss_pred             EecCCCChHHHHHHHHHHHhh
Q 021440          212 SWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       212 ~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      .+.|..+.+++.+.|.+.+..
T Consensus       201 ~~~G~~~~~~l~~~l~~~~~~  221 (229)
T 2ywm_A          201 EFVGAQPENAFLGYIMAVYEK  221 (229)
T ss_dssp             EEESCCCHHHHHHHHHHHHHH
T ss_pred             EeeCCCCHHHHHHHHHHHhhh
Confidence            689999999999888887754

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.85  E-value=3.2e-05  Score=63.97  Aligned_cols=87  Identities=14%  Similarity=0.072  Sum_probs=62.4

Q ss_pred             cCCeEEEEeecCCCcc-cchhhcccCCCHHHHHHhhc-------cEEEEEeccCC----hhH------------------
Q 021440          135 QDKWLLVNLQSTKEFS-SLMLNRDTWGNEAVSQIISV-------NFIFWQEYDDT----SEG------------------  184 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~-c~~lnRDvw~~~~V~~~i~~-------nFIfwq~~~ds----~EG------------------  184 (312)
                      .+||+||++..+||.+ |+..-.      .+.++.++       ++.++.++.|.    ++.                  
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~------~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~  107 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLL------ALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGS  107 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHH------HHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCC
T ss_pred             CCCEEEEEEECCCCcchhHHHHH------HHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCC
Confidence            6899999999999998 987643      34444331       57777777552    221                  


Q ss_pred             ----HHHHHhcC---------------CCCCCeEEEEeCCCCeeEEEecCCC--ChHHHHHHHHHH
Q 021440          185 ----WKVCSFYN---------------MDSIPAVLVIDPITGQKICSWCGMI--NPQPLGEMLLPF  229 (312)
Q Consensus       185 ----~~~~~~Y~---------------~~~~P~i~IIdprTGe~v~~~~G~~--~~~~fl~~L~~f  229 (312)
                          ..+++.|.               +..+|++.|||  .|+.+..+.|..  +++++++.|.+.
T Consensus       108 ~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          108 PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence                24444444               34679999999  699999998887  888888887653

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.84  E-value=3.5e-05  Score=65.35  Aligned_cols=91  Identities=11%  Similarity=0.005  Sum_probs=59.0

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--------Ch-hHHHHHHhcC-------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--------TS-EGWKVCSFYN-------------  192 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--------s~-EG~~~~~~Y~-------------  192 (312)
                      ++||+||++..+||..|...-..+  .+-..+|-..++.++.++.|        +. +-.+++..|+             
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l--~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~  123 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQL--VDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNG  123 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHH--HHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCC
Confidence            579999999999999997764332  11122222235777777654        11 2223333221             


Q ss_pred             -----------------------CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          193 -----------------------MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       193 -----------------------~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                                             +..+|++.|||+ .|+.+..+.|..+++++.+.|.+
T Consensus       124 ~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          124 DDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             TTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSGG
T ss_pred             cchhHHHHHhhccCCCCCcccccccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHH
Confidence                                   223599999997 69999999998888887665543

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.81  E-value=9.8e-05  Score=62.53  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=66.4

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccC--------C-hhHHHHHHh-cCCC---------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDD--------T-SEGWKVCSF-YNMD---------  194 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~d--------s-~EG~~~~~~-Y~~~---------  194 (312)
                      ++|++||++..+||.+|...-..+   ..+.+-+ ..++.++.++.+        + .+-.++++. |.+.         
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~  113 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGL---KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKI  113 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHH---HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeec
Confidence            689999999999999999864332   2222222 335888888754        2 233456666 4431         


Q ss_pred             -----------------CCCe----EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          195 -----------------SIPA----VLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       195 -----------------~~P~----i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                                       .+|.    ..|||+ .|+.+..+.|..+++++.+.|.+.|++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~~  171 (180)
T 3kij_A          114 LGSEGEPAFRFLVDSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVRQ  171 (180)
T ss_dssp             SSTTCCHHHHHHHHHHTCCCSSTTCEEEECT-TSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred             cCccccHHHHHHHhcCCCCccccceEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence                             2566    899997 699999999999998888888777754

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.80  E-value=6.5e-05  Score=64.28  Aligned_cols=93  Identities=12%  Similarity=0.089  Sum_probs=67.3

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------------HHHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------------G~~~  187 (312)
                      .+||+||++. .+||..|...-..+  .....+|-..++.++.++.|+.+                          ...+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  107 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI  107 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHH
Confidence            5799999999 99999999764433  11222333357888888887644                          1356


Q ss_pred             HHhcCCC-----CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHH
Q 021440          188 CSFYNMD-----SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFM  230 (312)
Q Consensus       188 ~~~Y~~~-----~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl  230 (312)
                      +..|.+.     .+|++.|||+ .|+.+..+.|..    +.+++++.|....
T Consensus       108 ~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          108 ARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            7788887     8999999997 699888877742    4677777777665

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=97.79  E-value=7.3e-05  Score=66.11  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=69.2

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------------HHHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------------G~~~  187 (312)
                      .+||+||++. .+||+.|...-..+  .....+|-..++.++.++.|+.+                          ...+
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i  132 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI  132 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHH
Confidence            4699999999 99999999764433  11223333457888888877643                          2356


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHHhh
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFMDR  232 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl~~  232 (312)
                      +..|.+.      .+|++.|||+ .|+.+..+.|..    +.+++++.|......
T Consensus       133 ~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~~  186 (220)
T 1zye_A          133 SRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQFV  186 (220)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence            7788887      8999999997 699888877753    568888888876643

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.78  E-value=5.6e-05  Score=65.44  Aligned_cols=93  Identities=12%  Similarity=0.107  Sum_probs=67.4

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------------HHHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------------G~~~  187 (312)
                      .+||+||++. .+||+.|...-..+  .+-..+|-..++.++.++.|+.+                          ...+
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l--~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  112 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI  112 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHH
Confidence            5799999999 99999999765432  11222333346888888887643                          2356


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFM  230 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl  230 (312)
                      +..|.+.      .+|++.|||+ .|+.+..+.|..    +.+++++.|....
T Consensus       113 ~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          113 MKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            6778887      8999999997 699888877753    4588888877765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.75  E-value=0.00012  Score=63.76  Aligned_cols=92  Identities=16%  Similarity=0.224  Sum_probs=70.7

Q ss_pred             HcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE-E
Q 021440          134 AQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI-C  211 (312)
Q Consensus       134 ~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v-~  211 (312)
                      .+++.+||+++++ ||..|+.+...+   +++.+. ..++.|..++.+.++...++..|++..+|++.|+.  .|+.. .
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~~~~~~~---~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~   93 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCDQLKQLV---QELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ--DGKDFGV   93 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHH---HHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE--TTBCCSE
T ss_pred             cCCCeEEEEEecCCCCchhHHHHHHH---HHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc--CCceeeE
Confidence            4567788999999 999999996432   223332 35788999999988889999999999999999995  36553 5


Q ss_pred             EecCCCChHHHHHHHHHHHh
Q 021440          212 SWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       212 ~~~G~~~~~~fl~~L~~fl~  231 (312)
                      .+.|....+++...+...++
T Consensus        94 ~~~G~~~~~~l~~~l~~~l~  113 (226)
T 1a8l_A           94 RYFGLPAGHEFAAFLEDIVD  113 (226)
T ss_dssp             EEESCCCTTHHHHHHHHHHH
T ss_pred             EEeccCcHHHHHHHHHHHHh
Confidence            67888877777777766664

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.75  E-value=7e-05  Score=64.13  Aligned_cols=86  Identities=13%  Similarity=-0.022  Sum_probs=61.4

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcC---CCCCCeEEEEeCCCCe
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYN---MDSIPAVLVIDPITGQ  208 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~---~~~~P~i~IIdprTGe  208 (312)
                      ..+|.++|++..+||.+|+.+.      |.+.++..+  ++.|..++.|  +...++..|.   +.++|+++|+|. .|+
T Consensus        52 ~~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--~~~~~~~~~~~~~v~~iPt~i~~~~-~G~  122 (167)
T 1z6n_A           52 IERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--RAEDDLRQRLALERIAIPLVLVLDE-EFN  122 (167)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--HHHHHTTTTTTCSSCCSSEEEEECT-TCC
T ss_pred             hCCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--CCHHHHHHHHHcCCCCcCeEEEECC-CCC
Confidence            3579999999999999999984      445555443  5777776554  4566777776   899999999996 578


Q ss_pred             eEEEecCCCChHHHHHHHHHHH
Q 021440          209 KICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       209 ~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      .+..|.|  .|....+.+.++.
T Consensus       123 ~~~~~g~--~p~~~~~~i~~~~  142 (167)
T 1z6n_A          123 LLGRFVE--RPQAVLDGGPQAL  142 (167)
T ss_dssp             EEEEEES--SCHHHHHHCHHHH
T ss_pred             EEEEEcC--CCHHHHHhHHHHH
Confidence            8777743  3444445444443

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.75  E-value=0.00015  Score=58.85  Aligned_cols=88  Identities=14%  Similarity=0.057  Sum_probs=68.2

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCC--CCeEEEEeCCCCe
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDS--IPAVLVIDPITGQ  208 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~--~P~i~IIdprTGe  208 (312)
                      ...+.++|++.++ |.+|+++.      +.+.++.+   ..+.|..+|.+  +..+++..|++.+  .|+++|++...|+
T Consensus        21 ~~~~pv~v~f~a~-~~~c~~~~------p~l~~~A~~~~gk~~f~~vd~d--~~~~~a~~~gi~~~~iPtl~i~~~~~g~   91 (133)
T 2djk_A           21 SAGIPLAYIFAET-AEERKELS------DKLKPIAEAQRGVINFGTIDAK--AFGAHAGNLNLKTDKFPAFAIQEVAKNQ   91 (133)
T ss_dssp             HTTSCEEEEECSC-SSSHHHHH------HHHHHHHHSSTTTSEEEEECTT--TTGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred             cCCCCEEEEEecC-hhhHHHHH------HHHHHHHHHhCCeEEEEEEchH--HhHHHHHHcCCCcccCCEEEEEecCcCc
Confidence            5678999999998 78999774      44555554   45888888876  4456899999988  9999999853466


Q ss_pred             eEEEec--CCCChHHHHHHHHHHHh
Q 021440          209 KICSWC--GMINPQPLGEMLLPFMD  231 (312)
Q Consensus       209 ~v~~~~--G~~~~~~fl~~L~~fl~  231 (312)
                      .. ...  |.++.+.+.+.|.+|++
T Consensus        92 ~~-~~~~~g~~~~~~l~~fi~~~l~  115 (133)
T 2djk_A           92 KF-PFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             BC-CCCSSSCCCHHHHHHHHHHHHH
T ss_pred             cc-CCCCccccCHHHHHHHHHHHHc
Confidence            63 554  99999998888888886

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.73  E-value=4e-05  Score=65.15  Aligned_cols=93  Identities=10%  Similarity=0.054  Sum_probs=62.7

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--------Ch-hHHHHHHh-cC------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--------TS-EGWKVCSF-YN------------  192 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--------s~-EG~~~~~~-Y~------------  192 (312)
                      ++||+||++..+||.+|...-..+  .+-..+|-+.++.++.++.+        +. +-.++++. |+            
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l--~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~  125 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRAL--QQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT  125 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHH--HHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccC
Confidence            579999999999999999754332  11122233345778877764        22 22345444 22            


Q ss_pred             -----------CCCCC-------eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          193 -----------MDSIP-------AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       193 -----------~~~~P-------~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                                 +..+|       ++.|||+ .|+.+..+.|..+++++.+.|.+.|
T Consensus       126 g~~~~~~~~~~~~~~P~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          126 GTGAHPAFKYLAQTSGKEPTWNFWKYLVAP-DGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             STTSCHHHHHHHHHHSCCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             CccchhhhhhhhhcCCCccccceeEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                       22467       8999997 6999999999889988877776543

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.72  E-value=0.00019  Score=62.10  Aligned_cols=96  Identities=10%  Similarity=0.022  Sum_probs=65.6

Q ss_pred             cCCeEEEEeecCCCcc-cchhhcccCCCHHHHHHhh----ccEEEEEeccC----Chh----------------------
Q 021440          135 QDKWLLVNLQSTKEFS-SLMLNRDTWGNEAVSQIIS----VNFIFWQEYDD----TSE----------------------  183 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~-c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~d----s~E----------------------  183 (312)
                      .+||+||++..+||.+ |...-..+   ..+.+-+.    .++.++.++.|    +++                      
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l---~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~  116 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKL---GLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDE  116 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHH---HHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHH
Confidence            5799999999999998 98753322   11222222    25655556555    221                      


Q ss_pred             HHHHHHhcCCC-CC---------------CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          184 GWKVCSFYNMD-SI---------------PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       184 G~~~~~~Y~~~-~~---------------P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ...+++.|.+. ..               |++.|||+ .|+.+..+.|..+++++.+.|.+.|+...
T Consensus       117 ~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l~  182 (200)
T 2b7k_A          117 VKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSYV  182 (200)
T ss_dssp             HHHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            23566677764 33               37899997 69999999998899999999999988743

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=97.71  E-value=2.6e-05  Score=80.85  Aligned_cols=97  Identities=13%  Similarity=0.171  Sum_probs=68.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++    +.++.+||+++++||..|+.|...+   +.+.+-+...+.|..++.+..  ..+++.|++..||++.+
T Consensus       123 ~~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~  193 (780)
T 3apo_A          123 RREFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFI  193 (780)
T ss_dssp             HHHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTC--SSCC--------CEEEE
T ss_pred             hHhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCc--HHHHHHcCCceeeeEEE
Confidence            34566666    7799999999999999999997654   456666666788888877654  56889999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +.  .|+.+..+.|..+.+.+++.|.+.
T Consensus       194 ~~--~g~~~~~~~G~~~~~~l~~~l~~~  219 (780)
T 3apo_A          194 FR--SGMAAVKYNGDRSKESLVAFAMQH  219 (780)
T ss_dssp             EC--TTSCCEECCSCSCHHHHHHHHHTT
T ss_pred             Ee--CCcEeeEecCCCCHHHHHHHHHHh
Confidence            84  588788899988887766655443

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=97.70  E-value=0.0001  Score=64.76  Aligned_cols=98  Identities=10%  Similarity=0.072  Sum_probs=69.0

Q ss_pred             cCCe-EEEEeecCCCcccchhhcccCCCHHHHH-HhhccEEEEEeccCCh---------------------------hHH
Q 021440          135 QDKW-LLVNLQSTKEFSSLMLNRDTWGNEAVSQ-IISVNFIFWQEYDDTS---------------------------EGW  185 (312)
Q Consensus       135 ~~Kw-LLVniq~~~~f~c~~lnRDvw~~~~V~~-~i~~nFIfwq~~~ds~---------------------------EG~  185 (312)
                      .+|+ +||++..+||..|...-..+   .++.+ |-..++.|+.++.+..                           ...
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~  133 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREAL---AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQ  133 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHH---HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTC
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCcc
Confidence            4787 99999999999998775433   22222 2233588888887532                           134


Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEEec---------CCCChHHHHHHHHHHHhhCCCC
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICSWC---------GMINPQPLGEMLLPFMDRSPRK  236 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~---------G~~~~~~fl~~L~~fl~~~~~~  236 (312)
                      .++..|.+..+|++.|||+ .|+.+..+.         |..+.+++.+.|...+...+..
T Consensus       134 ~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~  192 (218)
T 3u5r_E          134 SVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVG  192 (218)
T ss_dssp             HHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCCC
Confidence            6778899999999999997 688875521         2345788888888888766554

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.70  E-value=0.0001  Score=64.87  Aligned_cols=93  Identities=14%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------HHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------~~~  187 (312)
                      .+||+||++. .+||+.|...-..+  .+...+|-..++.++.++.|+++.                          ..+
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  128 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSI  128 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHH
Confidence            5799999999 99999998875432  122233334578888888776432                          346


Q ss_pred             HHhcCCC-----CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHH
Q 021440          188 CSFYNMD-----SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFM  230 (312)
Q Consensus       188 ~~~Y~~~-----~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl  230 (312)
                      +..|.+.     .+|++.|||+ .|+.+..+.|..    +.+++++.|....
T Consensus       129 ~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          129 SKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            6777777     7999999997 699888876643    4788888887765

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.69  E-value=0.00016  Score=63.46  Aligned_cols=94  Identities=9%  Similarity=0.033  Sum_probs=63.1

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--------C-hhHHHHHH------hcCC------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--------T-SEGWKVCS------FYNM------  193 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--------s-~EG~~~~~------~Y~~------  193 (312)
                      ++|++|||+..+||.+|...-..+  ++-..+|=..++.++.++.+        + .+-.+|+.      .|.+      
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l--~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~  123 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQM--NELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE  123 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHH--HHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEE
Confidence            679999999999999998742221  11112222345777777664        1 12234443      2221      


Q ss_pred             -----------------------------------------------CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          194 -----------------------------------------------DSIPAVLVIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       194 -----------------------------------------------~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                                                                     ...|+..|||+ .|+.+..|.|..+++++.+.|
T Consensus       124 d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~-~G~i~~~~~g~~~~~~l~~~I  202 (208)
T 2f8a_A          124 KCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP-DGVPLRRYSRRFQTIDIEPDI  202 (208)
T ss_dssp             CCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHH
T ss_pred             EeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC-CCcEEEEeCCCCCHHHHHHHH
Confidence                                                           22388999996 699999999999999988888


Q ss_pred             HHHHh
Q 021440          227 LPFMD  231 (312)
Q Consensus       227 ~~fl~  231 (312)
                      .+.|.
T Consensus       203 ~~ll~  207 (208)
T 2f8a_A          203 EALLS  207 (208)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            87764

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.69  E-value=7.7e-05  Score=63.57  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=60.0

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--------h-hHHHHHHhcCC------------
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--------S-EGWKVCSFYNM------------  193 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--------~-EG~~~~~~Y~~------------  193 (312)
                      ++||+||++..+||..|...-..+  .+-..+|-..++.++.++.|.        + +-.++++.|++            
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l--~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  125 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQL--VDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNG  125 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCchHHHHHHH--HHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCC
Confidence            579999999999999997653322  111122223357777776542        1 22334433322            


Q ss_pred             ------------------------CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          194 ------------------------DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       194 ------------------------~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                                              ..+|++.|||+ .|+.+..+.|..+++++.+.|.+.
T Consensus       126 ~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          126 DDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             TTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT-TSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             hhhhHHHHHHHhhcccccccCCcccccceEEEECC-CCCEEEeeCCCCCHHHHHHHHHHh
Confidence                                    12489999997 699999999988888887777654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=96.86  E-value=5.7e-06  Score=68.16  Aligned_cols=97  Identities=9%  Similarity=0.003  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCCh--hHHHHH----------------
Q 021440          128 AKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTS--EGWKVC----------------  188 (312)
Q Consensus       128 A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~--EG~~~~----------------  188 (312)
                      ....+.-++|++||++..+||..|+.+-..+ ...-..++- +.++.++.++.+..  ...++.                
T Consensus        25 ~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l-~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~  103 (159)
T 2ls5_A           25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPFI-EKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGAD  103 (159)
Confidence            3444445789999999999999998875543 221112232 45677777776643  223343                


Q ss_pred             --HhcC--CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          189 --SFYN--MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       189 --~~Y~--~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                        ..|.  +..+|++.|||+ .|+.+..+.|. +++++.+.|.
T Consensus       104 ~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~-~~~~l~~~l~  144 (159)
T 2ls5_A          104 IFAKYALRDAGITRNVLIDR-EGKIVKLTRLY-NEEEFASLVQ  144 (159)
Confidence              3333  345999999997 69988888774 4444444333

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.67  E-value=0.00024  Score=58.80  Aligned_cols=93  Identities=8%  Similarity=0.006  Sum_probs=60.9

Q ss_pred             cCCeEEEEeecCCCc-ccchhhcccCCCHHHHHHhhc---cEEEEEeccC----Chh-HHHHHHh---------------
Q 021440          135 QDKWLLVNLQSTKEF-SSLMLNRDTWGNEAVSQIISV---NFIFWQEYDD----TSE-GWKVCSF---------------  190 (312)
Q Consensus       135 ~~KwLLVniq~~~~f-~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~d----s~E-G~~~~~~---------------  190 (312)
                      .+||+||++..+||. .|...-..+   ..+.+-+++   ++.++.++.|    +++ -.+++..               
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~  108 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYS  108 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSC
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCC
Confidence            579999999999999 897643322   222222322   2666666554    222 1122211               


Q ss_pred             ----------------------cCCCCCCeEEEEeCCCCeeEEEecCCC--ChHHHHHHHHHHHh
Q 021440          191 ----------------------YNMDSIPAVLVIDPITGQKICSWCGMI--NPQPLGEMLLPFMD  231 (312)
Q Consensus       191 ----------------------Y~~~~~P~i~IIdprTGe~v~~~~G~~--~~~~fl~~L~~fl~  231 (312)
                                            |.+...|++.|||+ .|+.+..+.|..  +++++++.|.+.+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          109 QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence                                  33456899999997 699999999875  57889998888764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.64  E-value=6.3e-05  Score=73.95  Aligned_cols=98  Identities=11%  Similarity=0.097  Sum_probs=72.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ..+|++..   ...+|.+||+++++||..|+.|...+   ..+.+-+.   .+++|..++.+..+   ... |.+..||+
T Consensus       365 ~~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~---~~~-~~v~~~Pt  434 (504)
T 2b5e_A          365 GKNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTEND---VRG-VVIEGYPT  434 (504)
T ss_dssp             TTTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCC---CSS-CCCSSSSE
T ss_pred             cccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccc---ccc-CCceecCe
Confidence            44566654   55789999999999999999997644   23444333   37999999876544   223 99999999


Q ss_pred             EEEEeCCCCee--EEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQK--ICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~--v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.++ + .|+.  +..+.|..+.++|++.|.+.+.
T Consensus       435 ~~~~-~-~G~~~~~~~~~G~~~~~~l~~~i~~~~~  467 (504)
T 2b5e_A          435 IVLY-P-GGKKSESVVYQGSRSLDSLFDFIKENGH  467 (504)
T ss_dssp             EEEE-C-CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             EEEE-e-CCceecceEecCCCCHHHHHHHHHhcCC
Confidence            9999 3 4765  5668898898888777776543

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=97.59  E-value=7.2e-05  Score=74.38  Aligned_cols=103  Identities=10%  Similarity=0.094  Sum_probs=70.6

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--------ccEEEEEeccCChhHHHHHHhcCCC
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--------VNFIFWQEYDDTSEGWKVCSFYNMD  194 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--------~nFIfwq~~~ds~EG~~~~~~Y~~~  194 (312)
                      .+|++++  ++..+|.+||+++.+||.+|+.|...+   ..+.+-+.        .++.|..++.+.  ...++..|++.
T Consensus        31 ~~F~~~l--~~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~--~~~la~~y~V~  103 (470)
T 3qcp_A           31 DDFSRVH--RVAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCAS--EVDLCRKYDIN  103 (470)
T ss_dssp             SCGGGTC--TTGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTT--CHHHHHHTTCC
T ss_pred             HHHHHHH--HhCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCC--CHHHHHHcCCC
Confidence            3455444  234578999999999999999997543   33333333        148899998775  36799999999


Q ss_pred             CCCeEEEEeCCCCeeEEEecC------------CCChHHHHHHHHHHHhh
Q 021440          195 SIPAVLVIDPITGQKICSWCG------------MINPQPLGEMLLPFMDR  232 (312)
Q Consensus       195 ~~P~i~IIdprTGe~v~~~~G------------~~~~~~fl~~L~~fl~~  232 (312)
                      .||++.|+++..+.....+.|            .++.+++...+...+.+
T Consensus       104 ~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link  153 (470)
T 3qcp_A          104 FVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNK  153 (470)
T ss_dssp             SSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHH
T ss_pred             ccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhh
Confidence            999999998643333323333            35667777776666644

>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3

Probab=97.57  E-value=0.00011  Score=52.82  Aligned_cols=45  Identities=18%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             CCchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            3 SESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         3 ~~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      -+|..+.++|..|... ||-+.+-+..+|+.++||++.|+..|.+.
T Consensus         2 ~ls~~q~~mv~~~s~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l   46 (59)
T 1oai_A            2 TLSPEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHL   46 (59)
T ss_dssp             CCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3577899999999999 99999999999999999999999999874

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.54  E-value=0.00046  Score=60.08  Aligned_cols=92  Identities=11%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             HHHhhhcCCCccc-cccccHHHHHHHHHHcCCeEEEEeec-------CCCcccchhhcccCCCHHHHHHhh-----ccEE
Q 021440          107 DILASLYRPPFHV-MFNGSFEKAKDAALAQDKWLLVNLQS-------TKEFSSLMLNRDTWGNEAVSQIIS-----VNFI  173 (312)
Q Consensus       107 ~~La~lfrPP~~l-~~~gsf~~A~~~Ak~~~KwLLVniq~-------~~~f~c~~lnRDvw~~~~V~~~i~-----~nFI  173 (312)
                      +.|..+-.+...| +-..+|++.+.  ...+.++||.+..       .||.+|++|.-.+   +.|.+-..     .+.+
T Consensus         9 ~~l~~l~~~~~vi~lt~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~---e~lA~~~~~~~~~~~v~   83 (178)
T 3ga4_A            9 DDILQLKDDTGVITVTADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFEKTY---HAVADVIRSQAPQSLNL   83 (178)
T ss_dssp             HHHHTTCCTTSEEECCTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHH---HHHHHHHHHHCTTCCEE
T ss_pred             HHHHHhhccCCCEECCHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHH---HHHHHHhhhccCCCCEE
Confidence            4455555544444 34668987543  3457899999999       4999999995332   23333233     5688


Q ss_pred             EEEeccCChhHHHHHHhcCCCCCCeEEEEeCC
Q 021440          174 FWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPI  205 (312)
Q Consensus       174 fwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdpr  205 (312)
                      |..+|+|  ++..+++.|++.++|+|.++-+-
T Consensus        84 f~kvD~d--~~~~la~~~~I~siPtl~~F~~g  113 (178)
T 3ga4_A           84 FFTVDVN--EVPQLVKDLKLQNVPHLVVYPPA  113 (178)
T ss_dssp             EEEEETT--TCHHHHHHTTCCSSCEEEEECCC
T ss_pred             EEEEECc--cCHHHHHHcCCCCCCEEEEEcCC
Confidence            8888776  57889999999999999999873

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=97.52  E-value=0.00011  Score=76.19  Aligned_cols=117  Identities=9%  Similarity=0.044  Sum_probs=82.5

Q ss_pred             HHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHH
Q 021440          108 ILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKV  187 (312)
Q Consensus       108 ~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~  187 (312)
                      .+-.-+.||..+  ..+-+.........+|.+||+++++||.+|+.+...+   +.+.+-.+.++.|..++.+.  ...+
T Consensus       649 ~fi~~~~~~~v~--~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~--~~~~  721 (780)
T 3apo_A          649 SWGLGFLPQASI--DLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQA--YPQT  721 (780)
T ss_dssp             HHHHTTSCCCSE--EECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTT--CHHH
T ss_pred             HHHhhhcccccc--cCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCC--CHHH
Confidence            333444555422  2233333344456789999999999999999987554   44555555678888887654  4568


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEecC----CCChHHHHHHHHHHHhhC
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G----~~~~~~fl~~L~~fl~~~  233 (312)
                      +..|++..+|+++|+.  .|+.+..+.|    ..+.+++.+.|.+.+.+.
T Consensus       722 ~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~  769 (780)
T 3apo_A          722 CQKAGIKAYPSVKLYQ--YERAKKSIWEEQINSRDAKTIAALIYGKLETL  769 (780)
T ss_dssp             HHHTTCCSSSEEEEEE--EETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred             HHhcCCCcCCEEEEEc--CCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence            8999999999999993  4776655555    578999999998887654

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.50  E-value=0.00014  Score=47.48  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=34.4

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF   46 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff   46 (312)
                      +.++.|.+++++  |-+.+.|++.|..++||++.|++.+|
T Consensus         3 ~~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            3 GLNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             CHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             hHHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            456799999999  89999999999999999999998764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.50  E-value=0.00047  Score=61.92  Aligned_cols=87  Identities=6%  Similarity=-0.009  Sum_probs=65.5

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh----ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS----VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~----~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      .++..+|+++++||..|+.+...+   ..+.....    .++.+..++.+.  ...++..|++.++|++.|    .|+.+
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l---~~la~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~V~~vPt~~i----~G~~~  207 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLA---HMFAYEAWKQGNPVILSEAVEAYE--NPDIADKYGVMSVPSIAI----NGYLV  207 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEEETTT--CHHHHHHTTCCSSSEEEE----TTEEE
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHH---HHHHHHcccccCCcEEEEEEECcc--CHHHHHHcCCeeeCeEEE----CCEEE
Confidence            467889999999999999985432   12222221    468888876654  446788999999999988    47754


Q ss_pred             EEecCCCChHHHHHHHHHHHhh
Q 021440          211 CSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       211 ~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                        +.|..+.++|++.|.+.+..
T Consensus       208 --~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          208 --FVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             --EESCCCHHHHHHHHHHHHTT
T ss_pred             --EeCCCCHHHHHHHHHHHhhc
Confidence              88999999999999888765

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=96.64  E-value=1.5e-05  Score=63.94  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             HcCC-eEEEEeecCCCcccchhhcccCCCHHHHHHh---hccEEEEEeccCChh-----------------------HHH
Q 021440          134 AQDK-WLLVNLQSTKEFSSLMLNRDTWGNEAVSQII---SVNFIFWQEYDDTSE-----------------------GWK  186 (312)
Q Consensus       134 ~~~K-wLLVniq~~~~f~c~~lnRDvw~~~~V~~~i---~~nFIfwq~~~ds~E-----------------------G~~  186 (312)
                      -++| ++||++..+||.+|+.+...+   ..+.+-+   ..++.++.++.+...                       ...
T Consensus        23 ~~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (143)
T 2lus_A           23 LKDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN   99 (143)
Confidence            3567 999999999999999886554   2222223   235666666666432                       236


Q ss_pred             HHHhcCCCCCCeEEEEeCCCCeeEEE
Q 021440          187 VCSFYNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       187 ~~~~Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      ++..|++..+|++.|||+ .|+.+..
T Consensus       100 ~~~~~~v~~~P~~~lid~-~G~i~~~  124 (143)
T 2lus_A          100 VTAKYGITGIPALVIVKK-DGTLISM  124 (143)
Confidence            778899999999999997 5887765

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.44  E-value=0.00019  Score=63.35  Aligned_cols=90  Identities=13%  Similarity=0.072  Sum_probs=61.7

Q ss_pred             cCCeEEEEeec-CCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------HHH
Q 021440          135 QDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WKV  187 (312)
Q Consensus       135 ~~KwLLVniq~-~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------~~~  187 (312)
                      .+|++||++.. +||..|...-..+  ++...+|=..++.++.++.|+.+.                          ..+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  145 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAF--SDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEI  145 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHH
Confidence            68999999995 9999999865332  111222323468888888887532                          135


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCCCC----hHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMIN----PQPLGEMLL  227 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~~----~~~fl~~L~  227 (312)
                      +..|.+.      .+|++.|||+ .|+.+..+.|...    .+++++.|.
T Consensus       146 ~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~  194 (222)
T 3ztl_A          146 SKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD  194 (222)
T ss_dssp             HHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            5667776      7899999997 6999988877543    455555554

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.44  E-value=0.00044  Score=56.92  Aligned_cols=79  Identities=13%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             cCCeEEEEeec-CCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-------------------HHHHhcCCC
Q 021440          135 QDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-------------------KVCSFYNMD  194 (312)
Q Consensus       135 ~~KwLLVniq~-~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-------------------~~~~~Y~~~  194 (312)
                      .+||++|++.. +||..|...-..+  .+...+|-..++.++.++.|+++..                   .++..|.+.
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  111 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDF--NALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVI  111 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHH--HHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence            57899999997 9999998764332  1222333344677888877765432                   344556554


Q ss_pred             C------------CCeEEEEeCCCCeeEEEecCC
Q 021440          195 S------------IPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       195 ~------------~P~i~IIdprTGe~v~~~~G~  216 (312)
                      .            .|++.|||+ .|+.+..|.|.
T Consensus       112 ~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~  144 (163)
T 3gkn_A          112 KEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKV  144 (163)
T ss_dssp             EEEEETTEEEEEECCEEEEECT-TSCEEEEECSC
T ss_pred             cccccccccccCcceEEEEECC-CCeEEEEEcCC
Confidence            3            899999997 69998888654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.42  E-value=0.00058  Score=56.54  Aligned_cols=89  Identities=10%  Similarity=0.022  Sum_probs=64.1

Q ss_pred             cCCeEEEEeecCC-CcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh---------------------HHHHHHh
Q 021440          135 QDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE---------------------GWKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq~~~-~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E---------------------G~~~~~~  190 (312)
                      .+||++|++..+| |..|...-.      .+.++.+  .++.++.++.|+++                     ...+...
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~------~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  116 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTR------RFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA  116 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHH------HHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH
T ss_pred             CCCeEEEEEecCCCCCchHHHHH------HHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH
Confidence            5799999999998 999987643      3333332  56777777776532                     2356677


Q ss_pred             cCCCC------CCeEEEEeCCCCeeEEEecCC-----CChHHHHHHHHHHH
Q 021440          191 YNMDS------IPAVLVIDPITGQKICSWCGM-----INPQPLGEMLLPFM  230 (312)
Q Consensus       191 Y~~~~------~P~i~IIdprTGe~v~~~~G~-----~~~~~fl~~L~~fl  230 (312)
                      |.+..      +|++.|||+ .|+.+..+.|.     .+.+++++.|.+.+
T Consensus       117 ~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          117 FGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             hCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            77754      499999997 69998888653     24588888888765

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=97.42  E-value=0.0012  Score=58.51  Aligned_cols=35  Identities=11%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          197 PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       197 P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      |+..|||+ .|+.+.+|.|.++++++.+.|.+.|.+
T Consensus       178 pttfLID~-~G~vv~~~~g~~~~~~l~~~I~~ll~~  212 (215)
T 2i3y_A          178 FEKFLVGP-DGIPVMRWSHRATVSSVKTDILAYLKQ  212 (215)
T ss_dssp             TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHGGG
T ss_pred             ceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            67899996 699999999988999888888887754

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.36  E-value=0.00022  Score=56.86  Aligned_cols=42  Identities=19%  Similarity=0.344  Sum_probs=39.1

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      +.++.|...+++ ||.+++.|+..|..|||||+.||...|+..
T Consensus        38 d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~   79 (104)
T 1wj7_A           38 DFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN   79 (104)
T ss_dssp             HHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             cHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            457899999999 999999999999999999999999999865

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.30  E-value=0.00058  Score=57.58  Aligned_cols=74  Identities=12%  Similarity=0.007  Sum_probs=54.5

Q ss_pred             cCCeEEEEeecCC-CcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhH--------------------HHHHHhcC
Q 021440          135 QDKWLLVNLQSTK-EFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEG--------------------WKVCSFYN  192 (312)
Q Consensus       135 ~~KwLLVniq~~~-~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG--------------------~~~~~~Y~  192 (312)
                      .+||+||++..+| |..|...-      +.+.++.+ .++.|+.++.|+++.                    ..+++.|.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  116 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYG  116 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTT
T ss_pred             CCCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhC
Confidence            4799999999988 99998764      34444443 567777777775532                    34667777


Q ss_pred             CCCC---------CeEEEEeCCCCeeEEEecC
Q 021440          193 MDSI---------PAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       193 ~~~~---------P~i~IIdprTGe~v~~~~G  215 (312)
                      +...         |++.|||+ .|+.+..+.|
T Consensus       117 v~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g  147 (175)
T 1xvq_A          117 VTIADGPMAGLLARAIVVIGA-DGNVAYTELV  147 (175)
T ss_dssp             CBBCSSTTTTSBCSEEEEECT-TSBEEEEEEC
T ss_pred             CcccccccCCcccceEEEECC-CCeEEEEEEC
Confidence            7555         99999997 6999988864

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.28  E-value=0.00062  Score=62.04  Aligned_cols=93  Identities=10%  Similarity=0.013  Sum_probs=66.9

Q ss_pred             cCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------------HHHHH
Q 021440          135 QDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------------GWKVC  188 (312)
Q Consensus       135 ~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------------G~~~~  188 (312)
                      .+||+ |+++..+||+.|...-..+  +....+|-+.++.++.++.|+.+                         ...++
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l--~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia  109 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  109 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHH--HHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHH
Confidence            67985 5678899999998764332  12233444557889999888754                         23467


Q ss_pred             HhcCCC-------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHH
Q 021440          189 SFYNMD-------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFM  230 (312)
Q Consensus       189 ~~Y~~~-------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl  230 (312)
                      ..|.+.       .+|.+.|||| .|..+..+.|..    +.++++..|..+.
T Consensus       110 ~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          110 RRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCCcccceEEEECC-CCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            788875       8999999998 598887776643    6788888887765

>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A

Probab=97.27  E-value=0.00027  Score=50.52  Aligned_cols=44  Identities=9%  Similarity=0.033  Sum_probs=41.3

Q ss_pred             CchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            4 ESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         4 ~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      ++..+.++|.+|+.. ||-+.+-+..+|+.++||++.|+..|-+.
T Consensus         2 l~~~q~~mv~~~s~~-T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~   45 (57)
T 2jp7_A            2 LNPVQLELLNKLHLE-TKLNAEYTFMLAEQSNWNYEVAIKGFQSS   45 (57)
T ss_dssp             CCHHHHHHHHHHHHH-HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            466789999999999 99999999999999999999999999885

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.26  E-value=0.0012  Score=55.59  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=64.4

Q ss_pred             HcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-HH------------------HHhcCC
Q 021440          134 AQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-KV------------------CSFYNM  193 (312)
Q Consensus       134 ~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-~~------------------~~~Y~~  193 (312)
                      .++||++|+++ .+||..|..--..+-  +...+|-+.++.++.++.|+++.. ++                  ++.|.+
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~--~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv  108 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFR--DKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNV  108 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESC--CCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhh--hhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence            46899999988 899999976443332  223345556778888887776533 33                  344443


Q ss_pred             ----------CCCCeEEEEeCCCCeeEEEecC-----CCChHHHHHHHHHHHhh
Q 021440          194 ----------DSIPAVLVIDPITGQKICSWCG-----MINPQPLGEMLLPFMDR  232 (312)
Q Consensus       194 ----------~~~P~i~IIdprTGe~v~~~~G-----~~~~~~fl~~L~~fl~~  232 (312)
                                ..+|++.|||+ .|...+.|.+     ..+.+++++.|.+...+
T Consensus       109 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  161 (164)
T 4gqc_A          109 YHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAGE  161 (164)
T ss_dssp             EEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             cccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence                      13578899997 6988877643     24678898888876543

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.24  E-value=0.0014  Score=59.78  Aligned_cols=97  Identities=14%  Similarity=0.152  Sum_probs=70.9

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEee--cCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCC---hhHHHHHHhcC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQ--STKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDT---SEGWKVCSFYN  192 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq--~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds---~EG~~~~~~Y~  192 (312)
                      -..+|++++    ..++.+||+|+  .+||.    |. -+|  +.+.+-+.   .+++|..+|++.   .+...++..|+
T Consensus        22 t~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l~-P~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~   90 (248)
T 2c0g_A           22 DELSFEKTV----ERFPYSVVKFDIASPYGE----KH-EAF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   90 (248)
T ss_dssp             CTTTHHHHH----TTSSEEEEEEEESSCCSH----HH-HHH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             CHHHHHHHH----hcCCCEEEEEECCCCCCc----cH-HHH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence            456788754    56789999999  99997    32 122  23333332   369999999876   34678999999


Q ss_pred             CC--CCCeEEEEeCCCCe--eEEEe--cCCCChHHHHHHHHHHHh
Q 021440          193 MD--SIPAVLVIDPITGQ--KICSW--CGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       193 ~~--~~P~i~IIdprTGe--~v~~~--~G~~~~~~fl~~L~~fl~  231 (312)
                      +.  .||+|.++-   |+  ....+  .|..+.+.+.+.|.+.+.
T Consensus        91 V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           91 VDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             CCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            99  999999995   66  25567  898898887777776654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=97.24  E-value=0.001  Score=60.26  Aligned_cols=96  Identities=14%  Similarity=0.203  Sum_probs=68.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeec--CCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCC---hhHHHHHHhcCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQS--TKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDT---SEGWKVCSFYNM  193 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~--~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds---~EG~~~~~~Y~~  193 (312)
                      -..+|++.+    ..++.+||+|+.  +||.    |. .+|  +.+.+-+.  .+++|..+|++.   .+...++..|++
T Consensus        11 t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A           11 DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             CTTHHHHHG----GGCSEEEEEECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CHHHHHHHH----cCCCCEEEEEeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            345677755    467899999999  9997    32 122  23333343  369999999764   456789999999


Q ss_pred             C--CCCeEEEEeCCCCe--eEEEecCCCChHHHHHHHHHH
Q 021440          194 D--SIPAVLVIDPITGQ--KICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       194 ~--~~P~i~IIdprTGe--~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      .  .||+|.++-.  |+  .+..+.|..+.+.|++.|.+.
T Consensus        80 ~~~~~PTl~~f~~--G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           80 DKESYPVFYLFRD--GDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             CGGGCSEEEEEET--TCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEeC--CCcCcceeecCCCCHHHHHHHHHHh
Confidence            9  9999999963  66  356788988887766655544

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=97.16  E-value=0.0034  Score=55.12  Aligned_cols=35  Identities=20%  Similarity=0.382  Sum_probs=29.6

Q ss_pred             CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          197 PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       197 P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      |+..|||+ .|+.+.+|.|.++++++...|...|.+
T Consensus       160 ~ttflID~-~G~i~~~~~g~~~~~~l~~~I~~ll~~  194 (207)
T 2r37_A          160 FEKFLVGP-DGIPIMRWHHRTTVSNVKMDILSYMRR  194 (207)
T ss_dssp             TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence            67899996 699999999988999888888887754

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.16  E-value=0.0022  Score=55.82  Aligned_cols=91  Identities=9%  Similarity=0.048  Sum_probs=62.0

Q ss_pred             HcCCeEEEEee-----cCCCcccchhhcccCCCHHH-HHHh-hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCC
Q 021440          134 AQDKWLLVNLQ-----STKEFSSLMLNRDTWGNEAV-SQII-SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT  206 (312)
Q Consensus       134 ~~~KwLLVniq-----~~~~f~c~~lnRDvw~~~~V-~~~i-~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprT  206 (312)
                      +..+.++|.+.     .+||..|+.|-..+   ..+ .++. ..++.|..++.+  +...++..|++..||++.++.  .
T Consensus        18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Ptl~~~~--~   90 (229)
T 2ywm_A           18 EFKEPVSIKLFSQAIGCESCQTAEELLKET---VEVIGEAVGQDKIKLDIYSPF--THKEETEKYGVDRVPTIVIEG--D   90 (229)
T ss_dssp             HCCSCEEEEEECCCTTCGGGGHHHHHHHHH---HHHHHHHHCTTTEEEEEECTT--TCHHHHHHTTCCBSSEEEEES--S
T ss_pred             hccCCeEEEEEccCCCCcccHHHHHHHHHH---HHHHhccCCCCceEEEEecCc--ccHHHHHHcCCCcCcEEEEEC--C
Confidence            44455555555     45566666664332   122 2222 467888887655  467899999999999999996  3


Q ss_pred             CeeEEEecCCCChHHHHHHHHHHHh
Q 021440          207 GQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       207 Ge~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      |.....+.|..+.+++...+...+.
T Consensus        91 ~~~~~~~~G~~~~~~l~~~~~~~~~  115 (229)
T 2ywm_A           91 KDYGIRYIGLPAGLEFTTLINGIFH  115 (229)
T ss_dssp             SCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred             CcccceecCCccHHHHHHHHHHHHh
Confidence            6666778898888888777777665

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=97.15  E-value=0.0007  Score=52.68  Aligned_cols=76  Identities=9%  Similarity=0.077  Sum_probs=50.2

Q ss_pred             HHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh---HHHHHHhcCCCCCCeEEEEeC
Q 021440          128 AKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE---GWKVCSFYNMDSIPAVLVIDP  204 (312)
Q Consensus       128 A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E---G~~~~~~Y~~~~~P~i~IIdp  204 (312)
                      .+....+ ++.|+| +..+||.+|+.+.+       +.+-+...|.+..++.+...   ...++..|++..+|++ +++ 
T Consensus        12 ~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~~-   80 (116)
T 2e7p_A           12 KAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FIG-   80 (116)
T ss_dssp             HHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EET-
T ss_pred             HHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EEC-
Confidence            3333443 456666 89999999998854       22333456777777655431   2458889999999999 554 


Q ss_pred             CCCeeEEEecCC
Q 021440          205 ITGQKICSWCGM  216 (312)
Q Consensus       205 rTGe~v~~~~G~  216 (312)
                        |+.+..+.|.
T Consensus        81 --g~~v~~~~~~   90 (116)
T 2e7p_A           81 --GKQIGGCDTV   90 (116)
T ss_dssp             --TEEEECHHHH
T ss_pred             --CEEECChHHH
Confidence              7777655543

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.12  E-value=0.0026  Score=59.41  Aligned_cols=113  Identities=11%  Similarity=0.104  Sum_probs=79.7

Q ss_pred             cCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcC
Q 021440          113 YRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYN  192 (312)
Q Consensus       113 frPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~  192 (312)
                      -.|....+-..++....   ....+.++|++.++||.+|+.+...+   ..+.+-++..+.|..++.+..+..++++.|+
T Consensus       115 ~~p~v~~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~~---~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fg  188 (361)
T 3uem_A          115 QLPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSNF---KTAAESFKGKILFIFIDSDHTDNQRILEFFG  188 (361)
T ss_dssp             SSCSEEECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHHH---HHHHGGGTTTCEEEEECTTSGGGHHHHHHTT
T ss_pred             CCCcceecCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHHH---HHHHHHccCceEEEEecCChHHHHHHHHHcC
Confidence            34555555566666443   23456778899999999999885322   2333344556888888888777889999999


Q ss_pred             CCC--CCeEEEEeCCCCeeEEEec---CCCChHHHHHHHHHHHhhC
Q 021440          193 MDS--IPAVLVIDPITGQKICSWC---GMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       193 ~~~--~P~i~IIdprTGe~v~~~~---G~~~~~~fl~~L~~fl~~~  233 (312)
                      +..  +|+++|++.  |..+..+.   |..+++.+.+-+..+++..
T Consensus       189 i~~~~~P~~~~~~~--~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~  232 (361)
T 3uem_A          189 LKKEECPAVRLITL--EEEMTKYKPESEELTAERITEFCHRFLEGK  232 (361)
T ss_dssp             CCTTTCSEEEEEEC--C--CCEECCSSCCCCHHHHHHHHHHHHTTC
T ss_pred             CCccCCccEEEEEc--CCcccccCCCccccCHHHHHHHHHHHhcCC
Confidence            977  999999996  23333343   6789999888888888643

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.09  E-value=0.002  Score=53.57  Aligned_cols=90  Identities=14%  Similarity=0.118  Sum_probs=54.3

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-HHH------------------HhcCCC
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-KVC------------------SFYNMD  194 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-~~~------------------~~Y~~~  194 (312)
                      ++|+++|++. .+||..|..--..+  .....++-..++.++.++.|+++.. +++                  +.|.+.
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l--~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~  106 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTF--RDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVA  106 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CC--SCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred             CCCeEEEEecCCCCCCccccchhhc--ccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCc
Confidence            5799999998 89999997654433  2233445556788888888876543 344                  344431


Q ss_pred             -----------CCCeEEEEeCCCCeeEEEecCC-----CChHHHHHHHH
Q 021440          195 -----------SIPAVLVIDPITGQKICSWCGM-----INPQPLGEMLL  227 (312)
Q Consensus       195 -----------~~P~i~IIdprTGe~v~~~~G~-----~~~~~fl~~L~  227 (312)
                                 ..|++.|||+ .|...+.|.|.     .+.+++++.|+
T Consensus       107 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~  154 (157)
T 4g2e_A          107 WEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVVK  154 (157)
T ss_dssp             EECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred             cccccCCCcceeeeeEEEECC-CCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence                       2467788997 58877776442     34566655554

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.06  E-value=0.0025  Score=56.47  Aligned_cols=93  Identities=13%  Similarity=0.074  Sum_probs=61.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||+||++. .+||..|..--..+  ++...+|-..++.++.++.|+.+..                          .+
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  132 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEF--NKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDI  132 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHH
Confidence            5799999999 99999998653322  1111222234566666666664322                          23


Q ss_pred             HHhcCC-----CCCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHHH
Q 021440          188 CSFYNM-----DSIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPFM  230 (312)
Q Consensus       188 ~~~Y~~-----~~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~fl  230 (312)
                      +..|.+     ..+|++.|||+ .|+.+..+.|.    .+++++++.|....
T Consensus       133 ~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          133 SKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            344555     25799999997 69988887663    35778888777765

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=97.00  E-value=0.0029  Score=53.56  Aligned_cols=92  Identities=14%  Similarity=0.235  Sum_probs=59.0

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-HH------------------HHhcCCC
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-KV------------------CSFYNMD  194 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-~~------------------~~~Y~~~  194 (312)
                      .+||++|++. ..||..|..--..+  .....+|-..++.++.+..|+++.. ++                  +..|.+.
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l--~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~  127 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEF--NLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVI  127 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHH--HHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence            5789999998 88999997654332  1222333345688888888875432 23                  3444441


Q ss_pred             ------------CCCeEEEEeCCCCeeEEEecCCC---ChHHHHHHHHHH
Q 021440          195 ------------SIPAVLVIDPITGQKICSWCGMI---NPQPLGEMLLPF  229 (312)
Q Consensus       195 ------------~~P~i~IIdprTGe~v~~~~G~~---~~~~fl~~L~~f  229 (312)
                                  ..|++.|||+ .|+.+..|.|..   ..+++++.|...
T Consensus       128 ~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          128 KEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             EEECCC--CEEEECCEEEEECT-TSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                        2588999997 699988886642   345566666554

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.00  E-value=0.0033  Score=51.64  Aligned_cols=93  Identities=5%  Similarity=0.063  Sum_probs=58.6

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------HHHHHHhcCCC
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------GWKVCSFYNMD  194 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------G~~~~~~Y~~~  194 (312)
                      ++||++|++. .+||..|...-..+  ++...+|-..+ .++.++.|+++                   ...++..|.+.
T Consensus        34 k~~~vvl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  110 (159)
T 2a4v_A           34 NNRVVVFFVYPRASTPGSTRQASGF--RDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAK  110 (159)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHH--HHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCB
T ss_pred             CCCeEEEEEcCCCCCCCHHHHHHHH--HHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence            3569999986 88999997543221  11112222233 44455555433                   22456677777


Q ss_pred             CCC------eEEEEeCCCCeeEEEecCCCC---hHHHHHHHHHHHhh
Q 021440          195 SIP------AVLVIDPITGQKICSWCGMIN---PQPLGEMLLPFMDR  232 (312)
Q Consensus       195 ~~P------~i~IIdprTGe~v~~~~G~~~---~~~fl~~L~~fl~~  232 (312)
                      ..|      +..|| + .|+.+..+.|...   .+.+++.|.+.++.
T Consensus       111 ~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~  155 (159)
T 2a4v_A          111 KTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK  155 (159)
T ss_dssp             SSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHHH
Confidence            777      77778 6 6999988888643   46778888877765

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=96.99  E-value=0.0034  Score=52.65  Aligned_cols=100  Identities=12%  Similarity=0.048  Sum_probs=61.4

Q ss_pred             cCCeEEEEeecCCCc-ccchhhcccC------------------------CCHHHHHHhhcc---EEEEEec--cCChhH
Q 021440          135 QDKWLLVNLQSTKEF-SSLMLNRDTW------------------------GNEAVSQIISVN---FIFWQEY--DDTSEG  184 (312)
Q Consensus       135 ~~KwLLVniq~~~~f-~c~~lnRDvw------------------------~~~~V~~~i~~n---FIfwq~~--~ds~EG  184 (312)
                      .+||+||++..+||. .|...-..+=                        +-+.+++|++++   |.-|.+-  .+..+.
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            489999999999996 5865322210                        002233333321   2222211  112234


Q ss_pred             HHHHHhcCC---------CCCCeEEEEeCCCCeeEEEecCC-CChHHHHHHHHHHHhhCCC
Q 021440          185 WKVCSFYNM---------DSIPAVLVIDPITGQKICSWCGM-INPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       185 ~~~~~~Y~~---------~~~P~i~IIdprTGe~v~~~~G~-~~~~~fl~~L~~fl~~~~~  235 (312)
                      .++++.|.+         ...|++.|||| .|+.+..|.|. .++++++..|.+.+.....
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~~  166 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEGHH  166 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCSCT
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhccccc
Confidence            456666543         34588999998 69998888886 6899999988887765443

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=96.99  E-value=0.002  Score=56.38  Aligned_cols=93  Identities=12%  Similarity=0.071  Sum_probs=60.5

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||+||++. .+||..|..--..+  ++...+|-..++.++.++.|+++..                          .+
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  124 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAF--GDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI  124 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHH
Confidence            5799999999 99999998543221  0111222234677777777665421                          23


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFM  230 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl  230 (312)
                      +..|.+.      ..|++.|||+ .|+.+..+.|..    +.+++++.|....
T Consensus       125 ~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          125 SKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            3444442      4899999997 699888876643    5678888777765

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=96.97  E-value=0.0059  Score=51.45  Aligned_cols=95  Identities=9%  Similarity=0.080  Sum_probs=57.9

Q ss_pred             HHHcCCeEEEEeecCCCc-ccchhhcccCCCHHHHHHhh---ccEEEEEecc----CChhHH-HHHHhcC----------
Q 021440          132 ALAQDKWLLVNLQSTKEF-SSLMLNRDTWGNEAVSQIIS---VNFIFWQEYD----DTSEGW-KVCSFYN----------  192 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f-~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~----ds~EG~-~~~~~Y~----------  192 (312)
                      +.=++||+|||+..+||. .|......+   ..+.+.++   .++.++.+++    |+++.. +|+..|.          
T Consensus        28 ~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l---~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~lt  104 (170)
T 4hde_A           28 KDLKGKVWVADFMFTNCQTVCPPMTANM---AKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLT  104 (170)
T ss_dssp             HHHTTSCEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEB
T ss_pred             HHhCCCEEEEEEECCCCCCcccHHHHHH---HHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecC
Confidence            334689999999999996 686543332   23334332   2344444443    344322 2333222          


Q ss_pred             ----------------C----------CCCCeEEEEeCCCCeeEEEecCC--CChHHHHHHHHHHH
Q 021440          193 ----------------M----------DSIPAVLVIDPITGQKICSWCGM--INPQPLGEMLLPFM  230 (312)
Q Consensus       193 ----------------~----------~~~P~i~IIdprTGe~v~~~~G~--~~~~~fl~~L~~fl  230 (312)
                                      .          ..-|++.|||| .|+.+..|.|.  .+.+++++.|+..+
T Consensus       105 g~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          105 GYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             CSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence                            1          12378899997 69998889885  35688888887755

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=96.97  E-value=0.0045  Score=51.55  Aligned_cols=87  Identities=13%  Similarity=-0.025  Sum_probs=52.2

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh---------------------HHHHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE---------------------GWKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E---------------------G~~~~~~  190 (312)
                      .+||++|++. ..||..|...-.      .+.++.+  .++.++.++.|+++                     ...+ +.
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~------~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~  118 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETK------KFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EK  118 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHH------HHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GG
T ss_pred             CCCeEEEEEECCCCCCchHHHHH------HHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HH
Confidence            4689999998 789999975421      1222211  23333333333322                     1223 45


Q ss_pred             cCCC---------CCCeEEEEeCCCCeeEEEecC-----CCChHHHHHHHHHH
Q 021440          191 YNMD---------SIPAVLVIDPITGQKICSWCG-----MINPQPLGEMLLPF  229 (312)
Q Consensus       191 Y~~~---------~~P~i~IIdprTGe~v~~~~G-----~~~~~~fl~~L~~f  229 (312)
                      |.+.         ..|++.|||+ .|+.+..+.|     ..+++++++.|++.
T Consensus       119 ~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          119 YGVLIGEGALKGILARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             GTCBBCSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             hCCEecccccCCceeeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence            5542         2599999997 5888888754     24678888877653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.93  E-value=0.0012  Score=51.19  Aligned_cols=81  Identities=15%  Similarity=0.017  Sum_probs=55.0

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecC
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G  215 (312)
                      .+..+|.+..+||..|+.+.+-+ .      -+..++-|..++++.++...++..|. ...|+| +++   |+.+ .+ |
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L-~------~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l-~~~---g~~~-~~-~   80 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVL-Q------PYKDRFILQEVDITLPENSTWYERYK-FDIPVF-HLN---GQFL-MM-H   80 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHT-S------TTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEE-EES---SSEE-EE-S
T ss_pred             CCCEEEEEeCCCCcchHHHHHHH-H------HhhhCCeEEEEECCCcchHHHHHHHC-CCCCEE-EEC---CEEE-Ee-c
Confidence            45668888999999999985432 1      11234667778888666788999999 999976 444   6654 33 3


Q ss_pred             CCChHHHHHHHHHHH
Q 021440          216 MINPQPLGEMLLPFM  230 (312)
Q Consensus       216 ~~~~~~fl~~L~~fl  230 (312)
                      ..+++.+.+.|..++
T Consensus        81 g~~~~~l~~~l~~~~   95 (100)
T 1wjk_A           81 RVNTSKLEKQLRKLS   95 (100)
T ss_dssp             SCCHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHH
Confidence            467776655555433

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=96.93  E-value=0.0049  Score=52.55  Aligned_cols=93  Identities=14%  Similarity=0.058  Sum_probs=61.2

Q ss_pred             cCCeEEEEeec-CCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-HHHHHhc---------------------
Q 021440          135 QDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-WKVCSFY---------------------  191 (312)
Q Consensus       135 ~~KwLLVniq~-~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-~~~~~~Y---------------------  191 (312)
                      .+||+||++.. +||..|..--..+  +....+|-..++.++.++.|+++. .+|+..+                     
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~  106 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN  106 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHH
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHH
Confidence            57999999984 8999998643222  112222333467777777776543 2344433                     


Q ss_pred             -CCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHHH
Q 021440          192 -NMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPFM  230 (312)
Q Consensus       192 -~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~fl  230 (312)
                       .+.      ..|++.|||+ .|+.+..+.|..    +.+++++.|....
T Consensus       107 ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          107 FDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence             332      2599999997 699888887653    5778887777665

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=96.90  E-value=0.014  Score=51.36  Aligned_cols=108  Identities=9%  Similarity=0.051  Sum_probs=73.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCC--CCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMD--SIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~--~~P~  198 (312)
                      -.-+.+.+...-....+++++.+.+.+|..|..+-. .|  ..|.+-.+.++.|.-++.+..+..++++.|.+.  .+|.
T Consensus       116 ~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~-~~--~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~  192 (227)
T 4f9z_D          116 TEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMH-RY--QKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPA  192 (227)
T ss_dssp             EECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHH-HH--HHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSE
T ss_pred             eecCcccHHHHhccCCceEEEEEEcCCcchHHHHHH-HH--HHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCE
Confidence            344555555555555677777777878878876542 22  335555566788887888766666788999997  8999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      |+|++...+.+...-.|.++++.+.+-|..|++
T Consensus       193 ~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          193 LAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             EEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            999997544332222366888887777777765

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.82  E-value=0.0039  Score=45.23  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |-+.+.|++-|.+++||++.|++..|++..
T Consensus         9 ~~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~~   49 (63)
T 1wji_A            9 DEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNK   49 (63)
T ss_dssp             CHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            57889999999  899999999999999999999999998764

>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A

Probab=96.80  E-value=0.0006  Score=64.90  Aligned_cols=41  Identities=24%  Similarity=0.473  Sum_probs=37.9

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      .+++..+|.+| |++|+..|..||+.++||||.|++.||+..
T Consensus        45 ~~~~~~~f~~~-~~~~~~~~~~~l~~~~w~~~~~~~~~~~~~   85 (362)
T 4gew_A           45 DEQKLHEFAII-TATDEAFAQSILQDVDWDLKKALDVFYGSE   85 (362)
T ss_dssp             HHHHHHHHHHH-HTCCHHHHHHHTTSSSSCHHHHHHHHHHCG
T ss_pred             hHHHHHHHHHH-hCCcHHHHHHHHhhcCchHHHHHHHHcCCc
Confidence            45689999999 999999999999999999999999999653

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=96.78  E-value=0.00081  Score=46.06  Aligned_cols=42  Identities=14%  Similarity=0.138  Sum_probs=38.2

Q ss_pred             hhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            6 IDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         6 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      .+..+.|.+.+++  |-+...|++-|.+|+||++.|++..|++.
T Consensus         2 ~~e~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~   43 (47)
T 1dv0_A            2 SQEKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQN   43 (47)
T ss_dssp             -CCHHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred             cchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence            4577899999999  99999999999999999999999999864

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=96.75  E-value=0.0029  Score=48.31  Aligned_cols=75  Identities=13%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCCh
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINP  219 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~  219 (312)
                      +|.+..+||.+|+++.+       +.+-+...+ |..+|++.  ...++..|.+. .|+|.+   ..|+.+.   |..++
T Consensus         3 vv~f~a~~C~~C~~~~~-------~L~~~~~~~-~~~vdid~--~~~l~~~~g~~-vPtl~~---~~G~~v~---g~~~~   65 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVE-------ALAQARAGA-FFSVFIDD--DAALESAYGLR-VPVLRD---PMGRELD---WPFDA   65 (87)
T ss_dssp             EEEEECSSCHHHHHHHH-------HHHHTTCCC-EEEEECTT--CHHHHHHHTTT-CSEEEC---TTCCEEE---SCCCH
T ss_pred             EEEEECCCCchHHHHHH-------HHHHHHHhh-eEEEECCC--CHHHHHHhCCC-cCeEEE---ECCEEEe---CCCCH
Confidence            67788999999999843       222233332 34566654  34578889987 999987   3487763   77888


Q ss_pred             HHHHHHHHHHHh
Q 021440          220 QPLGEMLLPFMD  231 (312)
Q Consensus       220 ~~fl~~L~~fl~  231 (312)
                      +.+.+.|...++
T Consensus        66 ~~L~~~l~~~~~   77 (87)
T 1ttz_A           66 PRLRAWLDAAPH   77 (87)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHH
Confidence            876666655443

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.72  E-value=0.0024  Score=47.81  Aligned_cols=42  Identities=17%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ..++.|.+.+++  |-+.+.|++-|.+++||++.|++..|++.+
T Consensus        28 ~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~   69 (73)
T 1vg5_A           28 ASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSG   69 (73)
T ss_dssp             CCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred             ccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            457899999999  799999999999999999999999998643

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.71  E-value=0.0028  Score=44.65  Aligned_cols=42  Identities=12%  Similarity=0.057  Sum_probs=37.1

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      -++.|.+.+++ +=.+...+++.|.+++||++.||...|...+
T Consensus         9 ~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~   50 (54)
T 2dah_A            9 FQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG   50 (54)
T ss_dssp             SHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            36789999999 6667788899999999999999999998765

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.70  E-value=0.0029  Score=42.10  Aligned_cols=39  Identities=18%  Similarity=0.352  Sum_probs=35.5

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      ..+.|.+.+++  |-+.+.|++-|..++||++.|++..|++
T Consensus         4 ~e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~   42 (43)
T 2g3q_A            4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence            45789999999  8999999999999999999999988864

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=96.69  E-value=0.0032  Score=44.07  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=36.6

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      -+++|.+.+++ +-.+.+.|++.|.+++||++.||+..|++.
T Consensus        11 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A           11 FQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            46789999999 555999999999999999999999999864

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.69  E-value=0.0022  Score=44.21  Aligned_cols=41  Identities=12%  Similarity=0.210  Sum_probs=37.2

Q ss_pred             hhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            6 IDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         6 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      ...++.|.+.+++  |-+.+.|+.-|.+++||++.|++..|++
T Consensus         6 ~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~g   46 (49)
T 1ify_A            6 SEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            3467899999999  7899999999999999999999998874

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=96.67  E-value=0.003  Score=56.66  Aligned_cols=92  Identities=12%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             cCCeEEEEeec-CCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQS-TKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq~-~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||+||++.. .||+.|..--..+  .....+|-..++.++.++.|+.+..                          .+
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l--~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v  153 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAF--SDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQI  153 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHH--HHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHH
Confidence            57999999998 9999998643221  1112223334677888877765432                          23


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPF  229 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~f  229 (312)
                      +..|.+.      .+|.+.|||+ .|+.+..+.|..    ..+++++.|...
T Consensus       154 ~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          154 SKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            4445553      5799999997 699887766532    456666666543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=96.61  E-value=0.0059  Score=53.52  Aligned_cols=86  Identities=14%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEecc--------------------------------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYD--------------------------------  179 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~--------------------------------  179 (312)
                      ...|..+|.+.++||..|+.+...      +.++.+.  .+++..+..                                
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~  157 (216)
T 1eej_A           84 PQEKHVITVFTDITCGYCHKLHEQ------MADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS  157 (216)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTT------HHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHH------HHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCC
Confidence            457999999999999999999765      4555543  344433321                                


Q ss_pred             --------CChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          180 --------DTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       180 --------ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                              .-.+..++++.|.+..+|+++|.|   |.   .+.|+.++++|.+.|...+.
T Consensus       158 ~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~~  211 (216)
T 1eej_A          158 VAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQK  211 (216)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhhh
Confidence                    112345677899999999996545   54   35799999988888877654

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=96.60  E-value=0.0031  Score=57.29  Aligned_cols=91  Identities=11%  Similarity=0.032  Sum_probs=58.3

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||+||++. ..||+.|..--..+  .....+|-..++.++.++.|+.+..                          .+
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l--~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~v  167 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAF--GDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI  167 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHH
Confidence            5799999999 88999998643221  1122333335677777777765431                          33


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP  228 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~  228 (312)
                      +..|.+.      .+|.+.|||+ .|..+..+.+.    ...+++++.|..
T Consensus       168 a~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          168 SKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            4445542      4799999997 69888776653    245666666544

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=96.55  E-value=0.0038  Score=42.50  Aligned_cols=39  Identities=8%  Similarity=0.020  Sum_probs=34.9

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      -++.|.+.+++ +-.+.+.+++.|.+++||++.||...|+
T Consensus         7 ~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            7 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            46789999999 6678899999999999999999998885

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.52  E-value=0.0035  Score=48.07  Aligned_cols=41  Identities=15%  Similarity=0.112  Sum_probs=38.1

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      .+++|.+.+++  |-+.+.|++.|.+++||++.|++..|.+.+
T Consensus        29 ~ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~~   69 (83)
T 1veg_A           29 SQESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHGG   69 (83)
T ss_dssp             CHHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            46899999999  899999999999999999999999999765

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=96.42  E-value=0.0066  Score=50.33  Aligned_cols=86  Identities=13%  Similarity=-0.052  Sum_probs=50.9

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhH---------------------HHHHHhc
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEG---------------------WKVCSFY  191 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG---------------------~~~~~~Y  191 (312)
                      .+||++|++. +.||..|..--      +.+.++.+ .++.++.++.|+++.                     ..++..|
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~------~~l~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~  118 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQT------RKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENY  118 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHH------HHHHHHSCTTTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHH
T ss_pred             CCCcEEEEEECCCCCCccHHHH------HHHHHHhhcCCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHh
Confidence            4688888888 67888886431      22222222 234444444443321                     2455556


Q ss_pred             CCCC------CCeEEEEeCCCCeeEEEecCC-----CChHHHHHHHH
Q 021440          192 NMDS------IPAVLVIDPITGQKICSWCGM-----INPQPLGEMLL  227 (312)
Q Consensus       192 ~~~~------~P~i~IIdprTGe~v~~~~G~-----~~~~~fl~~L~  227 (312)
                      .+..      .|++.|||+ .|+.+..+.+.     .+.+++++.|+
T Consensus       119 gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~  164 (166)
T 3p7x_A          119 GVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYK  164 (166)
T ss_dssp             TCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             CCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHh
Confidence            6532      799999997 69888775432     34577776665

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=96.32  E-value=0.028  Score=46.73  Aligned_cols=85  Identities=7%  Similarity=0.049  Sum_probs=62.5

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc----cEEEEEeccCC----------------------------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYDDT----------------------------  181 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~----nFIfwq~~~ds----------------------------  181 (312)
                      ...|..+|.+.+.+|..|..+..      .+.+++++    .|++..+....                            
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~------~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~   93 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMA------EVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMG   93 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH------HHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCCccHHHHHH------HHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence            46799999999999999999974      45666653    46666554321                            


Q ss_pred             -------------------------------------hhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHH
Q 021440          182 -------------------------------------SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGE  224 (312)
Q Consensus       182 -------------------------------------~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~  224 (312)
                                                           ....+++..|.+...|+++|    .|+   .+.|..+.+.|.+
T Consensus        94 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~  166 (175)
T 3gyk_A           94 MSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQD  166 (175)
T ss_dssp             CSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHH
Confidence                                                 12234667888999999986    354   4579999999998


Q ss_pred             HHHHHHh
Q 021440          225 MLLPFMD  231 (312)
Q Consensus       225 ~L~~fl~  231 (312)
                      .|.+.++
T Consensus       167 ~i~~~l~  173 (175)
T 3gyk_A          167 AVDRARK  173 (175)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8888775

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.26  E-value=0.0092  Score=53.35  Aligned_cols=94  Identities=6%  Similarity=-0.034  Sum_probs=62.2

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccC-----------------------------
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDD-----------------------------  180 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~d-----------------------------  180 (312)
                      ....|..++.+.+.+|..|+.|...      +.+++++   .|++..+..-                             
T Consensus        94 ~~~ak~~v~~F~D~~Cp~C~~~~~~------l~~~~~~g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~  167 (241)
T 1v58_A           94 KKDAPVIVYVFADPFCPYCKQFWQQ------ARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGG  167 (241)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHHH------HHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTT
T ss_pred             CCCCCeEEEEEECCCChhHHHHHHH------HHHHHhCCcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhc
Confidence            3456888999999999999999754      4566654   2333333210                             


Q ss_pred             ----------C-------hhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          181 ----------T-------SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       181 ----------s-------~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                                +       .+..++++.|.+...|+++|.+. +|+. .++.|+.++++|.+.|.+.+.++-
T Consensus       168 ~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~-~G~~-~~~~G~~~~~~L~~~l~~~~~~~~  236 (241)
T 1v58_A          168 KLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENTL-QQAVGLPDQKTLNIIMGNKLQHHH  236 (241)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTEE-EEEESSCCHHHHHHHTTC------
T ss_pred             cCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCCE-EEecCCCCHHHHHHHHHHHHHhhc
Confidence                      0       12235667889999999999885 5753 567899999988887777665543

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=96.26  E-value=0.036  Score=51.99  Aligned_cols=123  Identities=15%  Similarity=0.098  Sum_probs=75.4

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHH-------------------HHHHhc
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGW-------------------KVCSFY  191 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~-------------------~~~~~Y  191 (312)
                      .+||+++|++ ..+++.|..         ++.+|-+   +++.++.++.|+.+..                   ++++.|
T Consensus        23 ~Gk~vvl~F~p~~~tp~C~~---------e~~~~~~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~y   93 (322)
T 4eo3_A           23 YGKYTILFFFPKAGTSGSTR---------EAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFF   93 (322)
T ss_dssp             TTSEEEEEECSSTTSHHHHH---------HHHHHHHSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCeEEEEEECCCCCCCCHH---------HHHHHHHHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhc
Confidence            5799999998 345666642         2233322   3567777877765433                   355666


Q ss_pred             CC----CCCCeEEEEeCCCCeeEEEecCCC---ChHHHHHHHHHHHh-hCCCCcCCccccc-c-CCCCCCCCChHHHHHH
Q 021440          192 NM----DSIPAVLVIDPITGQKICSWCGMI---NPQPLGEMLLPFMD-RSPRKCATIIIER-Q-RASSTTPQRNIKDCCS  261 (312)
Q Consensus       192 ~~----~~~P~i~IIdprTGe~v~~~~G~~---~~~~fl~~L~~fl~-~~~~~~~~~~~k~-~-~~~~~~~~~~~eql~~  261 (312)
                      .+    ..+|+..|||+ .|...++|.+..   .++++++.|+.+.+ +.++..  ...+| . |.-+.. .-..|+|+.
T Consensus        94 gv~~~~~~~r~tfiId~-~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~--~I~~RRSiR~F~~~-~V~~e~l~~  169 (322)
T 4eo3_A           94 NVLENGKTVRSTFLIDR-WGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNK--HIEWRRARRALKKD-RVPREELEL  169 (322)
T ss_dssp             TCEETTEECCEEEEECT-TSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCH--HHHHCCCCCCBCCC-CCCHHHHHH
T ss_pred             CCCCCCcCccEEEEECC-CCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHH--HHHhhhccCCcCcc-ccCHHHHHH
Confidence            66    35789999997 699988898742   36888888888874 344431  12222 1 222111 123477777


Q ss_pred             HHHHhhHhh
Q 021440          262 ALAASMETI  270 (312)
Q Consensus       262 Ai~~Sl~~~  270 (312)
                      .|++...+-
T Consensus       170 ileaA~~AP  178 (322)
T 4eo3_A          170 LIKAAHLAP  178 (322)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHhCc
Confidence            777776543

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.23  E-value=0.007  Score=43.24  Aligned_cols=39  Identities=8%  Similarity=0.010  Sum_probs=35.4

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      +++|.+.+++ +-.+.+.+++.|.+++||++.||...|.+
T Consensus        18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~   56 (58)
T 1wr1_B           18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG   56 (58)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            5689999999 65789999999999999999999999875

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=96.21  E-value=0.0074  Score=42.02  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=35.4

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      -.++|.+.+++ +=.+.+.|++.|.+++||++.||+..|.+
T Consensus        12 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~   51 (52)
T 2jy5_A           12 FQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS   51 (52)
T ss_dssp             THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            46799999999 54499999999999999999999988864

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=96.18  E-value=0.0032  Score=58.76  Aligned_cols=89  Identities=11%  Similarity=0.066  Sum_probs=58.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC-C-hhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD-T-SEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d-s-~EG~~~~~~Y~~~~~P~i  199 (312)
                      .+....++.+..++.+  +|.+..+||.+|+++..- |.     ++- +.+-+..++.+ . .+..++++.|++..+|++
T Consensus       185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~p~-le-----~lA-~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~  255 (291)
T 3kp9_A          185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQKEL-FG-----AAF-DQVPYVECSPNGPGTPQAQECTEAGITSYPTW  255 (291)
T ss_dssp             CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHHHH-HG-----GGG-GGSCEEESCSSCSSSCCCHHHHTTTCCSTTEE
T ss_pred             CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHHHH-HH-----HHH-HHcCEEEEeecCchhhHHHHHHHcCCcccCeE
Confidence            4445555555555554  689999999999999542 22     211 23334555532 2 336789999999999996


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEML  226 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L  226 (312)
                      .+    .|+.   +.|..+.+++.+.+
T Consensus       256 ~i----~G~~---~~G~~~~~~L~~~l  275 (291)
T 3kp9_A          256 II----NGRT---YTGVRSLEALAVAS  275 (291)
T ss_dssp             EE----TTEE---EESCCCHHHHHHHT
T ss_pred             EE----CCEE---ecCCCCHHHHHHHH
Confidence            55    4764   78988877655443

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.16  E-value=0.0086  Score=43.21  Aligned_cols=45  Identities=11%  Similarity=0.199  Sum_probs=41.4

Q ss_pred             CchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            4 ESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         4 ~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +|..+.+.|.+.+++  |=+.+.|++-|+++++|+|.|++=-|.+.+
T Consensus        15 ls~se~e~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFSH~D   59 (63)
T 1wgn_A           15 LSPSERQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSG   59 (63)
T ss_dssp             CCHHHHHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred             hCcchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            466788899999999  899999999999999999999999999875

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.09  E-value=0.011  Score=44.22  Aligned_cols=42  Identities=14%  Similarity=0.169  Sum_probs=37.3

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      -+++|.+.+++ +-.+.+.+++.|.+++||++.||...|.+.+
T Consensus        29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~   70 (74)
T 1vej_A           29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG   70 (74)
T ss_dssp             SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            46789999999 6578999999999999999999999998643

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=96.07  E-value=0.0092  Score=47.89  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ++.|.+..++ +-.+.+.+++.|.+++||++.||+..|+.+.
T Consensus        67 ~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~  107 (108)
T 2cwb_A           67 QPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA  107 (108)
T ss_dssp             HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence            6799999999 7789999999999999999999999998653

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=96.01  E-value=0.036  Score=47.90  Aligned_cols=85  Identities=18%  Similarity=0.036  Sum_probs=55.4

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHH---------------------HHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGW---------------------KVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~---------------------~~~~~  190 (312)
                      .+|+++|++. +.||..|..--      +.+.++.+  .++.++.++.|+++..                     .++..
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~  150 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQA  150 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHH
T ss_pred             CCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHH
Confidence            5799999998 67999997643      33344433  4677777777765432                     33444


Q ss_pred             cCCC---------CCCeEEEEeCCCCeeEEEecCC-----CChHHHHHHH
Q 021440          191 YNMD---------SIPAVLVIDPITGQKICSWCGM-----INPQPLGEML  226 (312)
Q Consensus       191 Y~~~---------~~P~i~IIdprTGe~v~~~~G~-----~~~~~fl~~L  226 (312)
                      |.+.         ..|++.|||+ .|+.+..+.|.     .+.+++++.|
T Consensus       151 ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L  199 (200)
T 3zrd_A          151 YGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL  199 (200)
T ss_dssp             TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             hCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence            5442         2599999997 69888776432     3455665554

>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}

Probab=95.98  E-value=0.011  Score=42.95  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=38.8

Q ss_pred             CchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            4 ESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         4 ~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      +.-+.+..|..|+-- ||+++..||.+|+--||||..|++.|=.
T Consensus        13 mt~dmdavls~fvrs-tgaepgLaRDlleGKnWDl~AAL~D~eq   55 (73)
T 2l2d_A           13 MTLDMDAVLSDFVRS-TGAEPGLARDLLEGKNWDLTAALSDYEQ   55 (73)
T ss_dssp             SSCCHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHh-cCCCcchhHHhhccCCccHhHHhhhHHH
Confidence            455688899999999 8999999999999999999999999844

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.94  E-value=0.012  Score=43.85  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=37.6

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ..++|.+.+++  |-+.+.|++-|.+++||++.|++-.|++.+
T Consensus        29 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~~   69 (73)
T 1wiv_A           29 DQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSG   69 (73)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            56789999999  899999999999999999999999998654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=95.93  E-value=0.01  Score=49.02  Aligned_cols=87  Identities=13%  Similarity=-0.050  Sum_probs=51.8

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh---------------------HHHHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE---------------------GWKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E---------------------G~~~~~~  190 (312)
                      ++||++|++. +.||..|..--.      .+.++.+  .++.++.++.|+++                     ...++..
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~------~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  114 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTR------RFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRD  114 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHH------HHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHH
T ss_pred             CCCEEEEEEECCCCCCccHHHHH------HHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHH
Confidence            5789999998 589999975321      1222211  23333333333322                     2245555


Q ss_pred             cCCC----C--CCeEEEEeCCCCeeEEEecCC-----CChHHHHHHHHH
Q 021440          191 YNMD----S--IPAVLVIDPITGQKICSWCGM-----INPQPLGEMLLP  228 (312)
Q Consensus       191 Y~~~----~--~P~i~IIdprTGe~v~~~~G~-----~~~~~fl~~L~~  228 (312)
                      |.+.    .  .|++.|||+ .|+.+..+.|.     .+.+++++.|++
T Consensus       115 ~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          115 YALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             HTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             hCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence            6553    2  399999997 69988888663     234777777653

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.87  E-value=0.013  Score=44.96  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=37.2

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      .++|.+++++  |-+.+.|++.|..++||+|.|++-.|++..
T Consensus        22 ~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~   61 (85)
T 2dkl_A           22 SRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKV   61 (85)
T ss_dssp             HHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence            6789999999  899999999999999999999999998753

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=95.75  E-value=0.045  Score=48.81  Aligned_cols=86  Identities=12%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             HHcCCeEEEEeecCC--CcccchhhcccCCCHHHHHHhhc--c------EEEEEeccCChhHHHHHHhcCCCCCCeEEEE
Q 021440          133 LAQDKWLLVNLQSTK--EFSSLMLNRDTWGNEAVSQIISV--N------FIFWQEYDDTSEGWKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       133 k~~~KwLLVniq~~~--~f~c~~lnRDvw~~~~V~~~i~~--n------FIfwq~~~ds~EG~~~~~~Y~~~~~P~i~II  202 (312)
                      ++-.+.|+|.+..+|  |..|+.|.      +.+.++-+.  .      ..|..++.+  +...++..|++..+|+++|+
T Consensus        22 ~~~~~pv~v~~~~~~~~c~~c~~~~------~~l~ela~~~~~~~~~~~v~~~~vd~d--~~~~~~~~~gv~~~Pt~~i~   93 (243)
T 2hls_A           22 AEMVNPVEVHVFLSKSGCETCEDTL------RLMKLFEEESPTRNGGKLLKLNVYYRE--SDSDKFSEFKVERVPTVAFL   93 (243)
T ss_dssp             TTCCSCEEEEEEECSSSCTTHHHHH------HHHHHHHHHSCEETTEESEEEEEEETT--TTHHHHHHTTCCSSSEEEET
T ss_pred             HhCCCCEEEEEEeCCCCCCchHHHH------HHHHHHHHhccCCCCCceeEEEEecCC--cCHHHHHhcCCCcCCEEEEE
Confidence            345689999999999  99999883      333443332  1      556666554  45678999999999999998


Q ss_pred             eCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          203 DPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       203 dprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +   |  ...+.|.....++...+..+++
T Consensus        94 ~---g--~~~~~G~~~~~~l~~fv~~~l~  117 (243)
T 2hls_A           94 G---G--EVRWTGIPAGEEIRALVEVIMR  117 (243)
T ss_dssp             T---T--TEEEESCCCTTHHHHHHHHHHH
T ss_pred             C---C--ceeEcCCCcHHHHHHHHHHHHh
Confidence            3   5  5557787666677666666664

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=95.73  E-value=0.012  Score=48.81  Aligned_cols=74  Identities=19%  Similarity=0.057  Sum_probs=47.3

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhH---------------------HHHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEG---------------------WKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG---------------------~~~~~~  190 (312)
                      .+||++|++. ..||..|..--      +.+.++.+  .++.++.++.|+++.                     ..++..
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  115 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSV------RKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQ  115 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHH------HHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHH
T ss_pred             CCCeEEEEEECCCCCCccHHHH------HHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHH
Confidence            5789999998 78999997542      22333322  456666666655432                     234445


Q ss_pred             cCCCC---------CCeEEEEeCCCCeeEEEecC
Q 021440          191 YNMDS---------IPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       191 Y~~~~---------~P~i~IIdprTGe~v~~~~G  215 (312)
                      |.+..         .|++.|||+ .|+.+..+.|
T Consensus       116 ~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~  148 (165)
T 1q98_A          116 LGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV  148 (165)
T ss_dssp             TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred             hCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence            55421         489999996 5888888764

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.68  E-value=0.011  Score=42.55  Aligned_cols=42  Identities=24%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      -..+.|.+.+++  |-+.+.|++-|.+++||+|.|++-.|++.+
T Consensus         8 ~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~~   49 (63)
T 2dak_A            8 PPEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHID   49 (63)
T ss_dssp             CCHHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            357899999999  889999999999999999999999998654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=95.58  E-value=0.024  Score=49.56  Aligned_cols=83  Identities=10%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccC-------------------------------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDD-------------------------------  180 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~d-------------------------------  180 (312)
                      ...|..+|.+.++||..|+.|...      +.++.+.  .+++..+...                               
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~  157 (211)
T 1t3b_A           84 KNEKHVVTVFMDITCHYCHLLHQQ------LKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL  157 (211)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTT------HHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHH------HHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence            357899999999999999999764      4555442  3444333221                               


Q ss_pred             ---------ChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          181 ---------TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       181 ---------s~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                               -.+..++++.|.+...|+++|.|   |+   .+.|+.++++|.+.|.+
T Consensus       158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~n---G~---~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVTST---GE---LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CSSCCCSSHHHHHHHHHHHHTCCSSCEEECTT---SC---CCCSCCCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCCcCCEEEEeC---CE---EecCCCCHHHHHHHHHh
Confidence                     01334567889999999999843   65   36898898887766643

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=95.50  E-value=0.037  Score=45.75  Aligned_cols=78  Identities=8%  Similarity=-0.117  Sum_probs=44.7

Q ss_pred             HcCCeEEEEee-cCCCcccc--hhhcccCCCHHHHHHhhccEE-EEEeccCChhH---------------------HHHH
Q 021440          134 AQDKWLLVNLQ-STKEFSSL--MLNRDTWGNEAVSQIISVNFI-FWQEYDDTSEG---------------------WKVC  188 (312)
Q Consensus       134 ~~~KwLLVniq-~~~~f~c~--~lnRDvw~~~~V~~~i~~nFI-fwq~~~ds~EG---------------------~~~~  188 (312)
                      -++||++|++. ++||..|.  .+. .+  ++...+|-..++. ++.++.|+++.                     ..++
T Consensus        33 ~~gk~vvl~f~~~~~c~~C~~~e~~-~l--~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  109 (162)
T 1tp9_A           33 VAGKKVILFGVPGAFTPTCSLKHVP-GF--IEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYT  109 (162)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHH-HH--HHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHH
T ss_pred             hCCCcEEEEEeCCCCCCCCCHHHHH-HH--HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHH
Confidence            36899999999 89999998  221 11  0111122223444 55555554332                     2344


Q ss_pred             HhcCCC-----------CCCeEEEEeCCCCeeEEEecCC
Q 021440          189 SFYNMD-----------SIPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       189 ~~Y~~~-----------~~P~i~IIdprTGe~v~~~~G~  216 (312)
                      +.|.+.           ..|++.|||  .|+....+.|.
T Consensus       110 ~~~gv~~~~~~~g~~~~~~p~~~vid--~G~i~~~~~~~  146 (162)
T 1tp9_A          110 HALGLELDLQEKGLGTRSRRFALLVD--DLKVKAANIEG  146 (162)
T ss_dssp             HHTTCEEEETTTTSEEEECCEEEEEE--TTEEEEEEECS
T ss_pred             HHcCcccccccCCCCccceeEEEEEE--CCEEEEEEeeC
Confidence            555543           268888888  58877776553

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=95.49  E-value=0.046  Score=49.00  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=58.5

Q ss_pred             cCCeEEEEeecCC-Ccccc---------hhhcccCCCHHHHHHhhccEEEEEeccCChh---------------------
Q 021440          135 QDKWLLVNLQSTK-EFSSL---------MLNRDTWGNEAVSQIISVNFIFWQEYDDTSE---------------------  183 (312)
Q Consensus       135 ~~KwLLVniq~~~-~f~c~---------~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E---------------------  183 (312)
                      .+||++|+++..| |+.|.         .|++. |          .++.++.++.|+++                     
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~-~----------~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~  115 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS-W----------PHLKLIVITVDSPSSLARARHEHGLPNIALLSTLR  115 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT-C----------TTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTT
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH-c----------CCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCC
Confidence            4789999999877 89998         23222 1          34455555555432                     


Q ss_pred             HHHHHHhcCCCC---------CCeEEEEeCCCCeeEEEec-----CCCChHHHHHHHHHHHhhCC
Q 021440          184 GWKVCSFYNMDS---------IPAVLVIDPITGQKICSWC-----GMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       184 G~~~~~~Y~~~~---------~P~i~IIdprTGe~v~~~~-----G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ...++..|.+..         .|++.|||+ .|...+.|.     +..+.+++++.|........
T Consensus       116 ~~~vak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~~  179 (224)
T 3keb_A          116 GRDFHKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQQAM  179 (224)
T ss_dssp             CTTHHHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC-
T ss_pred             chHHHHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhhccc
Confidence            234666676632         699999997 698887753     23578999999988766543

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=95.41  E-value=0.052  Score=47.76  Aligned_cols=89  Identities=9%  Similarity=-0.101  Sum_probs=53.7

Q ss_pred             cCCeEEEEee-cCCCcccc-hhhcccCCCHHHHHHhhccE-EEEEeccCChhH--------------------HHHHHhc
Q 021440          135 QDKWLLVNLQ-STKEFSSL-MLNRDTWGNEAVSQIISVNF-IFWQEYDDTSEG--------------------WKVCSFY  191 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~-~lnRDvw~~~~V~~~i~~nF-Ifwq~~~ds~EG--------------------~~~~~~Y  191 (312)
                      .+||++|++. .+||+.|. .--..+  ++...+|-..++ .++.++.|+++.                    ..++..|
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l--~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  109 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRY--NELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGM  109 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHH--HHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHh
Confidence            5799999998 99999998 221111  111222223456 666666665432                    1244455


Q ss_pred             CCC-----------CCCeEEEEeCCCCeeEEEecCC---------CChHHHHHHHH
Q 021440          192 NMD-----------SIPAVLVIDPITGQKICSWCGM---------INPQPLGEMLL  227 (312)
Q Consensus       192 ~~~-----------~~P~i~IIdprTGe~v~~~~G~---------~~~~~fl~~L~  227 (312)
                      .+.           ..|+..|| + .|.....+.|.         .+++++++.|.
T Consensus       110 gv~~~~~~~g~~~~~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~  163 (241)
T 1nm3_A          110 GMLVGKEDLGFGKRSWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLA  163 (241)
T ss_dssp             TCEEECTTTTCCEEECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred             CceeecccccCcccceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhh
Confidence            542           34888888 5 79988887764         24566655554

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=95.40  E-value=0.041  Score=49.22  Aligned_cols=91  Identities=11%  Similarity=-0.035  Sum_probs=57.2

Q ss_pred             CeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH---------------------------HHHH
Q 021440          137 KWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG---------------------------WKVC  188 (312)
Q Consensus       137 KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG---------------------------~~~~  188 (312)
                      ||++|+++ .+||+.|..--..+  .....+|-+.++-++.++.|+.+.                           .+++
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l--~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va  107 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRV--IQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELA  107 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHH
Confidence            49999998 78999997643221  111222334566677776666432                           1234


Q ss_pred             HhcCCC------------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHHH
Q 021440          189 SFYNMD------------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPFM  230 (312)
Q Consensus       189 ~~Y~~~------------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~fl  230 (312)
                      ..|.+.            ..|.+.|||| .|+....+.|.    .+.++++..|....
T Consensus       108 ~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          108 VKLGMVDPDERTSTGMPLTCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HHTTCEEEEEECTTCCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHhCCcCcccccCCCcccccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            445442            4799999997 58887776543    25778877777654

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.36  E-value=0.043  Score=40.30  Aligned_cols=42  Identities=12%  Similarity=0.031  Sum_probs=37.7

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEA   51 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~~   51 (312)
                      .+.|.+.+++ +-.+.+.+++.|.++++|++.||...|.+.+.
T Consensus        20 ~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~~~~   61 (67)
T 2dna_A           20 SKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQGF   61 (67)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            5689999999 66888888999999999999999999998654

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=95.17  E-value=0.039  Score=38.42  Aligned_cols=37  Identities=11%  Similarity=0.139  Sum_probs=34.4

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      .+.|.+.|++  |-|.+.|++-|..++||+|.|.+.-.+
T Consensus        12 ~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLle   48 (52)
T 2ooa_A           12 DAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILRE   48 (52)
T ss_dssp             HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            4899999999  999999999999999999999988765

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.16  E-value=0.13  Score=50.93  Aligned_cols=82  Identities=10%  Similarity=0.000  Sum_probs=60.0

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh--hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i--~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      ..++..++.+..+||.+|+++..-      +.++.  +.+..|..++.+  +...++..|++.+.|++.|    .|+.+.
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~------l~~~a~~~~~v~~~~vd~~--~~~~~~~~~~i~svPt~~i----~g~~~~  182 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQA------LNLMAVLNPRIKHTAIDGG--TFQNEITERNVMGVPAVFV----NGKEFG  182 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHH------HHHHHHHCTTEEEEEEETT--TCHHHHHHTTCCSSSEEEE----TTEEEE
T ss_pred             cCCCcceEEEECCCCcCcHHHHHH------HHHHHhHcCceEEEEEech--hhHHHHHHhCCCccCEEEE----CCEEEe
Confidence            346677888889999999998643      22222  336777777655  5667899999999999976    487764


Q ss_pred             EecCCCChHHHHHHHHHH
Q 021440          212 SWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       212 ~~~G~~~~~~fl~~L~~f  229 (312)
                        .|..+.+++++.|...
T Consensus       183 --~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          183 --QGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             --ESCCCHHHHHHHHCCS
T ss_pred             --cCCCCHHHHHHHHhhc
Confidence              4888888887776443

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=95.10  E-value=0.039  Score=43.81  Aligned_cols=76  Identities=12%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             eEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440          138 WLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       138 wLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~  216 (312)
                      ..+|.+..+||..|+.+.+      -+.++..+ .+-|..+|++..  ..++..|.+. .|+|+++.  .|+.+  ..|.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~------~L~~l~~e~~i~~~~vDId~d--~~l~~~ygv~-VP~l~~~~--dG~~v--~~g~   96 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIA------SLRVLQKKSWFELEVINIDGN--EHLTRLYNDR-VPVLFAVN--EDKEL--CHYF   96 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHH------HHHHHHHHSCCCCEEEETTTC--HHHHHHSTTS-CSEEEETT--TTEEE--ECSS
T ss_pred             cEEEEEeCCCChhHHHHHH------HHHHHHHhcCCeEEEEECCCC--HHHHHHhCCC-CceEEEEE--CCEEE--EecC
Confidence            3478888999999999843      23333333 366677777642  3467788886 99997664  47766  3577


Q ss_pred             CChHHHHHHH
Q 021440          217 INPQPLGEML  226 (312)
Q Consensus       217 ~~~~~fl~~L  226 (312)
                      .+++++.+.|
T Consensus        97 ~~~~~L~~~L  106 (107)
T 2fgx_A           97 LDSDVIGAYL  106 (107)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCHHHHHHHh
Confidence            8888765544

>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A

Probab=95.03  E-value=0.004  Score=56.79  Aligned_cols=46  Identities=17%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             CchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            4 ESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         4 ~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ++..++++|.+|+.. ||-+.+-|.++|+.++||++.|+..|.+.-.
T Consensus       194 ~~~~q~~~v~~~~~~-T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~  239 (250)
T 1jkg_B          194 LSPEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHLKA  239 (250)
T ss_dssp             -----------------------------------------------
T ss_pred             CCHHHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            345677899999999 9999999999999999999999999977543

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.94  E-value=0.036  Score=42.30  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=37.9

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |-+.+.|++-|.+++||+|.|++-.|++.+
T Consensus        29 ~e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~~~   69 (83)
T 2dai_A           29 DEAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEHAE   69 (83)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            56789999999  999999999999999999999999999754

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.90  E-value=0.043  Score=38.61  Aligned_cols=46  Identities=7%  Similarity=0.151  Sum_probs=39.7

Q ss_pred             chhhHH-HHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 021440            5 SIDKES-RISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNEA   51 (312)
Q Consensus         5 s~~~~~-~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~~   51 (312)
                      +.++.. ++.++.++ +=.|.+.-++.|..+||||+.||...+..+.+
T Consensus         5 ~ee~~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~   51 (54)
T 2cp8_A            5 SSGQTAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP   51 (54)
T ss_dssp             SCTTHHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred             HHHhhHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence            334444 89999999 88899999999999999999999999987654

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.79  E-value=0.046  Score=39.53  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHc-CCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQAT-SWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~-~wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+++++  |-+.+.|++-|.++ +||+|.|++-.|++.+
T Consensus         9 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~   50 (64)
T 1whc_A            9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHED   50 (64)
T ss_dssp             CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence            45689999999  89999999999999 7999999999999764

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.69  E-value=0.037  Score=40.10  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=36.2

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSW-KLDEAILLFFAVNE   50 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~w-dLe~Av~lff~~~~   50 (312)
                      .+.|.+.+++  |-+.+.|++-|.+++| |+|.|++-.|++.+
T Consensus        20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~   60 (64)
T 2cpw_A           20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFSHSG   60 (64)
T ss_dssp             CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence            3579999999  8999999999999999 99999999998654

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=94.66  E-value=0.058  Score=37.18  Aligned_cols=42  Identities=24%  Similarity=0.225  Sum_probs=37.0

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      .++.+...+++=-..+..++++.|+.++||++.||+..++..
T Consensus         4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~   45 (49)
T 1otr_A            4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN   45 (49)
T ss_dssp             HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            456777777877889999999999999999999999998864

>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.56  E-value=0.12  Score=38.53  Aligned_cols=42  Identities=17%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      ++-++.|..+||+..|...=.+-|++.++||..||.+.-+..
T Consensus        24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~   65 (80)
T 1vdl_A           24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN   65 (80)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence            456899999998889999999999999999999999987754

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.56  E-value=0.065  Score=37.44  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=36.0

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      -.+.|.+.|++  |-|.+.|++-|..++||+|.|.+...+..
T Consensus         9 ~e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef~   48 (53)
T 2d9s_A            9 LSSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREFS   48 (53)
T ss_dssp             SHHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            34679999999  99999999999999999999999987754

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=94.52  E-value=0.18  Score=44.42  Aligned_cols=91  Identities=11%  Similarity=0.042  Sum_probs=55.6

Q ss_pred             CeEEE-EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-----------------------------HH
Q 021440          137 KWLLV-NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-----------------------------WK  186 (312)
Q Consensus       137 KwLLV-niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-----------------------------~~  186 (312)
                      +|++| ++-.+||+.|..--..+  +....+|-+.++-++.++.|+.+.                             .+
T Consensus        32 ~~vvL~~~~a~~cp~C~~el~~l--~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~  109 (224)
T 1prx_A           32 SWGILFSHPRDFTPVCTTELGRA--AKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  109 (224)
T ss_dssp             SEEEEEEESCSSCHHHHHHHHHH--HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchH
Confidence            47555 45678999997543221  111223334567777777666432                             13


Q ss_pred             HHHhcCCC------------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHHH
Q 021440          187 VCSFYNMD------------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPFM  230 (312)
Q Consensus       187 ~~~~Y~~~------------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~fl  230 (312)
                      ++..|.+.            ..|++.|||| .|+....+.|.    .+.++++..|....
T Consensus       110 va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          110 LAILLGMLDPAEKDEKGMPVTARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             HHHHTTSSCSCTTCSSSCCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcccccCCCccccceEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            44556552            3799999998 58888777553    25788887777665

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.32  E-value=0.061  Score=36.29  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      ..+.|.+.+++  |-+.+.|++-|.+++ |+|.|++-.|++
T Consensus         9 ~~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~h   46 (47)
T 2ekk_A            9 NQQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLTH   46 (47)
T ss_dssp             CHHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence            57789999999  899999999999997 999999988864

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=94.24  E-value=0.061  Score=39.02  Aligned_cols=60  Identities=13%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      ++.+..+||..|+.+.+      .+.+++++   .|.+..++.+ .+...++..|++.++|+|.|    .|+.+
T Consensus         4 ~~~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~gv~~vPt~~i----~g~~~   66 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQ------AVANAIDPSKYTVEIVHLGTD-KARIAEAEKAGVKSVPALVI----DGAAF   66 (80)
T ss_dssp             EEEEEECSCHHHHHHHH------HHHHHSCTTTEEEEEEETTTC-SSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred             eEEEeCCCCCchHHHHH------HHHHHHHhcCCeEEEEEecCC-hhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence            44567889999999964      34556654   3666655542 13456778899999999876    37754

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=94.23  E-value=0.047  Score=39.75  Aligned_cols=40  Identities=15%  Similarity=0.120  Sum_probs=35.7

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      .++|....+. ||+....|+.-|+.+|||++.||...-..+
T Consensus        10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg   49 (64)
T 2cp9_A           10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHKEA   49 (64)
T ss_dssp             CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            4689999999 999999999999999999999998876543

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.20  E-value=0.067  Score=39.86  Aligned_cols=41  Identities=17%  Similarity=0.130  Sum_probs=37.2

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcC-CCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATS-WKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~-wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |-+.+.|++-|.+++ ||+|.|++-.|++.+
T Consensus         9 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~   50 (74)
T 2dag_A            9 DESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHMD   50 (74)
T ss_dssp             CHHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence            56789999999  899999999999998 589999999999764

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=94.11  E-value=0.13  Score=44.08  Aligned_cols=76  Identities=11%  Similarity=-0.009  Sum_probs=43.8

Q ss_pred             cCCeE-EEEeecCCCcccch--hhcccCCCHHHHHHhhccEE-EEEeccCChhHH---------------------HHHH
Q 021440          135 QDKWL-LVNLQSTKEFSSLM--LNRDTWGNEAVSQIISVNFI-FWQEYDDTSEGW---------------------KVCS  189 (312)
Q Consensus       135 ~~KwL-LVniq~~~~f~c~~--lnRDvw~~~~V~~~i~~nFI-fwq~~~ds~EG~---------------------~~~~  189 (312)
                      ++||+ |+++-..||+.|..  +.. +  ++...+|-..++. ++.++.|+++..                     ++++
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~-l--~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~  131 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPG-Y--LENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTK  131 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHH-H--HHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHH
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHH-H--HHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHH
Confidence            46765 45556999999987  321 1  1112233334566 677776664322                     2444


Q ss_pred             hcCCC-----------CCCeEEEEeCCCCeeEEEecC
Q 021440          190 FYNMD-----------SIPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       190 ~Y~~~-----------~~P~i~IIdprTGe~v~~~~G  215 (312)
                      .|.+.           ..|+..|||  .|.....|.|
T Consensus       132 ~yGv~~~~~~~g~g~~~~r~tfiId--dG~I~~~~~~  166 (184)
T 3uma_A          132 AIGMEIDLSAGTLGIRSKRYSMLVE--DGVVKALNIE  166 (184)
T ss_dssp             HTTCEEEEGGGTCEEEECCEEEEEE--TTEEEEEEEC
T ss_pred             HcCCceeccccCCcccceeEEEEEC--CCEEEEEEEe
Confidence            45542           357788885  6888877754

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=94.10  E-value=0.14  Score=43.16  Aligned_cols=42  Identities=12%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             HHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       187 ~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      .+..+.+...|+++|    .|+.+....|..+.+.|.+.|...+.+
T Consensus       144 ~a~~~gv~gtPt~~v----ng~~~~~~~G~~~~e~l~~~i~~l~~k  185 (192)
T 3h93_A          144 LAMAYQVTGVPTMVV----NGKYRFDIGSAGGPEETLKLADYLIEK  185 (192)
T ss_dssp             HHHHHTCCSSSEEEE----TTTEEEEHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCeEEE----CCEEEecccccCCHHHHHHHHHHHHHH
Confidence            345677899999976    477765555888999999988887754

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.26  Score=43.80  Aligned_cols=96  Identities=15%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||++++++ ..+|+.|..=-..+  ++...+|-+.+..++.++.|+....                          ++
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v  128 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIAF--SEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL  128 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhHH--HHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence            4799999999 78899887644332  3445566677999999999975432                          45


Q ss_pred             HHhcCC------CCCCeEEEEeCCCCeeEEEecC----CCChHHHHHHHHHH--HhhC
Q 021440          188 CSFYNM------DSIPAVLVIDPITGQKICSWCG----MINPQPLGEMLLPF--MDRS  233 (312)
Q Consensus       188 ~~~Y~~------~~~P~i~IIdprTGe~v~~~~G----~~~~~~fl~~L~~f--l~~~  233 (312)
                      +..|.+      -.++.+.|||| .|.....|.-    -.+.+++|..|+.+  .+++
T Consensus       129 ak~YGv~~~~~g~~~R~tFiID~-~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ~~~~~  185 (216)
T 3sbc_A          129 SRDYGVLIEEEGVALRGLFIIDP-KGVIRHITINDLPVGRNVDEALRLVEAFQWTDKN  185 (216)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCeeccCCceeeEEEEECC-CCeEEEEEEcCCCCCCCHHHHHHHHHHhhhHhhc
Confidence            677776      23688999998 5876554321    13778888777654  3444

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=93.74  E-value=0.14  Score=36.49  Aligned_cols=43  Identities=16%  Similarity=0.160  Sum_probs=37.8

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      .++.|.++.++=-..|.++.+..|+++++|+|.||+..++...
T Consensus         9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~   51 (59)
T 1wgl_A            9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE   51 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence            4567777877778889999999999999999999999999764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=93.55  E-value=0.19  Score=36.26  Aligned_cols=74  Identities=9%  Similarity=0.043  Sum_probs=45.3

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChh--HHHHHHhcC--CCCCCeEEEEeCCCCeeEEEe
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSE--GWKVCSFYN--MDSIPAVLVIDPITGQKICSW  213 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~E--G~~~~~~Y~--~~~~P~i~IIdprTGe~v~~~  213 (312)
                      ++.+..+||..|+.+.+-      +.++..  .++-|..++++...  -..+...|.  +.++|+| +++   |+.+   
T Consensus         3 v~~f~~~~C~~C~~~~~~------l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i-~~~---g~~i---   69 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDL------AEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI-FVD---QQHI---   69 (85)
T ss_dssp             EEEECCTTSTHHHHHHHH------HHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE-EET---TEEE---
T ss_pred             EEEEeCCCCCCHHHHHHH------HHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE-EEC---CEEE---
Confidence            566788999999998532      222222  34666666655422  246888888  8999998 444   6654   


Q ss_pred             cCCCChHHHHHHHHHH
Q 021440          214 CGMINPQPLGEMLLPF  229 (312)
Q Consensus       214 ~G~~~~~~fl~~L~~f  229 (312)
                      .|   .+++.+.+.+.
T Consensus        70 ~~---~~~l~~~~~~~   82 (85)
T 1ego_A           70 GG---YTDFAAWVKEN   82 (85)
T ss_dssp             ES---SHHHHHHHHHH
T ss_pred             EC---HHHHHHHHHHh
Confidence            23   24555555443

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=93.39  E-value=0.24  Score=41.89  Aligned_cols=76  Identities=7%  Similarity=-0.208  Sum_probs=42.8

Q ss_pred             cCCeEEEEee-cCCCcccch--hhcccCCCHHHHHHhhccEEEEE-eccCChhHH---------------------HHHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLM--LNRDTWGNEAVSQIISVNFIFWQ-EYDDTSEGW---------------------KVCS  189 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~--lnRDvw~~~~V~~~i~~nFIfwq-~~~ds~EG~---------------------~~~~  189 (312)
                      .+||++|++. ..||+.|..  |..-   .+...+|-..++.++. ++.|+++..                     ++++
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l---~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~  118 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGF---VEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGK  118 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHH---HHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHH
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHH---HHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHH
Confidence            4677766555 899999983  4310   1112223334455554 555554322                     3445


Q ss_pred             hcCCC-------------CCCeEEEEeCCCCeeEEEecC
Q 021440          190 FYNMD-------------SIPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       190 ~Y~~~-------------~~P~i~IIdprTGe~v~~~~G  215 (312)
                      .|.+.             ..|+..|||  .|.....|.+
T Consensus       119 ~yGv~~~~~~~~~~g~~~~~r~tfvID--dG~I~~~~v~  155 (173)
T 3mng_A          119 ETDLLLDDSLVSIFGNRRLKRFSMVVQ--DGIVKALNVE  155 (173)
T ss_dssp             HHTCBCCSTTHHHHSSCCBCCEEEEEE--TTEEEEEEEC
T ss_pred             HhCCCcccccccccCCcceEEEEEEEE--CCEEEEEEEe
Confidence            55542             348888888  5887777654

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.15  E-value=0.19  Score=40.34  Aligned_cols=76  Identities=9%  Similarity=0.097  Sum_probs=47.2

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--hhH-HHHHHhcCCCCCCeE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--SEG-WKVCSFYNMDSIPAV  199 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--~EG-~~~~~~Y~~~~~P~i  199 (312)
                      ....+.+..+.+.++ |+| +..+||..|+.+.+       +.+-++-.|..+.++.+.  ++. ..+...|.+..+|+|
T Consensus        14 ~~~~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l   84 (130)
T 2cq9_A           14 TAPVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI   84 (130)
T ss_dssp             CCHHHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE
T ss_pred             HHHHHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE
Confidence            445555666666665 444 67789999998843       222234467766665442  222 247788999999998


Q ss_pred             EEEeCCCCeeEE
Q 021440          200 LVIDPITGQKIC  211 (312)
Q Consensus       200 ~IIdprTGe~v~  211 (312)
                      . ++   |+.+.
T Consensus        85 ~-i~---G~~ig   92 (130)
T 2cq9_A           85 F-VN---GTFIG   92 (130)
T ss_dssp             E-ET---TEEEE
T ss_pred             E-EC---CEEEc
Confidence            4 44   66543

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=92.83  E-value=0.17  Score=38.63  Aligned_cols=41  Identities=15%  Similarity=0.234  Sum_probs=37.1

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHc-CCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQAT-SWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~-~wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |-+.+.|++.|..+ |||+|.|++-.|++.+
T Consensus        29 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~   70 (84)
T 1vek_A           29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMD   70 (84)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            57899999999  99999999999998 5999999999999754

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=92.72  E-value=0.37  Score=42.93  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=65.0

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||++++++ ..+++-|..=-.++  ++...+|-+.+..++.++.|+....                          .+
T Consensus        55 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v  132 (219)
T 3tue_A           55 KGKWVVLFFYPLDFTFVCPTEVIAF--SDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNI  132 (219)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHH--HTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCEEEEEEecccCCCCCchhHhhH--HHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHH
Confidence            4799999999 67888887654333  3445677778999999999985432                          35


Q ss_pred             HHhcCC------CCCCeEEEEeCCCCeeEEEecC--C--CChHHHHHHHHHH--HhhCC
Q 021440          188 CSFYNM------DSIPAVLVIDPITGQKICSWCG--M--INPQPLGEMLLPF--MDRSP  234 (312)
Q Consensus       188 ~~~Y~~------~~~P~i~IIdprTGe~v~~~~G--~--~~~~~fl~~L~~f--l~~~~  234 (312)
                      ++.|.+      -.+-.+.|||| .|...+.|.-  .  -..+++|..|+..  .+++.
T Consensus       133 a~~yGv~~~~~g~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ~~~~~~  190 (219)
T 3tue_A          133 ARSYGVLEESQGVAYRGLFIIDP-HGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHG  190 (219)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHcCCcccCCCeeEEEEEEECC-CCeEEEEEEecCCCCCCHHHHHHHHHHhhhHHhcC
Confidence            666766      12457889998 5876655521  1  3678888777544  34443

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=92.02  E-value=0.47  Score=39.95  Aligned_cols=22  Identities=5%  Similarity=-0.062  Sum_probs=18.4

Q ss_pred             cCCeEEEEeecCCCcccchhhc
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNR  156 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnR  156 (312)
                      .+|..+|.+.+.||..|..+..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~   45 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEP   45 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHH
T ss_pred             CCCeEEEEEECCCCccHHHhhH
Confidence            4678899999999999998864

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=91.27  E-value=0.27  Score=39.86  Aligned_cols=41  Identities=27%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |-+.+.|++-|.+++||++.|++..|.+.+
T Consensus        78 ~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~  118 (126)
T 2lbc_A           78 PEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFSHPE  118 (126)
T ss_dssp             CHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            56789999999  899999999999999999999999998654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=91.09  E-value=0.61  Score=38.90  Aligned_cols=54  Identities=4%  Similarity=-0.165  Sum_probs=32.2

Q ss_pred             CeEEEEeecCCCcccch--hhcccCCCHHHHHHhhccEE-EEEeccCChh-HHHHHHhcCC
Q 021440          137 KWLLVNLQSTKEFSSLM--LNRDTWGNEAVSQIISVNFI-FWQEYDDTSE-GWKVCSFYNM  193 (312)
Q Consensus       137 KwLLVniq~~~~f~c~~--lnRDvw~~~~V~~~i~~nFI-fwq~~~ds~E-G~~~~~~Y~~  193 (312)
                      +.||+++..+||..|..  |. .+  ++...+|-..++. ++.++.++++ ..++++.+.+
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p-~l--~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~  102 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVP-PY--KHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA  102 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHH-HH--HHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CEEEEEecCCCCCCCCHHHHH-HH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence            46788999999999986  32 11  1122334345677 7777777654 2345554443

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=91.04  E-value=0.49  Score=41.46  Aligned_cols=93  Identities=8%  Similarity=0.052  Sum_probs=55.2

Q ss_pred             cCC-eEEEEe-ecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------HH
Q 021440          135 QDK-WLLVNL-QSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WK  186 (312)
Q Consensus       135 ~~K-wLLVni-q~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------~~  186 (312)
                      .+| |+++.+ -.+||+.|..--..+  .....+|=+.++.++.++.|+.+.                          ..
T Consensus        29 ~Gk~~vvL~f~~a~~cp~C~~el~~l--~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~  106 (220)
T 1xcc_A           29 IENSWAILFSHPNDFTPVCTTELAEL--GKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRE  106 (220)
T ss_dssp             TTTSEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSH
T ss_pred             cCCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhH
Confidence            344 766665 578999997532211  111222333467777777766432                          12


Q ss_pred             HHHhcCCC------------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHHH
Q 021440          187 VCSFYNMD------------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPFM  230 (312)
Q Consensus       187 ~~~~Y~~~------------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~fl  230 (312)
                      ++..|.+.            ..|++.|||| .|.....+.|.    .+.++++..|....
T Consensus       107 va~~ygv~~~~~~~~~g~~~~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          107 LANKLKIMDEQEKDITGLPLTCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             HHHHHTCEEEEEECTTSCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcccccCCCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            44555551            3689999997 58887776442    36778877776654

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.76  E-value=0.36  Score=34.86  Aligned_cols=41  Identities=24%  Similarity=0.286  Sum_probs=36.3

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSW-KLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~w-dLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |=+.+.|++-|..+++ |+|.|++-.|++.+
T Consensus         9 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~   50 (64)
T 2crn_A            9 SPSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHCN   50 (64)
T ss_dssp             SCSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence            44578999998  8999999999999976 99999999999765

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=90.74  E-value=0.35  Score=40.36  Aligned_cols=56  Identities=11%  Similarity=-0.256  Sum_probs=32.1

Q ss_pred             cCCeEEEEee-cCCCcccch-hhcccCCCHHHHHHhhccE-EEEEeccCChhH-HHHHHhcC
Q 021440          135 QDKWLLVNLQ-STKEFSSLM-LNRDTWGNEAVSQIISVNF-IFWQEYDDTSEG-WKVCSFYN  192 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~-lnRDvw~~~~V~~~i~~nF-Ifwq~~~ds~EG-~~~~~~Y~  192 (312)
                      ++||++|++. .+||..|.. --..+  ++...+|-..++ .++.++.|+++. .++++.+.
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l--~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~   89 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGY--VEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHG   89 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHH--HHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcC
Confidence            5789999886 899999987 11111  011223334466 677777666542 23444433

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=90.44  E-value=0.36  Score=39.05  Aligned_cols=39  Identities=23%  Similarity=0.147  Sum_probs=35.3

Q ss_pred             HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440           10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus        10 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +.|.+|+++  |=+.+.|+.-|..+++|++.|+...|...+
T Consensus        78 ~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~~~~  116 (118)
T 4ae4_A           78 QLMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence            569999999  899999999999999999999999987643

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=90.29  E-value=0.051  Score=45.23  Aligned_cols=45  Identities=11%  Similarity=0.181  Sum_probs=34.0

Q ss_pred             HHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          184 GWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       184 G~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      ..++++.|.+...|+++|-   .|+.   +.|+.+++.|.+.|.+.+.++-
T Consensus        98 ~~~la~~~gI~gtPt~vi~---nG~~---i~G~~~~~~l~~~i~~~~~~~~  142 (147)
T 3gv1_A           98 TTSLGEQFGFNGTPTLVFP---NGRT---QSGYSPMPQLEEIIRKNQQEGH  142 (147)
T ss_dssp             HHHHHHHTTCCSSCEEECT---TSCE---EESCCCTTHHHHHHHHTSCC--
T ss_pred             HHHHHHHhCCCccCEEEEE---CCEE---eeCCCCHHHHHHHHHHHHHhcc
Confidence            4466788889999999983   3653   6799999999988888776653

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=90.04  E-value=1.7  Score=35.57  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             hccEEEEEeccCChhHHHHHHhcCCC--CCCeEEEEeC-CCCeeEEEec-CCCChHHHHHHHHHHHhh
Q 021440          169 SVNFIFWQEYDDTSEGWKVCSFYNMD--SIPAVLVIDP-ITGQKICSWC-GMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       169 ~~nFIfwq~~~ds~EG~~~~~~Y~~~--~~P~i~IIdp-rTGe~v~~~~-G~~~~~~fl~~L~~fl~~  232 (312)
                      +..++|.-++.+..+..+.+.++++.  .+|.|+|++. ..|.+- ... |.++++.+.+-+..|++.
T Consensus        62 kgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky-~~~~~~~t~~~i~~Fv~d~l~G  128 (147)
T 3bj5_A           62 KGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKY-KPESEELTAERITEFCHRFLEG  128 (147)
T ss_dssp             TTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEEE-CCSCCCCCHHHHHHHHHHHHTT
T ss_pred             CCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEecccccccC-CCCcccCCHHHHHHHHHHHHcC
Confidence            34577777776546666788899996  4999999995 334432 233 667887766666666654

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=89.35  E-value=1.3  Score=33.92  Aligned_cols=75  Identities=13%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH---HH-HHHhcCCCCCCe
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG---WK-VCSFYNMDSIPA  198 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG---~~-~~~~Y~~~~~P~  198 (312)
                      ..+.+.++...+.++  +|.+..+||..|+.+.+       +.+-++-.|...-++.+.+++   .. +...+...++|.
T Consensus         6 ~~~~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~-------~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~   76 (113)
T 3rhb_A            6 SRMEESIRKTVTENT--VVIYSKTWCSYCTEVKT-------LFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPN   76 (113)
T ss_dssp             CHHHHHHHHHHHHSS--EEEEECTTCHHHHHHHH-------HHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHHHHHHhcCC--EEEEECCCChhHHHHHH-------HHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCE
Confidence            346666777777777  44466789999997732       112223346666665542233   33 455678899999


Q ss_pred             EEEEeCCCCeeE
Q 021440          199 VLVIDPITGQKI  210 (312)
Q Consensus       199 i~IIdprTGe~v  210 (312)
                      |. |+   |+.+
T Consensus        77 if-i~---g~~i   84 (113)
T 3rhb_A           77 VF-VC---GKHI   84 (113)
T ss_dssp             EE-ET---TEEE
T ss_pred             EE-EC---CEEE
Confidence            94 54   6654

>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=88.91  E-value=0.07  Score=43.53  Aligned_cols=42  Identities=17%  Similarity=0.112  Sum_probs=37.7

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      .+-+|.|.-+||+..|...=.+.|++++|||+.||.++-+..
T Consensus        18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~   59 (129)
T 2lva_A           18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDER   59 (129)
Confidence            455899999998888999999999999999999999997764

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=89.30  E-value=2.3  Score=29.96  Aligned_cols=75  Identities=13%  Similarity=0.046  Sum_probs=44.4

Q ss_pred             EEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChH
Q 021440          141 VNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQ  220 (312)
Q Consensus       141 Vniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~  220 (312)
                      +.+..++|..|+.+.+-       .+-.+-.|...-++.+......+...|....+|++. +|   |+.+   .|+    
T Consensus         4 ~~y~~~~C~~C~~~~~~-------l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~-~~---g~~i---~g~----   65 (82)
T 1fov_A            4 EIYTKETCPYCHRAKAL-------LSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF-ID---AQHI---GGY----   65 (82)
T ss_dssp             EEEECSSCHHHHHHHHH-------HHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE-ET---TEEE---ESH----
T ss_pred             EEEECCCChhHHHHHHH-------HHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE-EC---CEEE---eCH----
Confidence            34567899999977421       111233466555544333344678889999999984 44   6643   332    


Q ss_pred             HHHHHHHHHHhhCCCC
Q 021440          221 PLGEMLLPFMDRSPRK  236 (312)
Q Consensus       221 ~fl~~L~~fl~~~~~~  236 (312)
                         ..+.++++.+.+.
T Consensus        66 ---~~i~~~~~~g~l~   78 (82)
T 1fov_A           66 ---DDLYALDARGGLD   78 (82)
T ss_dssp             ---HHHHHHHHTTCSH
T ss_pred             ---HHHHHHHHCCCHH
Confidence               2355666666654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=89.06  E-value=2.8  Score=34.85  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +++..+.+...|++ ||+   |+.+  +.|..++++|.+.|...+.+
T Consensus       141 ~~a~~~gv~gtPt~-vin---g~~~--~~g~~~~~~l~~~i~~~l~~  181 (195)
T 2znm_A          141 KLTEQYRIDSTPTV-IVG---GKYR--VIFNNGFDGGVHTIKELVAK  181 (195)
T ss_dssp             HHHHHTTCCSSSEE-EET---TTEE--ECCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCeE-EEC---CEEE--EcCCCCHHHHHHHHHHHHHH
Confidence            34567788999995 455   5543  46777888988888888765

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=88.21  E-value=1.2  Score=36.73  Aligned_cols=72  Identities=10%  Similarity=0.129  Sum_probs=44.3

Q ss_pred             HHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC--hhH-HHHHHhcCCCCCCeEEEE
Q 021440          126 EKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT--SEG-WKVCSFYNMDSIPAVLVI  202 (312)
Q Consensus       126 ~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds--~EG-~~~~~~Y~~~~~P~i~II  202 (312)
                      .+.+..+.+.++ |+| +..+||..|+.+.+       +.+-++-.|..+.++.+.  ++. ..+...|.+..+|+|. +
T Consensus        39 ~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if-i  108 (146)
T 2ht9_A           39 VNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF-V  108 (146)
T ss_dssp             HHHHHHHHHHCS-EEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE-E
T ss_pred             HHHHHHHhcCCC-EEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE-E
Confidence            444455555555 444 67889999998743       222234467666665542  222 2477889999999984 4


Q ss_pred             eCCCCeeE
Q 021440          203 DPITGQKI  210 (312)
Q Consensus       203 dprTGe~v  210 (312)
                      +   |+.+
T Consensus       109 ~---G~~i  113 (146)
T 2ht9_A          109 N---GTFI  113 (146)
T ss_dssp             T---TEEE
T ss_pred             C---CEEE
Confidence            4   6644

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=87.89  E-value=2.6  Score=30.66  Aligned_cols=70  Identities=19%  Similarity=0.060  Sum_probs=44.0

Q ss_pred             EeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-H----HHHHHhcCCCCCCeEEEEeCCCCeeEEEecCC
Q 021440          142 NLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-G----WKVCSFYNMDSIPAVLVIDPITGQKICSWCGM  216 (312)
Q Consensus       142 niq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-G----~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~  216 (312)
                      -+..++|..|+++.+       +.+-++-.|.+..++....+ .    ..+...|.....|.|.+ +   |+.   +.|+
T Consensus        16 ly~~~~Cp~C~~~~~-------~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~-~---g~~---i~G~   81 (92)
T 3ic4_A           16 MYGLSTCPHCKRTLE-------FLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK-G---DKH---VLGY   81 (92)
T ss_dssp             EEECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE-T---TEE---EESC
T ss_pred             EEECCCChHHHHHHH-------HHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE-C---CEE---EeCC
Confidence            345679999988632       22223445766666543332 2    56777888899999986 3   543   4565


Q ss_pred             CChHHHHHHH
Q 021440          217 INPQPLGEML  226 (312)
Q Consensus       217 ~~~~~fl~~L  226 (312)
                       +++++.+.|
T Consensus        82 -~~~~l~~~l   90 (92)
T 3ic4_A           82 -NEEKLKELI   90 (92)
T ss_dssp             -CHHHHHHHH
T ss_pred             -CHHHHHHHh
Confidence             777766554

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=87.51  E-value=1.3  Score=33.11  Aligned_cols=60  Identities=12%  Similarity=0.061  Sum_probs=37.9

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCC--hhHH-HHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDT--SEGW-KVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds--~EG~-~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      ++.+..+||..|+.+.+       +.+-+...   |.+.-++.+.  ++.. .+...|.+.++|+|. ++   |+.+
T Consensus        14 v~~f~~~~C~~C~~~~~-------~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~-~~---g~~i   79 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQE-------LLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF-IG---KECI   79 (105)
T ss_dssp             EEEEECSSCHHHHHHHH-------HHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE-ET---TEEE
T ss_pred             EEEEEcCCCHhHHHHHH-------HHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE-EC---CEEE
Confidence            44467889999998743       12222334   7777665543  2332 467789999999984 44   6654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=87.35  E-value=1.1  Score=35.28  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             cccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc------cEEEEEeccCCh--hH-HHHH
Q 021440          118 HVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV------NFIFWQEYDDTS--EG-WKVC  188 (312)
Q Consensus       118 ~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~------nFIfwq~~~ds~--EG-~~~~  188 (312)
                      ..|......+.+..+.+..+  +|.+..+||..|+.+         ++.++++      .|..+-++.+..  +. ..+.
T Consensus         7 ~~~~~~~~~~~~~~~i~~~~--Vvvf~~~~Cp~C~~a---------lk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~   75 (118)
T 3c1r_A            7 HHMVSQETIKHVKDLIAENE--IFVASKTYCPYCHAA---------LNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALY   75 (118)
T ss_dssp             -CCSCHHHHHHHHHHHHHSS--EEEEECSSCHHHHHH---------HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHccCc--EEEEEcCCCcCHHHH---------HHHHHHHcCCCCCCeEEEECccCCChHHHHHHHH
Confidence            34556666666776666666  333667899999987         2334432      344444443321  12 3477


Q ss_pred             HhcCCCCCCeEEEEeCCCCeeE
Q 021440          189 SFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       189 ~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      ..|...++|.| +|+   |+.+
T Consensus        76 ~~~g~~tvP~v-fi~---g~~i   93 (118)
T 3c1r_A           76 EINGQRTVPNI-YIN---GKHI   93 (118)
T ss_dssp             HHHSCCSSCEE-EET---TEEE
T ss_pred             HHhCCCCcCEE-EEC---CEEE
Confidence            78899999988 454   6654

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=87.08  E-value=2.6  Score=31.98  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=43.1

Q ss_pred             ecCCCcccchhhcccCCCHHHHHHhhccEE-EEEeccC-ChhHHHHHHhc--CCCCCCeEEEEeCCCCeeEEEecCCCCh
Q 021440          144 QSTKEFSSLMLNRDTWGNEAVSQIISVNFI-FWQEYDD-TSEGWKVCSFY--NMDSIPAVLVIDPITGQKICSWCGMINP  219 (312)
Q Consensus       144 q~~~~f~c~~lnRDvw~~~~V~~~i~~nFI-fwq~~~d-s~EG~~~~~~Y--~~~~~P~i~IIdprTGe~v~~~~G~~~~  219 (312)
                      ..+||..|.+.          +++++++=| |-.++++ ++++.+.....  ...+.|.|.|-|   |..+   .| .++
T Consensus        10 s~~~Cp~C~~a----------K~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~D---g~~l---~~-~~~   72 (92)
T 2lqo_A           10 TTSWCGYCLRL----------KTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFAD---GSTL---TN-PSA   72 (92)
T ss_dssp             ECTTCSSHHHH----------HHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETT---SCEE---ES-CCH
T ss_pred             cCCCCHhHHHH----------HHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeC---CEEE---eC-CCH
Confidence            35799999887          567766522 2334444 35555544332  457899998766   4433   33 467


Q ss_pred             HHHHHHHHHHH
Q 021440          220 QPLGEMLLPFM  230 (312)
Q Consensus       220 ~~fl~~L~~fl  230 (312)
                      +++.+.|.+..
T Consensus        73 ~el~~~L~el~   83 (92)
T 2lqo_A           73 DEVKAKLVKIA   83 (92)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            77777776653

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=87.00  E-value=3.9  Score=28.13  Aligned_cols=70  Identities=13%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCCh
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINP  219 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~  219 (312)
                      ++.+..+||..|+.+..-       .+-++-.|....++. .++.......|.+..+|++.+ +   |+.   +.|+ ++
T Consensus         3 i~~y~~~~C~~C~~~~~~-------l~~~~i~~~~~di~~-~~~~~~~~~~~~~~~vP~l~~-~---g~~---~~g~-~~   66 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKA-------LDRAGLAYNTVDISL-DDEARDYVMALGYVQAPVVEV-D---GEH---WSGF-RP   66 (75)
T ss_dssp             EEEEECTTCHHHHHHHHH-------HHHTTCCCEEEETTT-CHHHHHHHHHTTCBCCCEEEE-T---TEE---EESC-CH
T ss_pred             EEEEeCCCChHHHHHHHH-------HHHcCCCcEEEECCC-CHHHHHHHHHcCCCccCEEEE-C---CeE---EcCC-CH
Confidence            345677899999986321       111222355544332 234344445789999999873 3   553   4564 56


Q ss_pred             HHHHHH
Q 021440          220 QPLGEM  225 (312)
Q Consensus       220 ~~fl~~  225 (312)
                      +++.+.
T Consensus        67 ~~l~~~   72 (75)
T 1r7h_A           67 ERIKQL   72 (75)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            654433

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=86.29  E-value=1.4  Score=30.94  Aligned_cols=44  Identities=16%  Similarity=0.076  Sum_probs=38.8

Q ss_pred             chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +..-++.|.+.|++  |-|.+.|++-|..++.|++.|.+...+-..
T Consensus         4 ~~p~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf~~   47 (56)
T 2juj_A            4 SPQLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREFVS   47 (56)
T ss_dssp             CHHHHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHSCC
T ss_pred             CCCChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHHHc
Confidence            34457799999999  999999999999999999999999988653

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=86.17  E-value=2.7  Score=31.89  Aligned_cols=67  Identities=10%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             HHHHHHcCCeEEEEeec----CCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          129 KDAALAQDKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       129 ~~~Ak~~~KwLLVniq~----~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      +....+.++ |+||..+    +||..|+.+.          .++++   .|...-++.+..-...+...+....+|.|. 
T Consensus        10 ~~~~i~~~~-vvvf~~g~~~~~~C~~C~~~~----------~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~-   77 (105)
T 2yan_A           10 LKVLTNKAS-VMLFMKGNKQEAKCGFSKQIL----------EILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY-   77 (105)
T ss_dssp             HHHHHTSSS-EEEEESBCSSSBCTTHHHHHH----------HHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE-
T ss_pred             HHHHhccCC-EEEEEecCCCCCCCccHHHHH----------HHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE-
Confidence            344444555 6666552    7999999864          33333   455554444322223466778889999984 


Q ss_pred             EeCCCCeeE
Q 021440          202 IDPITGQKI  210 (312)
Q Consensus       202 IdprTGe~v  210 (312)
                      |+   |+.+
T Consensus        78 i~---g~~i   83 (105)
T 2yan_A           78 VK---GELV   83 (105)
T ss_dssp             ET---TEEE
T ss_pred             EC---CEEE
Confidence            44   6654

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.77  E-value=1.2  Score=32.52  Aligned_cols=43  Identities=16%  Similarity=0.108  Sum_probs=37.9

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      +..+.+.++.++=-..|.++-+..|++++||++.||+..+...
T Consensus        17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms   59 (67)
T 2dhy_A           17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN   59 (67)
T ss_dssp             CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            3567888888887888999999999999999999999998864

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=85.61  E-value=1.4  Score=35.61  Aligned_cols=45  Identities=13%  Similarity=0.235  Sum_probs=41.5

Q ss_pred             CCchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            3 SESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         3 ~~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      .++..+.+.|.+++++  |=+...|++-|..++.|.+.|++-.|.+.
T Consensus         3 ~l~~~e~~~v~~l~~M--GFp~~~~~kAl~~~g~~~e~amewL~~h~   47 (118)
T 4ae4_A            3 HMSPSERQCVETVVNM--GYSYECVLRAMKAAGANIEQILDYLFAHG   47 (118)
T ss_dssp             CSCHHHHHHHHHHHHT--TCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence            4678899999999999  99999999999999999999999999864

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=84.19  E-value=2  Score=33.18  Aligned_cols=60  Identities=7%  Similarity=-0.096  Sum_probs=37.3

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCC--hhH-HHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDT--SEG-WKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds--~EG-~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      +|.+..+||..|+.+.+-+ ..      +...   |..+-++.+.  .+. ..+...|.+.++|.|. ++   |+.+
T Consensus        21 vv~f~~~~Cp~C~~~~~~L-~~------~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~-i~---g~~i   86 (114)
T 2hze_A           21 VTIFVKYTCPFCRNALDIL-NK------FSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF-FG---KTSI   86 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHH-TT------SCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE-ET---TEEE
T ss_pred             EEEEEeCCChhHHHHHHHH-HH------cCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE-EC---CEEE
Confidence            4556788999999875321 11      1123   7666655443  122 3577889999999874 44   6654

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=83.28  E-value=2.5  Score=28.52  Aligned_cols=39  Identities=15%  Similarity=0.098  Sum_probs=34.6

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      -++.|...|+.  |-|.+.|++-|..++.|+|.|.+...+.
T Consensus         4 ~e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~ef   42 (46)
T 2oo9_A            4 LSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF   42 (46)
T ss_dssp             HHHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence            35689999998  9999999999999999999999887654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=81.88  E-value=3.4  Score=29.11  Aligned_cols=65  Identities=14%  Similarity=0.223  Sum_probs=38.2

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-hhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCC
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-SEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN  218 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~  218 (312)
                      ++.+..+||..|+.+.+-+       +-.+-.|..  ++++. ++.......|.+..+|++ +++   |+.   +.| .+
T Consensus         3 v~~f~~~~C~~C~~~~~~l-------~~~~i~~~~--vdi~~~~~~~~~~~~~g~~~vP~~-~~~---g~~---~~g-~~   65 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAM-------ENRGFDFEM--INVDRVPEAAEALRAQGFRQLPVV-IAG---DLS---WSG-FR   65 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHH-------HHTTCCCEE--EETTTCHHHHHHHHHTTCCSSCEE-EET---TEE---EES-CC
T ss_pred             EEEEcCCCChhHHHHHHHH-------HHCCCCeEE--EECCCCHHHHHHHHHhCCCccCEE-EEC---CEE---Eec-CC
Confidence            4557788999999874321       112223544  45553 455555556899999998 444   553   345 35


Q ss_pred             hHH
Q 021440          219 PQP  221 (312)
Q Consensus       219 ~~~  221 (312)
                      +++
T Consensus        66 ~~~   68 (81)
T 1h75_A           66 PDM   68 (81)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=81.80  E-value=1.5  Score=34.58  Aligned_cols=34  Identities=38%  Similarity=0.407  Sum_probs=29.5

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHH
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAIL   43 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~   43 (312)
                      .+.|.-.|+= +|++.+.|++-|+.|+|||=.||-
T Consensus        66 ~edi~lv~~q-~~vs~~~A~~aL~~~~gDiv~Ai~   99 (102)
T 1tr8_A           66 EDDIELVMNQ-TGASREDATRALQETGGDLAEAIM   99 (102)
T ss_dssp             HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHH
Confidence            3557777777 899999999999999999998874

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=81.24  E-value=7.3  Score=33.67  Aligned_cols=81  Identities=7%  Similarity=0.096  Sum_probs=46.5

Q ss_pred             CccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCC
Q 021440          116 PFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       116 P~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      |+...-..++.+-+.  +...+++.+.+.+..+..+..+         ..++.....|....-.++  -..+++.|++..
T Consensus       139 ~l~~~~~~~l~~~~~--~~~~~~~al~f~~~~~~~~~~~---------~~d~~~~~~i~v~~~~~~--~~~l~~~f~v~~  205 (244)
T 3q6o_A          139 PLEPAXLEEIDGFFA--RNNEEYLALIFEXGGSYLAREV---------ALDLSQHKGVAVRRVLNT--EANVVRKFGVTD  205 (244)
T ss_dssp             CCSCCCHHHHHTHHH--HCCCSEEEEEEECTTCCHHHHH---------HHHTTTCTTEEEEEEETT--CHHHHHHHTCCC
T ss_pred             CcccccHHHHHHHhh--cCCCceEEEEEEECCcchHHHH---------HHHhccCCceEEEEEeCc--hHHHHHHcCCCC
Confidence            333333344444443  3777888888877653322222         233443333333322222  367899999999


Q ss_pred             CCeEEEEeCCCCeeE
Q 021440          196 IPAVLVIDPITGQKI  210 (312)
Q Consensus       196 ~P~i~IIdprTGe~v  210 (312)
                      ||+++++++ .|+..
T Consensus       206 ~Pslvl~~~-~g~~~  219 (244)
T 3q6o_A          206 FPSCYLLFR-NGSVS  219 (244)
T ss_dssp             SSEEEEEET-TSCEE
T ss_pred             CCeEEEEeC-CCCeE
Confidence            999999996 56644

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=81.09  E-value=7.8  Score=35.56  Aligned_cols=109  Identities=7%  Similarity=0.038  Sum_probs=60.2

Q ss_pred             CCccccccccHHHHHHHHHHc-CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHH---
Q 021440          115 PPFHVMFNGSFEKAKDAALAQ-DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVC---  188 (312)
Q Consensus       115 PP~~l~~~gsf~~A~~~Ak~~-~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~---  188 (312)
                      |.+.-+-..++.+..   ... .+..+|.+...++..|..+-.. |  ..|.+-.+.  .+.|.-++.+.-  ..++   
T Consensus       226 p~v~elt~~~~~~~~---~~~~~~~~~l~f~~~~~~~~~~~~~~-~--~~vA~~~~~~~~~~f~~id~~~~--~~~~~~~  297 (350)
T 1sji_A          226 PTLRRLRPEDMFETW---EDDLNGIHIVAFAERSDPDGYEFLEI-L--KQVARDNTDNPDLSIVWIDPDDF--PLLVAYW  297 (350)
T ss_dssp             CSEEECCTTTHHHHH---HSCSSSEEEEEECCTTSHHHHHHHHH-H--HHHHHHGGGCSSCCEEEECGGGC--HHHHHHH
T ss_pred             cchhhcChhhHHHHh---cCCCCCcEEEEEEcCCCccHHHHHHH-H--HHHHHHhCCCCceEEEEECchhh--HHHHHHH
Confidence            444445555665532   221 1433333666666656654322 2  224333433  566665654432  2355   


Q ss_pred             -HhcCCC-CCCeEEEEeCCCCeeEEE-ec---CCCChHHHHHHHHHHHh
Q 021440          189 -SFYNMD-SIPAVLVIDPITGQKICS-WC---GMINPQPLGEMLLPFMD  231 (312)
Q Consensus       189 -~~Y~~~-~~P~i~IIdprTGe~v~~-~~---G~~~~~~fl~~L~~fl~  231 (312)
                       +.+.++ .+|.|+|+++.+|.+.+. +.   |.++++.+.+-|..|++
T Consensus       298 ~~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          298 EKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             HHHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred             HhhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence             678786 699999999877754432 32   46788877666666664

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=80.87  E-value=3.7  Score=29.78  Aligned_cols=52  Identities=8%  Similarity=-0.014  Sum_probs=32.4

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhc-CCCCCCeEE
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFY-NMDSIPAVL  200 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y-~~~~~P~i~  200 (312)
                      ++.++.+||..|+.+.+       +.+-.+-.|..  ++++......+...| ...++|.|.
T Consensus         8 v~~y~~~~C~~C~~~~~-------~L~~~~i~~~~--vdv~~~~~~~l~~~~~~~~~vP~l~   60 (89)
T 2klx_A            8 IILYTRPNCPYCKRARD-------LLDKKGVKYTD--IDASTSLRQEMVQRANGRNTFPQIF   60 (89)
T ss_dssp             EEEESCSCCTTTHHHHH-------HHHHHTCCEEE--ECSCHHHHHHHHHHHHSSCCSCEEE
T ss_pred             EEEEECCCChhHHHHHH-------HHHHcCCCcEE--EECCHHHHHHHHHHhCCCCCcCEEE
Confidence            45567789999998632       11112224544  455522344677888 899999985

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=80.46  E-value=5.1  Score=30.58  Aligned_cols=62  Identities=13%  Similarity=0.226  Sum_probs=37.3

Q ss_pred             HcCCeEEEEeec----CCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCC
Q 021440          134 AQDKWLLVNLQS----TKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPIT  206 (312)
Q Consensus       134 ~~~KwLLVniq~----~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprT  206 (312)
                      +.+| |+||..+    ++|..|+...          +++++   .|...-++.+..--..+...+....+|.|. |+   
T Consensus        13 ~~~~-vvvy~~g~~~~~~Cp~C~~ak----------~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if-i~---   77 (109)
T 1wik_A           13 NKAS-VMLFMKGNKQEAKCGFSKQIL----------EILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLY-VR---   77 (109)
T ss_dssp             TTSS-EEEEESSTTTCCCSSTHHHHH----------HHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE-CS---
T ss_pred             ccCC-EEEEEecCCCCCCCchHHHHH----------HHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE-EC---
Confidence            4445 6677765    7999999773          44443   355554443322223466677888999864 44   


Q ss_pred             CeeE
Q 021440          207 GQKI  210 (312)
Q Consensus       207 Ge~v  210 (312)
                      |+.+
T Consensus        78 g~~i   81 (109)
T 1wik_A           78 GDLV   81 (109)
T ss_dssp             SSEE
T ss_pred             CEEE
Confidence            6643

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=80.36  E-value=6.4  Score=32.45  Aligned_cols=40  Identities=10%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             HHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          186 KVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       186 ~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +++..+.+...|+++ |+   |+.+  ..|. ++++|.+.|...+.+
T Consensus       146 ~~a~~~gv~gtPt~v-in---g~~~--~~g~-~~~~l~~~i~~~~~~  185 (193)
T 2rem_A          146 AYALKVRPVGTPTIV-VN---GRYM--VTGH-DFEDTLRITDYLVSR  185 (193)
T ss_dssp             HHHHHHCCSSSSEEE-ET---TTEE--ECCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCeEE-EC---CEEE--ecCC-CHHHHHHHHHHHHHH
Confidence            455678899999954 55   5544  3677 889998888887754

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=80.20  E-value=3.2  Score=30.20  Aligned_cols=57  Identities=5%  Similarity=0.003  Sum_probs=35.2

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhc---cEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeE
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISV---NFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKI  210 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~---nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v  210 (312)
                      ++.++.++|..|+.+          +.++++   .|...-++.+......+...|....+|.+ +++   |+.+
T Consensus         8 v~ly~~~~C~~C~~~----------~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l-~~~---g~~i   67 (92)
T 2khp_A            8 VIIYTRPGCPYCARA----------KALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQI-FIG---SVHV   67 (92)
T ss_dssp             EEEEECTTCHHHHHH----------HHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEE-EET---TEEE
T ss_pred             EEEEECCCChhHHHH----------HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE-EEC---CEEE
Confidence            445677899999876          344443   35555444332333467778889999965 444   5543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	9e-29
d1v92a_	46	a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-	8e-05

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 9e-29
 Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 1/136 (0%)

Query: 99  ASTTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDT 158
           +S  D     LA L+RPP  +M  GSFE AK+    Q+KWL++N+Q+ ++F+   LNRD 
Sbjct: 5   SSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDV 64

Query: 159 WGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMIN 218
           W NEAV  II  +FIFWQ Y D+ EG +   FY +   P V ++DP TGQK+  W   ++
Sbjct: 65  WSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLD 123

Query: 219 PQPLGEMLLPFMDRSP 234
                + +  F+    
Sbjct: 124 VSSFLDQVTGFLGEHG 139

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 46

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (87), Expect = 8e-05
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 7  DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF 46
          +++  +  F+ +  GA    A   L++  W L  A+  F+
Sbjct: 4  ERQDALREFVAVT-GAEEDRARFFLESAGWDLQIALASFY 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	100.0
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	99.56
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.45
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.38
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.09
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.06
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.04
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.03
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.96
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.93
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.92
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.89
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.85
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.8
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.79
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.71
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.7
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.68
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.61
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.52
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.48
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.43
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.41
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.4
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.4
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.37
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.34
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.25
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.24
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.19
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.06
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.04
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.0
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	97.94
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.92
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	97.89
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	97.88
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.87
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.86
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.85
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.84
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	97.8
d1oaia_	59	FG-binding, C-terminal domain of TAP {Human (Homo	97.72
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.59
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	97.55
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.14
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.04
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	96.77
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.74
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.61
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.55
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	96.5
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.47
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.45
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.35
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	96.19
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	96.11
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	96.04
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.01
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	95.92
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.89
d1wjka_	100	Thioredoxin-like structure containing protein C330	95.64
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	95.6
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	95.57
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	95.33
d1vdla_	80	Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M	95.3
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.24
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	95.09
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	94.86
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	94.77
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	94.64
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	94.61
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.3
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	94.07
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	93.7
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	93.49
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	93.34
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	92.62
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	92.37
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	92.3
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	92.0
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	91.38
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	91.26
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	90.59
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	90.55
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	90.48
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	90.32
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	90.19
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	89.67
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	89.57
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	89.22
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	89.17
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	88.51
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	88.12
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	86.41
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	83.91
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	83.2
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	81.79
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	81.33
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	80.6
d3e46a1	42	Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal	80.57

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-37  Score=259.27  Aligned_cols=133  Identities=40%  Similarity=0.790  Sum_probs=126.9

Q ss_pred             CCcchhHHHhhhcCCCccccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC
Q 021440          101 TTDTSHDILASLYRPPFHVMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD  180 (312)
Q Consensus       101 ~~~~~~~~La~lfrPP~~l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d  180 (312)
                      +...+..+||+||+||++|+|+|+|++|++.||+++|||||||+++||++|+.|+|+||+|++|++++++|||+|+++.+
T Consensus         7 ~~~~~~~~~a~~~~pp~~i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~   86 (147)
T d2dlxa1           7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHD   86 (147)
T ss_dssp             CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESS
T ss_pred             CcccchHHHHHhhCCCccccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeeccc
Confidence            35566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhCC
Q 021440          181 TSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       181 s~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      +++|..|++.|++..||+|+||||+||+.++.|.| +++++|++.|++||++++
T Consensus        87 ~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~-~~~~~fl~~L~~fl~~~~  139 (147)
T d2dlxa1          87 SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG  139 (147)
T ss_dssp             SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred             chhhhhhhhheecCceeEEEEEeCCCCeEecccCC-CCHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999988865 799999999999998764

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.4e-15  Score=103.57  Aligned_cols=45  Identities=20%  Similarity=0.417  Sum_probs=41.8

Q ss_pred             chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +.+++++|.|||+| ||+++++|++||++++|||+.||++||+.++
T Consensus         2 a~~~~~lI~qF~~i-Tg~~~~~A~~~Le~~~w~Le~Ai~~yfe~gg   46 (46)
T d1v92a_           2 AEERQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDGG   46 (46)
T ss_dssp             TTHHHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred             CccHHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHHHHhcCC
Confidence            44799999999999 8999999999999999999999999999763

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.1e-14  Score=114.39  Aligned_cols=111  Identities=19%  Similarity=0.213  Sum_probs=87.7

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHh-cCCCCCCe
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSF-YNMDSIPA  198 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~-Y~~~~~P~  198 (312)
                      -++ +|++|++.|++++|+|||+|+.+||.+|+.|.+.++.+++|.+ ++++||+..++.+...  ....+ ++...+|+
T Consensus        10 ~w~-~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~--~~~~~~~~~~~~Pt   85 (135)
T d1sena_          10 HWR-TLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEEP--KDEDFSPDGGYIPR   85 (135)
T ss_dssp             CBC-CHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGSC--SCGGGCTTCSCSSE
T ss_pred             eee-EHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCCCcCH--HHHHHHhhccccee
Confidence            343 8999999999999999999999999999999999999999988 6789999988766432  22333 33456899


Q ss_pred             EEEEeCCCCeeEEEecC----------CCChHHHHHHHHHHHhhCCC
Q 021440          199 VLVIDPITGQKICSWCG----------MINPQPLGEMLLPFMDRSPR  235 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G----------~~~~~~fl~~L~~fl~~~~~  235 (312)
                      ++++|| .|+.+....|          +.+.+.+++.+++.+++-+.
T Consensus        86 ~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  131 (135)
T d1sena_          86 ILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG  131 (135)
T ss_dssp             EEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred             EEEECC-CCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHHHHhhc
Confidence            999998 5877655444          34678888888887766443

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1e-12  Score=103.73  Aligned_cols=103  Identities=15%  Similarity=0.235  Sum_probs=85.6

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEec--cCChhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEY--DDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~--~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      -.+++.++.  +.++|++||+++++||.+|+.|...++.++.|.+..+ +|+++.++  .+......+++.|++..||++
T Consensus        10 ~~~~~~~l~--~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   86 (117)
T d2fwha1          10 VDELNQALV--EAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTI   86 (117)
T ss_dssp             HHHHHHHHH--HHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHH--HcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhhceEE
Confidence            345666664  4468999999999999999999999999999999886 45555555  455677889999999999999


Q ss_pred             EEEeCCCCeeEE--EecCCCChHHHHHHHHH
Q 021440          200 LVIDPITGQKIC--SWCGMINPQPLGEMLLP  228 (312)
Q Consensus       200 ~IIdprTGe~v~--~~~G~~~~~~fl~~L~~  228 (312)
                      +++|+ .|+.+.  .+.|+.++++|++.|++
T Consensus        87 ~~~~~-~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          87 LFFDG-QGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             EEECT-TSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EEEeC-CCcEEecccccccCCHHHHHHHHhc
Confidence            99998 587664  47899999999988864

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=2.4e-10  Score=90.14  Aligned_cols=101  Identities=12%  Similarity=0.184  Sum_probs=80.4

Q ss_pred             ccccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCC
Q 021440          119 VMFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSI  196 (312)
Q Consensus       119 l~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~  196 (312)
                      +-....|++.+..|++.+|++||+++++||.+|+.|..      .+.++.++  +++|..++.+  +...++..|++..+
T Consensus        11 i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p------~~~~l~~~~~~~~~~~vd~~--~~~~l~~~~~V~~~   82 (114)
T d1xfla_          11 CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAP------FFADLAKKLPNVLFLKVDTD--ELKSVASDWAIQAM   82 (114)
T ss_dssp             ESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHCSSEEEEEEETT--TSHHHHHHTTCCSS
T ss_pred             EcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCcccccc------chhhhcccccccceeEEEee--eceeeccccceeee
Confidence            33566799999999999999999999999999999964      34444332  5777766555  45678899999999


Q ss_pred             CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          197 PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       197 P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      |++.++.  .|+.+..+.|. +++++.+.|.++|
T Consensus        83 Pt~~~~~--~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          83 PTFMFLK--EGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             SEEEEEE--TTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEEE--CCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            9999995  69999999995 7777777776654

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.06  E-value=5e-10  Score=88.11  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=81.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ....|++.+..++..+|.++|+++++||.+|+.+...+   +.+.+-.+.++.|..++.+.  ...++..|++..+|++.
T Consensus         9 t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~   83 (112)
T d1ep7a_           9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFH   83 (112)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEE
T ss_pred             CHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhh---hhhhhcccceEEEEEeeccc--cccccccccccCCCEEE
Confidence            45679999999999999999999999999999997655   56666666678999887764  46889999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHH
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~  227 (312)
                      ++.  .|+.+..+.|. +++++.+.|.
T Consensus        84 ~~~--~G~~v~~~~G~-~~~~l~~~i~  107 (112)
T d1ep7a_          84 VYK--DGVKADDLVGA-SQDKLKALVA  107 (112)
T ss_dssp             EEE--TTEEEEEEESC-CHHHHHHHHH
T ss_pred             EEE--CCEEEEEEeCc-CHHHHHHHHH
Confidence            986  69999999994 6665444333

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.04  E-value=3.9e-10  Score=87.44  Aligned_cols=98  Identities=15%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEe
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVID  203 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IId  203 (312)
                      +|++.+   .+.+|++||+++++||.+|+.|...+   ..+..-.+.++.|..++.+.  ...+++.|++..+|++.++.
T Consensus        10 ~f~~~v---~~s~kpvlv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~Pt~~~~~   81 (107)
T d1dbya_          10 TFKNVV---LESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVFK   81 (107)
T ss_dssp             HHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEES
T ss_pred             HHHHHH---HhCCCcEEEEEECCCCCCccccChHH---HHHHHhhcccceEEEEeccc--chhHHHHhcccceEEEEEEE
Confidence            454443   45789999999999999999997633   45566667788888887775  45789999999999999996


Q ss_pred             CCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          204 PITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       204 prTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                        .|+.+..+.|..+.+++.+.|.++|+
T Consensus        82 --~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          82 --GGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             --SSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             --CCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence              69999999999999999999998874

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.03  E-value=7.7e-10  Score=85.85  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=83.1

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++.+   .+.+|++||+++++||.+|+.|.+.+   +.+..-...++.|..++.+  +...+++.|++..+|++.+
T Consensus         9 ~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~I~~~Pt~~~   80 (108)
T d1thxa_           9 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEID--PNPTTVKKYKVEGVPALRL   80 (108)
T ss_dssp             GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEEST--TCHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHH---HhCCCcEEEEEECCCCCCccccchHH---HHHHHhcCCcceeceeccc--ccHHHHHHhcccCCCEEEE
Confidence            35676544   35679999999999999999998755   5677777778888888776  4667899999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.  .|+.+..+.|..+++++.+.|.+.|+
T Consensus        81 ~~--~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          81 VK--GEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EE--CCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            97  59999999999999999988888764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.96  E-value=1.1e-09  Score=84.29  Aligned_cols=99  Identities=17%  Similarity=0.264  Sum_probs=79.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++..   .+.+|.+||+++++||.+|+.|...+   ..+.+-.+.++.+..++.+  +...+++.|++..+|++++
T Consensus         6 d~~f~~~v---~~~~~~vlv~F~a~wC~~C~~~~~~~---~~l~~~~~~~~~~~~v~~d--~~~~l~~~~~V~~~Pt~~~   77 (104)
T d1fb6a_           6 DSSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTD--EAPGIATQYNIRSIPTVLF   77 (104)
T ss_dssp             TTTHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCSSSEEEE
T ss_pred             hhhHHHHH---HcCCCcEEEEEEcCccCCccccCchh---HHHHHhhcCccceeEEecc--cchhhhhhcceeeeeEEEE
Confidence            35677655   45689999999999999999997543   2455566667778777666  4567999999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +.  .|+.+..+.|..+++.+.+.|.++|
T Consensus        78 ~~--~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          78 FK--NGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EE--TTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EE--cCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            85  5999999999999999888887764

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-09  Score=83.88  Aligned_cols=98  Identities=13%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCe
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPA  198 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~  198 (312)
                      ...+|++++..+  .+|.++|+++++||.+|+.|.      +.+.++.++  +..|+.++.+  +...++..|++..+|+
T Consensus         8 s~~~f~~~l~~~--~~klvvv~F~a~wC~~Ck~~~------p~~~~la~~~~~~~f~~vd~d--~~~~l~~~~~v~~~Pt   77 (107)
T d1gh2a_           8 SDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIA------PAFSSMSNKYPQAVFLEVDVH--QCQGTAATNNISATPT   77 (107)
T ss_dssp             SGGGHHHHHHHT--TTSCEEEEEECSSCHHHHHHH------HHHHHHHHHCTTSEEEEEETT--TSHHHHHHTTCCSSSE
T ss_pred             CHHHHHHHHHhC--CCCEEEEEEECCCCCCccccc------hhhhccccccccccccccccc--cchhhhhhcCceeceE
Confidence            456788887654  489999999999999999995      444554444  5788888766  4567889999999999


Q ss_pred             EEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          199 VLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +.++-  .|+.+..+.|. +++.+.+.|.++|+
T Consensus        78 ~~~~~--~G~~v~~~~G~-~~~~l~~~i~k~le  107 (107)
T d1gh2a_          78 FQFFR--NKVRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEEEE--TTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             EEEEE--CCEEEEEEeCC-CHHHHHHHHHHhhC
Confidence            99994  69999999995 89999999988874

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=2.8e-09  Score=82.43  Aligned_cols=99  Identities=17%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++.+   .+.+|.+||+++++||.+|+.+...+   ..+......++.+..++.+.  ...++..|++..+|++.+
T Consensus         9 ~~~f~~~v---~~~~~~v~v~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~PT~~~   80 (108)
T d2trxa_           9 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CTTHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHH---HhCCCcEEEEEECCCCCCccccCcHH---HHHHHHhhcceeeeeccccc--hhhHHHHhCCCcEEEEEE
Confidence            45566533   45689999999999999999987655   35556667788999888774  457999999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +.  .|+.+..+.|..++++|.+.|.+-|
T Consensus        81 ~~--~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          81 FK--NGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EE--CCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            86  5999999999999999888887655

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.89  E-value=1.6e-09  Score=83.62  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|++++    +.+|++||+++++||.+|+.|...+.   .+..-.+.++.|..++.+..  ..++..|++..+|++.+
T Consensus         7 ~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~---~l~~~~~~~~~~~~vd~~~~--~~~~~~~~V~~~Pt~~~   77 (105)
T d1nw2a_           7 DANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLE---EFAEAHADKVTVAKLNVDEN--PETTSQFGIMSIPTLIL   77 (105)
T ss_dssp             TTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHH---HHHHHHTTTCEEEEEETTTC--HHHHHHTTCCBSSEEEE
T ss_pred             HHHHHHHH----hCCCcEEEEEECCCCCCcccccchhh---hhhhhcCCceEEEEEECCCC--cccHHHCCcceeeEEEE
Confidence            45677754    57899999999999999999976553   34455566799998877654  56789999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +.  .|+.+.++.|..+.+++.+.|.+.|
T Consensus        78 ~~--~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          78 FK--GGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             EE--CCEEEEEEECCCCHHHHHHHHHHHh
Confidence            96  5999999999999888777665544

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.9e-09  Score=81.63  Aligned_cols=98  Identities=24%  Similarity=0.307  Sum_probs=74.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ...|++++..+  .+|+++|+++++||.+|+.+...+   ..+.+-. .+++|..++.+.  ...++..|++.++|++.+
T Consensus         8 ~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~---~~l~~~~-~~~~~~~vd~d~--~~~~~~~~~V~~~Pt~~~   79 (105)
T d2ifqa1           8 KTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKY-SNVIFLEVDVDD--CQDVASECEVKCMPTFQF   79 (105)
T ss_dssp             HHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCBSSEEEE
T ss_pred             HHHHHHHHHhC--CCCEEEEEEEcCCccchhhhhhhh---hhhcccc-ccceeeeccccc--CHhHHHHcCceEEEEEEE
Confidence            34577777654  479999999999999999997543   2333333 357788776664  567899999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +.  .|+.+..+.|. +++++.+.|.++|
T Consensus        80 ~~--~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          80 FK--KGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EE--TTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EE--CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            95  69999999995 7777777666653

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.85  E-value=2.7e-09  Score=83.70  Aligned_cols=99  Identities=13%  Similarity=0.211  Sum_probs=78.3

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      -...+|++.++.++..+|++||+++.+||.+|+.|..      .+.++.+  .++.|+.++.+  +...++..|++..+|
T Consensus        10 ~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~I~~~P   81 (113)
T d1ti3a_          10 HTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAP------IFAELAKKFPNVTFLKVDVD--ELKAVAEEWNVEAMP   81 (113)
T ss_dssp             CSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHH------HHHHHHHHCSSEEEEEEETT--TCHHHHHHHHCSSTT
T ss_pred             eCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhh------hhhhhhccCCCceEEeeeee--ccccccccCeecccc
Confidence            3456789999999999999999999999999999965      3344443  35778777665  456789999999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      ++.++.  .|+.+..+.|. +++++.+.|.+.
T Consensus        82 t~~~~k--~G~~v~~~~G~-~~~~l~~~i~k~  110 (113)
T d1ti3a_          82 TFIFLK--DGKLVDKTVGA-DKDGLPTLVAKH  110 (113)
T ss_dssp             EEEEEE--TTEEEEEEECC-CTTHHHHHHHHH
T ss_pred             eEEEEE--CCEEEEEEcCC-CHHHHHHHHHHH
Confidence            999996  69999999994 676655555443

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.80  E-value=8.5e-09  Score=81.03  Aligned_cols=96  Identities=13%  Similarity=0.130  Sum_probs=75.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      ..+|.+++..+  .+|+++|+++.+||.+|+.|..      .+.++.+  .+.+|+.++.+. +...+++.|++..+|++
T Consensus        13 ~d~f~~~l~~~--~~k~vvv~f~a~wC~~C~~~~p------~~~~l~~~~~~v~~~~vd~~~-~~~~l~~~~~V~~~Pt~   83 (112)
T d1f9ma_          13 KDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAP------KYEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF   83 (112)
T ss_dssp             TTTHHHHHHTC--TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSEE
T ss_pred             HHHHHHHHHHc--CCCEEEEEEEcCCCcchHHHHH------HHhhhccccccceeecccccc-cchhhHhheeeccCCEE
Confidence            45677776543  4589999999999999999964      4444444  357888887653 45678999999999999


Q ss_pred             EEEeCCCCeeEEEecCCCChHHHHHHHHHH
Q 021440          200 LVIDPITGQKICSWCGMINPQPLGEMLLPF  229 (312)
Q Consensus       200 ~IIdprTGe~v~~~~G~~~~~~fl~~L~~f  229 (312)
                      +++-  .|+.+..+.|. +++.+++.|+..
T Consensus        84 ~~~k--~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          84 KILK--ENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEE--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEE--CCEEEEEEeCC-CHHHHHHHHHHc
Confidence            9994  69999999996 778888877754

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=1.9e-08  Score=78.29  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=73.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      ..+|+..+..+  .+|++||+++.+||.+|+.+...+   ..+.+-.++++.++.++.+.  ...+++.|++..+|++.+
T Consensus        13 ~~~~~~~l~~~--~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~i~~d~--~~~l~~~~~V~~~Pt~~~   85 (111)
T d1xwaa_          13 KADLDGQLTKA--SGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVF   85 (111)
T ss_dssp             HHHHHHHHHHH--TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHHhc--CCCEEEEEEECCcccCccccchhH---HHHhhhcccceEEEEEEeec--CcchhhcCCCccccEEEE
Confidence            34567766554  689999999999999999997655   44555556677888877664  456889999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          202 IDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      +.  .|+.+..+.|. ++++    |.++|++
T Consensus        86 ~~--~G~~v~~~~G~-~~~~----l~~~I~~  109 (111)
T d1xwaa_          86 LK--NGVKVEEFAGA-NAKR----LEDVIKA  109 (111)
T ss_dssp             EE--TTEEEEEEESC-CHHH----HHHHHHH
T ss_pred             EE--CCEEEEEEeCC-CHHH----HHHHHHh
Confidence            95  69999999996 4554    4555544

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.71  E-value=5.5e-08  Score=76.40  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             HHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          131 AALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       131 ~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      ...+.+++++|+++.+||.+|+.|..      .+.++.+  .+..|+.++.+.  ...++..|++..+|+++++.  .|+
T Consensus        21 ~~~~~~~~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~~~~--~G~   90 (113)
T d1r26a_          21 NIMSEDILTVAWFTAVWCGPCKTIER------PMEKIAYEFPTVKFAKVDADN--NSEIVSKCRVLQLPTFIIAR--SGK   90 (113)
T ss_dssp             HHHHSSSCEEEEEECTTCHHHHHTHH------HHHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTE
T ss_pred             HHHcCCCeEEEEEECCCCccchhhce------ecccccccccccccccccccc--chhhHHHccccCCCEEEEEE--CCE
Confidence            34478999999999999999999853      3334333  257788887654  45789999999999999986  599


Q ss_pred             eEEEecCCCChHHHHHHHHHHHhh
Q 021440          209 KICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       209 ~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      .+..+.|. +++.+.+.|.+++.+
T Consensus        91 ~v~~~~G~-~~~~l~~~l~~~ike  113 (113)
T d1r26a_          91 MLGHVIGA-NPGMLRQKLRDIIKD  113 (113)
T ss_dssp             EEEEEESS-CHHHHHHHHHHHHHC
T ss_pred             EEEEEeCC-CHHHHHHHHHHHhcC
Confidence            99999995 689999999998863

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=4.7e-08  Score=78.25  Aligned_cols=93  Identities=17%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh---------------------HHHHHHhcC
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE---------------------GWKVCSFYN  192 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E---------------------G~~~~~~Y~  192 (312)
                      .++|++||||.++||.+|+.-.      |.+.++-+.++.+..++.+...                     ...+...|+
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~------p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   91 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG   91 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHT
T ss_pred             cCCCEEEEEEEcCcCCCcCccc------cchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcc
Confidence            4799999999999999998632      3444444444444444333211                     113567788


Q ss_pred             CCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          193 MDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +..+|+++|||+ .|+.+.++.|.++++++.+.|.+.|++.
T Consensus        92 v~~~P~~~liD~-~G~i~~~~~G~~~~~~l~~~i~~ll~kl  131 (136)
T d1z5ye1          92 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEKY  131 (136)
T ss_dssp             CCSBSEEEEECT-TSCEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             cCCcceEEEEcC-CCEEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence            999999999996 6999999999999999999888888764

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.68  E-value=3.8e-08  Score=75.60  Aligned_cols=95  Identities=14%  Similarity=0.102  Sum_probs=71.3

Q ss_pred             HHHHHHHHHcCCeE-EEEeecCCCcccchhhcccCCCHHHHHHhh-------ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          126 EKAKDAALAQDKWL-LVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-------VNFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       126 ~~A~~~Ak~~~KwL-LVniq~~~~f~c~~lnRDvw~~~~V~~~i~-------~nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      ++.++.+++.+|-+ +++++++||.+|+.+.+.      +.++..       .++.+..+  |..+...+++.|++.++|
T Consensus         4 ~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~------~~~la~~~~~~~~~~v~~~~i--d~~~~~~l~~~~~V~~vP   75 (107)
T d1a8la2           4 DETKQAIRNIDQDVRILVFVTPTCPYCPLAVRM------AHKFAIENTKAGKGKILGDMV--EAIEYPEWADQYNVMAVP   75 (107)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHH------HHHHHHHHHHTTCCCEEEEEE--EGGGCHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhcCCCeEEEEEEcCccccchhhChh------HHhhhhhhhhccCCcEEEEEe--ccccccccccccccccce
Confidence            45566667766654 557999999999998543      333322       23556655  445677899999999999


Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +++|..  .|+.+.++.|..+.+.|++.|.+.|
T Consensus        76 Ti~i~~--~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          76 KIVIQV--NGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             EEEEEE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEe--CCeEEEEEECCCCHHHHHHHHHHhh
Confidence            986543  6999999999999999999998876

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.61  E-value=9.3e-08  Score=73.26  Aligned_cols=92  Identities=16%  Similarity=0.197  Sum_probs=69.0

Q ss_pred             ccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          123 GSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       123 gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ..|++++    +++|.++|+++++||.+|+.+...+      .++.++  +.+|..++.+  +...++..|++..+|+++
T Consensus         9 ~~f~~~i----~~~~~vvv~F~a~wC~~C~~~~~~~------~~l~~~~~~~~~~~vd~d--~~~~~~~~~~V~~~Pt~i   76 (103)
T d1syra_           9 AEFDSII----SQNELVIVDFFAEWCGPCKRIAPFY------EECSKTYTKMVFIKVDVD--EVSEVTEKENITSMPTFK   76 (103)
T ss_dssp             HHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH------HHHHHHCTTSEEEEEETT--TTHHHHHHTTCCSSSEEE
T ss_pred             HHHHHHH----hCCCcEEEEEeCCcccCcccccccc------hhhhhcccceEEEeeccc--cCcceeeeeeeecceEEE
Confidence            3455555    4689999999999999999997543      333332  5667766655  445789999999999999


Q ss_pred             EEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          201 VIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       201 IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      ++.  .|+.+..+.|. +++    .|.++|+++
T Consensus        77 ~~k--~G~~v~~~~G~-~~~----~l~~~i~k~  102 (103)
T d1syra_          77 VYK--NGSSVDTLLGA-NDS----ALKQLIEKY  102 (103)
T ss_dssp             EEE--TTEEEEEEESC-CHH----HHHHHHHTT
T ss_pred             EEE--CCEEEEEEeCc-CHH----HHHHHHHhh
Confidence            995  69999999995 444    467777665

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.52  E-value=1.5e-07  Score=75.92  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=68.1

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc-cEEEEEeccCC--hh-------------------HHHHHH
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV-NFIFWQEYDDT--SE-------------------GWKVCS  189 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~-nFIfwq~~~ds--~E-------------------G~~~~~  189 (312)
                      +.-++|++|||+.++||..|+....      .+.++.+. ++.++.+..+.  .+                   ..++..
T Consensus        27 ~~~kgK~vll~fwa~wC~~C~~~~p------~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  100 (144)
T d1knga_          27 AAFKGKVSLVNVWASWCVPCHDEAP------LLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASI  100 (144)
T ss_dssp             GGGTTSCEEEEEECTTCHHHHHHHH------HHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHH
T ss_pred             HHhCCCEEEEEeeccccccccccCc------hhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhh
Confidence            4446799999999999999987643      34444432 23333333221  11                   224667


Q ss_pred             hcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          190 FYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       190 ~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      .|.+..+|+++|||+ .|+.+.++.|.++.+++.+.|.+.|++
T Consensus       101 ~~~v~~~P~~~liD~-~G~i~~~~~G~~~~~~l~~~i~~~l~k  142 (144)
T d1knga_         101 EWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQMEK  142 (144)
T ss_dssp             HTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             hcCccccceEEEEcC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            888899999999997 599999999999999988888887764

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.2e-07  Score=75.23  Aligned_cols=101  Identities=11%  Similarity=0.084  Sum_probs=81.4

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc----cEEEEEeccCChhHHHHHHhcCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYDDTSEGWKVCSFYNMDSI  196 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~----nFIfwq~~~ds~EG~~~~~~Y~~~~~  196 (312)
                      -.-+|++.+.  +..++.+||+++.+||.+|..+.      +.+.++.++    .|.+..+  |..+...+++.|++..+
T Consensus        23 ~~~~~d~~~~--~~~~~vVll~f~a~wCp~C~~~~------pvl~ela~~~~~~~~~~a~V--d~d~~~~la~~~~V~~~   92 (132)
T d2hfda1          23 SESRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNP------VMIGELLREFPDYTWQVAIA--DLEQSEAIGDRFGVFRF   92 (132)
T ss_dssp             CHHHHHHHHH--HCSEEEEEECSCCSCCSSSSCCT------HHHHHHHTTCTTSCEEEEEE--CHHHHHHHHHHHTCCSC
T ss_pred             ccccHHHHHH--hCCCcEEEEEeeCCCChhHHHHH------HHHHHHHHHccCCcceeEEE--EecCCHHHHHhhccCcc
Confidence            4567777654  45568999999999999999984      556666554    3555555  55566789999999999


Q ss_pred             CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          197 PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       197 P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      |++.++.  .|+.+..+.|..+.+++++.|..+++.-
T Consensus        93 PT~~~~~--~G~~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          93 PATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             CEEEEEE--TTEEEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             eeEEEEE--cCcEeeeecCCCCHHHHHHHHHHHhCcc
Confidence            9999995  6999999999999999999999988653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.43  E-value=6.3e-07  Score=69.86  Aligned_cols=95  Identities=12%  Similarity=0.084  Sum_probs=67.9

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--ChhHHHHHHhcCCCCCCeEEE
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--TSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--s~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      +++ .+..+...++.++|++..+||.+|+.|...+   ..+.+-.+....+..++..  ..+...++..|++..+|++++
T Consensus        15 t~~-~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~   90 (115)
T d1zmaa1          15 TVV-RAQEALDKKETATFFIGRKTCPYCRKFAGTL---SGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVH   90 (115)
T ss_dssp             CHH-HHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEE
T ss_pred             CHH-HHHHHHhcCCCEEEEEcCCCCccHHHHHHHH---HHHHHHhhhhhhhheeecccccccccccccccccccccEEEE
Confidence            443 4456667899999999999999999996433   3333333333444433321  234457899999999999999


Q ss_pred             EeCCCCeeEEEecCCCChHHHHH
Q 021440          202 IDPITGQKICSWCGMINPQPLGE  224 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~~~~fl~  224 (312)
                      +.  .|+.+.++.|..+.+++.+
T Consensus        91 ~~--~gk~~~~~~G~~~~~el~~  111 (115)
T d1zmaa1          91 IT--DGQINVRCDSSMSAQEIKD  111 (115)
T ss_dssp             EE--TTEEEEECCTTCCHHHHHH
T ss_pred             EE--CCEEEEEEcCCCCHHHHHH
Confidence            97  4898888999998877544

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.41  E-value=1.2e-07  Score=69.82  Aligned_cols=84  Identities=13%  Similarity=0.045  Sum_probs=63.1

Q ss_pred             CCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecC
Q 021440          136 DKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       136 ~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G  215 (312)
                      .|..+++++++||.+|+.+...+   +.+.+..+....+..++.+  +...+++.|++.++|++.| +. .|+    +.|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~d--~~~~la~~~~V~~~Pt~~i-~~-~g~----~~G   70 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVM--ENPQKAMEYGIMAVPTIVI-NG-DVE----FIG   70 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESS--SSCCTTTSTTTCCSSEEEE-TT-EEE----CCS
T ss_pred             CceEEEEEECCCCcChHhhhhhc---ccccccccccccccccccc--ccccccccCCceEeeEEEE-EC-CcE----EEC
Confidence            47789999999999999997544   4455555556677766554  5567899999999999864 42 354    569


Q ss_pred             CCChHHHHHHHHHHH
Q 021440          216 MINPQPLGEMLLPFM  230 (312)
Q Consensus       216 ~~~~~~fl~~L~~fl  230 (312)
                      ..+.+++++.|.+.|
T Consensus        71 ~~~~~~l~~~i~~~L   85 (85)
T d1fo5a_          71 APTKEALVEAIKKRL   85 (85)
T ss_dssp             SSSSHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHhcC
Confidence            889999888877654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=7.3e-07  Score=69.90  Aligned_cols=97  Identities=9%  Similarity=0.103  Sum_probs=72.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCChhHHHHHHhcCCCCCCeE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTSEGWKVCSFYNMDSIPAV  199 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i  199 (312)
                      -..+|++.+    +++|.+||+++++||..|+.|...+   +.+.+.++ .++.|..+|.+.  ...++..|++..||+|
T Consensus        16 t~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~~~---~~la~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pti   86 (119)
T d2b5ea4          16 ATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEY---VKAAETLVEKNITLAQIDCTE--NQDLCMEHNIPGFPSL   86 (119)
T ss_dssp             CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             CHHHHHHHH----hcCCeEEEEEECCccCcccccchhh---hhhhhhhcccceeeeeeeccc--hHHHHHHhccccCCeE
Confidence            456687765    4578999999999999999997644   44444444 457777887764  5689999999999999


Q ss_pred             EEEeCCCCeeEE--EecCCCChHHHHHHHHH
Q 021440          200 LVIDPITGQKIC--SWCGMINPQPLGEMLLP  228 (312)
Q Consensus       200 ~IIdprTGe~v~--~~~G~~~~~~fl~~L~~  228 (312)
                      .++-  .|+...  .+.|..+.+++++-|.+
T Consensus        87 ~~f~--~g~~~~~~~y~g~~~~~~l~~fi~k  115 (119)
T d2b5ea4          87 KIFK--NSDVNNSIDYEGPRTAEAIVQFMIK  115 (119)
T ss_dssp             EEEE--TTCTTCEEECCSCCSHHHHHHHHHH
T ss_pred             EEEE--CCEEeeeEEecCCCCHHHHHHHHHH
Confidence            9983  365443  36788888887766554

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.4e-07  Score=73.34  Aligned_cols=103  Identities=6%  Similarity=0.022  Sum_probs=76.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEE
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVL  200 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~  200 (312)
                      ....|++|+..  .++|.++|+++.+||.+|+.|..-+   +.+.+-+.+.++|+.+|++.  ...+++.|++.++|++.
T Consensus         9 s~~~~dq~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~VDvd~--~~~la~~~~I~~~PT~~   81 (137)
T d1qgva_           9 NGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITE--VPDFNKMYELYDPCTVM   81 (137)
T ss_dssp             SHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTT--CCTTTTSSCSCSSCEEE
T ss_pred             CHHHHHHHHHh--CCCCEEEEEEECCCCccchhcChHH---HHHHHHhhccceEEEeeccc--cchhhhhcCeeeEEEEE
Confidence            34567887764  4689999999999999999997544   45555566678999887764  34789999999999999


Q ss_pred             EEeCCCCeeEEEec---------CCC-ChHHHHHHHHHHHhh
Q 021440          201 VIDPITGQKICSWC---------GMI-NPQPLGEMLLPFMDR  232 (312)
Q Consensus       201 IIdprTGe~v~~~~---------G~~-~~~~fl~~L~~fl~~  232 (312)
                      +..  .|+.+..-.         |.+ +.++|++.+......
T Consensus        82 ~f~--~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~  121 (137)
T d1qgva_          82 FFF--RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  121 (137)
T ss_dssp             EEE--TTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             EEe--CCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHH
Confidence            996  488775432         332 667777777665544

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.37  E-value=3.3e-07  Score=72.74  Aligned_cols=100  Identities=11%  Similarity=0.117  Sum_probs=67.7

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc----cEEEEEeccCChhHHHHHHhcCCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYDDTSEGWKVCSFYNMDS  195 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~----nFIfwq~~~ds~EG~~~~~~Y~~~~  195 (312)
                      +...+|++.+..  ...+.+||+++.+||.+|+.+.      +.+-++.++    +|.+..++  ......+++.|++..
T Consensus        16 v~~~~ld~~~~~--~~~~~vll~f~a~wCp~C~~~~------pvl~eL~~~~~~~~~~~~~Vd--~d~~~~l~~~~~V~~   85 (119)
T d2es7a1          16 VEASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVAD--LEQSEAIGDRFNVRR   85 (119)
T ss_dssp             CCCC----------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEEC--HHHHHHHHHTTTCCS
T ss_pred             ecccCHHHHHHh--CCCcEEEEeecCCCCccHHHHH------HHHHHHHHhcCCCceEEEEEE--CCCCHHHHHhcCcCc
Confidence            356678877754  4668999999999999999995      445555553    47677664  456678999999999


Q ss_pred             CCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          196 IPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       196 ~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                      +|++.++.  .|+.+.++.|..+.+++++.|...|+
T Consensus        86 ~Pt~~~~~--~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          86 FPATLVFT--DGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             SSEEEEES--CC----CEESCCCHHHHHHHHHHHHC
T ss_pred             ceEEEEEE--cCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            99999995  59999999999999999999998875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.5e-07  Score=73.55  Aligned_cols=96  Identities=13%  Similarity=0.116  Sum_probs=66.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh---ccEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS---VNFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      -..+|+++++    .+|.+||+++++||..|+.|...+   ..+.+.++   .++++..++.+  +...++..|++..||
T Consensus        13 ~~~~f~~~l~----~~k~vlV~Fya~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~P   83 (120)
T d1meka_          13 RKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDAT--EESDLAQQYGVRGYP   83 (120)
T ss_dssp             CTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETT--TCCSSHHHHTCCSSS
T ss_pred             CHHHHHHHHh----cCCcEEEEEECCCcCCccccchhh---hhhcccccccccceeeeccccc--cchhHHHHhCCccCC
Confidence            3567877763    579999999999999999985432   22333332   23667777655  445788899999999


Q ss_pred             eEEEEeCCCCee--EEEecCCCChHHHHHHHH
Q 021440          198 AVLVIDPITGQK--ICSWCGMINPQPLGEMLL  227 (312)
Q Consensus       198 ~i~IIdprTGe~--v~~~~G~~~~~~fl~~L~  227 (312)
                      +|.++..  |+.  ...+.|..+.++|++-|.
T Consensus        84 t~~~~~~--G~~~~~~~~~g~~~~~~l~~fi~  113 (120)
T d1meka_          84 TIKFFRN--GDTASPKEYTAGREADDIVNWLK  113 (120)
T ss_dssp             EEEEEES--SCSSSCEECCCCSSHHHHHHHHH
T ss_pred             eEEEEEC--CeEeeeEEecCCCCHHHHHHHHH
Confidence            9998864  544  345788888777554443

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.2e-06  Score=69.16  Aligned_cols=74  Identities=12%  Similarity=0.051  Sum_probs=57.4

Q ss_pred             HcCCeEEEEeecC-------CCcccchhhcccCCCHHHHHHh---hccEEEEEeccCChh-----HHHHHHhcCCCCCCe
Q 021440          134 AQDKWLLVNLQST-------KEFSSLMLNRDTWGNEAVSQII---SVNFIFWQEYDDTSE-----GWKVCSFYNMDSIPA  198 (312)
Q Consensus       134 ~~~KwLLVniq~~-------~~f~c~~lnRDvw~~~~V~~~i---~~nFIfwq~~~ds~E-----G~~~~~~Y~~~~~P~  198 (312)
                      .++|.|+|+++++       ||.+|+.+..      .+.++.   +.++.|+.++++...     ...+++.|++..+|+
T Consensus        19 ~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P------~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT   92 (119)
T d1woua_          19 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEP------VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPT   92 (119)
T ss_dssp             TTTSEEEEEEECCBCTTCCBSCHHHHHHHH------HHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSE
T ss_pred             cCCCEEEEEEEecCCCCCCCCChhHHHHHH------HHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEEEE
Confidence            4679999999985       9999999964      445554   557999999987632     335888999999999


Q ss_pred             EEEEeCCCCeeEEEecC
Q 021440          199 VLVIDPITGQKICSWCG  215 (312)
Q Consensus       199 i~IIdprTGe~v~~~~G  215 (312)
                      +++++  .|+++....+
T Consensus        93 ~i~~~--~g~~l~~~~~  107 (119)
T d1woua_          93 LLKYG--TPQKLVESEC  107 (119)
T ss_dssp             EEETT--SSCEEEGGGG
T ss_pred             EEEEE--CCeEEeeeec
Confidence            99998  4777654443

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.24  E-value=7.6e-07  Score=71.20  Aligned_cols=92  Identities=15%  Similarity=0.078  Sum_probs=62.1

Q ss_pred             HcCCeEEEEeecCCCcccchhh----c---------------------ccCCCHHHHHHhhc-cEEEEEeccCChhHHHH
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLN----R---------------------DTWGNEAVSQIISV-NFIFWQEYDDTSEGWKV  187 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~ln----R---------------------Dvw~~~~V~~~i~~-nFIfwq~~~ds~EG~~~  187 (312)
                      .++|.++|++.++||..|+..-    +                     .-+.+..+.++..+ ++..|.+..|  ....+
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D--~~~~~   98 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTD--NGGTI   98 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEEC--TTCHH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccc--cchHH
Confidence            4689999999999999998521    1                     11223333333222 2222222222  12357


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      +..|++..+|+++|||+ .|+.+.+..|.++.+++.+.|++
T Consensus        99 ~~~~~v~~~P~~~liD~-~G~i~~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1          99 AQSLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRD  138 (143)
T ss_dssp             HHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHC
T ss_pred             HHHcCCCccCEEEEECC-CCEEEEEEECCCCHHHHHHHHHH
Confidence            88999999999999996 69998889999998887777764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=3.7e-06  Score=66.73  Aligned_cols=87  Identities=13%  Similarity=0.129  Sum_probs=61.6

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC-h-h------------------HHHHHHhcCCC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT-S-E------------------GWKVCSFYNMD  194 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds-~-E------------------G~~~~~~Y~~~  194 (312)
                      ++|++||++.++||..|+.....+  +....++-+.++.++.++.+. . +                  ...++..|++.
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l--~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  101 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYM--ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS  101 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHH--HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEEeeccccceeeccccc--ccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcc
Confidence            689999999999999998775543  122333444556666655432 2 1                  12456777788


Q ss_pred             CCCeEEEEeCCCCeeEEEecCCCChHHHHH
Q 021440          195 SIPAVLVIDPITGQKICSWCGMINPQPLGE  224 (312)
Q Consensus       195 ~~P~i~IIdprTGe~v~~~~G~~~~~~fl~  224 (312)
                      .+|++.|||+ .|+.+..+.|.++.+.+-+
T Consensus       102 ~~P~~~liD~-~G~i~~~~~G~~~~~~~~~  130 (137)
T d1st9a_         102 PLPTTFLINP-EGKVVKVVTGTMTESMIHD  130 (137)
T ss_dssp             SSCEEEEECT-TSEEEEEEESCCCHHHHHH
T ss_pred             ccceEEEECC-CCEEEEEEECCCCHHHHHH
Confidence            9999999997 6999999999988765433

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.06  E-value=8.9e-06  Score=63.88  Aligned_cols=103  Identities=13%  Similarity=0.070  Sum_probs=72.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchh--hcccC-CCHHHHHHhhc-cEEEEEeccCChhHHHHHHhcCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLML--NRDTW-GNEAVSQIISV-NFIFWQEYDDTSEGWKVCSFYNMDSI  196 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~l--nRDvw-~~~~V~~~i~~-nFIfwq~~~ds~EG~~~~~~Y~~~~~  196 (312)
                      -..+|++++.    +++++||.++.+||..|..+  +.... .-+.+.+.++. .+.|..++.+.  ...++..|++..|
T Consensus        17 ~~~nf~~~l~----~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~--~~~l~~~~~I~~y   90 (124)
T d1a8ya1          17 NAKNYKNVFK----KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGLTEE   90 (124)
T ss_dssp             CTTTHHHHHH----HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT--SHHHHHTTTCCST
T ss_pred             CHHHHHHHHH----hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec--ccchhhccccccC
Confidence            3556888773    56789999999999854321  11110 11233334433 47888886544  4578999999999


Q ss_pred             CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          197 PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       197 P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      |+|.++..  |+.+ .+.|..+.+.|++-|.+.|+.
T Consensus        91 PTi~~f~~--g~~~-~y~G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          91 DSIYVFKE--DEVI-EYDGEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             TCEEEEES--SSEE-ECCSCCSHHHHHHHHHHHHSC
T ss_pred             CcEEEecc--CccE-EeeCCCCHHHHHHHHHHhcCC
Confidence            99999973  6654 689999999999999888753

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.04  E-value=4.9e-06  Score=61.29  Aligned_cols=81  Identities=12%  Similarity=0.045  Sum_probs=61.5

Q ss_pred             EEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCCh
Q 021440          140 LVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINP  219 (312)
Q Consensus       140 LVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~  219 (312)
                      ++-++++||.+|+.+...+   +.+.+-.+.++.|..++.  .++..++..|++..+|++.+ +   |+.  ++.|..++
T Consensus         5 v~~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~--d~~~~l~~~~~V~~~Pt~~~-~---~~~--~~~G~~~~   73 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDI--MVDREKAIEYGLMAVPAIAI-N---GVV--RFVGAPSR   73 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECT--TTCGGGGGGTCSSCSSEEEE-T---TTE--EEECSSCC
T ss_pred             EEEEECCCCcchHHHHHHH---hhhccccccccccccccc--ccchhhHHhcCceEeCEEEE-C---CcE--EEEcCCCH
Confidence            3448999999999997654   455555566788887755  46778999999999999754 4   332  36799999


Q ss_pred             HHHHHHHHHHHh
Q 021440          220 QPLGEMLLPFMD  231 (312)
Q Consensus       220 ~~fl~~L~~fl~  231 (312)
                      +.+.+.|.+.|+
T Consensus        74 ~~l~~~i~~~l~   85 (85)
T d1nhoa_          74 EELFEAINDEME   85 (85)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhC
Confidence            999988887653

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.00  E-value=1.4e-05  Score=66.07  Aligned_cols=93  Identities=18%  Similarity=0.122  Sum_probs=59.3

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--Ch------------------------hHHHH
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--TS------------------------EGWKV  187 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--s~------------------------EG~~~  187 (312)
                      -++|++||++..+||..|+.....+  +.-..++-..++.+..+..+  ++                        -...+
T Consensus        54 ~kGK~vll~F~a~wC~~C~~~~~~l--~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  131 (176)
T d1jfua_          54 FRGKTLLVNLWATWCVPCRKEMPAL--DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDL  131 (176)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHH
T ss_pred             hCCCEEEEEeccCcccchHHHHHhh--hhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHH
Confidence            3679999999999999997765443  11122233333322223222  22                        22234


Q ss_pred             HHhcCCCCCCeEEEEeCCCCeeEEEecCCC--ChHHHHHHHHHH
Q 021440          188 CSFYNMDSIPAVLVIDPITGQKICSWCGMI--NPQPLGEMLLPF  229 (312)
Q Consensus       188 ~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~--~~~~fl~~L~~f  229 (312)
                      ..+|++..+|++.|||. .|+.++++.|.+  +.+++++.|+..
T Consensus       132 ~~~~~v~~~P~~~lID~-~G~I~~~~~G~~~~~~~e~~~~l~al  174 (176)
T d1jfua_         132 KAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAA  174 (176)
T ss_dssp             HTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred             hhhccCCCCCeEEEEcC-CCEEEEEEECCCCCChHHHHHHHHHh
Confidence            45666677999999996 699999999975  456777777654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=2.2e-05  Score=62.73  Aligned_cols=95  Identities=14%  Similarity=0.029  Sum_probs=61.5

Q ss_pred             HHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCC------h-------------------hH
Q 021440          130 DAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDT------S-------------------EG  184 (312)
Q Consensus       130 ~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds------~-------------------EG  184 (312)
                      ..+...+|+++|++.++||.+|+..-..+   ..+.+-.++.+.+..++.+.      .                   ..
T Consensus        23 ~~~~~~~k~vvl~f~a~~C~~C~~~~p~l---~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~   99 (143)
T d2b5xa1          23 REQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSD   99 (143)
T ss_dssp             HHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSS
T ss_pred             cHHHhCCCEEEEEEEcCCCcchhhhhhhh---hhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCc
Confidence            34556789999999999999998653211   11222222332232222211      1                   11


Q ss_pred             HHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          185 WKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       185 ~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      ..+.+.|.+..+|++.|||+ .|+.+..+.|..+.+.+-+.|.+
T Consensus       100 ~~~~~~~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         100 HALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CHHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHH
T ss_pred             cchHHHcCCCcCCEEEEECC-CCEEEEEEECCCCHHHHHHHHHh
Confidence            13566788889999999997 69999899998888877766654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=2.7e-05  Score=61.20  Aligned_cols=87  Identities=15%  Similarity=0.104  Sum_probs=57.8

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc----cEEEEEeccCCh-------------------hHHHHHHh
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV----NFIFWQEYDDTS-------------------EGWKVCSF  190 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~----nFIfwq~~~ds~-------------------EG~~~~~~  190 (312)
                      -++|++||++.++||.+|+...      +.+.++.++    .+|+.....+..                   ....+...
T Consensus        23 ~~Gk~vll~fwa~wC~~C~~~~------p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~   96 (134)
T d1zzoa1          23 LLGKPAVLWFWAPWCPTCQGEA------PVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN   96 (134)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred             hCCCEEEEEecccccCcccccc------hhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHh
Confidence            3589999999999999997652      344444432    122222111111                   12256677


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          191 YNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                      |.+..+|++.|||+ .|+. ..+.|..+.+++.+.|.+
T Consensus        97 ~~v~~~P~~~iiD~-~G~i-~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1          97 FGVTQQPAYAFVDP-HGNV-DVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             TTCCSSSEEEEECT-TCCE-EEEESCCCHHHHHHHHHH
T ss_pred             cCCCccCeEEEECC-CCeE-EEEECCCCHHHHHHHHHh
Confidence            88889999999997 5874 446788899888777765

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=97.89  E-value=1.5e-05  Score=64.01  Aligned_cols=77  Identities=17%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHh-hccEEEEEeccCChh----------------------HHHHHHh
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQII-SVNFIFWQEYDDTSE----------------------GWKVCSF  190 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i-~~nFIfwq~~~ds~E----------------------G~~~~~~  190 (312)
                      =++|.|+|++.++||.+|+..-..+  .+-..++- +.+|.++.++.|...                      ...+.+.
T Consensus        26 ~~GK~vvl~FwatwC~~C~~~~p~l--~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  103 (144)
T d1o73a_          26 LVGKTVFLYFSASWCPPCRGFTPVL--AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKT  103 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHH--HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             hCCCEEEEEeChhhCccchhhhHHH--HHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHH
Confidence            3679999999999999998765432  11112232 235777766655321                      1246678


Q ss_pred             cCCCCCCeEEEEeCCCCeeEEE
Q 021440          191 YNMDSIPAVLVIDPITGQKICS  212 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~~  212 (312)
                      |.+..+|++.|||+.+|+.+..
T Consensus       104 y~v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         104 FGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HTCCSSSEEEEEETTTCCEEES
T ss_pred             cCCCcCCEEEEEECCCCEEEee
Confidence            9999999999999876876654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=2.1e-05  Score=62.25  Aligned_cols=87  Identities=13%  Similarity=0.022  Sum_probs=57.7

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCC--hh------------------HHHHHHhcC
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDT--SE------------------GWKVCSFYN  192 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds--~E------------------G~~~~~~Y~  192 (312)
                      ++|++||++..+||..|+..-..      +.++.+  .+..+..++.+.  .+                  ...++..|.
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~------l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~   96 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPS------LSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN   96 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT
T ss_pred             CCCEEEEEEeecccCCceecchh------HHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcC
Confidence            58999999999999999874322      222222  123333333221  11                  124667788


Q ss_pred             CCCCCeEEEEeCCCCeeEEE--ecCCCChHHHHHHHHH
Q 021440          193 MDSIPAVLVIDPITGQKICS--WCGMINPQPLGEMLLP  228 (312)
Q Consensus       193 ~~~~P~i~IIdprTGe~v~~--~~G~~~~~~fl~~L~~  228 (312)
                      +..+|++.|||+ .|+...+  ..|..+.+++.+.|..
T Consensus        97 v~~~P~~~lid~-~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          97 VPWQPAFVFYRA-DGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             CCSSSEEEEECT-TSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             CCcCCEEEEEeC-CCeEEEEeccCCCCCHHHHHHHHHc
Confidence            899999999997 5875443  4677899999888764

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.87  E-value=1.9e-06  Score=66.48  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             HHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc-EE-EEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCee-
Q 021440          133 LAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN-FI-FWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQK-  209 (312)
Q Consensus       133 k~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n-FI-fwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~-  209 (312)
                      .+.+|.+||+++.+||..|+.|....   +.+.+.+..+ ++ +..+  +..+....+..|++..||+|.++..  |+. 
T Consensus        17 ~~~~k~vlV~fya~wC~~Ck~~~p~~---~~la~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Pti~~f~~--g~~~   89 (116)
T d2djja1          17 LDDTKDVLIEFYAPWCGHCKALAPKY---EELGALYAKSEFKDRVVI--AKVDATANDVPDEIQGFPTIKLYPA--GAKG   89 (116)
T ss_dssp             SCTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHTTSSCTTSSEE--EEEETTTSCCSSCCSSSSEEEEECS--SCTT
T ss_pred             hcCCCCEEEEEEecccccccccchHH---HHHHHHHhcccccceeEE--EecccchhhhcccccCCCEEEEEEC--CccC
Confidence            35689999999999999999997633   4455544432 21 1111  1122233445789999999998853  443 


Q ss_pred             -EEEecCCCChHHHHHHHHHHHhhC
Q 021440          210 -ICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       210 -v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                       ...+.|..+.++|+    +||+++
T Consensus        90 ~~~~~~g~~~~~~l~----~fi~~~  110 (116)
T d2djja1          90 QPVTYSGSRTVEDLI----KFIAEN  110 (116)
T ss_dssp             SCCCCCCCSCHHHHH----HHHHHT
T ss_pred             ceEEecCCCCHHHHH----HHHHHc
Confidence             23467877777654    566554

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.86  E-value=3.5e-05  Score=58.03  Aligned_cols=81  Identities=9%  Similarity=0.013  Sum_probs=59.2

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEec
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWC  214 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~  214 (312)
                      ++.+.++.++++||.+|+.+-.-+   ..+.. .+.+..|..++.+  +...++..|++.++|++. |   .|+.+  +.
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~---~~~a~-~~~~i~~~~vd~~--~~~~l~~~~~I~~vPt~~-~---ng~~~--~~   81 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQAL---NLMAV-LNPRIKHTAIDGG--TFQNEITERNVMGVPAVF-V---NGKEF--GQ   81 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHH---HHHHH-HCTTEEEEEEETT--TCHHHHHHTTCCSSSEEE-E---TTEEE--EE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHH---HHHHH-hCCceEEEEEecc--cchHHHhhcccccccEEE-E---CCEEE--Ee
Confidence            456888889999999999986533   12222 2456777776554  556899999999999984 4   47765  56


Q ss_pred             CCCChHHHHHHHH
Q 021440          215 GMINPQPLGEMLL  227 (312)
Q Consensus       215 G~~~~~~fl~~L~  227 (312)
                      |..+.+++++.|.
T Consensus        82 G~~~~~~l~~~le   94 (96)
T d1hyua4          82 GRMTLTEIVAKVD   94 (96)
T ss_dssp             SCCCHHHHHHHHC
T ss_pred             cCCCHHHHHHHHh
Confidence            9999888877663

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.85  E-value=3.1e-05  Score=60.61  Aligned_cols=97  Identities=9%  Similarity=0.119  Sum_probs=66.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHH--hhccEEEEEeccCC---hhHHHHHHhcCC--C
Q 021440          122 NGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQI--ISVNFIFWQEYDDT---SEGWKVCSFYNM--D  194 (312)
Q Consensus       122 ~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~--i~~nFIfwq~~~ds---~EG~~~~~~Y~~--~  194 (312)
                      ..+|++.+    .++|.+||+++.+||..|+.   ..|..-. ..+  ...++++..++.+.   .+...++..|++  .
T Consensus         9 ~~nFd~~v----~~~~~~lV~Fya~wC~~ck~---p~f~kla-~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           9 ELSFEKTV----ERFPYSVVKFDIASPYGEKH---EAFTAFS-KSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             TTTHHHHH----TTSSEEEEEEEESSCCSHHH---HHHHHHH-HHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             hHhHHHHH----hcCCcEEEEEECCCCCcccC---HHHHHHH-HHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            45677776    56799999999999999983   3332211 111  23468888888654   567899999988  5


Q ss_pred             CCCeEEEEeCCCCeeEE--EecCCCChHHHHHHHH
Q 021440          195 SIPAVLVIDPITGQKIC--SWCGMINPQPLGEMLL  227 (312)
Q Consensus       195 ~~P~i~IIdprTGe~v~--~~~G~~~~~~fl~~L~  227 (312)
                      +||+|.++..- +....  .+.|..+.+.|++-|.
T Consensus        81 ~~PTi~~f~~g-~~~~~~~~~~g~rt~~~l~~fv~  114 (122)
T d2c0ga2          81 NFPSIFLFKGN-ADEYVQLPSHVDVTLDNLKAFVS  114 (122)
T ss_dssp             SCCEEEEESSS-SSSEEECCTTSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeCC-cccccccccCCCCCHHHHHHHHH
Confidence            79999999863 22222  3567777766554444

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=6.5e-06  Score=65.87  Aligned_cols=95  Identities=11%  Similarity=0.066  Sum_probs=64.9

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-c--cEEEEEeccCChhHHHHHHhcCCCCCC
Q 021440          121 FNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-V--NFIFWQEYDDTSEGWKVCSFYNMDSIP  197 (312)
Q Consensus       121 ~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~--nFIfwq~~~ds~EG~~~~~~Y~~~~~P  197 (312)
                      -.-+|++.+.   ..+|.+||+++++||..|+.|.. +|.  .+.+.++ .  .+.+..++.+    ..++..|++.+||
T Consensus        18 ~~~nf~~~v~---~~~k~vlV~F~a~wC~~C~~~~p-~~~--~la~~~~~~~~~v~~~~~d~~----~~~~~~~~v~~~P   87 (140)
T d2b5ea1          18 VGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAP-TYQ--ELADTYANATSDVLIAKLDHT----ENDVRGVVIEGYP   87 (140)
T ss_dssp             CTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHH-HHH--HHHHHHHHHCSSCEEEEEEGG----GCCCSSCCCSSSS
T ss_pred             cCcCHHHHHh---cCCCCEEEEEEeccCcccchhHH-HHH--HHHHHHhccccceEEEeeecc----chhccccccccCC
Confidence            4557887764   45789999999999999999964 342  3433333 2  3445444432    2467899999999


Q ss_pred             eEEEEeCCCCeeEE--EecCCCChHHHHHHHH
Q 021440          198 AVLVIDPITGQKIC--SWCGMINPQPLGEMLL  227 (312)
Q Consensus       198 ~i~IIdprTGe~v~--~~~G~~~~~~fl~~L~  227 (312)
                      +|.++..  |+...  .+.|..+.+.|++-|.
T Consensus        88 tl~~f~~--g~~~~~~~y~G~~t~~~l~~fi~  117 (140)
T d2b5ea1          88 TIVLYPG--GKKSESVVYQGSRSLDSLFDFIK  117 (140)
T ss_dssp             EEEEECC--TTSCCCCBCCSCCCHHHHHHHHH
T ss_pred             eEEEEEC--CEEcceeEeCCCCCHHHHHHHHH
Confidence            9999963  65443  3678888777555443

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.80  E-value=1.7e-05  Score=64.12  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             HHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHH---hh--ccEEEEEeccCCh---------------------hH-
Q 021440          132 ALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQI---IS--VNFIFWQEYDDTS---------------------EG-  184 (312)
Q Consensus       132 Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~---i~--~nFIfwq~~~ds~---------------------EG-  184 (312)
                      +.-++|.+|||+.++||.+|+....      .+.++   .+  .+|+++.++.|..                     .+ 
T Consensus        24 s~l~GK~vll~FwAtWC~pC~~~~p------~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~   97 (144)
T d1i5ga_          24 PSLAGKTVFFYFSASWCPPSRAFTP------QLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGM   97 (144)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHH------HHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHH
T ss_pred             HHcCCCEEEEEEEecCCchHhhhhH------hHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHH
Confidence            3447899999999999999987643      33332   21  2566666655532                     22 


Q ss_pred             HHHHHhcCCCCCCeEEEEeCCCCeeEE
Q 021440          185 WKVCSFYNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       185 ~~~~~~Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      ..+.+.|.+..+|+++|||+.+|+.+.
T Consensus        98 ~~l~~~y~v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          98 EFLTTGFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             HHHHHHCCCCCcCEEEEEeCCCCEEEe
Confidence            246788999999999999986687764

>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: FG-binding, C-terminal domain of TAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.2e-05  Score=54.91  Aligned_cols=46  Identities=17%  Similarity=0.315  Sum_probs=42.4

Q ss_pred             CCCchhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            2 ESESIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         2 ~~~s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      +.++.++.++|..|... ||-+.+=++++|+.++||++.|+..|-+.
T Consensus         1 P~ls~~Qq~mv~~~s~~-T~mn~e~s~~cLe~~~Wd~~~A~~~F~~l   46 (59)
T d1oaia_           1 PTLSPEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHL   46 (59)
T ss_dssp             CCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45678899999999999 99999999999999999999999999753

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.59  E-value=9.6e-05  Score=58.50  Aligned_cols=76  Identities=16%  Similarity=0.146  Sum_probs=52.9

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh-ccEEEEEeccCCh----------------------hHHHHHHh
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS-VNFIFWQEYDDTS----------------------EGWKVCSF  190 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~-~nFIfwq~~~ds~----------------------EG~~~~~~  190 (312)
                      -++|.+||++.++||.+|+..-..+-  +-..++-. .++++..++.+..                      .+.++.+.
T Consensus        24 l~GK~vll~Fwa~wC~~C~~~~~~l~--~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~  101 (144)
T d1o8xa_          24 LAGKLVFFYFSASWCPPARGFTPQLI--EFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKH  101 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHH--HHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHH
T ss_pred             hCCCEEEEEeccccccccccccchhH--HhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHH
Confidence            36899999999999999987754331  12222211 2466666655531                      34468889


Q ss_pred             cCCCCCCeEEEEeCCCCeeEE
Q 021440          191 YNMDSIPAVLVIDPITGQKIC  211 (312)
Q Consensus       191 Y~~~~~P~i~IIdprTGe~v~  211 (312)
                      |.+..+|++.|||+.+|+.+.
T Consensus       102 y~v~~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_         102 FNVESIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             TTCCSSSEEEEEETTTCCEEE
T ss_pred             cCCCcCCEEEEEeCCCCEEEE
Confidence            999999999999987677653

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=97.55  E-value=6.7e-05  Score=48.46  Aligned_cols=39  Identities=18%  Similarity=0.352  Sum_probs=35.0

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAV   48 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~   48 (312)
                      ....|.+.+++  |-++++|++-|+.|+|||+.|++..+++
T Consensus         4 k~~ai~eL~~M--GF~e~~A~~AL~k~~wnleaAtN~LLd~   42 (43)
T d2g3qa1           4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            45689999999  9999999999999999999999987763

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=0.00083  Score=56.20  Aligned_cols=79  Identities=15%  Similarity=0.087  Sum_probs=50.4

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccC--------Ch-------------------hHHH
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDD--------TS-------------------EGWK  186 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~d--------s~-------------------EG~~  186 (312)
                      -++|++||+|..+||.+|+.---.+   ..+.+-.++++.|+.+...        +.                   ++..
T Consensus        30 ~kGk~vvl~FwatwCp~C~~~~p~l---~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~  106 (187)
T d2cvba1          30 FHEPLLAVVFMCNHCPYVKGSIGEL---VALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE  106 (187)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTHHHH---HHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH
T ss_pred             hCCCeEEEEEeCCCCccchhhhhhh---hhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhh
Confidence            3579999999999999997552211   1222223444555554321        11                   2234


Q ss_pred             HHHhcCCCCCCeEEEEeCCCCeeEEEecCCCC
Q 021440          187 VCSFYNMDSIPAVLVIDPITGQKICSWCGMIN  218 (312)
Q Consensus       187 ~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~  218 (312)
                      ++..|.+..+|++.|||+ +|+.+  +.|.++
T Consensus       107 ~~~~~~v~~~P~~~liD~-~G~i~--y~G~id  135 (187)
T d2cvba1         107 VAKAYRALRTPEVFLFDE-RRLLR--YHGRVN  135 (187)
T ss_dssp             HHHHTTCCEESEEEEECT-TCBEE--EEECSS
T ss_pred             hcccccccceeeEEEEcC-CCeEE--EEeeec
Confidence            667888899999999997 68876  456543

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.04  E-value=0.00061  Score=54.56  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=63.2

Q ss_pred             HHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-------------------HHHHhcC
Q 021440          133 LAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-------------------KVCSFYN  192 (312)
Q Consensus       133 k~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-------------------~~~~~Y~  192 (312)
                      ..++|+++|+++ ..||+.|..-.+.+-  +...+|-+.++.++.+..++++..                   .+++.|.
T Consensus        27 ~~~gk~vvl~f~~~~~cp~C~~~~~~l~--~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  104 (160)
T d2cx4a1          27 LKRGRPAVLIFFPAAFSPVCTKELCTFR--DKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYN  104 (160)
T ss_dssp             HTTSSCEEEEECSCTTCHHHHHHHHHHH--HTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTT
T ss_pred             hhCCCEEEEEecccccCCchhhhhhhhh--cccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcC
Confidence            346899999998 789999976543321  111222334566777776765432                   3445555


Q ss_pred             C----------CCCCeEEEEeCCCCeeEEEecCC-----CChHHHHHHHHHHHhh
Q 021440          193 M----------DSIPAVLVIDPITGQKICSWCGM-----INPQPLGEMLLPFMDR  232 (312)
Q Consensus       193 ~----------~~~P~i~IIdprTGe~v~~~~G~-----~~~~~fl~~L~~fl~~  232 (312)
                      +          ...|++.|||+ .|....+|.+.     .+.+++++.|++++.+
T Consensus       105 v~~~~~~~~~~~~~~~~flId~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         105 VYHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             CEEEEETTEEEEECCEEEEECT-TSBEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             ccccccccccccceeeEEEEcC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence            4          23689999997 69988887542     3678888888887643

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.00052  Score=59.02  Aligned_cols=99  Identities=13%  Similarity=0.184  Sum_probs=68.1

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc--EEEEEeccCChhHHHHHHhcCCCCCCeEEE
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN--FIFWQEYDDTSEGWKVCSFYNMDSIPAVLV  201 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n--FIfwq~~~ds~EG~~~~~~Y~~~~~P~i~I  201 (312)
                      .|.+++.. ...+.|++|.|+.+||..|..|+.      .+.++..++  --|..++.+.   ..++..|++..+|+|++
T Consensus       109 ~f~~~v~~-~~~~~~Vvvhfy~~~~~~C~~~~~------~l~~lA~~~~~vkF~ki~~~~---~~~~~~~~i~~lPtl~~  178 (217)
T d2trcp_         109 QFLETIEK-EQKVTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRASN---TGAGDRFSSDVLPTLLV  178 (217)
T ss_dssp             HHHHHHHH-SCTTCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHHH---HTCSTTSCGGGCSEEEE
T ss_pred             HHHHHHHh-cCCCCeEEEEEEcCCCCChhhhhh------hHHHHhhhcccceEEEEcccc---chhHHhCCCCCCCeEEE
Confidence            36666542 234679999999999999999964      445555543  4466665442   22567899999999999


Q ss_pred             EeCCCCeeEEEecCCCC--hHH-HHHHHHHHHhhCC
Q 021440          202 IDPITGQKICSWCGMIN--PQP-LGEMLLPFMDRSP  234 (312)
Q Consensus       202 IdprTGe~v~~~~G~~~--~~~-fl~~L~~fl~~~~  234 (312)
                      .-  .|+.+..+.|..+  .++ ..+.|..||.++.
T Consensus       179 yk--~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         179 YK--GGELISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EE--TTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EE--CCEEEEEEECccccccccCCHHHHHHHHHHcC
Confidence            96  5999999877531  122 2466788887664

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.002  Score=50.56  Aligned_cols=36  Identities=11%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             CeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhhC
Q 021440          197 PAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDRS  233 (312)
Q Consensus       197 P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~~  233 (312)
                      +.+.|||| .|+.+..|.+..+++++++.|.+.|.+|
T Consensus       125 ~~~~LId~-~G~i~~~~~~~~~~~~i~~~I~~~lk~~  160 (160)
T d1wp0a1         125 IIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY  160 (160)
T ss_dssp             CEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred             ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            68899998 6999988988889999999999999765

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.61  E-value=0.0017  Score=46.76  Aligned_cols=42  Identities=17%  Similarity=0.232  Sum_probs=38.4

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ..++.|.+.+++  |-+.+.|++-|++|+||+|.|++..|++.+
T Consensus        28 ~~ee~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          28 ASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSG   69 (73)
T ss_dssp             CCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred             cCHHHHHHHHHh--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            357899999999  889999999999999999999999999754

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.55  E-value=0.0036  Score=50.73  Aligned_cols=90  Identities=12%  Similarity=0.099  Sum_probs=62.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------HHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------~~~  187 (312)
                      .+||++|+++ ..||+.|..-.+.+  .....+|-+.++.++.++.++.+-                          ..+
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l--~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  109 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQF--SDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAI  109 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHH
T ss_pred             CCCeEEEEEcccccccccchhhHHH--HHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHH
Confidence            5699999998 89999999864443  334455666789999998887532                          234


Q ss_pred             HHhcCC------CCCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHH
Q 021440          188 CSFYNM------DSIPAVLVIDPITGQKICSWCGM----INPQPLGEMLL  227 (312)
Q Consensus       188 ~~~Y~~------~~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~  227 (312)
                      +..|.+      -.+|++.|||+ .|...+++.+.    -+++++|+.|+
T Consensus       110 ~~~y~v~~~~~g~~~r~tfvID~-~G~Ir~~~~~~~~~~~~~~evL~~l~  158 (167)
T d1e2ya_         110 ARAYGVLDEDSGVAYRGVFIIDP-NGKLRQIIINDMPIGRNVEEVIRLVE  158 (167)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHcCCCcccCCCceeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence            555665      13688999997 58876664322    25678777664

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.0025  Score=51.80  Aligned_cols=91  Identities=10%  Similarity=0.035  Sum_probs=60.9

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-----------------------HHHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-----------------------WKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-----------------------~~~~~~  190 (312)
                      ++||++|+++ ..||+.|..-...+  .....+|-+.+..++.++.++.+.                       .++++.
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~--~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~  120 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAF--SKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQA  120 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHH
T ss_pred             CCCeEEEEEecCCCCcccccccccc--ccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHH
Confidence            5789999998 78999997654433  234455556678888888876432                       245566


Q ss_pred             cCC-----CCCCeEEEEeCCCCeeEEEecCC--C--ChHHHHHHHHH
Q 021440          191 YNM-----DSIPAVLVIDPITGQKICSWCGM--I--NPQPLGEMLLP  228 (312)
Q Consensus       191 Y~~-----~~~P~i~IIdprTGe~v~~~~G~--~--~~~~fl~~L~~  228 (312)
                      |.+     ...|+..|||+ .|...+.|.+.  +  ..+++++.|..
T Consensus       121 ygv~~~~~~~~r~~fvID~-~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         121 AGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             HTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             cCCCccCCccceeEEEEcC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            665     46788999997 58887665432  2  45666665553

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.002  Score=45.12  Aligned_cols=44  Identities=11%  Similarity=0.225  Sum_probs=39.5

Q ss_pred             chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +...++.|.+.+++  |-+.+.|++-|..|+||+|.|++..|.+..
T Consensus        16 ~~~de~~v~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~Lls~~~   59 (63)
T d1wgna_          16 SPSERQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSG   59 (63)
T ss_dssp             CHHHHHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred             CchhHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            34467899999999  889999999999999999999999999754

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00075  Score=43.42  Aligned_cols=38  Identities=13%  Similarity=0.266  Sum_probs=34.6

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF   46 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff   46 (312)
                      +.++.|.+.+++  |=+.+.|++-|.+++||+|.|++.-|
T Consensus         3 ~~e~~i~~L~~M--GF~~~~a~~AL~~~~~N~e~A~~~Ll   40 (41)
T d1oqya1           3 EYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLL   40 (41)
T ss_dssp             THHHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred             hHHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            467899999999  99999999999999999999998654

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.0061  Score=47.35  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             CCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHhh
Q 021440          194 DSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       194 ~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~~  232 (312)
                      ...|++.|||| .|+.+..|.+..+++.+++.|.+-|+.
T Consensus       128 ~h~~~~fLID~-~G~vv~~~~~~~~~~~~~~~I~e~ik~  165 (169)
T d2b7ka1         128 DHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKS  165 (169)
T ss_dssp             TTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             eccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            44699999998 699999998888888877777666654

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0086  Score=41.64  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      -..+.|.+.+++  |-+...|++-|.++++|+|.||+-.|++.+
T Consensus         8 ~d~~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~~wL~~~~~   49 (63)
T d1wjia_           8 VDEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNK   49 (63)
T ss_dssp             SCHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred             cCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            457899999999  999999999999999999999999999865

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.016  Score=44.39  Aligned_cols=96  Identities=11%  Similarity=0.262  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhc--cEEEEEe---ccCChhHHHHHHhcC--CCCC
Q 021440          124 SFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISV--NFIFWQE---YDDTSEGWKVCSFYN--MDSI  196 (312)
Q Consensus       124 sf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~--nFIfwq~---~~ds~EG~~~~~~Y~--~~~~  196 (312)
                      +|++.+    .++|.+||.+..+||..|.  | ..|  ..+...+.+  +-+.=++   .++..+...++..|.  +..|
T Consensus        13 nFd~~i----~~~~~~lV~F~~~wc~~~~--~-~~~--~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~y   83 (122)
T d1g7ea_          13 TFYKVI----PKSKFVLVKFDTQYPYGEK--Q-DEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESY   83 (122)
T ss_dssp             HHHHHG----GGSSEEEEEEECSSCCTTT--T-HHH--HHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSC
T ss_pred             hHHHHH----hhCCeEEEEEecCCcCccc--C-HHH--HHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCC
Confidence            455544    6689999999999996553  2 112  233333333  2222223   346677788888765  6799


Q ss_pred             CeEEEEeCCCCee--EEEecCCCChHHHHHHHHHHHhhCC
Q 021440          197 PAVLVIDPITGQK--ICSWCGMINPQPLGEMLLPFMDRSP  234 (312)
Q Consensus       197 P~i~IIdprTGe~--v~~~~G~~~~~~fl~~L~~fl~~~~  234 (312)
                      |+|.+.-.  |..  ...+.|..+.+.    |.+|++++.
T Consensus        84 PTi~~f~~--G~~~~~~~y~G~rt~~~----l~~fi~~~~  117 (122)
T d1g7ea_          84 PVFYLFRD--GDFENPVPYSGAVKVGA----IQRWLKGQG  117 (122)
T ss_dssp             EEEEEEES--SCCCCCEEEESCCCHHH----HHHHHHTTS
T ss_pred             CeEEEEec--CcccCceecCCCCCHHH----HHHHHHhcc
Confidence            99999874  543  346889888777    556666654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=96.04  E-value=0.015  Score=47.21  Aligned_cols=93  Identities=14%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             HHHcCCeEEEEeecC-CCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-----------------------HH
Q 021440          132 ALAQDKWLLVNLQST-KEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-----------------------KV  187 (312)
Q Consensus       132 Ak~~~KwLLVniq~~-~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-----------------------~~  187 (312)
                      +.-.+||++|+++-. ||+.|..--.++  .+...+|-+.++.++.++.|+.+..                       ++
T Consensus        27 sd~~GK~vvl~F~p~~~~p~C~~e~~~~--~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v  104 (166)
T d1we0a1          27 ADLKGKWSIVVFYPADFSFVCPTELEDV--QKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTI  104 (166)
T ss_dssp             TTTSSSEEEEEECSCTTCSSCTHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHH
T ss_pred             HHhCCCeEEEEEecccCCcHHHHHHHHH--HHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHH
Confidence            345679999999955 999998654433  3344556667899999999986532                       34


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLL  227 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~  227 (312)
                      ++.|.+-      ..|...|||| .|.....+.+.    -+++++++.|+
T Consensus       105 ~~~ygv~~~~~~~~~r~tfvID~-~G~I~~~~i~~~~~~r~~~eil~~lk  153 (166)
T d1we0a1         105 SRQFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVK  153 (166)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred             HHHhCCCccccCcccceEEEECC-CCcEEEEEEcCCCCCCCHHHHHHHHH
Confidence            4556551      3577899998 58876664332    25677766654

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.01  E-value=0.0057  Score=51.45  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=65.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH--------------------------HHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG--------------------------WKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG--------------------------~~~  187 (312)
                      .+||++++++ ..+|+.|..=...+  .+...+|-+.+..++.++.|+.+.                          .++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f--~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v  109 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI  109 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHH--HhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchH
Confidence            5799999999 88999998654433  344566667799999999887543                          246


Q ss_pred             HHhcCC------CCCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHH
Q 021440          188 CSFYNM------DSIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLP  228 (312)
Q Consensus       188 ~~~Y~~------~~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~  228 (312)
                      +..|.+      -.+|...|||| .|...+.|...    ...+++++.|+.
T Consensus       110 ~~~ygv~~~~~~~~~R~tfvID~-~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         110 MKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHcCCeeccCCceEEEEEEECC-CCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            677766      23788999997 68877776433    256777766654

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.92  E-value=0.016  Score=46.52  Aligned_cols=90  Identities=13%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||++++++ ..+|+.|..-.+.+  ++...+|-+.+..++.++.|+.+..                          ++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~--~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~  102 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI  102 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhH--HHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHH
Confidence            5899999999 78999998654433  3445667778999999999876432                          34


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLL  227 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~  227 (312)
                      +..|.+.      ..|...|||+ .|...++|.+.+    ..+++++.|+
T Consensus       103 ~~~ygv~~~~~g~~~R~tfvID~-~G~I~~~~i~~~~~~~~~~EiL~~lk  151 (158)
T d1zyea1         103 SRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVK  151 (158)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHhccccCCccccEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            4556552      3567899998 688777765433    4567776665

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.89  E-value=0.018  Score=46.56  Aligned_cols=92  Identities=8%  Similarity=0.049  Sum_probs=54.8

Q ss_pred             HcCCeEEEEeecCCCc-ccchhhcccCCCHHHHHHhh---ccEEEEEecc----CChhHH-HHHHh--------------
Q 021440          134 AQDKWLLVNLQSTKEF-SSLMLNRDTWGNEAVSQIIS---VNFIFWQEYD----DTSEGW-KVCSF--------------  190 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f-~c~~lnRDvw~~~~V~~~i~---~nFIfwq~~~----ds~EG~-~~~~~--------------  190 (312)
                      =.+||+||++..++|. .|...-..+=   .+.+-+.   .++.++.+.+    |+++.. +|+..              
T Consensus        29 ~~Gk~vvl~F~~t~Cp~~C~~~~~~l~---~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~  105 (172)
T d1xzoa1          29 LKGEVWLADFIFTNCETICPPMTAHMT---DLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGY  105 (172)
T ss_dssp             GTTCCEEEEEECSCCSSCCCSHHHHHH---HHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCS
T ss_pred             hCCCEEEEEEecccccccccccchhhh---hhhhhhccccccccccccccccccchHHHHHHHHHHhccccccceeeccc
Confidence            3589999999999995 5776644331   2222222   3455555554    333321 22222              


Q ss_pred             ------------cCC-----------CCCCeEEEEeCCCCeeEEEecCCC--ChHHHHHHHHHH
Q 021440          191 ------------YNM-----------DSIPAVLVIDPITGQKICSWCGMI--NPQPLGEMLLPF  229 (312)
Q Consensus       191 ------------Y~~-----------~~~P~i~IIdprTGe~v~~~~G~~--~~~~fl~~L~~f  229 (312)
                                  |..           ...|.+.|||| .|+.+..+.|..  ..+++++.|+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~dik~~  168 (172)
T d1xzoa1         106 SQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSA  168 (172)
T ss_dssp             CHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcC-CCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence                        221           11267899998 599888888863  568888887653

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0067  Score=45.44  Aligned_cols=80  Identities=16%  Similarity=0.059  Sum_probs=54.9

Q ss_pred             cCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCeeEEEec
Q 021440          135 QDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQKICSWC  214 (312)
Q Consensus       135 ~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~  214 (312)
                      ..-..++.+..+||..|+.+..-+.       -+...|-+.-+.+|..+...+.+.|.+. .|.|. ||   |+.+  ..
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~-------~~~~~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~-id---g~~~--~~   79 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQ-------PYKDRFILQEVDITLPENSTWYERYKFD-IPVFH-LN---GQFL--MM   79 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTS-------TTSSSSEEEEEETTSSTTHHHHHHSSSS-CSEEE-ES---SSEE--EE
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHH-------HhhhhcceEEEecccccCHHHHHHhccc-CCcee-ec---CceE--Ee
Confidence            3345688899999999998853322       2233444444566777778899999987 89765 45   6655  34


Q ss_pred             CCCChHHHHHHHHH
Q 021440          215 GMINPQPLGEMLLP  228 (312)
Q Consensus       215 G~~~~~~fl~~L~~  228 (312)
                      |.++.+.+.+.|++
T Consensus        80 g~~d~~~L~~~L~~   93 (100)
T d1wjka_          80 HRVNTSKLEKQLRK   93 (100)
T ss_dssp             SSCCHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHH
Confidence            67888887777765

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.034  Score=44.35  Aligned_cols=97  Identities=7%  Similarity=0.027  Sum_probs=59.4

Q ss_pred             HHHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-H------------------HHHhc
Q 021440          132 ALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-K------------------VCSFY  191 (312)
Q Consensus       132 Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-~------------------~~~~Y  191 (312)
                      .+.+++|++++++ ..||+.|..--+.+  .+...+| +++++++.++.|+.+.. +                  ++..|
T Consensus        29 ~~~k~~~vvlff~p~~~cp~C~~~~~~~--~~~~~~~-~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~y  105 (156)
T d2a4va1          29 ITENNRVVVFFVYPRASTPGSTRQASGF--RDNYQEL-KEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLL  105 (156)
T ss_dssp             HHHHCSEEEEEECSSSSSHHHHHHHHHH--HHHHHHH-TTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHH
T ss_pred             HcCCccEEEEEecccccCcchhhhhHHH--HHHHHHH-hhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHc
Confidence            4457899999998 78999998855444  2334444 67788889988876542 3                  44555


Q ss_pred             CCCCCCe-----EEEEeCCCCeeEEEecCCC---ChHHHHHHHHHHHhh
Q 021440          192 NMDSIPA-----VLVIDPITGQKICSWCGMI---NPQPLGEMLLPFMDR  232 (312)
Q Consensus       192 ~~~~~P~-----i~IIdprTGe~v~~~~G~~---~~~~fl~~L~~fl~~  232 (312)
                      .+...|.     -.+|+. .|..+.+|.|..   .+.+-++.+.++|++
T Consensus       106 gv~~~~~~~~~r~~~i~~-dg~i~~~~~~~~~~~~~~~~~~evl~~lk~  153 (156)
T d2a4va1         106 GAKKTPLSGSIRSHFIFV-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK  153 (156)
T ss_dssp             TCBSSSSSCBCCEEEEEE-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCCeeEEEEEEE-CCeEEEEEEEeCCCCCcchHHHHHHHHHHH
Confidence            5433342     123333 477777766543   344455566666554

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.01  Score=44.10  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +-.++|.+.|++ ||++++.|.--|--|+.|++.||+..++++.
T Consensus        31 ~i~~kVkql~e~-T~rsede~~~ALhDcn~D~~~AIn~lLEg~~   73 (91)
T d1wj7a1          31 DFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGNP   73 (91)
T ss_dssp             HHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHH-hCCCHHHHHHHHhcCCccHHHHHHHHHhcCC
Confidence            346789999999 9999999999999999999999999998753

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.33  E-value=0.011  Score=40.32  Aligned_cols=41  Identities=12%  Similarity=0.092  Sum_probs=36.5

Q ss_pred             hhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            6 IDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         6 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      ....++|.+.-+. ||+..-.|+..|+.+|||+|.|+...-.
T Consensus         2 a~s~~lvk~LRe~-Tga~~~dcKkAL~e~~gD~ekA~e~Lrk   42 (56)
T d1xb2b1           2 ASSKELLMKLRRK-TGYSFINCKKALETCGGDLKQAESWLHK   42 (56)
T ss_dssp             HHHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3456899999999 8999999999999999999999987644

>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin carboxyl-terminal hydrolase 25
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.027  Score=40.20  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             hhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            7 DKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         7 ~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      .++-++.|..+||+..|...-.+-|+++++||..||...-+..
T Consensus        23 hqQ~lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~~   65 (80)
T d1vdla_          23 HQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN   65 (80)
T ss_dssp             CHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence            3677899999998889999999999999999999999887654

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.24  E-value=0.018  Score=41.09  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=37.7

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |=+.+.|++-|..++||+|.||+-.|++..
T Consensus        29 d~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~Av~~Lls~~~   69 (73)
T d1wiva_          29 DQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSG   69 (73)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            46789999999  899999999999999999999999999753

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.09  E-value=0.05  Score=45.16  Aligned_cols=97  Identities=13%  Similarity=0.120  Sum_probs=67.8

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH-H----------------------HHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW-K----------------------VCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~-~----------------------~~~~  190 (312)
                      ++||++++++ ..+++.|..--..+  ++...+|-+.+..++.++.|+.+.. +                      ++..
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f--~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~  106 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN  106 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHH
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHH--HHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHH
Confidence            7899999999 66778787654443  5566777788999999999987643 2                      3344


Q ss_pred             cCC------CCCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHHH--hhCC
Q 021440          191 YNM------DSIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPFM--DRSP  234 (312)
Q Consensus       191 Y~~------~~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~fl--~~~~  234 (312)
                      |.+      -..|...|||| .|...+.|...    ..+++.|+.|+.+-  ++++
T Consensus       107 yGv~~~~~g~~~r~tfiID~-~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ~~~~~~  161 (186)
T d1n8ja_         107 FDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHP  161 (186)
T ss_dssp             TTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHST
T ss_pred             hCCCcccCCcceeeEEEECc-hheEEEEeecCCCcccCHHHHHHHHHHHHHHHhcC
Confidence            554      13578899998 48765554221    37888888888664  4553

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.86  E-value=0.016  Score=46.10  Aligned_cols=83  Identities=10%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc----EEEEEeccCCh---------------------------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN----FIFWQEYDDTS---------------------------  182 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n----FIfwq~~~ds~---------------------------  182 (312)
                      ...|..+|.+.|..|+.|+.|.+.      +.++++.+    |+++....-.+                           
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~------l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~   97 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQ------LKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL   97 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTT------HHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHH------HHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhcc
Confidence            356888999999999999999754      57777654    33333322111                           


Q ss_pred             -----------hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHH
Q 021440          183 -----------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLP  228 (312)
Q Consensus       183 -----------EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~  228 (312)
                                 +-..+++.+.+...|++.+.|   |+.   ..|+++++.|.+.|.+
T Consensus        98 ~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~n---G~~---i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1          98 PKEVKTPNIVKKHYELGIQFGVRGTPSIVTST---GEL---IGGYLKPADLLRALEE  148 (150)
T ss_dssp             CSSCCCSSHHHHHHHHHHHHTCCSSCEEECTT---SCC---CCSCCCHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHhcCcCCCCEEEEcC---CcE---ecCCCCHHHHHHHHHh
Confidence                       233456788899999988765   653   6899999998887764

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.77  E-value=0.041  Score=47.59  Aligned_cols=101  Identities=10%  Similarity=0.016  Sum_probs=67.6

Q ss_pred             HHHcCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh-------------------------HH
Q 021440          132 ALAQDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE-------------------------GW  185 (312)
Q Consensus       132 Ak~~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E-------------------------G~  185 (312)
                      ...++||++++++ ..+|+.|..=...+  .....+|-+.+..++.++.|+.+                         ..
T Consensus        25 ~~~kGk~vVLff~P~dftpvCttEl~~~--~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~  102 (237)
T d2zcta1          25 YVSQGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQG  102 (237)
T ss_dssp             HHTTTCEEEEEEESCSSCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGG
T ss_pred             hhcCCCEEEEEEECCCCCccCHHHHHHH--HhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcch
Confidence            3457899999999 78999887543322  22345677778899999888643                         23


Q ss_pred             HHHHhcCC-------CCCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHH--HhhCCC
Q 021440          186 KVCSFYNM-------DSIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPF--MDRSPR  235 (312)
Q Consensus       186 ~~~~~Y~~-------~~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~f--l~~~~~  235 (312)
                      +++..|.+       ...|.+.|||| .|....++.+.    .+.+++|..|...  .+.+..
T Consensus       103 ~vak~yGv~~~~~~~~~~RatFIIDp-dG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ~~~~~~~  164 (237)
T d2zcta1         103 TVARRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKR  164 (237)
T ss_dssp             HHHHHTTCC----CCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCccccccccceeeeEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHHhhhccCCc
Confidence            46677876       36799999998 58764443221    2678888777443  344443

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.64  E-value=0.022  Score=38.17  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      +-++|.+.-+. ||+..-.|++.|+.+|||+|.|+...=.
T Consensus         2 ~~elvK~LR~~-Tga~~~dcKkAL~e~~gD~ekA~e~Lr~   40 (52)
T d1aipc1           2 QMELIKKLREA-TGAGMMDVKRALEDAGWDEEKAVQLLRE   40 (52)
T ss_dssp             HHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            45789999999 8999999999999999999999987644

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.059  Score=42.79  Aligned_cols=86  Identities=14%  Similarity=0.202  Sum_probs=59.0

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc----EEEEEeccCCh---------------------------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN----FIFWQEYDDTS---------------------------  182 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n----FIfwq~~~ds~---------------------------  182 (312)
                      ...|..+|-|.|..|+.|+.|..      .+.+++..+    |+.|.+....+                           
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~------~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   97 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHE------QMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS   97 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHT------THHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHH------HHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccc
Confidence            35689999999999999999964      455565544    33332211111                           


Q ss_pred             -----------hHHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHHHHHHHh
Q 021440          183 -----------EGWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEMLLPFMD  231 (312)
Q Consensus       183 -----------EG~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl~  231 (312)
                                 .-.++++.+.+...|+++|.|   |+.   ..|+++++.|.+.|.+.+.
T Consensus        98 ~~~~~~~~~i~~~~~la~~lgv~GTPt~~~~n---G~~---v~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1          98 VAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GTL---VPGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SCE---EESCCCHHHHHHHHHHHHH
T ss_pred             cchhhhcchHHHHHHHHHHcCCcCCCEEEEeC---CeE---ecCCCCHHHHHHHHHHHHH
Confidence                       223456778889999987655   654   4799999999888877654

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.30  E-value=0.038  Score=35.66  Aligned_cols=38  Identities=8%  Similarity=0.039  Sum_probs=34.5

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      ...+.+..++ +=.|.+...+.|.+++||++.||..-+.
T Consensus         6 ~~QL~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   43 (44)
T d2bwba1           6 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN   43 (44)
T ss_dssp             HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            4578899999 8899999999999999999999998875

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=94.07  E-value=0.062  Score=43.49  Aligned_cols=90  Identities=10%  Similarity=0.024  Sum_probs=60.1

Q ss_pred             CCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HHH
Q 021440          136 DKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KVC  188 (312)
Q Consensus       136 ~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~~  188 (312)
                      +||++++++ ..||+.|..--+++  +....+|-+.+...+.++.|+.+..                          .++
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~--~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~  110 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAF--DKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCEEEEEEEccccCCcCHHHHHHH--HHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH
Confidence            469999998 88999997654332  3445666677899999998876443                          344


Q ss_pred             HhcCC-----CCCCeEEEEeCCCCeeEEEecC--C--CChHHHHHHHHH
Q 021440          189 SFYNM-----DSIPAVLVIDPITGQKICSWCG--M--INPQPLGEMLLP  228 (312)
Q Consensus       189 ~~Y~~-----~~~P~i~IIdprTGe~v~~~~G--~--~~~~~fl~~L~~  228 (312)
                      +.|.+     -..|...|||+ .|.....+.+  .  .+++++|+.|+.
T Consensus       111 ~~ygv~~~~~~~~r~tfvID~-~G~I~~~~~~~~~~~~~~~eiL~~l~a  158 (170)
T d1zofa1         111 RDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDA  158 (170)
T ss_dssp             HHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             HHcCCCccccceeEEEEEEcC-CCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            55555     13578999997 5876554322  1  246777766643

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.069  Score=35.29  Aligned_cols=40  Identities=13%  Similarity=0.058  Sum_probs=36.4

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVN   49 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~   49 (312)
                      ...+.+..++ +=.|.+...+.|.+++||++.||...++..
T Consensus         9 ~~QL~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~~   48 (50)
T d2dnaa1           9 SKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQ   48 (50)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            4678999999 889999999999999999999999988754

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.041  Score=37.04  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=34.0

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      .++|.+.-+. ||+..-.|++-|+.++||+|.|+...=.
T Consensus         5 ~~~iK~LR~~-Tgag~~dCKkAL~e~~gD~ekA~e~Lr~   42 (54)
T d1efub3           5 ASLVKELRER-TGAGMMDCKKALTEANGDIELAIENMRK   42 (54)
T ss_dssp             HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3688899999 8999999999999999999999987644

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.34  E-value=0.08  Score=31.78  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHH
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILL   44 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~l   44 (312)
                      ..+|.|.+++  |-|+-+|.|-|.++|+||+.|.+.
T Consensus         3 nskiaqlvsm--gfdpleaaqaldaangdldvaasf   36 (38)
T d1z96a1           3 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASF   36 (38)
T ss_dssp             HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred             chHHHHHHHc--CCCHHHHHHHHhhhcCcHHHHHHh
Confidence            3578999988  999999999999999999998764

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.62  E-value=0.22  Score=39.57  Aligned_cols=74  Identities=12%  Similarity=-0.050  Sum_probs=50.3

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHHHHHHhcCC---CCCCeEEEEeCCCCe
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGWKVCSFYNM---DSIPAVLVIDPITGQ  208 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~~~~~~Y~~---~~~P~i~IIdprTGe  208 (312)
                      -++|+.+++|..+||.+|+...      |.+.++-+  .++-|.-++  ..+.......|..   ..+|+++++|. .+.
T Consensus        52 ~~~~~~~l~~~~tWC~~C~~~~------P~l~~l~~~~~~~~~~~i~--~d~~~~~~~~~~~~~~~~~p~~~~~d~-~~~  122 (166)
T d1z6na1          52 IERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIIS--KGRAEDDLRQRLALERIAIPLVLVLDE-EFN  122 (166)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEEC--HHHHHHHTTTTTTCSSCCSSEEEEECT-TCC
T ss_pred             hcCCeEEEEEEeCcCccHHHHH------HHHHHHHHHCCCCcEEEEE--CccCHHHHHHHHHhccccccceeecCc-cch
Confidence            3789999999999999999874      44444433  344444333  3355566666643   56899999885 577


Q ss_pred             eEEEecCC
Q 021440          209 KICSWCGM  216 (312)
Q Consensus       209 ~v~~~~G~  216 (312)
                      .+..|.+.
T Consensus       123 ~~~~~~~~  130 (166)
T d1z6na1         123 LLGRFVER  130 (166)
T ss_dssp             EEEEEESS
T ss_pred             hccccccc
Confidence            77778764

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=92.37  E-value=0.22  Score=40.02  Aligned_cols=91  Identities=12%  Similarity=0.106  Sum_probs=60.7

Q ss_pred             CCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HHH
Q 021440          136 DKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KVC  188 (312)
Q Consensus       136 ~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~~  188 (312)
                      +||++|+++ ..+|+-|..-.+++  ++...+|-+.+...+.++.|+.+..                          .++
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f--~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  104 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIAL--DKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  104 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHH--hhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHH
Confidence            589999998 68899887665443  3445567777999999999976433                          344


Q ss_pred             HhcCC-----CCCCeEEEEeCCCCeeEEEecCCC----ChHHHHHHHHHH
Q 021440          189 SFYNM-----DSIPAVLVIDPITGQKICSWCGMI----NPQPLGEMLLPF  229 (312)
Q Consensus       189 ~~Y~~-----~~~P~i~IIdprTGe~v~~~~G~~----~~~~fl~~L~~f  229 (312)
                      ..|.+     ...+...|||+ .|.....|.+.+    .++++++.|..+
T Consensus       105 ~~ygv~~~~~~~~R~tfiId~-~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         105 RSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             HHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HHhCCccccccceeeeEEEcC-CCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            55554     22468888887 577665553322    456666666553

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.19  Score=41.41  Aligned_cols=32  Identities=3%  Similarity=0.126  Sum_probs=26.3

Q ss_pred             eEEEEeCCCCeeEEEecCCCChHHHHHHHHHHH
Q 021440          198 AVLVIDPITGQKICSWCGMINPQPLGEMLLPFM  230 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~~G~~~~~~fl~~L~~fl  230 (312)
                      +-.+|| |.|+.+++|.+..+|+++...+.+.|
T Consensus       152 tKFLId-r~G~vv~rf~~~~~p~~i~~~Ie~lL  183 (184)
T d2f8aa1         152 EKFLVG-PDGVPLRRYSRRFQTIDIEPDIEALL  183 (184)
T ss_dssp             CEEEEC-TTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             EEEEEC-CCCCEEEEECCCCCHHHHHHHHHHHh
Confidence            458999 57999999998889988877777765

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.12  Score=43.16  Aligned_cols=93  Identities=9%  Similarity=0.009  Sum_probs=62.6

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChh--------------------------HHHH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSE--------------------------GWKV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~E--------------------------G~~~  187 (312)
                      .+||++++++ ..+|+.|..--..+  .+...+|-+.+..++.++.|+.+                          ..++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~--~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~v  110 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAF--SNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRL  110 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEecccccccchhhhHHH--HHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHH
Confidence            4799999999 77889886643332  34456677779999999888643                          2245


Q ss_pred             HHhcCCC------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHHH
Q 021440          188 CSFYNMD------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPFM  230 (312)
Q Consensus       188 ~~~Y~~~------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~fl  230 (312)
                      +..|.+-      .++...|||| .|.....+...    -..++++..|+.+-
T Consensus       111 a~~ygv~~~~~g~~~R~tfiID~-~g~Ir~~~~~~~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_         111 SEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCCeeeEEEEEECC-CCcEEEEEecCCCcccCHHHHHHHHHhhc
Confidence            5666661      4788999998 57765554332    25777777665554

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.38  E-value=0.16  Score=34.75  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             HHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            9 ESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         9 ~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      ...+.+..++ +=.|.+...+.|.+++||++.||+.-+.
T Consensus        23 ~~QL~qL~eM-GF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          23 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            6789999999 8889999999999999999999998764

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.4  Score=38.19  Aligned_cols=84  Identities=7%  Similarity=-0.010  Sum_probs=56.1

Q ss_pred             HcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhcc---EEEEEeccCChh---------------------------
Q 021440          134 AQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVN---FIFWQEYDDTSE---------------------------  183 (312)
Q Consensus       134 ~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~n---FIfwq~~~ds~E---------------------------  183 (312)
                      ..-+..++.+.|..|+.|+.+.+.      +.+++.++   |++..+..-.++                           
T Consensus        34 ~~a~~tv~vF~D~~CP~C~~~~~~------l~~l~~~~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~  107 (169)
T d1v58a1          34 KDAPVIVYVFADPFCPYCKQFWQQ------ARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGK  107 (169)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHH------HHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTC
T ss_pred             CCCCEEEEEEECCCCcchHHHHHH------HHHHHhccceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhc
Confidence            344666788888899999888754      56677554   455554333221                           


Q ss_pred             -------------------HHHHHHhcCCCCCCeEEEEeCCCCeeEEEecCCCChHHHHHH
Q 021440          184 -------------------GWKVCSFYNMDSIPAVLVIDPITGQKICSWCGMINPQPLGEM  225 (312)
Q Consensus       184 -------------------G~~~~~~Y~~~~~P~i~IIdprTGe~v~~~~G~~~~~~fl~~  225 (312)
                                         ..++++.+.+...|+|+|.|+ +|+ +++..|..+++.|.+.
T Consensus       108 ~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~-~g~-~~~~~G~~~~~~l~~i  166 (169)
T d1v58a1         108 LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENT-LQQAVGLPDQKTLNII  166 (169)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTE-EEEEESSCCHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHH
Confidence                               223445677899999999997 464 5678998888765544

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.59  E-value=0.97  Score=35.61  Aligned_cols=87  Identities=15%  Similarity=-0.002  Sum_probs=50.9

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------HHHHhcCC
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------KVCSFYNM  193 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------~~~~~Y~~  193 (312)
                      .+||++++++ +.||+.|..--+.+.     ..+-..+..++.+..|++...                    .+...|.+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~-----~~~~~~g~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  116 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFD-----ERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGV  116 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHH-----HHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTC
T ss_pred             CCcEEEEEeeecccccccHHHHHHHh-----hhcccccccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCe
Confidence            5789999998 557888876543321     222234566677776664322                    12344443


Q ss_pred             C---------CCCeEEEEeCCCCeeEEEecC--C---CChHHHHHHHH
Q 021440          194 D---------SIPAVLVIDPITGQKICSWCG--M---INPQPLGEMLL  227 (312)
Q Consensus       194 ~---------~~P~i~IIdprTGe~v~~~~G--~---~~~~~fl~~L~  227 (312)
                      .         ..|++.|||+ .|..+..|.+  .   .+.++.++.|.
T Consensus       117 ~~~~~~~~g~~~ra~fvID~-~G~I~y~~~~~~~~~~~~~d~il~aL~  163 (166)
T d1xvqa_         117 TIADGPMAGLLARAIVVIGA-DGNVAYTELVPEIAQEPNYEAALAALG  163 (166)
T ss_dssp             BBCSSTTTTSBCSEEEEECT-TSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred             eeccCcccCceeeEEEEEeC-CCEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence            1         2368999997 6988766532  1   24566665554

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.74  Score=38.68  Aligned_cols=92  Identities=12%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhH-----------------------------
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEG-----------------------------  184 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG-----------------------------  184 (312)
                      .+||++++++ ..+|+.|..-.+.+  .....+|-+.+..++.++.|+.+.                             
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~--~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~  103 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRA--AKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN  103 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHH--HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHH--HHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcc
Confidence            4699999999 56899997654332  455566777899999998887543                             


Q ss_pred             HHHHHhcCCC------------CCCeEEEEeCCCCeeEEEecCC----CChHHHHHHHHHH
Q 021440          185 WKVCSFYNMD------------SIPAVLVIDPITGQKICSWCGM----INPQPLGEMLLPF  229 (312)
Q Consensus       185 ~~~~~~Y~~~------------~~P~i~IIdprTGe~v~~~~G~----~~~~~fl~~L~~f  229 (312)
                      .+++..|.+-            ..+.+.|||| .|..-..|...    -+++++|..|...
T Consensus       104 ~~va~~ygv~~~~~~~~~~~~~~~RatFIID~-~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         104 RELAILLGMLDPAEKDEKGMPVTARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             cHHHHHhCCccccccccccceeeeEEEEEEcC-ccceeEEEEecCCcccchHHHHHHHHHH
Confidence            2455666651            3578999998 57765554221    2688888776554

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.48  E-value=0.94  Score=34.56  Aligned_cols=87  Identities=16%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             HHcCCeE--EEEeecCCCcccchhhcccCCCHHHHHHh--hccEEEEEeccCChhHHHHHHhcCCCCCCeEEEEeCCCCe
Q 021440          133 LAQDKWL--LVNLQSTKEFSSLMLNRDTWGNEAVSQII--SVNFIFWQEYDDTSEGWKVCSFYNMDSIPAVLVIDPITGQ  208 (312)
Q Consensus       133 k~~~KwL--LVniq~~~~f~c~~lnRDvw~~~~V~~~i--~~nFIfwq~~~ds~EG~~~~~~Y~~~~~P~i~IIdprTGe  208 (312)
                      ++-.+.|  .++++...|..|+.+..      -+.++.  ..+.-+--++.+++++..++..|++...|.++|.++  |+
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~------ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~--g~   89 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQ------LVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQD--GK   89 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHH------HHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEET--TB
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHH------HHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecC--Cc
Confidence            3344543  34444456777776632      111111  234555556788999999999999999999999985  44


Q ss_pred             eE-EEecCCCChHHHHHHHH
Q 021440          209 KI-CSWCGMINPQPLGEMLL  227 (312)
Q Consensus       209 ~v-~~~~G~~~~~~fl~~L~  227 (312)
                      .. .+|.|...-.+|-.-|.
T Consensus        90 ~~gIrF~GiP~GhEf~Slil  109 (119)
T d1a8la1          90 DFGVRYFGLPAGHEFAAFLE  109 (119)
T ss_dssp             CCSEEEESCCCTTHHHHHHH
T ss_pred             ccceEEEeccCchhHHHHHH
Confidence            32 24777655444443333

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.33  Score=32.92  Aligned_cols=46  Identities=17%  Similarity=0.110  Sum_probs=40.3

Q ss_pred             chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 021440            5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFAVNE   50 (312)
Q Consensus         5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~~~~   50 (312)
                      +...++.|.++.++=-..|.++-+..|++++||++.||+..+...+
T Consensus         6 s~~~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd   51 (59)
T d1wgla_           6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE   51 (59)
T ss_dssp             SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred             CcCcHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence            3345667999999988899999999999999999999999998764

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.19  E-value=0.26  Score=33.89  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSW-KLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~w-dLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |-+.+.|++-|..++. ++|.|++=.|++.+
T Consensus         9 d~~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~   50 (64)
T d1whca_           9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHED   50 (64)
T ss_dssp             CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHHCCC
Confidence            45689999999  9999999999999976 89999999999765

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.67  E-value=0.52  Score=37.19  Aligned_cols=86  Identities=13%  Similarity=-0.035  Sum_probs=49.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhHH---------------------HHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEGW---------------------KVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG~---------------------~~~~~  190 (312)
                      ++||++|++. +.||+.|+.--+.      +.+.+.  ++..++.+..++++..                     .+...
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~------l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRR------FNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRD  114 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHH------HHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHH
T ss_pred             CCcEEEEEeccccccccchhhHHH------HHHHHHhhcccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHh
Confidence            6788888888 6688888874322      222222  2455566666654311                     34455


Q ss_pred             cCC--CCCC----eEEEEeCCCCeeEEEecCC-----CChHHHHHHHH
Q 021440          191 YNM--DSIP----AVLVIDPITGQKICSWCGM-----INPQPLGEMLL  227 (312)
Q Consensus       191 Y~~--~~~P----~i~IIdprTGe~v~~~~G~-----~~~~~fl~~L~  227 (312)
                      |.+  ..+|    ++.|||+ .|.....|.+.     .+.++.++.|+
T Consensus       115 ygv~~~~~~~~~Ra~fvID~-~G~I~y~~~~~~~~~~~~~~~il~alk  161 (163)
T d1psqa_         115 YALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAK  161 (163)
T ss_dssp             HTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             heeecccccceeEEEEEECC-CCEEEEEEEcCCCCCCCCHHHHHHHHh
Confidence            654  3333    5789997 68887665332     23455555554

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=89.57  E-value=0.43  Score=37.81  Aligned_cols=73  Identities=21%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhh--ccEEEEEeccCChhH---------------------HHHHHh
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIIS--VNFIFWQEYDDTSEG---------------------WKVCSF  190 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~--~nFIfwq~~~ds~EG---------------------~~~~~~  190 (312)
                      ++|+++|++. +.||+.|..--+.      +.+...  .+..++.++.++++.                     ..++..
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~------l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  116 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRK------FNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQA  116 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHH------HHHHHHTSTTEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHH
T ss_pred             CCCeEEEEEecchhcccchHHHHH------HHHHHHhhccceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHh
Confidence            5788888887 6799999764332      233332  357777777776532                     245566


Q ss_pred             cCCC---------CCCeEEEEeCCCCeeEEEec
Q 021440          191 YNMD---------SIPAVLVIDPITGQKICSWC  214 (312)
Q Consensus       191 Y~~~---------~~P~i~IIdprTGe~v~~~~  214 (312)
                      |.+.         ..|++.|||+ .|.....|.
T Consensus       117 ygv~~~~~~~~g~~~ra~fvID~-~G~I~y~~~  148 (164)
T d1qxha_         117 YGVAIADGPLKGLAARAVVVIDE-NDNVIFSQL  148 (164)
T ss_dssp             TTCBBCSSTTTTSBCCEEEEECT-TSBEEEEEE
T ss_pred             cCeEeecCcccCcccCEEEEEcC-CCEEEEEEE
Confidence            6641         2367899997 688877664

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.41  Score=33.40  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=36.2

Q ss_pred             CchhhHHHHHhhhccc-------cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            4 ESIDKESRISSFLEIA-------VGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         4 ~s~~~~~~i~~F~~iT-------t~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      ++..+.+.|.+|.+..       ...|.....+||.+.+||++.|...+-.
T Consensus         8 lt~~q~~~l~elr~~l~~~~~~~~~~dd~~LlRFLrAr~fdv~kA~~ml~~   58 (75)
T d1olma1           8 LSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK   58 (75)
T ss_dssp             CCHHHHHHHHHHHHHHGGGGGGSSCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            5778888888886542       3467889999999999999999998865

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.33  Score=30.55  Aligned_cols=36  Identities=14%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             HHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHH
Q 021440           10 SRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFF   46 (312)
Q Consensus        10 ~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff   46 (312)
                      ..+.+..++ +=.|.+...+.|..++||++.||..-.
T Consensus         4 ~QL~~L~~M-GF~d~~~Ni~AL~~t~Gdv~~Aie~Ll   39 (41)
T d2daha1           4 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLR   39 (41)
T ss_dssp             HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            467888888 889999999999999999999998754

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=88.51  E-value=0.73  Score=36.41  Aligned_cols=76  Identities=18%  Similarity=0.096  Sum_probs=45.1

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH---------------------HHHHhcC
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW---------------------KVCSFYN  192 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~---------------------~~~~~Y~  192 (312)
                      .+||+++++. +.+|+.|..--+.+  +....+|  ++..++.++.|+++..                     .+...|.
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~--~~~~~~~--~~~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  116 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKF--NQQAAKL--SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLG  116 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHH--HHHHHHS--TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTT
T ss_pred             CCcEEEEEecCccccCcccHHHHHH--HHHHHHh--ccceEEeecCCcHHHHHHHHHHhCCccccccccccchhHHHhhc
Confidence            4688999888 45777786432221  1122222  2566777777765432                     3444555


Q ss_pred             C--C-------CCCeEEEEeCCCCeeEEEecC
Q 021440          193 M--D-------SIPAVLVIDPITGQKICSWCG  215 (312)
Q Consensus       193 ~--~-------~~P~i~IIdprTGe~v~~~~G  215 (312)
                      +  .       ..|.+.|||+ .|.....|.+
T Consensus       117 ~~~~~~~~~g~~~Ra~fvID~-~G~I~y~~~~  147 (164)
T d1q98a_         117 VDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV  147 (164)
T ss_dssp             CEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred             eecccCccccCcccEEEEECC-CCEEEEEEEC
Confidence            4  1       2378899996 6998887743

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.12  E-value=0.38  Score=31.61  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQATSW-KLDEAILLFFA   47 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~~w-dLe~Av~lff~   47 (312)
                      ....|.+.+++  |=+.+.|++-|..+++ |+|.|++=-|+
T Consensus        12 ~~~~l~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          12 HGSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             CCCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            45579999999  9999999999999887 99999987765

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.41  E-value=0.46  Score=36.69  Aligned_cols=74  Identities=9%  Similarity=-0.052  Sum_probs=39.4

Q ss_pred             CeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH---------------------HHHHhcCC-
Q 021440          137 KWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW---------------------KVCSFYNM-  193 (312)
Q Consensus       137 KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~---------------------~~~~~Y~~-  193 (312)
                      |++++.++ ..||+.|..-...+  ++...++-..++.++.++.|+.+..                     .++..|.+ 
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l--~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~  107 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQL--RDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  107 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHH--HHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CcEEEEecccccccchhhhhhhh--hhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhh
Confidence            45555544 67888886432111  1111223344677777777765322                     23445544 


Q ss_pred             ---C--CCCeEEEEeCCCCeeEEEe
Q 021440          194 ---D--SIPAVLVIDPITGQKICSW  213 (312)
Q Consensus       194 ---~--~~P~i~IIdprTGe~v~~~  213 (312)
                         .  .+|+..|||+ .|.....+
T Consensus       108 ~~~~g~~~r~tfvID~-~G~I~~~~  131 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDR-SGIIRFAE  131 (153)
T ss_dssp             ETTTTEECSEEEEECT-TSBEEEEE
T ss_pred             hhccCceeeeEEEECC-CCEEEEEE
Confidence               1  2467888996 58765444

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.91  E-value=0.83  Score=32.88  Aligned_cols=41  Identities=15%  Similarity=0.234  Sum_probs=36.6

Q ss_pred             hHHHHHhhhccccCCCHHHHHHHHHHc-CCCHHHHHHHHHhcCC
Q 021440            8 KESRISSFLEIAVGASGVTAIECLQAT-SWKLDEAILLFFAVNE   50 (312)
Q Consensus         8 ~~~~i~~F~~iTt~~~~~~A~~~Le~~-~wdLe~Av~lff~~~~   50 (312)
                      ..+.|.+.+++  |-+...|++-|..+ |.|+|.|++-.|++.+
T Consensus        29 d~~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~   70 (84)
T d1veka_          29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMD   70 (84)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            46799999999  99999999999886 5799999999999765

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.20  E-value=0.71  Score=30.64  Aligned_cols=42  Identities=2%  Similarity=0.092  Sum_probs=38.0

Q ss_pred             hhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHHHh
Q 021440            6 IDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLFFA   47 (312)
Q Consensus         6 ~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lff~   47 (312)
                      .++++.+.+|.++--.-|.++=+-.|++++||++.||+..+.
T Consensus        10 ~e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          10 NERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            457788999999988999999999999999999999998765

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=81.79  E-value=4.1  Score=30.42  Aligned_cols=105  Identities=15%  Similarity=0.037  Sum_probs=58.1

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEeecCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHHHHHHhcCC--CCCC
Q 021440          120 MFNGSFEKAKDAALAQDKWLLVNLQSTKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGWKVCSFYNM--DSIP  197 (312)
Q Consensus       120 ~~~gsf~~A~~~Ak~~~KwLLVniq~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~~~~~~Y~~--~~~P  197 (312)
                      +-.-+.+.+...=.. ++.+++.+.+... +...+.+.+   ..|.+-.+.+++|..++.+  +..+....+.+  ..+|
T Consensus         8 v~e~~~~n~~~~~~~-~~pl~~lf~~~~~-~~~~~~~~~---~~vA~~~~~ki~Fv~vd~~--~~~~~l~~~gl~~~~~P   80 (133)
T d2djka1           8 IGEIGPETYSDYMSA-GIPLAYIFAETAE-ERKELSDKL---KPIAEAQRGVINFGTIDAK--AFGAHAGNLNLKTDKFP   80 (133)
T ss_dssp             SEECCHHHHHHHHHT-TSCEEEEECSCSS-SHHHHHHHH---HHHHHSSTTTSEEEEECTT--TTGGGTTTTTCCSSSSS
T ss_pred             eeccChhhHHHHhcC-CCCEEEEEeCCch-HHHHHHHHH---HHHHHHhcCceEEEEEeHH--HhHHHHHHhcCCcccCC
Confidence            334444444444433 4455555554332 222221110   2222333456777766543  44466777777  6799


Q ss_pred             eEEEEeCCCCeeEEEe--cCCCChHHHHHHHHHHHhh
Q 021440          198 AVLVIDPITGQKICSW--CGMINPQPLGEMLLPFMDR  232 (312)
Q Consensus       198 ~i~IIdprTGe~v~~~--~G~~~~~~fl~~L~~fl~~  232 (312)
                      .++|++...+.. ..+  .+.++++.+.+-+.+|++.
T Consensus        81 ~~~i~~~~~~~~-~~~~~~~~i~~~~i~~Fi~d~~~G  116 (133)
T d2djka1          81 AFAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVAG  116 (133)
T ss_dssp             EEEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCCce-ecCCccccCCHHHHHHHHHHHHcC
Confidence            999999754443 333  4567888877777777765

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=81.33  E-value=1.2  Score=37.28  Aligned_cols=97  Identities=8%  Similarity=0.116  Sum_probs=64.3

Q ss_pred             cCCeEEEEee-cCCCcccchhhcccCCCHHHHHHhhccEEEEEeccCChhHH--------------------------HH
Q 021440          135 QDKWLLVNLQ-STKEFSSLMLNRDTWGNEAVSQIISVNFIFWQEYDDTSEGW--------------------------KV  187 (312)
Q Consensus       135 ~~KwLLVniq-~~~~f~c~~lnRDvw~~~~V~~~i~~nFIfwq~~~ds~EG~--------------------------~~  187 (312)
                      .+||+++++| ..+++-|..=-+.+  .+...+|-+.|..++.++.|+.+..                          ++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f--~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v  106 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAEL--GKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESREL  106 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHH--HHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHH
Confidence            6899999999 67788887643332  3445567777999999999875432                          45


Q ss_pred             HHhcCC--------C----CCCeEEEEeCCCCeeEEEe-cCC---CChHHHHHHHHH--HHhhCC
Q 021440          188 CSFYNM--------D----SIPAVLVIDPITGQKICSW-CGM---INPQPLGEMLLP--FMDRSP  234 (312)
Q Consensus       188 ~~~Y~~--------~----~~P~i~IIdprTGe~v~~~-~G~---~~~~~fl~~L~~--fl~~~~  234 (312)
                      +..|.+        .    ..-.+.|||| .|.....| ...   -..+++|..|..  +.+.+.
T Consensus       107 a~~ygv~~~~~~~~~~~~~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EiLr~l~aLQ~~~~~~  170 (219)
T d1xcca_         107 ANKLKIMDEQEKDITGLPLTCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTP  170 (219)
T ss_dssp             HHHHTCEEEEEECTTSCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHhCCcccccccCcccceeeeeeEEEcC-cceEEEEEEeCCCcccCHHHHHHHHHHHHHHHhCC
Confidence            566665        0    1247889998 47765443 221   367888888744  345554

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.60  E-value=1.8  Score=28.01  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=33.9

Q ss_pred             HHHHhhhccccCCCHHHHHHHHHHcC-CCHHHHHHHHHhcCC
Q 021440           10 SRISSFLEIAVGASGVTAIECLQATS-WKLDEAILLFFAVNE   50 (312)
Q Consensus        10 ~~i~~F~~iTt~~~~~~A~~~Le~~~-wdLe~Av~lff~~~~   50 (312)
                      +.|.+.+++  |=+...|++-|..++ .++|.|++=.|++.+
T Consensus         4 ~~v~~L~~M--GF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~~   43 (51)
T d2crna1           4 SLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHCN   43 (51)
T ss_dssp             SSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence            358888888  999999999999974 599999999999764

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.57  E-value=2.4  Score=25.75  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=34.0

Q ss_pred             chhhHHHHHhhhccccCCCHHHHHHHHHHcCCCHHHHHHHH
Q 021440            5 SIDKESRISSFLEIAVGASGVTAIECLQATSWKLDEAILLF   45 (312)
Q Consensus         5 s~~~~~~i~~F~~iTt~~~~~~A~~~Le~~~wdLe~Av~lf   45 (312)
                      |.+-..+|+..+++  |-+...-.--|..-.||+|.|-.+.
T Consensus         3 speyt~kidklca~--gf~knavi~alsskswdvetatell   41 (42)
T d3e46a1           3 SPEYTKKIENLCAA--GFDRNAVIVALSSKSWDVETATELL   41 (42)
T ss_dssp             CHHHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHc--cccccceeeeeccCccchhhHHHhh
Confidence            45667899999998  8888888999999999999998765