Citrus Sinensis ID: 021449

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMVR
cEEEccccEEEEccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHccccccEEEEEcccEEEEEEEEEccccEEEEccccEEEEEcccccccccccccccccccccccccEEcEEEEEEcccEEEEEEcEEEEcccccccccccccccccccccEEEEEEEccEEEEcEEEEccccEEEEEEcEEcEEEEEEEEcccccccccccEEEEEEEEEccccEEEEcccccccccccccccccEEEEEEEEEEEcc
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEccccEEEccEEEEccEEEEEEcccEEEEcccccccccccccccccccccccccccccEEEcccccEEEEEccccEEcccccHHHHHHHccccccccccEEEEEEcccEEEEEEEEEccccEEEcEEEcccEEEEEEEEEccccccccccEEEEEEEEEccccEEEEEccccccccEcccccccEEEEEEEEEcccc
MVEILSlgrfhlhqnrpdlrrWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRwgvasrpiprlrpaafnltdfggvgdgvtLNTEAFQRAVYAISKlgkkgggqlnvppgrwltapfnltshmtlflADDAEILAIEnekywplmpplpsygygrehhgprfgsfihgqnlkdvvitghngtingQGQAWWKKYRQKLLnntrgplvqiMWSSdilisnitlrdspfwtlhpydcknvtIRNAFISKIQLfdscedmviedcyisvgddaiaIKSGWdqygiaygrpsmNILIRNLVVRSMVR
mveilslgrfhlhqnrpdlRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIaygrpsmnilirnlvvrsmvr
MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMVR
***ILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVR****
*************Q***D*RRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMVR
MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMVR
*****SLGRF*LHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSM**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFLRWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSMVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
A7PZL3 491 Probable polygalacturonas no no 0.746 0.474 0.505 2e-65
Q9LW07 456 Probable polygalacturonas no no 0.599 0.410 0.283 5e-12
P35338 410 Exopolygalacturonase OS=Z N/A no 0.615 0.468 0.286 2e-10
P35339 410 Exopolygalacturonase OS=Z N/A no 0.615 0.468 0.282 1e-09
P26216 410 Exopolygalacturonase OS=Z N/A no 0.618 0.470 0.276 3e-09
Q7M1E7 514 Polygalacturonase OS=Cham N/A no 0.634 0.385 0.265 2e-07
Q949Z1 475 Polygalacturonase At1g481 no no 0.701 0.461 0.266 2e-06
P15922 602 Exo-poly-alpha-D-galactur N/A no 0.262 0.136 0.367 3e-06
Q9FY19 507 Polygalacturonase OS=Juni N/A no 0.621 0.382 0.241 6e-06
P43212 514 Polygalacturonase OS=Cryp N/A no 0.692 0.420 0.248 0.0001
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/251 (50%), Positives = 162/251 (64%), Gaps = 18/251 (7%)

Query: 72  LRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSH 131
            R  + +L DFGGVGDG TLNT+AFQ AV  +SK G +GG QL VP G+WLT  F+LTSH
Sbjct: 58  CRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSH 117

Query: 132 MTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGT 191
            TLFL  DA +LA ++   WP++ PLPSYG GR+    R+ S I G NL DV+ITG NGT
Sbjct: 118 FTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGT 177

Query: 192 INGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRN 251
           I+GQG  WW+++    L  TR  L+++M+S+DI ISN+TL +SP W +HP     V  RN
Sbjct: 178 IDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHP-----VYSRN 232

Query: 252 AFISKIQLF-------------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSM 298
             I  I +              DSC +  IEDCYI  GDD +A+KSGWD+YGIAYG P+ 
Sbjct: 233 ILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTK 292

Query: 299 NILIRNLVVRS 309
            ++IR L   S
Sbjct: 293 QLVIRRLTCIS 303

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function description
>sp|P15922|PEHX_ERWCH Exo-poly-alpha-D-galacturonosidase OS=Erwinia chrysanthemi GN=pehX PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
255550387 494 polygalacturonase, putative [Ricinus com 0.990 0.625 0.806 1e-147
225444665 493 PREDICTED: probable polygalacturonase [V 0.987 0.624 0.785 1e-147
147795580 509 hypothetical protein VITISV_024399 [Viti 0.990 0.607 0.741 1e-145
356547950 491 PREDICTED: probable polygalacturonase-li 0.980 0.623 0.788 1e-142
356565754 492 PREDICTED: probable polygalacturonase-li 0.980 0.621 0.772 1e-142
224142779 495 predicted protein [Populus trichocarpa] 0.983 0.620 0.771 1e-140
356565756 491 PREDICTED: probable polygalacturonase-li 0.964 0.613 0.768 1e-139
224068502 495 predicted protein [Populus trichocarpa] 0.945 0.595 0.778 1e-136
297844882 506 glycoside hydrolase family 28 protein [A 0.996 0.614 0.706 1e-131
449452594 493 PREDICTED: probable polygalacturonase-li 0.987 0.624 0.718 1e-129
>gi|255550387|ref|XP_002516244.1| polygalacturonase, putative [Ricinus communis] gi|223544730|gb|EEF46246.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/320 (80%), Positives = 274/320 (85%), Gaps = 11/320 (3%)

Query: 1   MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFSFL 60
           M+E  SLGR  LH  R +L+RWVP F SSHKTLFTVLW+AAFASVF+WQRN V  GF+  
Sbjct: 2   MLETASLGR--LHYQRLELKRWVPTFFSSHKTLFTVLWIAAFASVFVWQRNVVGDGFAVF 59

Query: 61  RWGVASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR 120
                 RP+P+LRP AFNLTDFGGVGDGVTLNTEAF+RAV AISKLGKKGGGQLNVPPGR
Sbjct: 60  FKASPMRPMPKLRPVAFNLTDFGGVGDGVTLNTEAFERAVLAISKLGKKGGGQLNVPPGR 119

Query: 121 WLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNL 180
           W+TAPFNLTSHMTLFLA+D+ IL IE+EKYWPLMPPLPSYGYGREH GPR+GS IHGQNL
Sbjct: 120 WVTAPFNLTSHMTLFLAEDSIILGIEDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNL 179

Query: 181 KDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLH 240
           KDVVITGHNGTINGQGQ WWKKYRQKLLN+TRGPLVQIMWSSDILI+NITLRDSPFWTLH
Sbjct: 180 KDVVITGHNGTINGQGQTWWKKYRQKLLNHTRGPLVQIMWSSDILITNITLRDSPFWTLH 239

Query: 241 PYDCKNVTIRNAFISKIQLF---------DSCEDMVIEDCYISVGDDAIAIKSGWDQYGI 291
           PYDCKNVTIRN  I    L          DSCEDMVIEDCYISVGDD IAIKSGWDQYGI
Sbjct: 240 PYDCKNVTIRNVTILAPVLEAPNTDGIDPDSCEDMVIEDCYISVGDDGIAIKSGWDQYGI 299

Query: 292 AYGRPSMNILIRNLVVRSMV 311
           AY RPS NILIRNLVVRSMV
Sbjct: 300 AYRRPSTNILIRNLVVRSMV 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444665|ref|XP_002277239.1| PREDICTED: probable polygalacturonase [Vitis vinifera] gi|297738532|emb|CBI27777.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147795580|emb|CAN69988.1| hypothetical protein VITISV_024399 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356547950|ref|XP_003542367.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356565754|ref|XP_003551102.1| PREDICTED: probable polygalacturonase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224142779|ref|XP_002324728.1| predicted protein [Populus trichocarpa] gi|222866162|gb|EEF03293.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356565756|ref|XP_003551103.1| PREDICTED: probable polygalacturonase-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224068502|ref|XP_002326133.1| predicted protein [Populus trichocarpa] gi|222833326|gb|EEE71803.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297844882|ref|XP_002890322.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297336164|gb|EFH66581.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449452594|ref|XP_004144044.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2202170 506 AT1G19170 [Arabidopsis thalian 0.996 0.614 0.709 2.7e-123
TAIR|locus:2078531 484 AT3G42950 [Arabidopsis thalian 0.919 0.592 0.716 6.9e-118
TAIR|locus:2128524 444 AT4G23820 [Arabidopsis thalian 0.759 0.533 0.536 2e-65
TAIR|locus:2101313 469 AT3G48950 [Arabidopsis thalian 0.727 0.484 0.533 7.6e-64
TAIR|locus:2119156 475 AT4G33440 [Arabidopsis thalian 0.730 0.48 0.533 1.8e-62
TAIR|locus:2098038 471 AT3G62110 [Arabidopsis thalian 0.746 0.494 0.502 1.3e-61
TAIR|locus:2152980 449 AT5G41870 [Arabidopsis thalian 0.746 0.518 0.512 1.5e-60
TAIR|locus:2082787 476 AT3G61490 [Arabidopsis thalian 0.746 0.489 0.493 8.1e-60
TAIR|locus:2061396 477 AT2G23900 [Arabidopsis thalian 0.887 0.580 0.452 1e-59
TAIR|locus:2117964 495 AT4G23500 [Arabidopsis thalian 0.746 0.470 0.510 8.4e-58
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
 Identities = 235/331 (70%), Positives = 266/331 (80%)

Query:     1 MVEILSLGRFHLHQNRPDLRRWVPAFLSSHKTLFTVLWLAAFASVFIWQRNAVVGGFS-- 58
             MVE L   RF  H  R D +R + + L+SHKTLFT LW+ AF SVF+WQR A + G S  
Sbjct:     1 MVENLFPSRFQFHLQRLDPKRRLTSLLASHKTLFTFLWITAFGSVFLWQRTAYIEGGSGT 60

Query:    59 ------FLRWGVAS--RPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLG-KK 109
                   F  +G     +PIPRLRP  F+L DFGGVGDG TLNTEAF+RAV +ISKLG   
Sbjct:    61 GPVGGKFTIFGKIKPIQPIPRLRPVVFDLKDFGGVGDGFTLNTEAFERAVISISKLGGSS 120

Query:   110 GGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGP 169
             GGGQLNVPPGRWLTAPFNLTSHMTLFLA+D+EIL +E+EKYWPLMPPLPSYGYGRE  GP
Sbjct:   121 GGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDEKYWPLMPPLPSYGYGRERPGP 180

Query:   170 RFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLLNNTRGPLVQIMWSSDILISNI 229
             R+GS IHGQNLKD+VITGHNGTINGQGQ+WWKK++++LLN TRGPLVQIMWSSDI+I+NI
Sbjct:   181 RYGSLIHGQNLKDIVITGHNGTINGQGQSWWKKHQRRLLNYTRGPLVQIMWSSDIVIANI 240

Query:   230 TLRDSPFWTLHPYDCKNVTIRNAFI-SKIQLF--------DSCEDMVIEDCYISVGDDAI 280
             T+RDSPFWTLHPYDCKNVTIRN  I + +           DSCEDMVIEDCYIS GDDAI
Sbjct:   241 TMRDSPFWTLHPYDCKNVTIRNVTILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAI 300

Query:   281 AIKSGWDQYGIAYGRPSMNILIRNLVVRSMV 311
             AIKSGWDQ+GIAYGRPS NILIRNLVVRS++
Sbjct:   301 AIKSGWDQFGIAYGRPSTNILIRNLVVRSVI 331
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016404001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (493 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
COG5434 542 COG5434, PGU1, Endopygalactorunase [Cell envelope 6e-43
PLN03003 456 PLN03003, PLN03003, Probable polygalacturonase At3 5e-15
pfam00295 325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-12
PLN02793 443 PLN02793, PLN02793, Probable polygalacturonase 1e-06
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 2e-06
PLN03010 409 PLN03010, PLN03010, polygalacturonase 6e-06
PLN02218 431 PLN02218, PLN02218, polygalacturonase ADPG 7e-06
PLN02188 404 PLN02188, PLN02188, polygalacturonase/glycoside hy 3e-04
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  154 bits (391), Expect = 6e-43
 Identities = 84/279 (30%), Positives = 117/279 (41%), Gaps = 40/279 (14%)

Query: 65  ASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTA 124
           A          AF+++D G VGDG T NT A Q A+ A +  G   GG + +P G +L+ 
Sbjct: 71  AINIKTAATDTAFSVSDDGAVGDGATDNTAAIQAAIDACASAG---GGTVLLPAGTYLSG 127

Query: 125 PFNLTSHMTLFLADDAEILAIENEKYWPL-----------------MPPLPSYGYGREHH 167
           P  L S++TL LA+ A +LA  N K +P                         G G    
Sbjct: 128 PLFLKSNVTLHLAEGATLLASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADG 187

Query: 168 GPRFGSFIH-GQNLKDVVITGHNGTINGQGQ----AWWKKYRQKLL----NNTRGPLVQI 218
                  +  G +     I G   TI+G G      W+               R   V +
Sbjct: 188 ---KADLLIAGNSSNRKEIWGKG-TIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVL 243

Query: 219 MWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQL-------FDSCEDMVIEDC 271
               ++L+  + +++SP WT+HP DC N+T RN  I   +          SC +++IE C
Sbjct: 244 KGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGC 303

Query: 272 YISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRSM 310
               GDD IAIKSG    G     PS NI+IRN    S 
Sbjct: 304 RFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG 342

Length = 542
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
PLN02793 443 Probable polygalacturonase 100.0
PLN02218 431 polygalacturonase ADPG 100.0
PLN02155 394 polygalacturonase 100.0
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03010 409 polygalacturonase 100.0
PLN03003 456 Probable polygalacturonase At3g15720 100.0
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.97
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.93
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.84
PF03718 582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.41
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.34
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 98.9
PLN02793 443 Probable polygalacturonase 98.89
PLN02218431 polygalacturonase ADPG 98.77
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 98.73
PLN03003 456 Probable polygalacturonase At3g15720 98.71
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.69
PLN03010409 polygalacturonase 98.68
PLN02155394 polygalacturonase 98.62
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 98.58
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.29
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.13
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.97
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.94
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 97.86
smart00656190 Amb_all Amb_all domain. 97.77
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.69
PLN02480343 Probable pectinesterase 97.61
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.61
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.57
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.49
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.37
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.3
PLN02304379 probable pectinesterase 97.17
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 96.99
PLN02682369 pectinesterase family protein 96.98
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.97
PLN02773 317 pectinesterase 96.96
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 96.94
PLN02497331 probable pectinesterase 96.89
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 96.88
smart00656190 Amb_all Amb_all domain. 96.87
PLN02432293 putative pectinesterase 96.83
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 96.83
PLN02671359 pectinesterase 96.82
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 96.82
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.81
PRK10531 422 acyl-CoA thioesterase; Provisional 96.8
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.79
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 96.77
PLN02665366 pectinesterase family protein 96.77
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 96.76
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 96.76
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 96.72
PLN02916 502 pectinesterase family protein 96.7
PLN02634359 probable pectinesterase 96.65
PLN02301 548 pectinesterase/pectinesterase inhibitor 96.64
PLN02176340 putative pectinesterase 96.64
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 96.63
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.63
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 96.62
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 96.57
PLN02313 587 Pectinesterase/pectinesterase inhibitor 96.52
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 96.46
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 96.44
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 96.43
PLN02314 586 pectinesterase 96.41
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 96.4
PLN02197 588 pectinesterase 96.36
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.29
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 95.81
PF03718 582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 94.37
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 92.08
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 91.9
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 90.03
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 87.79
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 86.02
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 83.04
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-46  Score=366.17  Aligned_cols=218  Identities=23%  Similarity=0.427  Sum_probs=188.3

Q ss_pred             CCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCC-ceeeccccc----cccceEEecCCceEEEeec
Q 021449           73 RPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPG-RWLTAPFNL----TSHMTLFLADDAEILAIEN  147 (312)
Q Consensus        73 ~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~G-tYl~~~i~L----~S~~tL~l~~ga~i~~~~d  147 (312)
                      .++++||+||||+|||.+|||+|||+||+++|  ++.+|++|+||+| +|++++|.|    +|+++|+++  |+|+++.+
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC--~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d  124 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC--SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD  124 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHh--ccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence            34799999999999999999999999999532  6678999999999 599999999    899999996  89999998


Q ss_pred             CCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCchhhhHhhhc---ccCCCCCceEEEeccccE
Q 021449          148 EKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQK---LLNNTRGPLVQIMWSSDI  224 (312)
Q Consensus       148 ~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~~ww~~~~~~---~~~~~r~~~i~~~~~~nv  224 (312)
                      +.+|+..               ....||++.+++||+|+| .|+|||+|+.||+.....   .....||+++.|.+|+|+
T Consensus       125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG-~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv  188 (443)
T PLN02793        125 PDVWKGL---------------NPRKWLYFHGVNHLTVEG-GGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL  188 (443)
T ss_pred             hHHccCC---------------CCceEEEEecCceEEEEe-ceEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence            8888631               113589999999999999 799999999999753221   112358999999999999


Q ss_pred             EEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccCCCc--------
Q 021449          225 LISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSGWDQ--------  288 (312)
Q Consensus       225 ~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg~~~--------  288 (312)
                      +|+|++++|+|+|++++..|+||+|+|++|.++.        |+++|+||+|+||+|++|||||+||++...        
T Consensus       189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c  268 (443)
T PLN02793        189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIAC  268 (443)
T ss_pred             EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEE
Confidence            9999999999999999999999999999999865        688999999999999999999999987543        


Q ss_pred             ---CCccCCC--------CeecEEEEeEEEeec
Q 021449          289 ---YGIAYGR--------PSMNILIRNLVVRSM  310 (312)
Q Consensus       289 ---~g~~~g~--------~~~nI~I~n~~v~~~  310 (312)
                         +|++.|.        .++||+|+||++.++
T Consensus       269 ~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t  301 (443)
T PLN02793        269 GPGHGISIGSLGKSNSWSEVRDITVDGAFLSNT  301 (443)
T ss_pred             eCCccEEEecccCcCCCCcEEEEEEEccEEeCC
Confidence               4655553        589999999998865

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3jur_A 448 The Crystal Structure Of A Hyperthermoactive Exopol 1e-24
2uve_A 608 Structure Of Yersinia Enterocolitica Family 28 Exop 8e-08
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 53/281 (18%)
Query: 70  PRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT 129
           P++     NL DFG  GDG T  +E+F+RA   I +L K+GGG+L VP G +LT P +L 
Sbjct: 21  PQIPDREVNLLDFGARGDGRTDCSESFKRA---IEELSKQGGGRLIVPEGVFLTGPIHLK 77
Query: 130 SHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHN 189
           S++ L +    + +  + E+Y P++  L  +  G E +   +   ++  + ++V ITG +
Sbjct: 78  SNIELHVKGTIKFIP-DPERYLPVV--LTRF-EGIELYN--YSPLVYALDCENVAITG-S 130
Query: 190 GTINGQG--QAWW---------------------KKYRQKLLNNT-------------RG 213
           G ++G    + WW                     KK ++     T             R 
Sbjct: 131 GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRP 190
Query: 214 PLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQLF------DSCEDMV 267
             VQ     ++L+  + + +SP W +HP   +NV IRN  IS           +SC+ M+
Sbjct: 191 SFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYML 250
Query: 268 IEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIR-NLVV 307
           IE C    GDD++ IKSG D  G   G PS  IL+R NLV+
Sbjct: 251 IEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVI 291
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-81
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-79
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 7e-74
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 3e-46
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 6e-43
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-42
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-41
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 5e-38
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 8e-30
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-29
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-27
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 4e-27
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 1e-26
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 8e-26
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 2e-25
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 7e-24
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 7e-13
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 7e-10
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 1e-08
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  253 bits (647), Expect = 1e-81
 Identities = 84/283 (29%), Positives = 130/283 (45%), Gaps = 54/283 (19%)

Query: 70  PRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLT 129
           P++     NL DFG  GDG T  +E+F+RA   I +L K+GGG+L VP G +LT P +L 
Sbjct: 21  PQIPDREVNLLDFGARGDGRTDCSESFKRA---IEELSKQGGGRLIVPEGVFLTGPIHLK 77

Query: 130 SHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHN 189
           S++ L +     I  I + + +   P + +   G E +   +   ++  + ++V ITG +
Sbjct: 78  SNIELHV--KGTIKFIPDPERYL--PVVLTRFEGIELY--NYSPLVYALDCENVAITG-S 130

Query: 190 GTINGQGQA--WWKKYRQK----------------------------------LLNNTRG 213
           G ++G      WW    +K                                    +  R 
Sbjct: 131 GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRP 190

Query: 214 PLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISK-------IQLFDSCEDM 266
             VQ     ++L+  + + +SP W +HP   +NV IRN  IS        I   +SC+ M
Sbjct: 191 SFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDP-ESCKYM 249

Query: 267 VIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS 309
           +IE C    GDD++ IKSG D  G   G PS  IL+R+ +V S
Sbjct: 250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVIS 292
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 100.0
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 99.98
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.98
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.98
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.97
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.97
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 99.97
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 99.96
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 99.96
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.93
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.81
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.43
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.19
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 99.17
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.12
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.12
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.11
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 99.03
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.02
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.93
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 98.92
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.9
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.83
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.66
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.58
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.47
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.27
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 98.25
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.21
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 98.18
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.1
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.99
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 97.98
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 97.98
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 97.97
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.87
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 97.86
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.77
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 97.74
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.72
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.66
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.62
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.62
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 97.56
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 97.55
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.52
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 97.5
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 97.46
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 97.46
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.11
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.05
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.9
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.88
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.84
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 96.76
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.74
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 96.56
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 96.3
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.09
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.48
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 95.38
2inu_A410 Insulin fructotransferase; right-handed parallel b 94.66
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 93.5
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 90.93
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 89.14
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 87.59
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 83.9
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 80.63
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.1e-49  Score=386.95  Aligned_cols=234  Identities=35%  Similarity=0.586  Sum_probs=202.8

Q ss_pred             cCCCCCCCCCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCceeeccccccccceEEecCCceEEE
Q 021449           65 ASRPIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILA  144 (312)
Q Consensus        65 ~~~~~~~~~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~GtYl~~~i~L~S~~tL~l~~ga~i~~  144 (312)
                      +....|.+++++++|+||||+|||.+|||+|||+||++|   ++.+|++|+||+|+|++++|.|+|+++|+++  |+|++
T Consensus        16 ~~~~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c---~~~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~   90 (448)
T 3jur_A           16 NHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEEL---SKQGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKF   90 (448)
T ss_dssp             HHCCCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHH---HHHTCEEEEECSSEEEESCEECCTTEEEEES--SEEEE
T ss_pred             hhccCCCCCCcEEEEEecccCCCCCeecHHHHHHHHHhh---hhcCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEe
Confidence            344466778899999999999999999999999999998   4568999999999999999999999999998  99999


Q ss_pred             eecCCCC-CCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCC--chhhhHhhhc---------------
Q 021449          145 IENEKYW-PLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQG--QAWWKKYRQK---------------  206 (312)
Q Consensus       145 ~~d~~~~-~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G--~~ww~~~~~~---------------  206 (312)
                      +++.++| |...   ...+|.+.  ..+.+||++.+++||+|+| .|+|||||  +.||+....+               
T Consensus        91 s~d~~~y~p~~~---~~~~G~~~--~~~~~lI~~~~~~ni~ItG-~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~  164 (448)
T 3jur_A           91 IPDPERYLPVVL---TRFEGIEL--YNYSPLVYALDCENVAITG-SGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDV  164 (448)
T ss_dssp             CCCGGGGCSCEE---EEETTEEE--EESCCSEEEESCEEEEEES-SCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHH
T ss_pred             cCCHHHhCcccc---cccccccc--cCccceEEEeCcEeeEEEE-eEEEECCCCchhhhhhcccccccccccccccccch
Confidence            9999888 5321   11123322  2346899999999999999 69999999  8899853210               


Q ss_pred             -------------------ccCCCCCceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC------CCC
Q 021449          207 -------------------LLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ------LFD  261 (312)
Q Consensus       207 -------------------~~~~~r~~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~------d~~  261 (312)
                                         .....||++|.|.+|+|++|+|++++|+|+|++++..|+||+|+|++|.++.      |++
T Consensus       165 ~~l~~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~~~NtDGidi~  244 (448)
T 3jur_A          165 KKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPE  244 (448)
T ss_dssp             HHHHHHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEECSTTCCSBCCB
T ss_pred             hhhhhhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeeccCCCcccccc
Confidence                               1124789999999999999999999999999999999999999999999863      788


Q ss_pred             CcccEEEEeeEEecCCceEEeccCCCcCCccCCCCeecEEEEeEEEee
Q 021449          262 SCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILIRNLVVRS  309 (312)
Q Consensus       262 ~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~g~~~~nI~I~n~~v~~  309 (312)
                      +|+||+|+||+|++|||||+||+|++.+|..++.|++||+|+||++++
T Consensus       245 ~s~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~  292 (448)
T 3jur_A          245 SCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVIS  292 (448)
T ss_dssp             SCEEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEEC
T ss_pred             CCcCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEec
Confidence            999999999999999999999999988888888999999999999943
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 312
d1bhea_ 376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 6e-45
d1rmga_ 422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 1e-32
d1ogmx2 373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 3e-31
d1czfa_ 335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-27
d1ia5a_ 339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-27
d1k5ca_ 333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 1e-24
d1hg8a_ 349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-24
d1nhca_ 336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-19
d1o88a_ 353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 9e-14
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  154 bits (391), Expect = 6e-45
 Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 37/242 (15%)

Query: 85  VGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR---WLTAPFNLTSHMTLFLADDAE 141
           +    +  T   Q+A+    +     G  + +  G    +L+ P +L S ++L +     
Sbjct: 18  LKADSSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVT 72

Query: 142 ILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWK 201
           + A+ N K +      PS     + +G    +FI   +  +  I G  GTI+GQG    +
Sbjct: 73  LRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIYG-PGTIDGQGGVKLQ 128

Query: 202 -----------KYRQKLLNNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIR 250
                        + K L      L+QI  S +  + N++L +SP + +   D    T  
Sbjct: 129 DKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAW 188

Query: 251 NAFIS--------KIQLFDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNILI 302
              I               S +++ I    I+ GDD +AIK+   +        + NI I
Sbjct: 189 KTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNISI 242

Query: 303 RN 304
            +
Sbjct: 243 LH 244
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.98
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.98
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 99.97
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 99.97
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 99.95
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.4
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.1
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 98.97
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.96
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.88
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.87
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 98.78
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.56
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 98.39
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.29
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.08
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.94
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.92
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.91
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.76
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.52
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.5
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.43
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.35
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.17
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.76
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.74
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.68
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.45
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.71
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.64
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.43
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 87.52
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 87.27
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=100.00  E-value=3.3e-41  Score=320.89  Aligned_cols=221  Identities=24%  Similarity=0.341  Sum_probs=180.1

Q ss_pred             CCCCCCCceEEeeeccccCCCccchHHHHHHHHHHHHhhccCCCcEEEeCCCc---eeeccccccccceEEecCCceEEE
Q 021449           68 PIPRLRPAAFNLTDFGGVGDGVTLNTEAFQRAVYAISKLGKKGGGQLNVPPGR---WLTAPFNLTSHMTLFLADDAEILA  144 (312)
Q Consensus        68 ~~~~~~~~~~~v~dfGA~gDg~tddT~Aiq~AI~a~~~~~~~gGgtv~iP~Gt---Yl~~~i~L~S~~tL~l~~ga~i~~  144 (312)
                      ..|.++.....+.+      +.+|||+|||+||++|   +  +|++|+||||+   |++++|.|+|+++|+|++||+|++
T Consensus         7 ~~~~~~~~~~~~~~------~~~~~T~aIq~AIdac---~--~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~   75 (376)
T d1bhea_           7 SEPKTPSSCTTLKA------DSSTATSTIQKALNNC---D--QGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRA   75 (376)
T ss_dssp             CCCCCCCEEEEEEC------CSSBCHHHHHHHHTTC---C--TTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEE
T ss_pred             CCCCCCCceEeECC------CCChhHHHHHHHHHHC---C--CCCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEE
Confidence            34555555555553      3579999999999987   3  58899999997   889999999999999999999999


Q ss_pred             eecCCCCCCCCCCCCCCCCCcCCCCCccccEEEeceeeEEEeccceEEecCCc--------hhhhHhh---hcccCCCCC
Q 021449          145 IENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQ--------AWWKKYR---QKLLNNTRG  213 (312)
Q Consensus       145 ~~d~~~~~~~~~~~~~~~G~~~~~~~~~~lI~~~~~~nI~I~G~~G~IdG~G~--------~ww~~~~---~~~~~~~r~  213 (312)
                      +.+.++|+..+..   ..+.+..+..+.++|.+.+++||+|+| .|+|||||.        .||....   .......||
T Consensus        76 s~d~~~y~~~~~~---~~~~~~~~~~~~~~i~~~~~~Ni~ItG-~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP  151 (376)
T d1bhea_          76 VNNAKSFENAPSS---CGVVDKNGKGCDAFITAVSTTNSGIYG-PGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTP  151 (376)
T ss_dssp             CSCSGGGBSSTTC---SSCEESCSCCBCCSEEEESCBSCEEEC-SSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCC
T ss_pred             cCCHHHcccccce---eeeEeccCcccceeEEecCcceEEEEe-CcEEecccceeecCCccchhccccccccccCCCCCC
Confidence            9999999754321   122222334446899999999999999 799999996        4665432   223346799


Q ss_pred             ceEEEeccccEEEEeeEEEcCCCCeeeecccccEEEEeEEEeeCC--------CCCCcccEEEEeeEEecCCceEEeccC
Q 021449          214 PLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNAFISKIQ--------LFDSCEDMVIEDCYISVGDDAIAIKSG  285 (312)
Q Consensus       214 ~~i~~~~~~nv~I~nvti~ns~~~~i~i~~~~nV~I~n~~I~~~~--------d~~~s~nV~I~n~~i~~gDD~Iaiksg  285 (312)
                      ++|.|.+|+|++|+|++++|+|+|++++..|++++|+|++|.++.        |+++|+||+|+||+|+++||||++|++
T Consensus       152 ~~i~~~~~~nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~  231 (376)
T d1bhea_         152 RLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAY  231 (376)
T ss_dssp             CSEEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEEC
T ss_pred             eEEEEEecccEEEEeeEEecCCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCCCceeeecc
Confidence            999999999999999999999999999999999999999999864        567999999999999999999999997


Q ss_pred             CCcCCccCCCCeecEEEEeEEEee
Q 021449          286 WDQYGIAYGRPSMNILIRNLVVRS  309 (312)
Q Consensus       286 ~~~~g~~~g~~~~nI~I~n~~v~~  309 (312)
                      ...      .+++||+|+||+++.
T Consensus       232 ~~~------~~~~ni~i~n~~~~~  249 (376)
T d1bhea_         232 KGR------AETRNISILHNDFGT  249 (376)
T ss_dssp             TTS------CCEEEEEEEEEEECS
T ss_pred             cCC------CCcceEEEEeeEEec
Confidence            643      357777777777654
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure