Citrus Sinensis ID: 021465

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MYERQQMSGRRIQPHYEGRVVPAPGMLRHGPFPGSPAGHRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTVGAVWGGSYDP
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
myerqqmsgrriqphyegrvvpapgmlrhgpfpgspaghrlleplplleDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEyekglnidNVEQLQAMEKNLVGMAREMEKLHAEVVNAemrghapnpysrtytnpipsyppsvqgggvyvdgysqpllqmgvvqtgegmipygsgngvaaasgvgmpavpastvgavwggsydp
Flexible Loop (DISEMBL)
myerqqmsgrriqphyeGRVVPAPGMLRHGPFPGSPAGHRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHirnihtesdsHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATfeyekglnidnvEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPAStvgavwggsydp
Low Complexity Region (SEG)
MYERQQMSGRRIQPHYEGRVVPAPGMLRHGPFPGSPAGHRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYgsgngvaaasgvgMPAVPASTVGAVWGGSYDP
Disordered region (IsUnstruct)
****************************************LLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA******************************************************************LRATFEYEKGLNIDNVEQLQAM**NLV****************************************VQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTVGAVWG*****
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********RIQPHYEGRVVPAPGMLRHGPFPGSPAGHRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTVGAVWGGSYDP
Disordered Region (DISPRO)
***************************************RLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTVGAVWG*SYDP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYERQQMSGRRIQPHYEGRVVPAPGMLRHGPFPGSPAGHRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKNxxxxxxxxxxxxxxxxxxxxxFEYEKGLNIDNVEQxxxxxxxxxxxxxxxxxxxxxxxxxxxxGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTVGAVWGGSYDP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
225451283	304	PREDICTED: uncharacterized protein LOC10	0.916	0.940	0.590	1e-90
224088368	297	predicted protein [Populus trichocarpa]	0.923	0.969	0.577	3e-88
255574613	312	conserved hypothetical protein [Ricinus	0.948	0.948	0.552	1e-81
388512507	290	unknown [Lotus japonicus]	0.820	0.882	0.526	2e-69
148910484	317	unknown [Picea sitchensis]	0.862	0.848	0.443	2e-53
298204888	232	unnamed protein product [Vitis vinifera]	0.573	0.771	0.588	1e-50
388521805	205	unknown [Lotus japonicus]	0.570	0.868	0.562	2e-49
357164182	420	PREDICTED: uncharacterized protein LOC10	0.881	0.654	0.376	3e-47
125548727	406	hypothetical protein OsI_16325 [Oryza sa	0.858	0.660	0.373	1e-46
116309908	406	OSIGBa0116M22.10 [Oryza sativa Indica Gr	0.858	0.660	0.373	1e-46

>gi|225451283|ref|XP_002277975.1| PREDICTED: uncharacterized protein LOC100246931 [Vitis vinifera] gi|147833080|emb|CAN62085.1| hypothetical protein VITISV_035122 [Vitis vinifera]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/305 (59%), Positives = 218/305 (71%), Gaps = 19/305 (6%)

Query: 13  QPHYEGRVVPAPGMLRHGPFPGS--PAGHRLLEPLP---LLEDKIAVQAAEIERLARDNH 67
           QP +EGR   APGM+RHGPFPGS    G R LE  P   + E+K+  Q AEIERLA DNH
Sbjct: 8   QPSFEGRAAQAPGMMRHGPFPGSGHTVGLRSLETAPHPDIAENKMLAQVAEIERLAGDNH 67

Query: 68  RLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKK 127
           RLAA+H  +R++L AAQ EI RIKA IR+I TESD  IRVL+++IAKME D +AGE +KK
Sbjct: 68  RLAATHGALRQELVAAQHEISRIKAQIRSIETESDIQIRVLMERIAKMEGDIRAGEHVKK 127

Query: 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187
           +LQQAHIEAQSL  ARQELT+++QQA++ L KA  +VK LP+LHAELDS+ QEH+RLR+T
Sbjct: 128 ELQQAHIEAQSLVTARQELTTQVQQATQELQKANADVKRLPELHAELDSMGQEHQRLRST 187

Query: 188 FEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSY 247
           FEYEKGLN+D V ++Q MEKNLV MARE+EKL AEV+NAE R HAPNPYS +Y  P    
Sbjct: 188 FEYEKGLNVDQVREMQEMEKNLVVMAREVEKLRAEVLNAEKRAHAPNPYSGSYPEPSYPP 247

Query: 248 PPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTVGAVWG 307
               QG G Y+D Y +P  QM       GMIPYGS             A+P ++ GA WG
Sbjct: 248 --PTQGSGAYIDSYGRPHAQMIAGTPSAGMIPYGS------------VAIPPASSGAAWG 293

Query: 308 GSYDP 312
           G+YDP
Sbjct: 294 GAYDP 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088368|ref|XP_002308428.1| predicted protein [Populus trichocarpa] gi|222854404|gb|EEE91951.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/310 (57%), Positives = 219/310 (70%), Gaps = 22/310 (7%)

Query: 7   MSGRR-IQPHYEGRVVPAPGMLRHGPFPGSPAGHRLLEPLP---LLEDKIAVQAAEIERL 62
           MS RR I+P  EGRV+ APGM+RHGPF   PAGH   EPL    LLE + A QAA+IE+L
Sbjct: 1   MSARRHIRPTLEGRVIQAPGMMRHGPF---PAGHHTSEPLSRSDLLEHRFAAQAADIEQL 57

Query: 63  ARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAG 122
           A DN+RL  SH+ +REDLAAAQQE+ R+KAHIR+I TESD  IRVLLDKIAKME D +AG
Sbjct: 58  AGDNNRLVTSHMALREDLAAAQQEVQRLKAHIRSIQTESDIQIRVLLDKIAKMEKDIRAG 117

Query: 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHR 182
           E +KKDL+QAH+EAQ+L + RQEL ++IQQAS  L K   +VK++PDLHAEL++ R E +
Sbjct: 118 ENVKKDLKQAHVEAQNLVKERQELATQIQQASHELQKIHTDVKSIPDLHAELENSRHELK 177

Query: 183 RLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTN 242
           RLRATFEYEKGLNI+ VEQ++AME+NL+GMAREME L  +V+NAE R  APN Y   Y N
Sbjct: 178 RLRATFEYEKGLNIEKVEQMRAMEQNLIGMAREMENLRVDVLNAETRARAPNQYIGGYAN 237

Query: 243 PIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTV 302
           P               DGY +P + MGV   GEG+IPY S N V +  G G  A+  +  
Sbjct: 238 P---------------DGYGRPFVHMGVGPAGEGIIPYNSSNSVVSNVGFGGAAMSTTGG 282

Query: 303 GAVWGGSYDP 312
            A W G +DP
Sbjct: 283 VAQWVGPFDP 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574613|ref|XP_002528217.1| conserved hypothetical protein [Ricinus communis] gi|223532378|gb|EEF34174.1| conserved hypothetical protein [Ricinus communis]

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/302 (55%), Positives = 213/302 (70%), Gaps = 6/302 (1%)

Query: 14  PHYEGRVVPAPGMLRHGPFPGSPAGHRLLEPLP---LLEDKIAVQAAEIERLARDNHRLA 70
           P  EGR +  P  +RHG FP S   HR L+ LP   LLE+KIA QAAEIE+LA DNHRLA
Sbjct: 9   PGLEGRYLRRPESIRHGLFPPS---HRQLDRLPPSDLLENKIAAQAAEIEQLAGDNHRLA 65

Query: 71  ASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQ 130
           A+H+ +R+DL  AQQE+ R KAHIR+I TESD  +R+LLDKIAKMEA+ + G+ +KK+L+
Sbjct: 66  ATHMALRQDLVDAQQEVKRRKAHIRSIQTESDIQMRMLLDKIAKMEAEIRLGDNVKKELR 125

Query: 131 QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY 190
           QAH+EAQSL +A Q+LT++IQ+AS+ L K R +V  +PDL AEL++LR E++RLRA FEY
Sbjct: 126 QAHMEAQSLVKAGQDLTTQIQEASKELQKVRTDVSIIPDLQAELENLRHEYKRLRAMFEY 185

Query: 191 EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPS 250
           EKGLNI+ VE+LQAME+NL+ MARE+EKLHA V+NAE + HAPN Y   Y    PS    
Sbjct: 186 EKGLNIEKVERLQAMEQNLIRMARELEKLHAGVLNAEKKAHAPNLYGGGYVTRNPSCSFP 245

Query: 251 VQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPAVPASTVGAVWGGSY 310
           +Q G   VD Y + L+   V     G IPY +GN  A   G+G  AV ++   A  GGS 
Sbjct: 246 IQRGAASVDSYGRHLVHTRVGPAVNGTIPYDNGNNAAIICGIGGSAVSSAGGVAPLGGSC 305

Query: 311 DP 312
           DP
Sbjct: 306 DP 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512507|gb|AFK44315.1| unknown [Lotus japonicus]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/279 (52%), Positives = 190/279 (68%), Gaps = 23/279 (8%)

Query: 26  MLRHGPFPG-----------SPAGHRLLEPLP---LLEDKIAVQAAEIERLARDNHRLAA 71
           M+RHG  PG           + A HR LE LP   LLEDK+A Q  EIERLA DN RLA 
Sbjct: 1   MMRHGQLPGLSSSSAVAAAAAAASHRSLESLPQSHLLEDKVADQEEEIERLAGDNRRLAK 60

Query: 72  SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQ 131
           +H+ +R+DL +A Q++ ++K+HIR+I TESD  IRVLLDKIAKME D +AG+ ++KDLQQ
Sbjct: 61  THVALRDDLVSAAQDVRKLKSHIRSIQTESDIQIRVLLDKIAKMEVDIRAGDSVRKDLQQ 120

Query: 132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYE 191
           A IEAQSLA +RQEL+++IQ+A++ + KA  +VK+LPDL AELD L QE +RLR+TFEYE
Sbjct: 121 ALIEAQSLAASRQELSAEIQRAAQEVKKAISDVKSLPDLQAELDDLVQERQRLRSTFEYE 180

Query: 192 KGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSV 251
           K  NI+ V+Q++  EKNL+ MARE+E L AE++NAE R +APN +    T P       V
Sbjct: 181 KSKNIELVDQMKIKEKNLIAMAREVEVLQAEILNAEKRANAPNLFR--ATTP-------V 231

Query: 252 QGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAAS 290
            G G + D Y +   QM   Q GE M P    NGVAA +
Sbjct: 232 DGSGSFSDPYGRAHGQMATAQVGETMAPVVDSNGVAAIT 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910484|gb|ABR18317.1| unknown [Picea sitchensis]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/282 (44%), Positives = 175/282 (62%), Gaps = 13/282 (4%)

Query: 7   MSGRRIQPHYEGRVVPAPGM--LRHGPFPGSPAGHRLLEPLP---LLEDKIAVQAAEIER 61
           M+GR   P    R +P PGM    +G   G PAGHR L+ LP   +LE K+A Q AE++R
Sbjct: 1   MAGRDRMPPPFARHLPGPGMGPEMYGQVMGPPAGHRPLDLLPPPEVLEHKLATQHAEMQR 60

Query: 62  LARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA 121
           LA +N RLAA+H  +R+DL  +Q E+ R+++HI  +  + +  IR  LD+IA MEAD ++
Sbjct: 61  LASENQRLAATHGALRQDLVMSQHELERLRSHIAALQNDKEQQIRSSLDQIANMEADLRS 120

Query: 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEH 181
            E +K DLQQA  +AQ+    RQ+LT ++QQ ++ L +A  EV+ +P +H E+D LRQE 
Sbjct: 121 SESIKADLQQARSDAQNFLSVRQDLTVQVQQLTQDLQRAHAEVQQIPAMHTEIDGLRQEL 180

Query: 182 RRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA-EMRGHAPNPYSRTY 240
           +R R  FEYEK  + +  EQ+Q MEKNLV +ARE+EKL +E+ +A + RG A  PY   Y
Sbjct: 181 QRGRDAFEYEKAASSEQAEQMQGMEKNLVSLAREVEKLRSELASAVDKRGRA-APYGSAY 239

Query: 241 TNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGS 282
           + P   YPP   G  VY DGY  P +  G     E + PY +
Sbjct: 240 SGPDAPYPPV--GQNVYGDGYGMPQMPAGP----EAVAPYAA 275

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204888|emb|CBI34195.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 136/192 (70%), Gaps = 13/192 (6%)

Query: 115 MEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAEL 174
           ME D +AGE +KK+LQQAHIEAQSL  ARQELT+++QQA++ L KA  +VK LP+LHAEL
Sbjct: 1   MEGDIRAGEHVKKELQQAHIEAQSLVTARQELTTQVQQATQELQKANADVKRLPELHAEL 60

Query: 175 DSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPN 234
           DS+ QEH+RLR+TFEYEKGLN+D V ++Q MEKNLV MARE+EKL AEV+NAE R HAPN
Sbjct: 61  DSMGQEHQRLRSTFEYEKGLNVDQVREMQEMEKNLVVMAREVEKLRAEVLNAEKRAHAPN 120

Query: 235 PYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGM 294
           PYS +Y  P     P  QG G Y+D Y +P  QM       GMIPYGS         V +
Sbjct: 121 PYSGSYPEPSYP--PPTQGSGAYIDSYGRPHAQMIAGTPSAGMIPYGS---------VAI 169

Query: 295 PAVPASTVGAVW 306
           P  PAS+V   W
Sbjct: 170 P--PASSVKHTW 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521805|gb|AFK48964.1| unknown [Lotus japonicus]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/192 (56%), Positives = 139/192 (72%), Gaps = 14/192 (7%)

Query: 16  YEGRVVPAPGMLRHGPFPG-----------SPAGHRLLEPLP---LLEDKIAVQAAEIER 61
           +E  +V A GM+RHG  PG           + A HR LE LP   LLEDK+A Q  EIER
Sbjct: 12  FERHLVQASGMMRHGQLPGLSSSSAVAAAAAAASHRSLESLPQSHLLEDKVADQEEEIER 71

Query: 62  LARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA 121
           LA DN RLA +H+ +R+DL +A Q++ ++K+HIR+I TESD  IRVLLDKI KME D +A
Sbjct: 72  LAGDNRRLAKTHVALRDDLVSAAQDVQKLKSHIRSIQTESDIQIRVLLDKITKMEVDIRA 131

Query: 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEH 181
           G+ ++KDLQQA IEAQSLA +RQEL+++IQ+A+  + KA  +VK+LPDL AELD L QE 
Sbjct: 132 GDSVRKDLQQALIEAQSLAASRQELSAEIQRAALEVKKAISDVKSLPDLQAELDDLVQER 191

Query: 182 RRLRATFEYEKG 193
           +RLR+TFEYEK 
Sbjct: 192 QRLRSTFEYEKS 203

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164182|ref|XP_003579974.1| PREDICTED: uncharacterized protein LOC100844332 [Brachypodium distachyon]

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/321 (37%), Positives = 174/321 (54%), Gaps = 46/321 (14%)

Query: 15  HYEGRVVPAPGMLRHGPFPGSP-AGHRLLEPLP-----LLEDKIAVQAAEIERLARDNHR 68
           H +GR   A G++RHG F  +  +G + LEP P     +LEDK+A+  AE E+L R+N R
Sbjct: 6   HLDGRSAQAQGLMRHGAFSAAILSGRQHLEPSPATTLEILEDKLAMLTAEAEKLIRENQR 65

Query: 69  LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKD 128
           L++SH  +R+D+   ++E+  I+ H+ ++  ++D  IR L+++I  MEAD +AG+ +KK+
Sbjct: 66  LSSSHQVLRQDIIDTEKEMQMIRTHLGDVQLDTDMQIRDLVERIRLMEADIQAGDAVKKE 125

Query: 129 LQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATF 188
           L Q H+EA+ L   RQ LTS+++  ++ L K      NL +L AELD LR+EH  LR+ F
Sbjct: 126 LHQVHMEAKRLITERQMLTSEVEIVTKELQKLSGNNTNLAELLAELDGLRKEHHSLRSAF 185

Query: 189 EYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAP--------------- 233
           EYEK  N+  VEQ++ ME NL+ M +E +KL  +V NAE R HA                
Sbjct: 186 EYEKNTNVKQVEQMRTMEMNLITMTKEADKLRFDVANAENRAHAAQVTAPQPGTAQAAGA 245

Query: 234 ----NPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAA 289
               NPY+  YTN   +Y    Q G      Y Q   Q G  Q              AAA
Sbjct: 246 SAATNPYASAYTNQAAAY----QQGNPQAVAYQQ---QQGTPQ--------------AAA 284

Query: 290 SGVGMPAVPASTVGAVWGGSY 310
              G P   A   G + GG+Y
Sbjct: 285 YQHGTPQAAAYQQGTLQGGAY 305

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125548727|gb|EAY94549.1| hypothetical protein OsI_16325 [Oryza sativa Indica Group]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 172/316 (54%), Gaps = 48/316 (15%)

Query: 1   MYERQQMSGRRIQPHYEGRVVPAPGMLRHGPFPG-SPAGHRLLE----PLPLLEDKIAVQ 55
           M  R Q+ GR+           A G++R G FP  S +G + L+     L +LE K+A Q
Sbjct: 1   MAYRGQLDGRQ-----------ASGLMRDGAFPAASLSGRQPLDRAATALEILEKKLAEQ 49

Query: 56  AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKM 115
            AE E+L R+N RLA+SH+ +R+D+   ++E+  I+AH+ ++ TE+D H+R L++++  M
Sbjct: 50  TAEAEKLIRENQRLASSHVVLRQDIVDTEKEMQMIRAHLGDVQTETDMHMRDLMERMRLM 109

Query: 116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELD 175
           EAD +AG+ +KK+L Q H+EA+ L   RQ LT ++ + ++ LHK   + K LP+L  ELD
Sbjct: 110 EADIQAGDAVKKELHQVHMEAKRLIAERQMLTVEMDKVTKELHKFSGDSKKLPELLTELD 169

Query: 176 SLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMR------ 229
            LR+EH+ LR+ FEYEK  NI  VEQ++ ME NL+ M +E +KL A+V NAE R      
Sbjct: 170 GLRKEHQSLRSAFEYEKNTNIKQVEQMRTMEMNLMTMTKEADKLRADVANAEKRAQVAAA 229

Query: 230 -------------------------GHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQP 264
                                      A NPYS  +T    +Y       GVY  G +Q 
Sbjct: 230 QAVAAQAGVAHVTASQPGAAQAVAVPAASNPYSSAFTGHPSAYHQGATQAGVYQQGTTQA 289

Query: 265 -LLQMGVVQTGEGMIP 279
              Q G  Q G    P
Sbjct: 290 GAYQQGSTQAGAYAYP 305

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116309908|emb|CAH66943.1| OSIGBa0116M22.10 [Oryza sativa Indica Group]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 172/316 (54%), Gaps = 48/316 (15%)

Query: 1   MYERQQMSGRRIQPHYEGRVVPAPGMLRHGPFPG-SPAGHRLLE----PLPLLEDKIAVQ 55
           M  R Q+ GR+           A G++R G FP  S +G + L+     L +LE K+A Q
Sbjct: 1   MAYRGQLDGRQ-----------ASGLMRDGAFPAASLSGRQPLDRAAIALEILEKKLAEQ 49

Query: 56  AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKM 115
            AE E+L R+N RLA+SH+ +R+D+   ++E+  I+AH+ ++ TE+D H+R L++++  M
Sbjct: 50  TAEAEKLIRENQRLASSHVVLRQDIVDTEKEMQMIRAHLGDVQTETDMHMRDLMERMRLM 109

Query: 116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELD 175
           EAD +AG+ +KK+L Q H+EA+ L   RQ LT ++ + ++ LHK   + K LP+L  ELD
Sbjct: 110 EADIQAGDAVKKELHQVHMEAKRLIAERQMLTVEMDKVTKELHKFSGDSKKLPELLTELD 169

Query: 176 SLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMR------ 229
            LR+EH+ LR+ FEYEK  NI  VEQ++ ME NL+ M +E +KL A+V NAE R      
Sbjct: 170 GLRKEHQSLRSAFEYEKNTNIKQVEQMRTMEMNLMTMTKEADKLRADVANAEKRAQVAAA 229

Query: 230 -------------------------GHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQP 264
                                      A NPYS  +T    +Y       GVY  G +Q 
Sbjct: 230 QAVAAQAGVAHVTASQPGAAQATAVPAASNPYSSAFTGHPSAYHQGATQAGVYQQGTTQA 289

Query: 265 -LLQMGVVQTGEGMIP 279
              Q G  Q G    P
Sbjct: 290 GAYQQGSTQAGAYAYP 305

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2033681	359	AT1G67170 "AT1G67170" [Arabido	0.801	0.696	0.389	6.6e-42
TAIR|locus:2156146	238	AT5G61920 "AT5G61920" [Arabido	0.576	0.756	0.45	1.3e-38
TAIR|locus:2089616	331	AT3G14750 "AT3G14750" [Arabido	0.785	0.740	0.328	2.3e-32
TAIR|locus:2035751	283	AT1G55170 "AT1G55170" [Arabido	0.756	0.833	0.353	3e-30
TAIR|locus:2060848	288	AT2G30120 [Arabidopsis thalian	0.653	0.708	0.299	4.8e-23
UNIPROTKB|F1P4A8	1431	GOLGA3 "Uncharacterized protei	0.612	0.133	0.241	5.7e-05
UNIPROTKB|E1BXY6	1519	GOLGA3 "Uncharacterized protei	0.612	0.125	0.241	6.1e-05
FB|FBgn0039731	472	sas-6 "spindle assembly abnorm	0.541	0.358	0.24	0.00011
UNIPROTKB|H7C110	250	LOC728763 "Protein LOC728763"	0.544	0.68	0.25	0.00015
TAIR|locus:2119206	779	AT4G33390 "AT4G33390" [Arabido	0.560	0.224	0.226	0.00021

TAIR|locus:2033681 AT1G67170 "AT1G67170" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 104/267 (38%), Positives = 156/267 (58%)

Query:    11 RIQP--HYEGRVVPAPGML--------RHGPFPGSPA-----GHRLLEPLPLLEDKIAVQ 55
             RI P  H+  R +P PG           HG  P S A        +L P  ++E K   Q
Sbjct:     6 RIHPSHHHMRRPLPGPGGCIAHPETFGNHGAIPPSAAQGVYPSFNMLPPPEVMEQKFVAQ 65

Query:    56 AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKM 115
               E++RLA +N RL  +H ++R++LAAAQ EI  + A I ++ +E +  +  L +K+AKM
Sbjct:    66 HGELQRLAIENQRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKSEREQRMMGLAEKVAKM 125

Query:   116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELD 175
             E + +  E +K ++QQA  EA+SL  AR+EL SK+ Q ++ L K+R +V+ +P L +EL+
Sbjct:   126 ETELQKSEAVKLEMQQARAEARSLVVAREELMSKVHQLTQELQKSRSDVQQIPALMSELE 185

Query:   176 SLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN-AEMRGHAPN 234
             +LRQE+++ RAT++YEK    D++E LQAMEKN + MARE+EKL A+++N A     A  
Sbjct:   186 NLRQEYQQCRATYDYEKKFYNDHLESLQAMEKNYMTMAREVEKLQAQLMNNANSDRRAGG 245

Query:   235 PYSRTYTNPIPSYPPSVQGGGVYVDGY 261
             PY       I +      G G Y D +
Sbjct:   246 PYGNNINAEIDASGHQ-SGNGYYEDAF 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2156146 AT5G61920 "AT5G61920" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 81/180 (45%), Positives = 124/180 (68%)

Query:    47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIR 106
             +LE+KIAVQAAEI+RL+ DN +LA+S++ ++EDL  A +E+  ++AHIR   T+ +  IR
Sbjct:    52 ILENKIAVQAAEIDRLSNDNRKLASSYVALKEDLTVADREVQGLRAHIRKTETDHEIQIR 111

Query:   107 VLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKN 166
               L+KIAKME   K  E +++++Q AHIEA  LAR R+EL SK++   + L K  LE ++
Sbjct:   112 STLEKIAKMEGMVKNRENIRREVQSAHIEAHRLAREREELASKVKLGMKDLKKVCLEAES 171

Query:   167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA 226
             L     EL+ L++EH+RLR  FE EK  N++ + QL+ ME+ ++G  + +EKL +E+  A
Sbjct:   172 LEASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSEISTA 231

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089616 AT3G14750 "AT3G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 85/259 (32%), Positives = 139/259 (53%)

Query:    22 PAPGMLRHGPFPGSPAGHRLLEP-LPLLEDKIAVQAAEIERLARDNHRLAASHITMREDL 80
             P P M+     P      R L P   +LED++A Q  +++ L  DN RLAA+H+ ++++L
Sbjct:    43 PHPSMIDDSREPQFRVDARGLPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQEL 102

Query:    81 AAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLA 140
               AQ E+ RI  +I ++  E +  +R + DK  + E + +  + ++ ++Q+   + +   
Sbjct:   103 EVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKEFT 162

Query:   141 RARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVE 200
               RQELTS++   ++ L +   +++ +P L AE+++ +QE +R RA  +YEK    +N E
Sbjct:   163 SGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYAENYE 222

Query:   201 QLQAMEKNLVGMAREMEKLHAEVVNAEMRGHA--P--NP----YSRTYTNPIPSYPPSVQ 252
               + ME  LV MARE+EKL AE+ N+E   +A  P  NP    Y   Y NP   YP +  
Sbjct:   223 HGKIMEHKLVAMARELEKLRAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPVNP- 281

Query:   253 GGGVYVDGYSQPLLQMGVV 271
                 Y   Y+    Q GVV
Sbjct:   282 ----YQPNYTMNPAQTGVV 296

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2035751 AT1G55170 "AT1G55170" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 86/243 (35%), Positives = 124/243 (51%)

Query:     7 MSGR-RIQ-----PHYEGRVVPAPGMLRHGPFPGSPAGHRLLEPLPLLEDKIAVQAAEIE 60
             MSGR RI       +++ R +P       GP    P    LLE L + E +I  Q AEI 
Sbjct:     1 MSGRNRIHRDIRDSYHDHRDLPPERPFLRGPPLLQPPPPSLLEDLQIQEGEIRRQDAEIR 60

Query:    61 RLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCK 120
             RL  DNH LA   + +  +L AA++E+ R+   I ++  E D  +R   +K  K+E D +
Sbjct:    61 RLLSDNHGLADDRMVLERELVAAKEELHRMNLMISDLRAEQDLQLREFSEKRHKLEGDVR 120

Query:   121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQE 180
             A E  KK+  Q   E Q L   ++EL+  +Q   + L K + + K +P + AE+  L++E
Sbjct:   121 AMESYKKEASQLRGEVQKLDEIKRELSGNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQKE 180

Query:   181 HRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHA-PNPYSRT 239
                 R   EYEK    + +EQ Q MEKN+V MARE+EKL AE+   + R       Y   
Sbjct:   181 LMHARDAIEYEKKEKFELMEQRQTMEKNMVSMAREVEKLRAELATVDSRPWGFGGSYGMN 240

Query:   240 YTN 242
             Y N
Sbjct:   241 YNN 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060848 AT2G30120 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 61/204 (29%), Positives = 104/204 (50%)

Query:    47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIR 106
             +LED+IA+Q  EI+ L  DN RLA +HI +++ L  A++E+ R+      +  E ++ +R
Sbjct:    38 ILEDRIAIQHREIQSLLNDNQRLAVAHIGLKDQLNVAKRELERLLETAVKVKAEGEAKVR 97

Query:   107 VLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKN 166
              +     +MEA+ +  + L  +L Q   + Q L   RQEL +++    + + KA+     
Sbjct:    98 EVYQNALRMEAEARVIDGLGAELGQVRSDVQRLGSDRQELATELAMFDDEMAKAKPNSDR 157

Query:   167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA 226
               ++  E++ LR E R+ RA  E EK     N+   + MEK +  + RE+ KL  E+V+ 
Sbjct:   158 AIEVKLEIEILRGEIRKGRAALELEKKTRASNLHHERGMEKTIDHLNREIVKLEEELVDL 217

Query:   227 EMRGHAPNPYSRTYTNPIPSYPPS 250
             E +    N  +     P P    S
Sbjct:   218 ETKAREANAAAEAAPTPSPGLAAS 241

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|F1P4A8 GOLGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 50/207 (24%), Positives = 105/207 (50%)

Query:    43 EPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD 102
             E L  L  ++A++++++E L ++N  L      ++E     QQ++  ++A+ R+  ++ D
Sbjct:   778 EILEQLRQEMAIRSSQVENLQQENGSLKKQVQKVKEQFL--QQKV-MVEAYRRDASSK-D 833

Query:   103 SHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSL----ARARQELTSKIQQASEALH 158
               I  L  K  K   D +  E LK++L Q  +E QSL    ++ ++E+T   QQ  E  +
Sbjct:   834 QLISEL--KATKKRLDSEMKE-LKRELLQIQVEKQSLETEHSKLQKEVTEVHQQMVEIEN 890

Query:   159 KARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQA-MEKNLVGMAREME 217
               +   K   ++   L SL+ +  ++ +  E  + L +  VEQ+Q   +K +    ++M+
Sbjct:   891 HLQSVQKERDEMETRLQSLQFDKEQMASLAEANQTLKLQ-VEQMQEEAKKAITEQKQKMK 949

Query:   218 KLHAEVVNAEMRGHAPNPYSRTYTNPI 244
             +L +++ +A+    A +   + Y N +
Sbjct:   950 RLGSDLTSAQKEMKAKH---KAYENAV 973

GO:0000139 "Golgi membrane" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|E1BXY6 GOLGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 50/207 (24%), Positives = 105/207 (50%)

Query:    43 EPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD 102
             E L  L  ++A++++++E L ++N  L      ++E     QQ++  ++A+ R+  ++ D
Sbjct:   823 EILEQLRQEMAIRSSQVENLQQENGSLKKQVQKVKEQFL--QQKV-MVEAYRRDASSK-D 878

Query:   103 SHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSL----ARARQELTSKIQQASEALH 158
               I  L  K  K   D +  E LK++L Q  +E QSL    ++ ++E+T   QQ  E  +
Sbjct:   879 QLISEL--KATKKRLDSEMKE-LKRELLQIQVEKQSLETEHSKLQKEVTEVHQQMVEIEN 935

Query:   159 KARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQA-MEKNLVGMAREME 217
               +   K   ++   L SL+ +  ++ +  E  + L +  VEQ+Q   +K +    ++M+
Sbjct:   936 HLQSVQKERDEMETRLQSLQFDKEQMASLAEANQTLKLQ-VEQMQEEAKKAITEQKQKMK 994

Query:   218 KLHAEVVNAEMRGHAPNPYSRTYTNPI 244
             +L +++ +A+    A +   + Y N +
Sbjct:   995 RLGSDLTSAQKEMKAKH---KAYENAV 1018

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0017119 "Golgi transport complex" evidence=IEA

FB|FBgn0039731 sas-6 "spindle assembly abnormal 6" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
 Identities = 42/175 (24%), Positives = 78/175 (44%)

Query:    47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIR 106
             +LE  +    AEI        RL   +  +RE LA   + +   + H   +H   +   +
Sbjct:   178 ILEQSMQQMQAEINAQRAHAERLTTENTNIREALAENTRILE--EKHAAEVHQYQEKLSK 235

Query:   107 VLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH--KARL-E 163
             +   +  ++E + +A    +  L +A +E   L  A+++   + Q  SE L   KAR+  
Sbjct:   236 INEQRSNELERNRRAISGFQAQLDKASLEKAELKSAQEQAEKRCQTLSEELSCCKARVCT 295

Query:   164 VKNLPD-LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREME 217
             +K   D LH ++ ++R+  R+L    E  K   ++  E +Q   K    +A E+E
Sbjct:   296 LKEQNDKLHGDVANIRKHERKLEYKIEDLKQHTVELQEHIQKGNKEKANIAAELE 350

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=ISS;IDA

GO:0051298 "centrosome duplication" evidence=ISS;IMP

GO:0005814 "centriole" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0007099 "centriole replication" evidence=IDA;IMP

GO:0051297 "centrosome organization" evidence=IMP

UNIPROTKB|H7C110 LOC728763 "Protein LOC728763" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 46/184 (25%), Positives = 85/184 (46%)

Query:    48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRV 107
             L+D +A +  ++ER A    RL A     +E LAA +QE+  ++     +H E+    R 
Sbjct:     9 LQD-LAAERGDVEREAE---RLRAQLTVAQEGLAALRQELQGVEESREGLHREAQEARRA 64

Query:   108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI---QQASEALHKARLEV 164
             L D+  + +        L+  + +A  E  S  R+++E   K+   ++A  AL +    +
Sbjct:    65 LSDEAREKDVLLLFNSELRATICRAEQEKASFKRSKEEKEQKLLILEEAQAALQQEASAL 124

Query:   165 K-NLPDLHAELDSLRQE----HRRLRATFEYEKGLNIDNVEQLQAM-EKNLVGMAREMEK 218
             + +L +L       RQE    HR++R T + E         +LQA   + ++ + R+  K
Sbjct:   125 RAHLWELEQAGGDARQELRELHRQVR-TLKAENQRRSGEAHELQAQCSQEVLELRRQAAK 183

Query:   219 LHAE 222
               A+
Sbjct:   184 AEAK 187

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
 Identities = 43/190 (22%), Positives = 93/190 (48%)

Query:    45 LPLLEDKIAVQAAEIERLARDNHRLAASHITMRE------DLAAAQQEIPRIKAHI---R 95
             + L+  K +++ A    L  + HR+ A+ +  +E      +L  A++E+ R+K H+   +
Sbjct:   339 IELIATKESLECAHSSHLEAEEHRIGAAMLRDQETHRWEKELKQAEEELQRLKQHLVSTK 398

Query:    96 NIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASE 155
              +  + +    +LLD + K  AD K   ++K++  +  +   ++  + QE T+ IQ+A  
Sbjct:   399 ELQVKLEFASALLLD-LKKELADHKESSKVKEETSETVVT--NIEISLQEKTTDIQKAVA 455

Query:   156 ALHKARLEVK-NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEK-NLVGMA 213
             +  K   EV  N+    +E++ L+     LR   + EK   +D+++Q + M    +  + 
Sbjct:   456 SAKKELEEVNANVEKATSEVNCLKVASSSLRLEIDKEKSA-LDSLKQREGMASVTVASLE 514

Query:   214 REMEKLHAEV 223
              E++    E+
Sbjct:   515 AEIDITRCEI 524

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00061343 hypothetical protein (298 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-05
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	8e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
pfam05478	807	pfam05478, Prominin, Prominin	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
pfam05667	536	pfam05667, DUF812, Protein of unknown function (DU	8e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
pfam09755	308	pfam09755, DUF2046, Uncharacterized conserved prot	0.003

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 33/184 (17%), Positives = 81/184 (44%), Gaps = 17/184 (9%)

Query: 48  LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH---TESDSH 104
           L  ++     E+E+L ++   L+     +R+DLA  + E+ +++  I  +    TE ++ 
Sbjct: 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762

Query: 105 IRVLLDKIAKMEADCKAGER----LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA 160
           I  L +++ + E +    E     L+  ++Q   E ++L  A  EL +++   +E     
Sbjct: 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822

Query: 161 RLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH 220
           R  +++L      + +  +    L    E       +  E ++++   +  +   +E+L 
Sbjct: 823 RERLESL---ERRIAATERRLEDLEEQIE-------ELSEDIESLAAEIEELEELIEELE 872

Query: 221 AEVV 224
           +E+ 
Sbjct: 873 SELE 876

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 48  LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA---HIRNIHTESDSH 104
           L+ ++     E+E L  +   L      + E+L + ++ + ++K     +          
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794

Query: 105 IRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV 164
           +  L +++ + E    A ER  + L+Q     + L +  +EL  +I++  E L +   E+
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQ---RRERLEQEIEELEEEIEELEEKLDELEEEL 851

Query: 165 KNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV 224
           + L     EL    +E    +   E E     +  E+ + +E+ L  +  E+ +L  E+ 
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDELK---ELEEEKEELEEELRELESELAELKEEIE 908

Query: 225 NAEMRGHA 232
               R   
Sbjct: 909 KLRERLEE 916

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 36/192 (18%), Positives = 79/192 (41%), Gaps = 19/192 (9%)

Query: 48  LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHT---ESDSH 104
            E ++     E+E L +   RL      + E++   ++++  ++  +  +     E    
Sbjct: 805 AERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEE 864

Query: 105 IRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV 164
           +  L  +  ++E + K  E  K++L++   E + L     EL  +I++  E L +   ++
Sbjct: 865 LEELEAEKEELEDELKELEEEKEELEE---ELRELESELAELKEEIEKLRERLEELEAKL 921

Query: 165 K----NLPDLHAEL---------DSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG 211
           +     LP+L  EL           L +E  RL    E    +N+  +E+ + +E+    
Sbjct: 922 ERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEE 981

Query: 212 MAREMEKLHAEV 223
           +  + E L    
Sbjct: 982 LKSQREDLEEAK 993

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 14/198 (7%)

Query: 41  LLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTE 100
           L E L   E +I    +E+E L  +   L    + ++E++   + EI  ++  +  +  E
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 101 SDSH---IRVLLDKIAKMEADCKAGERLKKDLQQAHIE--------AQSLARARQELTSK 149
            +     +  L +KI  ++ + +  E L ++L+Q   E         + L+   +EL   
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377

Query: 150 IQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
            +   E L +   E+    ++  EL+ L++E   L    E       D  E+L+ +E  L
Sbjct: 378 FEALREELAELEAELA---EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 210 VGMAREMEKLHAEVVNAE 227
             +  E+E+L+ E+   E
Sbjct: 435 EELQTELEELNEELEELE 452

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 4/177 (2%)

Query: 55  QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAK 114
           +  EIE L      L      + + LA  ++E+  ++  +  +  E +   R +      
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 115 MEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLP----DL 170
           +       E+L++ + Q   E   L    +EL  ++++A E L +A  E++ L      L
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 171 HAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227
             EL +LR+    LRA          +  E+L+++E+ +    R +E L  ++    
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 33/187 (17%), Positives = 78/187 (41%), Gaps = 10/187 (5%)

Query: 48  LEDKIAVQAAEIERLARDNH-------RLAASHITMREDLAAAQQEIPRIKAHIRNIHTE 100
           L+ ++A    E+E+L             L      ++E L   ++E+  ++  +  +  E
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780

Query: 101 SDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA 160
            +           ++E   +  E  ++ L     E +SL + R+ L  +I++  E + + 
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840

Query: 161 RLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH 220
             ++  L +   EL+   +E +      E EK    D +++L+  ++ L     E+ +L 
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL---EEELRELE 897

Query: 221 AEVVNAE 227
           +E+   +
Sbjct: 898 SELAELK 904

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 15/201 (7%)

Query: 41  LLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTE 100
           L E L   E+++A   AEIE L     +L      +RE L   + E+  +     N+   
Sbjct: 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825

Query: 101 SDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS------ 154
            +S  R +     ++E   +  E L +D++    E + L    +EL S+++         
Sbjct: 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885

Query: 155 -EALHKARLEVKNLP----DLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
            EAL   R E++ L     +L ++   LR+E   LR      +      +E L+    NL
Sbjct: 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE----LRLEGLEVRIDNL 941

Query: 210 VGMAREMEKLHAEVVNAEMRG 230
                E   L  E   A    
Sbjct: 942 QERLSEEYSLTLEEAEALENK 962

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 38/189 (20%), Positives = 78/189 (41%), Gaps = 14/189 (7%)

Query: 39  HRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH 98
              LE L + E+++      +E L     RL         ++   ++E+  ++A +  + 
Sbjct: 263 SLELEALKIREEELRELERLLEELEEKIERLEELE----REIEELEEELEGLRALLEELE 318

Query: 99  TESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH 158
              +  ++ L +++ K+E   +  E   ++L +   E   L   R +   +  +  E   
Sbjct: 319 ELLE-KLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKEL 377

Query: 159 KARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEK 218
           +  LE      L   +  L++E   L A  E       +  E+L+ +EK L  + RE+E+
Sbjct: 378 EKALERLK--QLEEAIQELKEELAELSAALE-------EIQEELEELEKELEELERELEE 428

Query: 219 LHAEVVNAE 227
           L  E+   E
Sbjct: 429 LEEEIKKLE 437

Length = 908

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 31/153 (20%)

Query: 67  HRLAASHITMREDLA---AAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADC---- 119
             L  +   ++ED        + +  IK  +R+     +  +R  L ++     DC    
Sbjct: 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELR-QLKQLEDELEDCDPTE 205

Query: 120 --KAGERLKKDLQQAHIEAQSLA---RARQELTSKIQQASEALHKARLEVKNLPDLHAEL 174
             +A E+LKK LQ+  I+ + L       QEL SKI+  +    +   E+       AE 
Sbjct: 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI-------AEA 258

Query: 175 DSLRQEHR--------RLRATF---EYEKGLNI 196
           +   ++ R        +L+      +   G  I
Sbjct: 259 EKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKI 291

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 35/168 (20%)

Query: 52  IAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDK 111
           I    +E   L R   RL      ++ +L++ Q E+ RI+  +     E    +     K
Sbjct: 666 ILFSRSEPAELQRLRERLEG----LKRELSSLQSELRRIENRLD----ELSQELSDASRK 717

Query: 112 IAKMEADCKAGERLKKDLQQAHIEA-------QSLARAR-------QELTSKIQQASEAL 157
           I ++E +    E+L+++ ++             SL +         +EL ++I++  E L
Sbjct: 718 IGEIEKE---IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774

Query: 158 HKARLEVKNL---------PDLHAELDSLRQEHRRLRA-TFEYEKGLN 195
           HK    + +L         P++ AEL  L +E  R+ A   E E+ LN
Sbjct: 775 HKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 9/177 (5%)

Query: 58  EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA 117
           E+ER   +  R  A+     E L +  +E+      +     E    +  L +++  +E 
Sbjct: 713 ELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE- 771

Query: 118 DCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL----PDLHAE 173
             +A  +LK+++++   + Q+L    +EL  ++++A   L     E+++L      L  E
Sbjct: 772 --EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829

Query: 174 LDSLRQEHRRLRATFEYEKGLNIDNVE-QLQAMEKNLVGMAREMEKLHAEVVNAEMR 229
           ++ L +E   L    +  +   ++ +E +L+ +++ L  +  E E+L  E+   E  
Sbjct: 830 IEELEEEIEELEEKLDELE-EELEELEKELEELKEELEELEAEKEELEDELKELEEE 885

Length = 1163

>gnl|CDD|218602 pfam05478, Prominin, Prominin

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/198 (16%), Positives = 77/198 (38%), Gaps = 36/198 (18%)

Query: 56  AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKM 115
             +I+ +   N++     ++  +DL  A + +         IH E  SH+  +L+ I ++
Sbjct: 194 PQQIDHVLAQNYQETQDQVS--KDLDGAGEHL------GGRIHDELKSHVLPVLEAIVEL 245

Query: 116 EA---DCKAG-ERLKKDLQQAHIEAQ----SLARARQELTSKIQQA-----------SEA 156
                + K G E + K L++           L   R+ L + + +            S +
Sbjct: 246 GQVLQEMKDGLESVNKTLKELREGGSQLRDGLRGVRRRLNNSLNKLCLTQMCASILSSLS 305

Query: 157 LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYE--KGLN-IDNVEQLQAMEKNLV--G 211
           +     +   LPD+   L++L +    ++A F     +G +  + +      + + V   
Sbjct: 306 ILALDADFNQLPDVTEILENLEE---VVKADFSSIVQEGNSTFEEIPSKVKNQTSSVVPD 362

Query: 212 MAREMEKLHAEVVN-AEM 228
           +   ++ L  ++ + AE 
Sbjct: 363 VKAALDSLGTDIKSVAED 380

The prominins are an emerging family of proteins that among the multispan membrane proteins display a novel topology. Mouse prominin and human prominin (mouse)-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration. Length = 807

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 24/173 (13%)

Query: 58  EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA 117
           EIE   +   +L   +  ++E+L   + E+  +         E   +   L     ++  
Sbjct: 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 118 DCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASE---ALHKARLEVK----NLPDL 170
             +  +RL+++LQ+   E   LA     +     + +E         LE+K     L  L
Sbjct: 404 LKRELDRLQEELQRLSEE---LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460

Query: 171 HAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV 223
            A+L    QE   L+                   +EK L  + RE+ +  A+ 
Sbjct: 461 AADLSKYEQELYDLKEE--------------YDRVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812)

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 18/157 (11%)

Query: 44  PLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDS 103
            L  L+++I    + IE +  +   LA+    + E+L   +QE   ++   + I   +  
Sbjct: 271 ELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYK-IKKRT-- 327

Query: 104 HIRVLLD---KIAKMEADCKA-GERLKKDLQQ--AH----IEA-QSLARARQELTSKIQQ 152
            + +L D    +AK++A   A  ERL +  QQ  AH    I+  +SL    +    + Q+
Sbjct: 328 -VELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDETQR 386

Query: 153 ASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE 189
             + + K R +++   +L +EL +  Q +++L   +E
Sbjct: 387 QLDEIKKLRNKIE---ELESELQTKEQLYKQLLDEYE 420

This family consists of several eukaryotic proteins of unknown function. Length = 536

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 51  KIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLD 110
            I     E +RL              R+ L  A+ E+  +   +  +  E +     L +
Sbjct: 11  AIQKLDLEKDRLEP----RIKEI---RKALKKAKAELEALNKALEALEIELED----LEN 59

Query: 111 KIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPD- 169
           +++++E++ +      K  ++  + A    R  + L  +IQ A E ++    E+  L + 
Sbjct: 60  QVSQLESEIQEIRERIKRAEEK-LSAVKDERELRALNIEIQIAKERINSLEDELAELMEE 118

Query: 170 ---LHAELDSLRQEHRRLRATFEYEK 192
              L  E++ L++   RL       +
Sbjct: 119 IEKLEKEIEDLKERLERLEKNLAEAE 144

Length = 239

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 42  LEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101
            E +  L  K+A     IE L R    LAA       D     + +   +  +  ++ E 
Sbjct: 571 REEVAELNSKLAELKERIESLERIRTLLAA-----IADAEDEIERLREKREALAELNDER 625

Query: 102 DSHIRVLLDKIAKMEA--DCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHK 159
              +    ++  ++EA  D    E  ++D ++A           +++  K+ +  E    
Sbjct: 626 RERLAEKRERKRELEAEFDEARIEEAREDKERA-------EEYLEQVEEKLDELREERDD 678

Query: 160 ARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAM 205
            + E+  + +   EL+ LR+    L    E  + L  D  E+L++M
Sbjct: 679 LQAEIGAVENELEELEELRERREALENRVEALEALY-DEAEELESM 723

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 32/189 (16%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 48  LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIR-------NIHTE 100
           L  ++     ++E L  +   L      ++++L A   EI R++   +       N+  +
Sbjct: 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317

Query: 101 SDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA 160
            +     L +  +K++   +    L++ L++   E +SL    +EL +++++    L + 
Sbjct: 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377

Query: 161 RLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH 220
               + L  L +++  L  +   L    E           +L+ +E     + +E+E+L 
Sbjct: 378 E---EQLETLRSKVAQLELQIASLNNEIER-------LEARLERLEDRRERLQQEIEELL 427

Query: 221 AEVVNAEMR 229
            ++  AE++
Sbjct: 428 KKLEEAELK 436

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 39/189 (20%)

Query: 40  RLLEPLPLLEDKIAVQAAEIER---------------------LARDNHRLAASHITM-- 76
            L E L  L++KI     E+E                      L      L      +  
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379

Query: 77  --REDLAAAQQEIPRIKAHIRNIHTESDS--------------HIRVLLDKIAKMEADCK 120
             RE+LA  + E+  I+  +  +  E +S                  L +  A++E    
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQT 439

Query: 121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQE 180
             E L ++L++   + + L    +EL  ++ +  E L +   E+ +L      L++ ++ 
Sbjct: 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Query: 181 HRRLRATFE 189
            + +RA  E
Sbjct: 500 SQGVRAVLE 508

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 10/150 (6%)

Query: 75  TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGE--RLKKDLQQA 132
            +   LA+ ++E+ ++   I  +    +  I  LL+++ K   D    E  R+K+ + + 
Sbjct: 241 AIERQLASLEEELEKLTEEISELEKRLEE-IEQLLEELNKKIKDLGEEEQLRVKEKIGEL 299

Query: 133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEK 192
             E  SL R+  E   +++ A E L K   E+  L     EL+   +E R+ R     E 
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE- 358

Query: 193 GLNIDNVEQLQAMEKNLVGMAREMEKLHAE 222
                   +L+   ++L     E++K  AE
Sbjct: 359 ------YAELKEELEDLRAELEEVDKEFAE 382

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 34/147 (23%), Positives = 78/147 (53%), Gaps = 11/147 (7%)

Query: 78  EDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQ 137
           E +   ++E+  +   I  I +E    +  L +++ K+E + K  E LK+++++   E +
Sbjct: 193 ELIKEKEKELEEVLREINEISSE----LPELREELEKLEKEVKELEELKEEIEELEKELE 248

Query: 138 SLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR---QEHRRLRATF-EYEKG 193
           SL  ++++L  KI++  E + + + E++ L +   EL  L+   +E+ +L   + EY   
Sbjct: 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308

Query: 194 LNIDNVEQ-LQAMEKNLVGMAREMEKL 219
           L    +E+ L  +E+ + G+   +++L
Sbjct: 309 LR--EIEKRLSRLEEEINGIEERIKEL 333

Length = 880

>gnl|CDD|150430 pfam09755, DUF2046, Uncharacterized conserved protein H4 (DUF2046)

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 20/136 (14%)

Query: 110 DKIAKMEAD-----CKAGERLKKDLQQAHIEAQSLARARQE-------LTSKIQ-----Q 152
           +K+ KME D     CK+ +   + L+QA +  Q  A+A QE       L  KIQ     +
Sbjct: 36  NKVLKMELDTFKLKCKSLQEENRALRQASVSIQ--AKAEQEEEFISNTLLKKIQALKKEK 93

Query: 153 ASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV-EQLQAMEKNLVG 211
            + A++  + E     DL  +L  LRQE  +L  T E E+   ++ +  ++  +E + + 
Sbjct: 94  ETLAMNYEQEEEFLTNDLSRKLTQLRQEKIQLEQTLEQEQEYQVNKLMRKIDKLEADTLA 153

Query: 212 MAREMEKLHAEVVNAE 227
               +E+L  E V+ E
Sbjct: 154 KQTSLEQLRREKVDLE 169

This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain. Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PRK11637	428	AmiB activator; Provisional	99.02
PRK11637	428	AmiB activator; Provisional	98.43
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.18
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.12
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.11
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.11
COG4942	420	Membrane-bound metallopeptidase [Cell division and	98.08
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.02
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.95
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.93
COG4372	499	Uncharacterized protein conserved in bacteria with	97.87
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.86
PRK03918	880	chromosome segregation protein; Provisional	97.74
PRK09039	343	hypothetical protein; Validated	97.67
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.63
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.63
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.59
PRK02224	880	chromosome segregation protein; Provisional	97.58
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	97.56
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.56
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.54
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.51
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.5
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.49
PHA02562	562	46 endonuclease subunit; Provisional	97.42
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.42
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.41
PRK02224	880	chromosome segregation protein; Provisional	97.39
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.33
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	97.33
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.32
PRK09039	343	hypothetical protein; Validated	97.3
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.27
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.25
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.24
PRK03918	880	chromosome segregation protein; Provisional	97.2
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	97.2
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.15
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.12
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.12
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.11
PHA02562	562	46 endonuclease subunit; Provisional	97.09
PRK04863	1486	mukB cell division protein MukB; Provisional	97.09
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.08
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	97.08
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.05
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	97.05
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	97.01
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.01
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.0
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	96.97
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.94
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	96.92
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.87
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.87
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.86
PRK04778	569	septation ring formation regulator EzrA; Provision	96.85
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.83
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.81
COG4372	499	Uncharacterized protein conserved in bacteria with	96.8
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.8
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.79
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.76
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.74
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.74
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	96.72
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.72
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	96.69
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.66
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.65
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.6
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	96.6
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.56
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.51
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.5
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.45
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.42
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.39
PF10186	302	Atg14: UV radiation resistance protein and autopha	96.38
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.38
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.37
PRK04863	1486	mukB cell division protein MukB; Provisional	96.36
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.35
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.34
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	96.33
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.32
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.32
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.31
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.3
PF10186	302	Atg14: UV radiation resistance protein and autopha	96.26
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.24
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.21
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	96.2
PF13514	1111	AAA_27: AAA domain	96.13
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.13
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	96.06
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.01
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.99
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	95.98
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.98
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	95.95
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.94
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.93
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.92
KOG4807	593	consensus F-actin binding protein, regulates actin	95.92
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	95.92
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.9
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.89
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.88
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.87
PRK04778	569	septation ring formation regulator EzrA; Provision	95.87
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.86
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.8
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.78
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.77
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	95.73
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.73
KOG4673	961	consensus Transcription factor TMF, TATA element m	95.73
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.69
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.67
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	95.66
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	95.66
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.63
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	95.61
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.56
PRK10246	1047	exonuclease subunit SbcC; Provisional	95.55
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	95.55
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.54
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.52
KOG0249	916	consensus LAR-interacting protein and related prot	95.51
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	95.51
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.5
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.32
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	95.3
PF13514	1111	AAA_27: AAA domain	95.25
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	95.18
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.11
PRK10361	475	DNA recombination protein RmuC; Provisional	95.1
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.04
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	95.04
PRK12704	520	phosphodiesterase; Provisional	95.02
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.01
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.98
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	94.96
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.92
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.91
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.9
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.89
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	94.85
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	94.85
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	94.84
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	94.84
KOG4807	593	consensus F-actin binding protein, regulates actin	94.81
COG2433	652	Uncharacterized conserved protein [Function unknow	94.75
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	94.73
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.65
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	94.61
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.61
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	94.57
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.56
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.53
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	94.51
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.43
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.41
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.39
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	94.34
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	94.34
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.33
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.27
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	94.24
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.23
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	94.2
KOG0964	1200	consensus Structural maintenance of chromosome pro	94.18
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.13
PRK00106	535	hypothetical protein; Provisional	94.07
PRK10929	1109	putative mechanosensitive channel protein; Provisi	94.07
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	94.01
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	93.98
KOG1937	521	consensus Uncharacterized conserved protein [Funct	93.95
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.94
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.77
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.77
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	93.69
PRK10884	206	SH3 domain-containing protein; Provisional	93.66
KOG3647	338	consensus Predicted coiled-coil protein [General f	93.63
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.62
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.57
PRK10246	1047	exonuclease subunit SbcC; Provisional	93.54
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	93.52
PRK10361	475	DNA recombination protein RmuC; Provisional	93.5
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	93.49
KOG4687	389	consensus Uncharacterized coiled-coil protein [Fun	93.47
PF15294	278	Leu_zip: Leucine zipper	93.45
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	93.43
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	93.41
PRK11281	1113	hypothetical protein; Provisional	93.41
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.41
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.38
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	93.33
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	93.3
KOG1937	521	consensus Uncharacterized conserved protein [Funct	93.3
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.18
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.15
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	93.15
COG2433	652	Uncharacterized conserved protein [Function unknow	93.09
PRK12704	520	phosphodiesterase; Provisional	93.06
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	93.01
PRK11519	719	tyrosine kinase; Provisional	92.99
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	92.94
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	92.9
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.88
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	92.88
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	92.86
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.82
PRK10884	206	SH3 domain-containing protein; Provisional	92.81
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	92.73
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	92.71
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	92.68
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	92.66
PRK00409	782	recombination and DNA strand exchange inhibitor pr	92.66
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	92.66
COG3206	458	GumC Uncharacterized protein involved in exopolysa	92.64
PRK00106	535	hypothetical protein; Provisional	92.62
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	92.58
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	92.54
KOG0249	916	consensus LAR-interacting protein and related prot	92.5
PRK03947	140	prefoldin subunit alpha; Reviewed	92.45
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	92.44
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.34
PF15294	278	Leu_zip: Leucine zipper	92.33
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.19
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.19
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.13
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	92.1
PLN02939	977	transferase, transferring glycosyl groups	92.1
KOG4677	554	consensus Golgi integral membrane protein [Intrace	92.1
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	92.09
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	92.09
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.06
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.02
KOG2991	330	consensus Splicing regulator [RNA processing and m	91.91
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	91.75
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.67
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	91.65
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	91.64
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	91.62
PRK10698	222	phage shock protein PspA; Provisional	91.6
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	91.46
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	91.45
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	91.41
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.4
KOG0018	1141	consensus Structural maintenance of chromosome pro	91.39
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.3
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	91.2
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	91.19
PRK09343	121	prefoldin subunit beta; Provisional	91.19
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	91.18
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	91.16
PF14992	280	TMCO5: TMCO5 family	91.15
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	91.12
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.88
KOG1962	216	consensus B-cell receptor-associated protein and r	90.82
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.8
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	90.65
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	90.56
PRK10869	553	recombination and repair protein; Provisional	90.54
KOG0979	1072	consensus Structural maintenance of chromosome pro	90.49
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	90.42
PRK09343	121	prefoldin subunit beta; Provisional	90.33
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	90.28
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	90.28
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	90.25
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.21
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	90.02
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	90.01
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	89.99
PRK10929	1109	putative mechanosensitive channel protein; Provisi	89.99
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	89.7
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	89.53
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	89.49
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	89.42
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	89.41
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	89.37
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	89.27
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	89.18
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.17
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	89.14
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	89.08
PRK10869	553	recombination and repair protein; Provisional	89.08
PRK10476	346	multidrug resistance protein MdtN; Provisional	89.03
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	88.98
PRK10698	222	phage shock protein PspA; Provisional	88.85
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	88.84
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.81
PRK11546	143	zraP zinc resistance protein; Provisional	88.77
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	88.69
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	88.68
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	88.67
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	88.66
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	88.49
KOG4687	389	consensus Uncharacterized coiled-coil protein [Fun	88.47
PRK11519	719	tyrosine kinase; Provisional	88.47
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	88.43
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	88.38
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	88.34
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	88.32
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	88.22
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	88.19
KOG4572	1424	consensus Predicted DNA-binding transcription fact	88.14
PRK11546	143	zraP zinc resistance protein; Provisional	88.09
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	88.08
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	88.08
KOG0963	629	consensus Transcription factor/CCAAT displacement	87.87
PRK11281	1113	hypothetical protein; Provisional	87.83
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	87.78
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	87.77
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	87.71
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	87.69
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.43
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	87.29
KOG1103	561	consensus Predicted coiled-coil protein [Function	87.29
COG5293	591	Predicted ATPase [General function prediction only	87.15
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.08
PLN02939	977	transferase, transferring glycosyl groups	87.07
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	86.93
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	86.9
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	86.78
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	86.77
COG4477	570	EzrA Negative regulator of septation ring formatio	86.67
KOG4657	246	consensus Uncharacterized conserved protein [Funct	86.65
TIGR02231	525	conserved hypothetical protein. This family consis	86.57
PRK03598	331	putative efflux pump membrane fusion protein; Prov	86.51
PF14992	280	TMCO5: TMCO5 family	86.47
cd07673	269	F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A	86.45
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	86.39
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	86.18
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	86.15
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	86.04
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	85.99
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	85.76
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	85.73
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	85.35
TIGR02231	525	conserved hypothetical protein. This family consis	85.25
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	85.16
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	85.16
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	85.1
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	85.06
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.0
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	84.99
PF07139	302	DUF1387: Protein of unknown function (DUF1387); In	84.78
KOG2751	447	consensus Beclin-like protein [Signal transduction	84.73
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	84.68
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	84.68
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	84.56
PRK12705	508	hypothetical protein; Provisional	84.54
KOG3647	338	consensus Predicted coiled-coil protein [General f	84.46
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	84.32
PRK00409	782	recombination and DNA strand exchange inhibitor pr	84.29
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	84.2
KOG3433	203	consensus Protein involved in meiotic recombinatio	84.16
PF12004	495	DUF3498: Domain of unknown function (DUF3498); Int	84.16
PF04799	171	Fzo_mitofusin: fzo-like conserved region; InterPro	84.11
COG3264	835	Small-conductance mechanosensitive channel [Cell e	84.05
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	83.96
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	83.87
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	83.79
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	83.67
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	83.53
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	83.52
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	83.4
PRK11820	288	hypothetical protein; Provisional	83.36
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	83.29
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	83.27
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	82.94
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	82.9
TIGR00255	291	conserved hypothetical protein TIGR00255. The appa	82.71
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	82.69
cd00176	213	SPEC Spectrin repeats, found in several proteins i	82.67
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	82.65
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	82.56
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	82.56
PRK08475	167	F0F1 ATP synthase subunit B; Validated	82.52
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	82.42
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	82.32
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	82.31
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	82.25
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	82.22
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	82.15
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	82.14
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	82.14
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	82.1
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	81.75
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	81.7
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.7
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	81.53
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	81.15
PRK13169	110	DNA replication intiation control protein YabA; Re	81.1
PF14817	632	HAUS5: HAUS augmin-like complex subunit 5	81.1
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	81.06
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	81.04
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	81.0
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.55
PTZ00121	2084	MAEBL; Provisional	80.49
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	80.45
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	80.33
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.32
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	80.31
TIGR01541	332	tape_meas_lam_C phage tail tape measure protein, l	80.3
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	80.28
PF09486	158	HrpB7: Bacterial type III secretion protein (HrpB7	80.13
PLN03188	1320	kinesin-12 family protein; Provisional	80.12
COG3096	1480	MukB Uncharacterized protein involved in chromosom	80.11
PRK05431	425	seryl-tRNA synthetase; Provisional	80.09

>PRK11637 AmiB activator; Provisional

Probab=99.02  E-value=3.5e-07  Score=91.03  Aligned_cols=88  Identities=19%  Similarity=0.271  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHHHHH
Q 021465          136 AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKNLVG  211 (312)
Q Consensus       136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEknL~~  211 (312)
                      +..|...|++++.++...+++|...+.   ++...+++++.+.++++..++.++.+++.+...+.++    +..++.+..
T Consensus       161 l~~i~~~d~~~l~~l~~~~~~L~~~k~---~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~  237 (428)
T PRK11637        161 FGYLNQARQETIAELKQTREELAAQKA---ELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSE  237 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999988886   7788888888888898888888888888877766666    445556777


Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          212 MAREMEKLHAEVVNA  226 (312)
Q Consensus       212 marEvekLrAEIana  226 (312)
                      +.++.++|.+.|+..
T Consensus       238 l~~~~~~L~~~I~~l  252 (428)
T PRK11637        238 LRANESRLRDSIARA  252 (428)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777666643

>PRK11637 AmiB activator; Provisional

Probab=98.43  E-value=0.00029  Score=70.27  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHH
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGM  212 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~m  212 (312)
                      +.-++.|...+++|..+.+.+..++...+...+++...+++|+..+++.+...+.++.+++.....+.+++.-++.|..+
T Consensus       169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~  248 (428)
T PRK11637        169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS  248 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777777777777777777777777666677777788888888877777777777777777776665555444433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.27  E-value=0.00026  Score=76.85  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanae  227 (312)
                      ..+.+++..+..++.+++.++..++
T Consensus       472 ~~~~~~l~~l~~~l~~l~~~~~~l~  496 (1164)
T TIGR02169       472 YDLKEEYDRVEKELSKLQRELAEAE  496 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.18  E-value=0.00054  Score=74.44  Aligned_cols=50  Identities=28%  Similarity=0.329  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhh
Q 021465           48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNI   97 (312)
Q Consensus        48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~   97 (312)
                      ++.++.....++..+-.....+......+++++..++.++..+...+..+
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l  341 (1164)
T TIGR02169       292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL  341 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444445555544444444444444444444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.12  E-value=0.0009  Score=72.35  Aligned_cols=16  Identities=38%  Similarity=0.472  Sum_probs=7.2

Q ss_pred             hHHHHHHHHHHHHhhh
Q 021465           48 LEDKIAVQAAEIERLA   63 (312)
Q Consensus        48 lE~~l~~q~~Ei~~L~   63 (312)
                      ++.++...+.++..+-
T Consensus       689 l~~~l~~~~~~~~~~~  704 (1179)
T TIGR02168       689 LEEKIAELEKALAELR  704 (1179)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4445444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.11  E-value=0.00093  Score=72.26  Aligned_cols=13  Identities=23%  Similarity=0.396  Sum_probs=5.2

Q ss_pred             hHHHHHHHHHHHH
Q 021465           48 LEDKIAVQAAEIE   60 (312)
Q Consensus        48 lE~~l~~q~~Ei~   60 (312)
                      ++..+.....+++
T Consensus       703 ~~~~l~~l~~~~~  715 (1179)
T TIGR02168       703 LRKELEELEEELE  715 (1179)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444433333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.11  E-value=0.0018  Score=69.14  Aligned_cols=102  Identities=18%  Similarity=0.290  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465          126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKA----RLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQ  201 (312)
Q Consensus       126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~----kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq  201 (312)
                      |+...++..|+++|...-+..-+++..+.+++...    +...+.++.|...|..|+.+-+++...+-.|.+...++..-
T Consensus       544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa  623 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA  623 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333334444444444443344444444433211    22234678888888889999999999988899998888876


Q ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          202 L-------QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       202 ~-------qaMEknL~~marEvekLrAEIanae  227 (312)
                      +       ...+..+..-.+||..|++.|+..-
T Consensus       624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6       4555666777889999988888644

; GO: 0016021 integral to membrane

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=98.08  E-value=0.0034  Score=63.30  Aligned_cols=70  Identities=14%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHh
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEAD  118 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eae  118 (312)
                      +++|..-..||..+-..=..-......|+.+|..+..||..+.+.+.....+.   +.+|.++..+..+++..
T Consensus        37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444444444444333333333444444555555555554444333333322   33444444444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.02  E-value=0.0018  Score=67.10  Aligned_cols=53  Identities=19%  Similarity=0.371  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHT   99 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~a   99 (312)
                      +|+.+|+.-..|...|...|..|-.....|+.++..++.+|.........++.
T Consensus       140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~  192 (546)
T PF07888_consen  140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ  192 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777677777888888888777777777777777777666655444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.95  E-value=0.0011  Score=62.34  Aligned_cols=141  Identities=21%  Similarity=0.305  Sum_probs=100.2

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh----------hHHHHHHHHHhhhhhHhhhhhHHHHH
Q 021465           58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES----------DSHIRVLLDKIAKMEADCKAGERLKK  127 (312)
Q Consensus        58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~----------e~qiR~L~ek~~k~Eaelra~e~lk~  127 (312)
                      .|+.|..++-||..-.-..+.+|..++.|+-+++..+.+++.+.          +..|+++-+|..+.|-.+.++-..+ 
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~-   89 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER-   89 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH-
Confidence            35556666666665555556666666666666655555554443          4466777777777776664443334 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ++..+..|++.+......|..++..+..++.+.+.   ++..++..+..++..+...+.+++.+.+.-.+.....
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~---~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~  161 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEK---EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL  161 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889998888888999999999999988885   8888888889999999999988887766655544444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.93  E-value=0.0024  Score=60.56  Aligned_cols=115  Identities=23%  Similarity=0.304  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHH---------------HHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMR---------------EDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDK  111 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~---------------qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek  111 (312)
                      -|-+||+.--.-.+.|=.+|++|...+..++               .+|..+.+.|..+......+..+.+.-..++.+=
T Consensus         8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen    8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            3677888877778888888887776555444               4455555555555555556666666666777777


Q ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          112 IAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       112 ~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      -.|+|.+......+..++..++.++......+-+|-.+++.+..+|.-.+
T Consensus        88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~  137 (312)
T PF00038_consen   88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK  137 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            78889899999999999999999999999999999999999999986554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.87  E-value=0.0063  Score=60.90  Aligned_cols=165  Identities=18%  Similarity=0.262  Sum_probs=94.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHH--
Q 021465           53 AVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQ--  130 (312)
Q Consensus        53 ~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~--  130 (312)
                      +.-..|++.--.|-+-.....-.+++++..+|+||.++.....+++++    +..|.+...++|+++.++.+-.++|+  
T Consensus       105 ~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s  180 (499)
T COG4372         105 EAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQAS  180 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456777777777788888899999999999999999988888775    46788888888888887766666665  


Q ss_pred             --HHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465          131 --QAHIEAQSLAR-------ARQELTS---KIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN  198 (312)
Q Consensus       131 --q~r~e~q~L~~-------~rqeL~a---evq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el  198 (312)
                        |++.+.+.|..       .+++|..   .++...+||++..+-.|++.   ++|...-..+...--.|-.--..-.+.
T Consensus       181 ~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~---q~i~qrd~~i~q~~q~iaar~e~I~~r  257 (499)
T COG4372         181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTA---QAIQQRDAQISQKAQQIAARAEQIRER  257 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence              44444443332       2233322   24455555555554322221   222221111111111111111111223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          199 VEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       199 leq~qaMEknL~~marEvekLrAEIa  224 (312)
                      -+++|.+|..++-+.+|++.|++=..
T Consensus       258 e~~lq~lEt~q~~leqeva~le~yyQ  283 (499)
T COG4372         258 ERQLQRLETAQARLEQEVAQLEAYYQ  283 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33446666677777777776665444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.86  E-value=0.0067  Score=55.41  Aligned_cols=163  Identities=20%  Similarity=0.290  Sum_probs=91.3

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQS  138 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~  138 (312)
                      |..|-.-|++|+....+|++.+..+.+.-.+|...|.+++.    ++|.+-.-..+--+-=..++.||..+..+..+-++
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~----q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~   85 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRK----QLKSLQQALQKAKALEEELEDLKTLAKSLEEENRS   85 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466677777777777777777777777777776665553    33433211111111112234444444444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-------HHHHHH-HHHH------hhcHHhHHHHHH
Q 021465          139 LARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHR-------RLRATF-EYEK------GLNIDNVEQLQA  204 (312)
Q Consensus       139 L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq-------~~Raai-E~EK------k~~~elleq~qa  204 (312)
                      |.++...+-.+.|.|..+++..+.++   ..+.++.+.++..+.       .++.-+ +||.      ..-.+...++..
T Consensus        86 L~aq~rqlEkE~q~L~~~i~~Lqeen---~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e  162 (193)
T PF14662_consen   86 LLAQARQLEKEQQSLVAEIETLQEEN---GKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE  162 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            55555555555555555666555533   333444444443222       223222 3322      112334445588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          205 MEKNLVGMAREMEKLHAEVVNAEM  228 (312)
Q Consensus       205 MEknL~~marEvekLrAEIanaek  228 (312)
                      +.+-+.+...-.+.||.||...+.
T Consensus       163 L~~~ieEy~~~teeLR~e~s~LEe  186 (193)
T PF14662_consen  163 LKKTIEEYRSITEELRLEKSRLEE  186 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999998874

>PRK03918 chromosome segregation protein; Provisional

Probab=97.74  E-value=0.008  Score=64.44  Aligned_cols=75  Identities=25%  Similarity=0.444  Sum_probs=37.9

Q ss_pred             HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465          104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR  178 (312)
Q Consensus       104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr  178 (312)
                      ++..+.+...+++.++...+..+.++..++.+++.+...-+.+..++..+..++...+.++.++..+...++.+.
T Consensus       215 e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~  289 (880)
T PRK03918        215 ELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK  289 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555555555555555555555555555554444444444444333333

>PRK09039 hypothetical protein; Validated

Probab=97.67  E-value=0.005  Score=60.44  Aligned_cols=58  Identities=14%  Similarity=0.292  Sum_probs=35.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGM----AREMEKLHAEV  223 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~m----arEvekLrAEI  223 (312)
                      ++..|+++|++||..+..+.++|+.-++...+.-.+++.+++.|...    ..++++++.++
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~  199 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            55666666777776677666666665555555556665555555554    34566666666

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.63  E-value=0.015  Score=65.16  Aligned_cols=88  Identities=25%  Similarity=0.379  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHH
Q 021465          135 EAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAR  214 (312)
Q Consensus       135 e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~mar  214 (312)
                      ++..+.....++..++..++.++.....   .+..++.+++.++.++..+...+..-+....+.-.++...+.++..+..
T Consensus       829 ei~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~  905 (1163)
T COG1196         829 EIEELEEEIEELEEKLDELEEELEELEK---ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE  905 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344444444433332   3444445555555555555555555555555555555666666666666


Q ss_pred             HHHHHHHHHHH
Q 021465          215 EMEKLHAEVVN  225 (312)
Q Consensus       215 EvekLrAEIan  225 (312)
                      ++++++..+..
T Consensus       906 ~~~~~~~~~~~  916 (1163)
T COG1196         906 EIEKLRERLEE  916 (1163)
T ss_pred             HHHHHHHHHHH
Confidence            66666655554

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.63  E-value=0.0024  Score=62.02  Aligned_cols=110  Identities=22%  Similarity=0.267  Sum_probs=94.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLP-DLHAELDSLRQEHRRLRATFEYEKGLNIDN  198 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~-alraELe~LrqElq~~RaaiE~EKk~~~el  198 (312)
                      +..+.|+.+...+....+.+......|....+.++.++..+++-..++. ..+.+|+.+|+++......|+..++...++
T Consensus       156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el  235 (325)
T PF08317_consen  156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAEL  235 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888888888999999999999988887655554 556889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          199 VEQLQAMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       199 leq~qaMEknL~~marEvekLrAEIanaekr  229 (312)
                      -.+++..+..+.++..+..++.++|+++++.
T Consensus       236 ~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~  266 (325)
T PF08317_consen  236 QEELEELEEKIEELEEQKQELLAEIAEAEKI  266 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988843

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.59  E-value=0.017  Score=60.05  Aligned_cols=28  Identities=29%  Similarity=0.230  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAEMRG  230 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanaekra  230 (312)
                      +++.........+|++|..++..+++.-
T Consensus       360 ~~l~~~~e~~k~~ie~L~~el~~~e~~l  387 (546)
T PF07888_consen  360 QALQHSAEADKDEIEKLSRELQMLEEHL  387 (546)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4444445555568999999999888754

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK02224 chromosome segregation protein; Provisional

Probab=97.58  E-value=0.028  Score=60.52  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=26.6

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 021465           71 ASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR  141 (312)
Q Consensus        71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~  141 (312)
                      .....+++++..++.++..+...+..++.    ++..+.++...++..+..++.+..++..+..+++++..
T Consensus       206 ~~l~~~~~~l~el~~~i~~~~~~~~~l~~----~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~  272 (880)
T PRK02224        206 ERLNGLESELAELDEEIERYEEQREQARE----TRDEADEVLEEHEERREELETLEAEIEDLRETIAETER  272 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444333333322    23333333344444444444444444444444444333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=97.56  E-value=0.0039  Score=60.65  Aligned_cols=101  Identities=20%  Similarity=0.235  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      +.|+.|+.+++.-...+..-|++   ++..++.+|.....   ++...+.+++.+++++..++..|+.-++...+..+++
T Consensus       182 ~~L~~e~~~L~~~~~e~~~~d~~---eL~~lk~~l~~~~~---ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I  255 (312)
T smart00787      182 DALEEELRQLKQLEDELEDCDPT---ELDRAKEKLKKLLQ---EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI  255 (312)
T ss_pred             HHHHHHHHHHHHhHHHHHhCCHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555444444444444   44455566666654   7888889999999999999999999888888899998


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 021465          203 QAMEKNLVGMA----REMEKLHAEVVNAEMR  229 (312)
Q Consensus       203 qaMEknL~~ma----rEvekLrAEIanaekr  229 (312)
                      +..++.+..-.    .|+.+|++.+...++.
T Consensus       256 ~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      256 AEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            88888665543    4999999999988854

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.56  E-value=0.017  Score=59.69  Aligned_cols=45  Identities=20%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKN  166 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qq  166 (312)
                      +..++.||.+++.++++....-..|...+..|+.||.+.+.++..
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~  327 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER  327 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667778888888888877777777777777777777777765544

Several sequences in this family are described as being myosin heavy chain-like.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.54  E-value=0.0043  Score=60.24  Aligned_cols=35  Identities=11%  Similarity=0.265  Sum_probs=18.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      ..|...+..|++|...+...+..+......++..+
T Consensus       152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~  186 (325)
T PF08317_consen  152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERK  186 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555444444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.51  E-value=0.0042  Score=58.91  Aligned_cols=74  Identities=20%  Similarity=0.308  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV  199 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell  199 (312)
                      +.++.++..++.........++.|-.++..++++|.....   ....+...++.|+.|+.-++...+.|.+.-..++
T Consensus        78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~---~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~  151 (312)
T PF00038_consen   78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETL---ARVDLENQIQSLKEELEFLKQNHEEEIEELREQI  151 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            4455555555555555555555555555555555554443   3344445555555555555555555444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.50  E-value=0.077  Score=53.73  Aligned_cols=54  Identities=17%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhch
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTE  100 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae  100 (312)
                      -++.+|..+..+.+.|..+=..|..++-.++.+|..++.++..++..|.++...
T Consensus        49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~  102 (420)
T COG4942          49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR  102 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence            566666666666666666666666666666666666666666666666555443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.49  E-value=0.024  Score=58.96  Aligned_cols=79  Identities=23%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHH
Q 021465          132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG  211 (312)
Q Consensus       132 ~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~  211 (312)
                      ++.++......-.+|-+++..++..+.....   ++.-|++|...|+.+|.++|..++.|.-.+.+..-+.|.+...|.-
T Consensus       139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~---e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f  215 (546)
T KOG0977|consen  139 AREKLDDYLSRLSELEAEINTLKRRIKALED---ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF  215 (546)
T ss_pred             hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3444444444445556666666666666665   5566778888888888888888888887777777777777776666


Q ss_pred             HH
Q 021465          212 MA  213 (312)
Q Consensus       212 ma  213 (312)
                      |.
T Consensus       216 ~~  217 (546)
T KOG0977|consen  216 LK  217 (546)
T ss_pred             HH
Confidence            65

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.42  E-value=0.061  Score=54.77  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=12.2

Q ss_pred             cHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          195 NIDNVEQLQAMEKNLVGMAREMEKLHAE  222 (312)
Q Consensus       195 ~~elleq~qaMEknL~~marEvekLrAE  222 (312)
                      ..+..+.++..+.+|..+..+...+..+
T Consensus       374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke  401 (562)
T PHA02562        374 FVDNAEELAKLQDELDKIVKTKSELVKE  401 (562)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.42  E-value=0.012  Score=61.10  Aligned_cols=122  Identities=20%  Similarity=0.335  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 021465          102 DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEH  181 (312)
Q Consensus       102 e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqEl  181 (312)
                      +.+-|+|++++...|++-...+.+|..-.-++.|++++.+.-..+...-+.+.+.|++.+.   +++..-.|++.++++.
T Consensus       241 ~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~---Eie~kEeE~e~lq~~~  317 (581)
T KOG0995|consen  241 KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKS---EIEEKEEEIEKLQKEN  317 (581)
T ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            3456889999988888878888888777789999999999999999999999999999887   7778888899999999


Q ss_pred             HHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          182 RRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       182 q~~RaaiE~EKk~~~elleq~----qaMEknL~~marEvekLrAEIanae  227 (312)
                      ..++..|+.. +-..+.+++|    ...++++..+..++++|+.++=+.+
T Consensus       318 d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~  366 (581)
T KOG0995|consen  318 DELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK  366 (581)
T ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999888764 4444455544    5555555555555555555554433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.41  E-value=0.025  Score=66.12  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHH
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKD  128 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~E  128 (312)
                      .+++..-...+...-.-|-.|--+...|++++..+.-|+++.++.+..+....-.-=.-|.+.-.+.|.....++...++
T Consensus      1385 ~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e 1464 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRE 1464 (1930)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445555566666777777888888888888888776555444333222222333334444444556667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          129 LQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       129 L~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      +.+...+++++...=.++..++..++++-...+.++.++..-..+...-.+|++..+..++.++......++++
T Consensus      1465 ~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeEl 1538 (1930)
T KOG0161|consen 1465 LRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEEL 1538 (1930)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788888777777777777777777777776666666667777777777777777777665555555544

>PRK02224 chromosome segregation protein; Provisional

Probab=97.39  E-value=0.02  Score=61.64  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=10.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 021465          168 PDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       168 ~alraELe~LrqElq~~RaaiE  189 (312)
                      ..++.++..++.++..+++.++
T Consensus       380 ~~~~~~l~~l~~el~el~~~l~  401 (880)
T PRK02224        380 EDRREEIEELEEEIEELRERFG  401 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444445555555544443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.33  E-value=0.046  Score=64.05  Aligned_cols=30  Identities=23%  Similarity=0.191  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcHHhHHHHHH
Q 021465          175 DSLRQEHRRLRATFEYEKGLNIDNVEQLQA  204 (312)
Q Consensus       175 e~LrqElq~~RaaiE~EKk~~~elleq~qa  204 (312)
                      ..|..+++.-|++.....+.+.++-+++.+
T Consensus      1107 ~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1107 KELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444433333333344333333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=97.33  E-value=0.032  Score=51.47  Aligned_cols=101  Identities=26%  Similarity=0.347  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH--hcccchhHHHHHHHHHHHHHH
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA------------------RL--EVKNLPDLHAELDSLRQEHRR  183 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~------------------ka--d~qql~alraELe~LrqElq~  183 (312)
                      ....||...+.++.-|...-..|..++..|+.++...                  +.  .-..+..++.+++.|+.||..
T Consensus        70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~  149 (202)
T PF06818_consen   70 VCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR  149 (202)
T ss_pred             HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Confidence            3444555555555444444444444555555555443                  10  112355666677777766664


Q ss_pred             -------HHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 021465          184 -------LRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       184 -------~RaaiE~EKk~~~elleq~----qaMEknL~~marEvekLrAEIa  224 (312)
                             .+..|+.|+..-.+-=+.+    +.+..|++.|=+.-..|..++.
T Consensus       150 er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~  201 (202)
T PF06818_consen  150 ERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR  201 (202)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                   4446788888777766666    7888899999999888887763

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.32  E-value=0.06  Score=52.23  Aligned_cols=60  Identities=18%  Similarity=0.247  Sum_probs=26.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhc-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLN-IDNVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~-~elleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      ++...+++++.++.++..++..+...+... .+..+++...+.++.....+++.++..+.+
T Consensus       211 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~  271 (423)
T TIGR01843       211 ELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR  271 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444555555555555555443332222 222223344444444444455554444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09039 hypothetical protein; Validated

Probab=97.30  E-value=0.024  Score=55.67  Aligned_cols=132  Identities=18%  Similarity=0.260  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK  126 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk  126 (312)
                      +|.+.|..+..|+.+|-..=-.|+....--+.....++++|..|+..+..++++++. +...++..      ......+.
T Consensus        43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~-Le~~~~~~------~~~~~~~~  115 (343)
T PRK09039         43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSR-LQALLAEL------AGAGAAAE  115 (343)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh------hhhcchHH
Confidence            667777777777777643333366666666666777777777777766655555531 11111100      00111223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 021465          127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATF  188 (312)
Q Consensus       127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raai  188 (312)
                      ..+.++..++....+.-.+...+|+.|+++|+.++.   |+..+.++|+..++.....+..|
T Consensus       116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~---Qla~le~~L~~ae~~~~~~~~~i  174 (343)
T PRK09039        116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRR---QLAALEAALDASEKRDRESQAKI  174 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334443333334444445555555555554   45555555555554444444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.27  E-value=0.03  Score=60.61  Aligned_cols=148  Identities=17%  Similarity=0.210  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHH-----HHhhhhhHhhhhhHHHHHHHHHHH-------HHHHHH
Q 021465           72 SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLL-----DKIAKMEADCKAGERLKKDLQQAH-------IEAQSL  139 (312)
Q Consensus        72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~-----ek~~k~Eaelra~e~lk~EL~q~r-------~e~q~L  139 (312)
                      .+-.|+..|..++.||.+|+..+....++++--+.+|.     -+.+|..     ++.++.+|..-.       .+++-+
T Consensus       239 ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k-----~d~~~~eL~rk~~E~~~~qt~l~~~  313 (775)
T PF10174_consen  239 KIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSK-----MDRLKLELSRKKSELEALQTRLETL  313 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777899999998877766666644433333     3444421     344444444444       445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-------HHHHHHHHHH
Q 021465          140 ARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-------QAMEKNLVGM  212 (312)
Q Consensus       140 ~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-------qaMEknL~~m  212 (312)
                      ..+..++-.-+..++.+|.+.+.   .-.-|.++++.|+.++.+.-+.++...+...+.-+..       ..|.-.++.-
T Consensus       314 ~~~~~d~r~hi~~lkesl~~ke~---~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~  390 (775)
T PF10174_consen  314 EEQDSDMRQHIEVLKESLRAKEQ---EAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK  390 (775)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555553   4566777777777777777666665444444443333       2344444444


Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          213 AREMEKLHAEVVNAE  227 (312)
Q Consensus       213 arEvekLrAEIanae  227 (312)
                      .++|..|.+.|.|.+
T Consensus       391 e~ki~~Lq~kie~Le  405 (775)
T PF10174_consen  391 ERKINVLQKKIENLE  405 (775)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            556666666655544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=97.25  E-value=0.044  Score=58.36  Aligned_cols=145  Identities=19%  Similarity=0.240  Sum_probs=90.6

Q ss_pred             HHHHHHHHH-HHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           76 MREDLAAAQ-QEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS  154 (312)
Q Consensus        76 L~qeL~aaq-~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~  154 (312)
                      =.-+|.+-| +||++|......++-..-.|-.-|....+-||+.-++-.+-++|.+.+++-+-+-...|+.|-.-.|.--
T Consensus        63 qqaelis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~EL  142 (739)
T PF07111_consen   63 QQAELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQREL  142 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHH
Confidence            344777777 9999999988888777666666777777777777777777788888888777777778888866665555


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          155 EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       155 ~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEknL~~marEvekLrAEIanaekr  229 (312)
                      +++.+...         .+|..|.+.++..=+.+...-....+.+..+    -.-.++|....+|.+-|+.++..+...
T Consensus       143 ee~q~~Hq---------eql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~  212 (739)
T PF07111_consen  143 EEAQRLHQ---------EQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE  212 (739)
T ss_pred             HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            55555554         5666666555544333222111111111222    122355555556666666666655543

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>TIGR00606 rad50 rad50

Probab=97.24  E-value=0.031  Score=63.42  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH---HHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          145 ELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATF---EYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       145 eL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raai---E~EKk~~~elleq~qaMEknL~~marEvekLrA  221 (312)
                      +|-.++..+..+|...+.   .++.+..+.+.++.++.+++..+   .-++-...+.+.+.+..+..|.++..++++++.
T Consensus       826 ele~ei~~~~~el~~l~~---~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       826 QVNQEKQEKQHELDTVVS---KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555443   45556666666666666664443   333333444555557777888888888888877


Q ss_pred             HHHHHHH
Q 021465          222 EVVNAEM  228 (312)
Q Consensus       222 EIanaek  228 (312)
                      +|...+.
T Consensus       903 ~~~~~~~  909 (1311)
T TIGR00606       903 EIKDAKE  909 (1311)
T ss_pred             HHHHHHH
Confidence            7776653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=97.20  E-value=0.082  Score=56.80  Aligned_cols=42  Identities=21%  Similarity=0.426  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRI   90 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L   90 (312)
                      ++++..-..++..|..+=..+......+++.+..++.+++.|
T Consensus       192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l  233 (880)
T PRK03918        192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL  233 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=97.20  E-value=0.24  Score=48.39  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=34.5

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhH
Q 021465           61 RLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDS  103 (312)
Q Consensus        61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~  103 (312)
                      .|-.+|..|......++..-..++.|++.|+.....+.+.-|+
T Consensus        31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq   73 (310)
T PF09755_consen   31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQ   73 (310)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455788899999999999999999999999887776655533

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.15  E-value=0.11  Score=53.69  Aligned_cols=75  Identities=24%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          149 KIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       149 evq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIana  226 (312)
                      .+..++.||...+.   .|...+.|+..|+..+..+|..++.+|.....+-+..........++..++.+++.+|..+
T Consensus       282 ~l~s~~~ELe~ak~---~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~  356 (522)
T PF05701_consen  282 SLASAKKELEEAKK---ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA  356 (522)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence            36666666666665   4455555555555555555555555555555555555555555555555555555555443

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.12  E-value=0.071  Score=51.73  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=36.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhcH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          167 LPDLHAELDSLRQEHRRLRATFEYEKGLNI-DNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       167 l~alraELe~LrqElq~~RaaiE~EKk~~~-elleq~qaMEknL~~marEvekLrAEIanaekr  229 (312)
                      +..++.++..++.++..+++.++.-+.... .........+..+.....++.++++++..++.+
T Consensus       205 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~  268 (423)
T TIGR01843       205 RAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDR  268 (423)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555443222222 222223556667778888888888888887754

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.12  E-value=0.072  Score=50.29  Aligned_cols=32  Identities=22%  Similarity=0.144  Sum_probs=16.5

Q ss_pred             hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          115 MEADCKAGERLKKDLQQAHIEAQSLARARQEL  146 (312)
Q Consensus       115 ~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL  146 (312)
                      +++--.+.+.++.++-+...+++++......+
T Consensus        47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~   78 (239)
T COG1579          47 LEALEIELEDLENQVSQLESEIQEIRERIKRA   78 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344456666666666666655444433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.11  E-value=0.11  Score=56.67  Aligned_cols=77  Identities=21%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHH
Q 021465          138 SLARARQELTSKIQQASEALH----KARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMA  213 (312)
Q Consensus       138 ~L~~~rqeL~aevq~l~~EL~----r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~ma  213 (312)
                      .+.....+|-.++..+.++..    +.+...+.++.+++|+..+.-|++.++..+..-...++.++.++....++-|...
T Consensus       463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~  542 (980)
T KOG0980|consen  463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA  542 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            333344444444444444443    3344556678888888888888888888777766677777777766555555544


Q ss_pred             H
Q 021465          214 R  214 (312)
Q Consensus       214 r  214 (312)
                      .
T Consensus       543 ~  543 (980)
T KOG0980|consen  543 A  543 (980)
T ss_pred             H
Confidence            4

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.09  E-value=0.16  Score=51.75  Aligned_cols=92  Identities=11%  Similarity=0.137  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcH---HhHHHH----HHHHHHH
Q 021465          137 QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNI---DNVEQL----QAMEKNL  209 (312)
Q Consensus       137 q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~---elleq~----qaMEknL  209 (312)
                      ..|.....+|-.++..+...+...+....++..+...+..+++++...+.+++.-+....   ..++++    ...+..|
T Consensus       302 ~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l  381 (562)
T PHA02562        302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL  381 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence            333344444444444444444433333333444444444444444444444433222111   111111    2233445


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          210 VGMAREMEKLHAEVVNAEM  228 (312)
Q Consensus       210 ~~marEvekLrAEIanaek  228 (312)
                      .....+++++..++...++
T Consensus       382 ~~l~~~l~~~~~~~~~~~k  400 (562)
T PHA02562        382 AKLQDELDKIVKTKSELVK  400 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.09  E-value=0.11  Score=60.04  Aligned_cols=160  Identities=17%  Similarity=0.194  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHH--HHHhhh-----------hhHhh----hhhHHHHHHHHHH
Q 021465           70 AASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVL--LDKIAK-----------MEADC----KAGERLKKDLQQA  132 (312)
Q Consensus        70 a~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L--~ek~~k-----------~Eael----ra~e~lk~EL~q~  132 (312)
                      ..+|..|+++...+++.++.+...+.++.-=.  +.|..  |+...+           ++..+    +..+.++.++.+.
T Consensus       934 p~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qa 1011 (1486)
T PRK04863        934 PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVV--QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQA 1011 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888877655443222  11111  111111           11111    1123344445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNL---------PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ  203 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql---------~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q  203 (312)
                      +.+.++....-..+...++.+.+.+...+.++++|         ..++..-+.|.+.|...|+...+--+.....-.+++
T Consensus      1012 q~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe 1091 (1486)
T PRK04863       1012 QAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMD 1091 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555566666666666666666555         223334477888888888887777777777778889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          204 AMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       204 aMEknL~~marEvekLrAEIanaekra~  231 (312)
                      .++++|....++...++.+|.++..++-
T Consensus      1092 ~L~kkL~~~~~e~~~~re~I~~aK~~W~ 1119 (1486)
T PRK04863       1092 NLTKKLRKLERDYHEMREQVVNAKAGWC 1119 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998876543

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.08  E-value=0.043  Score=58.81  Aligned_cols=18  Identities=22%  Similarity=0.311  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          170 LHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       170 lraELe~LrqElq~~Raa  187 (312)
                      +|.....|..|+.++|..
T Consensus       543 ~r~r~~~lE~E~~~lr~e  560 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRE  560 (697)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444555555554

; GO: 0016021 integral to membrane

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=97.08  E-value=0.097  Score=51.06  Aligned_cols=38  Identities=21%  Similarity=0.434  Sum_probs=33.2

Q ss_pred             HH-HhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465           58 EI-ERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIR   95 (312)
Q Consensus        58 Ei-~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~   95 (312)
                      .| +.|+..|+-|......|+++|.++.+.|..|++.+.
T Consensus        83 ~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~  121 (306)
T PF04849_consen   83 RIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELS  121 (306)
T ss_pred             HHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35 899999999999999999999999999998887543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.05  E-value=0.089  Score=58.04  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=22.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhh---hHHHHHHHHHHHHHHhHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAA---SHITMREDLAAAQQEIPRI   90 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~---th~~L~qeL~aaq~Elq~L   90 (312)
                      -++.+|.++..|+..|-.+=+-|-+   -.-.|+++|.-.++||--+
T Consensus       681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~  727 (1174)
T KOG0933|consen  681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALL  727 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555444332222222   2234667777776666444

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=97.05  E-value=0.12  Score=43.98  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=16.3

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      +..|-.+.+++-.........+..++.||.....
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~   38 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAK   38 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444555555555555444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=97.01  E-value=0.014  Score=49.61  Aligned_cols=58  Identities=28%  Similarity=0.346  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHR  182 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq  182 (312)
                      +..|+..++.++.+|...|..+..++-.++.+.+..++..++++.++.+++.|++.++
T Consensus        28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~   85 (120)
T PF12325_consen   28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457778888888899999999999999888888887766666666666666664443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.01  E-value=0.12  Score=57.26  Aligned_cols=155  Identities=15%  Similarity=0.244  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhh---chhhHHHHHHHHHhhhhhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNIH---TESDSHIRVLLDKIAKMEAD----CKAGERLKKDLQQAHIEAQSLARARQE  145 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~~---ae~e~qiR~L~ek~~k~Eae----lra~e~lk~EL~q~r~e~q~L~~~rqe  145 (312)
                      ....++.+..+++.+......+..++   +|.|.++-++.+-.--+..+    ...++.+|.+..+++.++..-.+.-+.
T Consensus       290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~  369 (1074)
T KOG0250|consen  290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK  369 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666666   55666665555544333333    344555566666666665555555556


Q ss_pred             HHHHHHHHHHHHHHHHHhc-c----cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKARLEV-K----NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH  220 (312)
Q Consensus       146 L~aevq~l~~EL~r~kad~-q----ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr  220 (312)
                      +-..+..+.+.|...+.+. +    +++....+++.|++|++.++..+..-+....+..+....++.++.....++-.|+
T Consensus       370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~  449 (1074)
T KOG0250|consen  370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR  449 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            6666666666665555433 2    2233334445555555555554444455555555555555555555555555555


Q ss_pred             HHHHHHH
Q 021465          221 AEVVNAE  227 (312)
Q Consensus       221 AEIanae  227 (312)
                      ..|.+..
T Consensus       450 k~i~~~~  456 (1074)
T KOG0250|consen  450 KKIENIS  456 (1074)
T ss_pred             HHHHHHH
Confidence            5555433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.00  E-value=0.071  Score=55.59  Aligned_cols=101  Identities=18%  Similarity=0.281  Sum_probs=61.7

Q ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhh----hhhHHHHHHHHHH
Q 021465           57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADC----KAGERLKKDLQQA  132 (312)
Q Consensus        57 ~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eael----ra~e~lk~EL~q~  132 (312)
                      .||.+|-.|+--|........+++..+..++......+..+++|-    --+--++.+||.++    +.+..|..+|..+
T Consensus       113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~----~~~krr~~~le~e~~~Lk~en~rl~~~l~~~  188 (546)
T KOG0977|consen  113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI----NTLKRRIKALEDELKRLKAENSRLREELARA  188 (546)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            344444444444444444444444455555554444444444443    34555566666554    4566777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      |..+..=...|.++..++|.|.++|+-.+
T Consensus       189 r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  189 RKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            77777777888888999999999986655

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=96.97  E-value=0.11  Score=49.73  Aligned_cols=120  Identities=15%  Similarity=0.250  Sum_probs=86.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021465           65 DNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQ  144 (312)
Q Consensus        65 dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rq  144 (312)
                      +.+.-..-|..++|....+++||.....--+.+.+|-|.|+-.+..+..+++++.   +.|+-|++-.+   .++..++-
T Consensus        14 E~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~n---qrl~~E~e~~K---ek~e~q~~   87 (333)
T KOG1853|consen   14 EDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRN---QRLTTEQERNK---EKQEDQRV   87 (333)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHH
Confidence            3445555688899999999999999999999999999999999999999999764   45665555433   22333344


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465          145 ELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       145 eL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~  190 (312)
                      +.-.++-.|..||...++-..++-.-..||++....|++++.+..|
T Consensus        88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~  133 (333)
T KOG1853|consen   88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIY  133 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhh
Confidence            4444566777777777764445555556777777777777766444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.94  E-value=0.23  Score=45.44  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASH   73 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th   73 (312)
                      -|...|...+.+++.|..||+-|..-.
T Consensus        16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq   42 (194)
T PF15619_consen   16 ELQNELAELQRKLQELRKENKTLKQLQ   42 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888999999999998776543

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=96.92  E-value=0.15  Score=51.36  Aligned_cols=63  Identities=10%  Similarity=0.192  Sum_probs=33.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHh--------hcHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKG--------LNIDNVEQL-----QAMEKNLVGMAREMEKLHAEVVNAEM  228 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk--------~~~elleq~-----qaMEknL~~marEvekLrAEIanaek  228 (312)
                      .+..++.+++.++.++..++..+..-+.        .....+.++     .....+++....++..+++++..++.
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~  312 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE  312 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666665443110        011122222     35566666666677777777766553

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.87  E-value=0.4  Score=52.16  Aligned_cols=180  Identities=18%  Similarity=0.253  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhH----
Q 021465           48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGE----  123 (312)
Q Consensus        48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e----  123 (312)
                      ++-.|.--..||..|-+...-+..++...++.|..++.+|.+...+...+++|.|.-.-.|.+|..-++.--..++    
T Consensus       292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe  371 (775)
T PF10174_consen  292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE  371 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566667888888888888888888888888888888888888888888776655555555444433222222    


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          124 ----------RLKKDLQQAHIEAQSLARARQELT----SKIQQASEALHKA--RLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       124 ----------~lk~EL~q~r~e~q~L~~~rqeL~----aevq~l~~EL~r~--kad~qql~alraELe~LrqElq~~Raa  187 (312)
                                .|+..+.....++..|..--..|.    .+-..+..+..+.  ++|......+...|+....|.++.+..
T Consensus       372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~  451 (775)
T PF10174_consen  372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER  451 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence                      233333333333333333211111    2222222222222  345555566667777777777777777


Q ss_pred             HHHHHhhc-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          188 FEYEKGLN-IDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       188 iE~EKk~~-~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++..+... .+..+++..+.+.+.....+++.|..++...+
T Consensus       452 l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~  492 (775)
T PF10174_consen  452 LEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKE  492 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            66443222 34556667777777777777777777766544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.87  E-value=0.34  Score=53.72  Aligned_cols=102  Identities=24%  Similarity=0.277  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHh--hcHHhHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKG--LNIDNVE  200 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk--~~~elle  200 (312)
                      +.++.-|..-..|+-+|.+...+|..+++....-+.....   +++.|.+.+-.+..|-.++-..|-.-+-  .+..+++
T Consensus       491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~---k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE  567 (1195)
T KOG4643|consen  491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSN---KLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE  567 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5555555555566666777777777777776666665553   5666666666666555555555554444  4444555


Q ss_pred             HH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          201 QL-----------QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       201 q~-----------qaMEknL~~marEvekLrAEIanae  227 (312)
                      |.           +.|=..|.++.++-++|+.+|.|.+
T Consensus       568 q~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQq  605 (1195)
T KOG4643|consen  568 QNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQ  605 (1195)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44           6666777888889999999987765

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.86  E-value=0.4  Score=46.58  Aligned_cols=131  Identities=18%  Similarity=0.287  Sum_probs=75.2

Q ss_pred             HHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           79 DLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGER---LKKDLQQAHIEAQSLARARQELTSKIQQASE  155 (312)
Q Consensus        79 eL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~---lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~  155 (312)
                      ++-+.+.+|++|--......... ..=+.|+.++..++.++...+.   ...++..+.+++..|.....++..+++.+.+
T Consensus       108 ~~~~ler~i~~Le~~~~T~~L~~-e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~  186 (294)
T COG1340         108 SIKSLEREIERLEKKQQTSVLTP-EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELAN  186 (294)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666544322211111 1235677777777777755553   3455566667777777777777777777777


Q ss_pred             HHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHH
Q 021465          156 ALHKARLEV----KNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLV  210 (312)
Q Consensus       156 EL~r~kad~----qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~  210 (312)
                      +......+.    +.+..+|.+.+.|..++...+..++............+..+++-+.
T Consensus       187 eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik  245 (294)
T COG1340         187 EAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK  245 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            776655421    2345566666666666666666666555555555555544444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.85  E-value=0.076  Score=55.29  Aligned_cols=30  Identities=10%  Similarity=0.338  Sum_probs=16.4

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           72 SHITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      +|..+..+|...+..|......+..++-+.
T Consensus       250 ~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~  279 (569)
T PRK04778        250 DHLDIEKEIQDLKEQIDENLALLEELDLDE  279 (569)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            344555566666666666555555554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.83  E-value=0.053  Score=52.88  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=91.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 021465          119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPD-LHAELDSLRQEHRRLRATFEYEKGLNID  197 (312)
Q Consensus       119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~a-lraELe~LrqElq~~RaaiE~EKk~~~e  197 (312)
                      .+..+.|+.+...+..+++.+....-+|....+.++.++..++.-..++.. ...|+..+|.++...-..++..++...+
T Consensus       150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e  229 (312)
T smart00787      150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE  229 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677788888888888888888888888888899888888753333322 3568889998888888889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          198 NVEQLQAMEKNLVGMAREMEKLHAEVVNAEM  228 (312)
Q Consensus       198 lleq~qaMEknL~~marEvekLrAEIanaek  228 (312)
                      +-++++..+..+.+...+..+++.+|+.+++
T Consensus       230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      230 LEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.81  E-value=0.16  Score=53.53  Aligned_cols=144  Identities=20%  Similarity=0.311  Sum_probs=82.7

Q ss_pred             CCchhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH---HHHHhHHHHHHhhhhhchhhHHHH----HHHHHh---
Q 021465           43 EPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAA---AQQEIPRIKAHIRNIHTESDSHIR----VLLDKI---  112 (312)
Q Consensus        43 ~p~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~a---aq~Elq~L~~~~~~~~ae~e~qiR----~L~ek~---  112 (312)
                      +|.|+|.. ++....-++....+|++|..+.+.+..+|+.   .+-.++.|...++......+..|+    ....+.   
T Consensus       101 DP~pll~s-a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~  179 (629)
T KOG0963|consen  101 DPVPLLAS-AAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQE  179 (629)
T ss_pred             CCchHHHH-HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45553332 3334444555788888888888888877664   455677777766666666666666    222222   


Q ss_pred             -hhhhHhh-hhhHHHHHHHHHHHHHHHHHHHH---------------HHH---HHHHHHHHHHHHHHHHHhcccchhHHH
Q 021465          113 -AKMEADC-KAGERLKKDLQQAHIEAQSLARA---------------RQE---LTSKIQQASEALHKARLEVKNLPDLHA  172 (312)
Q Consensus       113 -~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~---------------rqe---L~aevq~l~~EL~r~kad~qql~alra  172 (312)
                       +.-|++| .....+...+.++...+.+|.+.               +++   ..++|-.++.+|++++.   .|..+.+
T Consensus       180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~---ri~~lE~  256 (629)
T KOG0963|consen  180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQ---RIVFLER  256 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence             2223333 22344455555555555554211               222   34556667777777774   7777777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          173 ELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       173 ELe~LrqElq~~RaaiE~  190 (312)
                      |.+.|+.++.......+.
T Consensus       257 e~e~L~~ql~~~N~~~~~  274 (629)
T KOG0963|consen  257 EVEQLREQLAKANSSKKL  274 (629)
T ss_pred             HHHHHHHHHHhhhhhhhh
Confidence            887777666655554443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.80  E-value=0.35  Score=48.83  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=13.3

Q ss_pred             CCCCCcccccccccCCCCCCCCC
Q 021465          258 VDGYSQPLLQMGVVQTGEGMIPY  280 (312)
Q Consensus       258 ~~~Yg~~~~~~~~~~~~~~~~p~  280 (312)
                      |--|...-.-+|+|-.|+.-||+
T Consensus       364 Greyv~rv~sagnyv~ger~i~~  386 (499)
T COG4372         364 GREYVTRVTSAGNYVTGERLIPR  386 (499)
T ss_pred             CCCeeEeecccCcccccchhhHH
Confidence            33455544466666666666664

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.80  E-value=0.21  Score=52.93  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=17.4

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      ++....+|+.|..-....+..|..++..++++..
T Consensus       103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e  136 (617)
T PF15070_consen  103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQE  136 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555554444445555555555555544

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.79  E-value=0.25  Score=54.99  Aligned_cols=133  Identities=16%  Similarity=0.269  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhh-------hHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhh
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAA-------SHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKME  116 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~-------th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~E  116 (312)
                      ..+++...-+.+|.....-+..+..       ....++.+..+...|+..++....+++-+.   +.++++..-   .+.
T Consensus       292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n---~i~  368 (1074)
T KOG0250|consen  292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN---SIR  368 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            3566667777777777766666553       333344444444555555555555444432   222222222   222


Q ss_pred             HhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465          117 ADCKAGERLKKDLQQAHIEA-QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR  185 (312)
Q Consensus       117 aelra~e~lk~EL~q~r~e~-q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~R  185 (312)
                      +.-+..+.+++.+..++.+. +.+...+.++-.++..|.+++++.+.   ++..|+.+++.++.++...+
T Consensus       369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~~~~~  435 (1074)
T KOG0250|consen  369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKAKEEE  435 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhH
Confidence            23344455555666666555 66666666777777777777776665   56666666666654444333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.76  E-value=0.14  Score=56.44  Aligned_cols=165  Identities=15%  Similarity=0.145  Sum_probs=72.6

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHH
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIE  135 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e  135 (312)
                      .=.++.+|+|+-.+..    ++.+.  ++..+-.-+..++.|+   +..++.|.+++-.+--.+-..+-+-+.|...+.+
T Consensus       374 alkllLEnrrlt~tle----elqss--s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ek  447 (1195)
T KOG4643|consen  374 ALKLLLENRRLTGTLE----ELQSS--SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEK  447 (1195)
T ss_pred             HHHHHHHhHHHHHHHH----HHhhh--hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777888777773    33333  5555555555555554   4556666666655543333333333333322222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHH
Q 021465          136 AQSLARARQELTSKIQQASEALHKARLEV----KNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG  211 (312)
Q Consensus       136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~----qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~  211 (312)
                      ++.=..-.+.-+++-+.++.++.+.-.+.    ++++.++..|..+.+=|....-.+..-.....++.+|.+++...+..
T Consensus       448 l~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~  527 (1195)
T KOG4643|consen  448 LLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYEL  527 (1195)
T ss_pred             HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222222222222222222111    12233333333333322222222222333334455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 021465          212 MAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       212 marEvekLrAEIanaekr  229 (312)
                      .....+.|++.+-+.+.+
T Consensus       528 ~~~k~eeLe~~l~~lE~E  545 (1195)
T KOG4643|consen  528 LSNKLEELEELLGNLEEE  545 (1195)
T ss_pred             HHHHHHHHHHHHhhHHHH
Confidence            555666666666555543

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.74  E-value=0.13  Score=53.64  Aligned_cols=158  Identities=19%  Similarity=0.299  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHH----------HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhh
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHI----------TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKME  116 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~----------~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~E  116 (312)
                      -|++-...+.-+|.+|-..|..|-.-..          .||..-+++|.|+++..+           .+-.+..|...|+
T Consensus       225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-----------y~~~~~~k~~~~~  293 (581)
T KOG0995|consen  225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-----------YVSQMKSKKQHME  293 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-----------HHHHHHhhhHHHH
Confidence            5566666677788888888888765443          344455555555555555           5666777777766


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 021465          117 ADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNI  196 (312)
Q Consensus       117 aelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~  196 (312)
                      .   .++.|+.|++....|+++|.....+|-.++....  +   -  ..+++.+..|.+.|.+++......++...|.-.
T Consensus       294 ~---~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~--i---S--~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw  363 (581)
T KOG0995|consen  294 K---KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG--I---S--GEDVERMNLERNKLKRELNKIQSELDRLSKEVW  363 (581)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   4466888888888888888877777766664431  1   0  122333444444444444444444444333332


Q ss_pred             HhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          197 DNVE----QLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       197 elle----q~qaMEknL~~marEvekLrAEIan  225 (312)
                      ++=-    ..+..++.++....-+.+|.--|++
T Consensus       364 ~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~  396 (581)
T KOG0995|consen  364 ELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAE  396 (581)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222    2255566666666666666555443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.19  Score=54.47  Aligned_cols=85  Identities=14%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTS  148 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~a  148 (312)
                      |-+..-.|.++|.+++.-+|.|..-+.+++...--+--++..-....|-.+..+..|++.|.+....+++|.-.+|+|-.
T Consensus       435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~  514 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH  514 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            55666678889999999999999888898888877777777666666777777777888888888888888888887777


Q ss_pred             HHHHH
Q 021465          149 KIQQA  153 (312)
Q Consensus       149 evq~l  153 (312)
                      +++..
T Consensus       515 qlkq~  519 (1118)
T KOG1029|consen  515 QLKQK  519 (1118)
T ss_pred             HHHHh
Confidence            76654

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=96.72  E-value=0.062  Score=45.72  Aligned_cols=95  Identities=21%  Similarity=0.266  Sum_probs=76.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465          119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN  198 (312)
Q Consensus       119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el  198 (312)
                      ...++.|...|.+...|+..|...-..|..+-..+++||-+.-.++..+.+...++..|++++..++..++.-....=+.
T Consensus        15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK   94 (120)
T PF12325_consen   15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK   94 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            45678899999999999999999999999999999999999998888888888899999999999888877755555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          199 VEQLQAMEKNLVGMA  213 (312)
Q Consensus       199 leq~qaMEknL~~ma  213 (312)
                      .|++..++.++..|.
T Consensus        95 ~E~veEL~~Dv~DlK  109 (120)
T PF12325_consen   95 SEEVEELRADVQDLK  109 (120)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555554454444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.72  E-value=0.33  Score=53.70  Aligned_cols=108  Identities=14%  Similarity=0.288  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhhhhhhhh-------hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHh--
Q 021465           51 KIAVQAAEIERLARDNHR-------LAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEAD--  118 (312)
Q Consensus        51 ~l~~q~~Ei~~L~~dNqr-------La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eae--  118 (312)
                      .|..+..+|..|..+=|+       +-..|..|++++.....|..++...+....-+-   ...++.+.++..-.|++  
T Consensus       693 ~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~  772 (1200)
T KOG0964|consen  693 EIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELG  772 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            344444445444444444       455666666777666666666655433222211   23334444444444444  


Q ss_pred             -----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          119 -----------CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH  158 (312)
Q Consensus       119 -----------lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~  158 (312)
                                 +..+.+|..++.+++.+...+...|-++.+....+.-.|.
T Consensus       773 sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~  823 (1200)
T KOG0964|consen  773 SELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN  823 (1200)
T ss_pred             HHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       3344556667777777777777777777666666666553

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=96.69  E-value=0.22  Score=44.39  Aligned_cols=15  Identities=20%  Similarity=0.386  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          213 AREMEKLHAEVVNAE  227 (312)
Q Consensus       213 arEvekLrAEIanae  227 (312)
                      ..++..||++|++..
T Consensus       137 ~~ei~~lr~~iE~~K  151 (177)
T PF07798_consen  137 DTEIANLRTEIESLK  151 (177)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345566666666544

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.66  E-value=0.28  Score=55.19  Aligned_cols=31  Identities=19%  Similarity=0.271  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          131 QAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      +++.++.+....+.++...+..++.++.-++
T Consensus       606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~  636 (1317)
T KOG0612|consen  606 KLRSELEKERRQRTEISEIIAELKEEISSLE  636 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3444444444444444444444444443333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.65  E-value=0.45  Score=55.70  Aligned_cols=183  Identities=16%  Similarity=0.216  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH-------HHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhH--
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMRE-------DLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA--  117 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~q-------eL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Ea--  117 (312)
                      .|++-|..-.+|+..|..-|+-|-.++..-++       +|.++..-+.++.+-+..++.|+  .++...++.++-|-  
T Consensus       693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~--~ll~~t~~rL~~e~~~  770 (1822)
T KOG4674|consen  693 NLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEK--LLLKETEERLSQELEK  770 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            45555555666666666666666655544333       44444455555555555555555  33333333333221  


Q ss_pred             hhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          118 DCKAGERLKKDLQQAH----IEAQSLARARQELTSKIQQASEALHKARLEVKNL-PDLHAELDSLRQEHRRLRATFEYEK  192 (312)
Q Consensus       118 elra~e~lk~EL~q~r----~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql-~alraELe~LrqElq~~RaaiE~EK  192 (312)
                      -......++..|..++    .--+...+.++.+-.++..|..+|++++.++++- ..++.-...+...+..++..|+.++
T Consensus       771 l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~  850 (1822)
T KOG4674|consen  771 LSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELE  850 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            1111111111111111    0111122333334444444444444444322211 2222223444567777777788888


Q ss_pred             hhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          193 GLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       193 k~~~elleq~qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      +.+...+.++.....++..+..++..|..+|...+.+..
T Consensus       851 ~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~  889 (1822)
T KOG4674|consen  851 SELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLL  889 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            888888888888888888888888888888887765544

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.60  E-value=0.43  Score=54.04  Aligned_cols=17  Identities=35%  Similarity=0.675  Sum_probs=6.8

Q ss_pred             HhcccchhHHHHHHHHH
Q 021465          162 LEVKNLPDLHAELDSLR  178 (312)
Q Consensus       162 ad~qql~alraELe~Lr  178 (312)
                      .++.++|.++.+++.++
T Consensus       349 ~~~~~l~~~~~~~~~l~  365 (1201)
T PF12128_consen  349 ARVDQLPEWRNELENLQ  365 (1201)
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            33333444444444443

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=96.60  E-value=1  Score=45.95  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             hhchhhHHHHHHHHHhhhhhHh--hhhh--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 021465           97 IHTESDSHIRVLLDKIAKMEAD--CKAG--ERLKKDLQQAH--------IEAQSLARARQELTSKIQQASEALHKA----  160 (312)
Q Consensus        97 ~~ae~e~qiR~L~ek~~k~Eae--lra~--e~lk~EL~q~r--------~e~q~L~~~rqeL~aevq~l~~EL~r~----  160 (312)
                      +..|.|-++-.|+.|+.|+|.+  ++.+  +.||.|..|+.        +-+.+|-.--+.|-.+..-|.+.|+.-    
T Consensus       152 leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p  231 (552)
T KOG2129|consen  152 LEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTP  231 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            4567788899999999999876  3444  56665555442        111222222222222222222222110    


Q ss_pred             --HHhcc--------cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHH
Q 021465          161 --RLEVK--------NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL  209 (312)
Q Consensus       161 --kad~q--------ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL  209 (312)
                        -.|+.        .-.+++.-|+.|+.|++|+|..+-.-.|.+.+.+.|..+=|+++
T Consensus       232 ~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~  290 (552)
T KOG2129|consen  232 SLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDH  290 (552)
T ss_pred             CchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence              01111        12456778888999999999888877777777777664444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.56  E-value=0.18  Score=52.54  Aligned_cols=177  Identities=15%  Similarity=0.289  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHH----hhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-hHHHHHHHHHhhh----hhHhh
Q 021465           49 EDKIAVQAAEIE----RLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-DSHIRVLLDKIAK----MEADC  119 (312)
Q Consensus        49 E~~l~~q~~Ei~----~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-e~qiR~L~ek~~k----~Eael  119 (312)
                      ...+-.|-.|++    .+..++  ..-.|..+..+|...++.|..+...+..+.-+. +..+..+.+++-.    ||.|+
T Consensus       221 ~~~~P~ql~eL~~gy~~m~~~g--y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~  298 (560)
T PF06160_consen  221 QKEFPDQLEELKEGYREMEEEG--YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEV  298 (560)
T ss_pred             HHHhHHHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444544443    333333  444567777788888888887777777666554 3333333333333    47788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV  199 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell  199 (312)
                      .+...++..+..+...+..+....+.|..++..+.+--.=...|....-.+..+|+.+...+......++..+..+....
T Consensus       299 ~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~  378 (560)
T PF06160_consen  299 EAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQ  378 (560)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            88888888888888888888888888888888777654333334445566777788888888888888877777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      +.++.+.++|.....+..++...|.+..
T Consensus       379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~  406 (560)
T PF06160_consen  379 EELEEIEEQLEEIEEEQEEINESLQSLR  406 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766666666666666665555544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.51  E-value=0.23  Score=57.93  Aligned_cols=144  Identities=21%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK  126 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk  126 (312)
                      +|=.....-..++.-+-.||.||...+..+.+.+..++..|-..++-- ..-+..+.+.-++..+..-|-...-.+--||
T Consensus      1157 ~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-q~~a~s~~e~~~i~~~v~~vNll~EsN~~LR 1235 (1822)
T KOG4674|consen 1157 FLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS-QKSAVSDDEHKEILEKVEEVNLLRESNKVLR 1235 (1822)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHHHHHHHHhHHHHH
Confidence            444455555666777888899999999888888888888887776532 1122333344444444444432223333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465          127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQ  201 (312)
Q Consensus       127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq  201 (312)
                      .++...-..+       ++|..++..+..+|...+.   .+..+++++....+|+..++...+.=|+-+++++++
T Consensus      1236 ee~~~~~~k~-------qEl~~~i~kl~~el~plq~---~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1236 EENEANLEKI-------QELRDKIEKLNFELAPLQN---ELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHhhHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322222       3444444444444444443   334444444444444444444444444444444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.50  E-value=0.85  Score=51.69  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~  190 (312)
                      .++.+++.++....-|.+.=+++..++..+.+.|.....  .++...+++++.++.++...+..++.
T Consensus       356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~  420 (1201)
T PF12128_consen  356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFN--RQQERLQAQQDEIREEKAERREQIEE  420 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555544443  34555556666666555555554443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.45  E-value=0.058  Score=52.48  Aligned_cols=122  Identities=13%  Similarity=0.167  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA  153 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l  153 (312)
                      ..|+.++..++.|.+........++.                      .+....+..++..++++|.....+|..++..+
T Consensus        12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~----------------------~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~L   69 (314)
T PF04111_consen   12 EQLDKQLEQAEKERDTYQEFLKKLEE----------------------ESDSEEDIEELEEELEKLEQEEEELLQELEEL   69 (314)
T ss_dssp             ----------------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh----------------------cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666665555444441                      12233444555555555555555666666665


Q ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          154 SEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       154 ~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      .++-+....          ||..++.|...+...-+...+.++.+.-++..+++..+++..+++....+|.+..
T Consensus        70 E~e~~~l~~----------el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen   70 EKEREELDQ----------ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555442          3333333333333332233333344444444555555555666666655555444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.42  E-value=0.73  Score=51.86  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          134 IEAQSLARARQELTSKIQQASEALHK  159 (312)
Q Consensus       134 ~e~q~L~~~rqeL~aevq~l~~EL~r  159 (312)
                      .|+.=|...-..++.++..++..|..
T Consensus       507 sel~~L~~~~~~~~~~~e~lk~~L~~  532 (1293)
T KOG0996|consen  507 SELDILLSRHETGLKKVEELKGKLLA  532 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.39  E-value=0.69  Score=45.26  Aligned_cols=30  Identities=17%  Similarity=0.164  Sum_probs=16.3

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465           61 RLARDNHRLAASHITMREDLAAAQQEIPRI   90 (312)
Q Consensus        61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L   90 (312)
                      .|...|..|......-...+.-++|||..-
T Consensus        94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~~k  123 (306)
T PF04849_consen   94 DLSERNEALEEQLGAALEQVEQLRHELSMK  123 (306)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=96.38  E-value=0.3  Score=45.37  Aligned_cols=20  Identities=15%  Similarity=0.375  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHH
Q 021465           73 HITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~   92 (312)
                      ...++.+|..++.+...|..
T Consensus        22 L~~~~~~l~~~~~~~~~l~~   41 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRR   41 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.38  E-value=0.12  Score=45.72  Aligned_cols=32  Identities=19%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIH   98 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~   98 (312)
                      .++......+++.|..+++|+..+...+.++.
T Consensus        77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~  108 (191)
T PF04156_consen   77 PRLQGELSELQQQLQQLQEELDQLQERIQELE  108 (191)
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666666666666433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.37  E-value=0.41  Score=41.82  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=10.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 021465          168 PDLHAELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       168 ~alraELe~LrqElq~~RaaiE~  190 (312)
                      ..++.|-+.|-++++..+..|..
T Consensus        76 ~~l~sEk~~L~k~lq~~q~kv~e   98 (140)
T PF10473_consen   76 DTLRSEKENLDKELQKKQEKVSE   98 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.36  E-value=1  Score=52.31  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanae  227 (312)
                      +.++..+.++.+++..+.+.+....
T Consensus       452 ee~e~qL~elE~kL~~lea~leql~  476 (1486)
T PRK04863        452 QEATEELLSLEQKLSVAQAAHSQFE  476 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555554433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.35  E-value=0.67  Score=49.28  Aligned_cols=59  Identities=14%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             hhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           97 IHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASE  155 (312)
Q Consensus        97 ~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~  155 (312)
                      +..|.|.++.+|..+...++.+......|=..++-.+.-+.+.+++.++|-.++..+..
T Consensus       116 L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~  174 (617)
T PF15070_consen  116 LNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQD  174 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHH
Confidence            44566667777766666665554444444334444444445555555555555544444

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.34  E-value=0.49  Score=47.82  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=14.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           68 RLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        68 rLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      -|......++++|..++.+|+..+.
T Consensus       165 fl~~ql~~~~~~L~~ae~~l~~f~~  189 (498)
T TIGR03007       165 FIDEQIKTYEKKLEAAENRLKAFKQ  189 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555566666666666665544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=96.33  E-value=0.59  Score=48.24  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=55.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhh------hHHHHHHHHHHHHHHHHHH
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA------GERLKKDLQQAHIEAQSLA  140 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra------~e~lk~EL~q~r~e~q~L~  140 (312)
                      .-+...+..++..+...+.|+..-+.-...+-..+|..|..|-++...-  .+..      .+.||.|...++.+++.|.
T Consensus       217 ~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~--~~~~~~~~~el~~l~~E~~~~~ee~~~l~  294 (511)
T PF09787_consen  217 GELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEE--GFDSSTNSIELEELKQERDHLQEEIQLLE  294 (511)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc--ccccccchhcchhhHHHHHHHHHHHHHHH
Confidence            3333444445555555555555555444555566666666666644331  1111      5678888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          141 RARQELTSKIQQASEALHK  159 (312)
Q Consensus       141 ~~rqeL~aevq~l~~EL~r  159 (312)
                      .+-++|..+++.+..++..
T Consensus       295 ~Qi~~l~~e~~d~e~~~~~  313 (511)
T PF09787_consen  295 RQIEQLRAELQDLEAQLEG  313 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8877777777777666544

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.32  E-value=0.25  Score=53.25  Aligned_cols=43  Identities=19%  Similarity=0.216  Sum_probs=27.3

Q ss_pred             CCchhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHH
Q 021465           43 EPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPR   89 (312)
Q Consensus        43 ~p~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~   89 (312)
                      +++|+|.++|+--..||..=+++    |.-...|+..|..++.|+.+
T Consensus       455 ~~~~~L~e~IeKLk~E~d~e~S~----A~~~~gLk~kL~~Lr~E~sK  497 (762)
T PLN03229        455 PSELALNEMIEKLKKEIDLEYTE----AVIAMGLQERLENLREEFSK  497 (762)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHh
Confidence            46889999999888887543322    33455556666666555555

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.32  E-value=0.71  Score=50.88  Aligned_cols=164  Identities=18%  Similarity=0.248  Sum_probs=84.8

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHH-----
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAH-----  133 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r-----  133 (312)
                      +.+.-..|.-|-.-.-.+-+..+.+|.||.+-+.....++.-+|...++|.|-.-.||.     --|.+|+-+.|     
T Consensus       257 lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm-----aTldKEmAEERaesLQ  331 (1243)
T KOG0971|consen  257 LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM-----ATLDKEMAEERAESLQ  331 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHH
Confidence            34444444444444555556667777777777777777777777777777776665553     22333443333     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-----hHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHH
Q 021465          134 IEAQSLARARQELTSKIQQASEALHKARLEVKNLP-----DLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKN  208 (312)
Q Consensus       134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~-----alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEkn  208 (312)
                      .|+..+..--.+|..++.-|+.|++..=.|.+-..     .+-..-+.||.-+.++|...-.+|-.+++....+......
T Consensus       332 ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE  411 (1243)
T KOG0971|consen  332 QEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE  411 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence            33333333444444555555555544333332111     1111123344444555554444555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          209 LVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       209 L~~marEvekLrAEIanae  227 (312)
                      +.++.+.-|+|.+++.++|
T Consensus       412 ~~eL~r~kE~Lsr~~d~aE  430 (1243)
T KOG0971|consen  412 LEELRRQKERLSRELDQAE  430 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555556655555555

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.31  E-value=0.59  Score=49.43  Aligned_cols=182  Identities=15%  Similarity=0.230  Sum_probs=88.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHH--HHHHhhhhhHhh-hhhH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRV--LLDKIAKMEADC-KAGE  123 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~--L~ek~~k~Eael-ra~e  123 (312)
                      -.+++...+..|++.|-..=+.|....+.++.++...+-++..+...+...+.+.+..-.+  +.+|...|--+- ..++
T Consensus       318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~  397 (594)
T PF05667_consen  318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIA  397 (594)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            5566666777777777655555555555555555555555555544433333332111111  222222221111 1122


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465          124 RLKKDLQQAHIE----AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV  199 (312)
Q Consensus       124 ~lk~EL~q~r~e----~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell  199 (312)
                      .|..-++.....    .+.....|..|+.++..++........+.   -....+|..+++++..+-..+...-..+..+.
T Consensus       398 kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~---~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~  474 (594)
T PF05667_consen  398 KLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESES---KQKLQEIKELREEIKEIEEEIRQKEELYKQLV  474 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222    22344567777777777776554322211   11223444444444433333222222222222


Q ss_pred             HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          200 EQL---------QAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       200 eq~---------qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      .++         ..|.+-+.++..-|.|-+.||.+.-...|
T Consensus       475 ~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr  515 (594)
T PF05667_consen  475 KELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTR  515 (594)
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            222         78888899999999999999988765444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.30  E-value=1.1  Score=51.64  Aligned_cols=31  Identities=16%  Similarity=0.135  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 021465           51 KIAVQAAEIERLARDNHRLAASHITMREDLA   81 (312)
Q Consensus        51 ~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~   81 (312)
                      +|+.-..+|..|-..-..+.+.+..|.+.+.
T Consensus       743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~  773 (1353)
T TIGR02680       743 RIAELDARLAAVDDELAELARELRALGARQR  773 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444443333333333333333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=96.26  E-value=0.98  Score=41.93  Aligned_cols=24  Identities=8%  Similarity=0.344  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          201 QLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       201 q~qaMEknL~~marEvekLrAEIa  224 (312)
                      ..+.-+..+..+...+..-|..+.
T Consensus       127 ~~~~~~~~l~~l~~~l~~~r~~l~  150 (302)
T PF10186_consen  127 ELEERKQRLSQLQSQLARRRRQLI  150 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445555555555444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.24  E-value=0.93  Score=41.46  Aligned_cols=117  Identities=18%  Similarity=0.277  Sum_probs=56.0

Q ss_pred             HHhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH-----HHHHHHHHHHHH
Q 021465          110 DKIAKMEADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLH-----AELDSLRQEHRR  183 (312)
Q Consensus       110 ek~~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alr-----aELe~LrqElq~  183 (312)
                      ++.-..|++| +-+.....|+..++..+++....-.++..++.....+|.+.+.+++.+..+-     .|.+.|..++..
T Consensus        50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~  129 (194)
T PF15619_consen   50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQ  129 (194)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            3333345555 4445555555555566655555555555555555555555555444433322     233444444444


Q ss_pred             HHHHHHH--------------HHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          184 LRATFEY--------------EKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       184 ~RaaiE~--------------EKk~~~elleq~----qaMEknL~~marEvekLrAEIana  226 (312)
                      +...++.              ..+.+.-++..-    .....++..+..|++.|...|..-
T Consensus       130 ~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK  190 (194)
T PF15619_consen  130 LEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK  190 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444333              333322222221    444555555555666666555543

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.21  E-value=0.6  Score=51.45  Aligned_cols=43  Identities=19%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      +-+|--.|+||.++.|.||.-.+..+++.|++.--....+.|.
T Consensus       370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~  412 (1243)
T KOG0971|consen  370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL  412 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence            4456667999999999999888888888888766544444444

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.52  Score=49.33  Aligned_cols=65  Identities=22%  Similarity=0.353  Sum_probs=45.2

Q ss_pred             HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhch-----h-----hHHHHHHHHHhhhhhHhhh
Q 021465           56 AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTE-----S-----DSHIRVLLDKIAKMEADCK  120 (312)
Q Consensus        56 ~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae-----~-----e~qiR~L~ek~~k~Eaelr  120 (312)
                      ..||..+--||++|+...-.|+.+|.-...-+--|..+...+.+.     +     |+-+-.--+++.|||++|.
T Consensus       330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk  404 (654)
T KOG4809|consen  330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK  404 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999899988876655555555555544432     2     3333333488899998874

>PF13514 AAA_27: AAA domain

Probab=96.13  E-value=1.6  Score=48.91  Aligned_cols=97  Identities=14%  Similarity=0.198  Sum_probs=52.7

Q ss_pred             HHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcccchhHH
Q 021465          105 IRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELT-------------SKIQQASEALHKARLEVKNLPDLH  171 (312)
Q Consensus       105 iR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~-------------aevq~l~~EL~r~kad~qql~alr  171 (312)
                      +....+....+-..++....++..+.+.+.++..|...-..|.             .-+..++..|...+...+++..++
T Consensus       728 ~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~  807 (1111)
T PF13514_consen  728 ALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQ  807 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444433333             445666666766666666667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465          172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQ  201 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE~EKk~~~elleq  201 (312)
                      .+++.+++++..++..++.-.+...+++..
T Consensus       808 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~  837 (1111)
T PF13514_consen  808 EQLEELEEELEQAEEELEELEAELAELLEQ  837 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777766655544444444443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.13  E-value=0.081  Score=47.69  Aligned_cols=110  Identities=23%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhh----h
Q 021465           45 LPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADC----K  120 (312)
Q Consensus        45 ~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eael----r  120 (312)
                      .+-+++++.....|+..+.-.+-.|+...+.+..+|..+..++......|..++++.    ..|..++..++.+|    +
T Consensus        69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~----~~L~~~~~~l~~~l~ek~k  144 (194)
T PF08614_consen   69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAEL----AQLEEKIKDLEEELKEKNK  144 (194)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            348899999999999999888888888888877877777777777766555555544    22333333333332    3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH  158 (312)
Q Consensus       121 a~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~  158 (312)
                      .++-+++|+..++.+.-.+......|..+-..|-+-+.
T Consensus       145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm  182 (194)
T PF08614_consen  145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM  182 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=96.06  E-value=0.98  Score=46.08  Aligned_cols=58  Identities=21%  Similarity=0.273  Sum_probs=40.9

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh---HHHH-HHHHHhhhh
Q 021465           58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD---SHIR-VLLDKIAKM  115 (312)
Q Consensus        58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e---~qiR-~L~ek~~k~  115 (312)
                      -|..|...|.-|....+.++-.--..|+|-+-|+..-+.|++--|   .-|- -|..|+.-+
T Consensus        51 rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal  112 (552)
T KOG2129|consen   51 RVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQAL  112 (552)
T ss_pred             HHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHh
Confidence            355578889999999999998889999999888766555544332   2333 566666544

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.01  E-value=0.48  Score=51.15  Aligned_cols=95  Identities=18%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-  202 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-  202 (312)
                      .||.|+.+.+..=++|..---+|-.+--.|.+.+.-.+.       -+.|.|+|+.|+.++...+++-+....+.+.=. 
T Consensus        80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~-------sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~  152 (717)
T PF09730_consen   80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ-------SQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKE  152 (717)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666655556666666666666666666655553       335667777777776666665444333322222 


Q ss_pred             ---HHHHHHHHHHHHHHH---HHHHHHHH
Q 021465          203 ---QAMEKNLVGMAREME---KLHAEVVN  225 (312)
Q Consensus       203 ---qaMEknL~~marEve---kLrAEIan  225 (312)
                         +.||.-|.++..|=|   .||.||..
T Consensus       153 iae~qleEALesl~~EReqk~~LrkEL~~  181 (717)
T PF09730_consen  153 IAEKQLEEALESLKSEREQKNALRKELDQ  181 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               345555555555433   46666654

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.99  E-value=0.98  Score=39.51  Aligned_cols=32  Identities=9%  Similarity=0.211  Sum_probs=15.3

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRI   90 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L   90 (312)
                      +.+.-.++-.|-.....|+++|...+.+...+
T Consensus        12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~   43 (140)
T PF10473_consen   12 LKESESEKDSLEDHVESLERELEMSQENKECL   43 (140)
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHH
Confidence            33344444444444555555555555444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=95.98  E-value=1  Score=40.85  Aligned_cols=109  Identities=17%  Similarity=0.292  Sum_probs=54.8

Q ss_pred             HHHHHHHhhhhhHhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q 021465          105 IRVLLDKIAKMEADCKAGER-------LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSL  177 (312)
Q Consensus       105 iR~L~ek~~k~Eaelra~e~-------lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~L  177 (312)
                      .-+|.+-..+||.+-+-++.       ||..|++.+...+.|...-+.|+.++..++.+|.....             ..
T Consensus        59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~-------------~~  125 (182)
T PF15035_consen   59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEA-------------EW  125 (182)
T ss_pred             cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Confidence            34455555556555544444       55555555555444443333333333333333333222             33


Q ss_pred             HHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 021465          178 RQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAR----EMEKLHAEVVNA  226 (312)
Q Consensus       178 rqElq~~RaaiE~EKk~~~elleq~qaMEknL~~mar----EvekLrAEIana  226 (312)
                      +.|-+....-+..|.+.--.+-.++......+.+|..    .+..+++|+++.
T Consensus       126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~  178 (182)
T PF15035_consen  126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFART  178 (182)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3333333333444444444555666777777776654    556677777654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.98  E-value=1.4  Score=46.74  Aligned_cols=46  Identities=20%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      -|.+.|..-..+|..+..+-..|..++..+..++...+.++.++..
T Consensus       332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~  377 (594)
T PF05667_consen  332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE  377 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666666666666666666666666666666655544

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=95.95  E-value=0.37  Score=52.00  Aligned_cols=136  Identities=15%  Similarity=0.299  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHHHHhh-hhhhh----hhhhhHHHHHHHHH----------HHHHHhHHHHHHhhhhhchhhHHHHHHHHH
Q 021465           47 LLEDKIAVQAAEIERL-ARDNH----RLAASHITMREDLA----------AAQQEIPRIKAHIRNIHTESDSHIRVLLDK  111 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L-~~dNq----rLa~th~~L~qeL~----------aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek  111 (312)
                      =||++++.-..||-.= -+.||    -|-.....|++|+.          .+++=|..|+....++++....--..|.||
T Consensus       433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK  512 (762)
T PLN03229        433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEK  512 (762)
T ss_pred             cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHH
Confidence            6899999999998766 33443    35566666666542          356666677755555555544455678899


Q ss_pred             hhhhhHhh--hhhH-----HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH------HHHHHHHHHHhcccc--
Q 021465          112 IAKMEADC--KAGE-----RLKKDLQQAHIEAQ---------SLARARQELTSKIQQ------ASEALHKARLEVKNL--  167 (312)
Q Consensus       112 ~~k~Eael--ra~e-----~lk~EL~q~r~e~q---------~L~~~rqeL~aevq~------l~~EL~r~kad~qql--  167 (312)
                      +.|+-.|+  +-.+     .||..|+-++.+++         +....+++|-.++..      ++++++.+++++.++  
T Consensus       513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~  592 (762)
T PLN03229        513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGA  592 (762)
T ss_pred             HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc
Confidence            88887775  3334     67778888887776         455567777777777      677766666654443  


Q ss_pred             -------hhHHHHHHHHHHHHH
Q 021465          168 -------PDLHAELDSLRQEHR  182 (312)
Q Consensus       168 -------~alraELe~LrqElq  182 (312)
                             +.++..|+.+++|+.
T Consensus       593 s~~~~~~~~lkeki~~~~~Ei~  614 (762)
T PLN03229        593 SSGDELDDDLKEKVEKMKKEIE  614 (762)
T ss_pred             cccCCCCHHHHHHHHHHHHHHH
Confidence                   345555555555444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.94  E-value=2.8  Score=46.90  Aligned_cols=42  Identities=19%  Similarity=0.322  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 021465          144 QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATF  188 (312)
Q Consensus       144 qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raai  188 (312)
                      +.|..+...+.+++...+.   ++..+...++.+..|+..+++.+
T Consensus       818 e~l~lE~e~l~~e~~~~k~---~l~~~~~~~~~l~~e~~~l~~kv  859 (1174)
T KOG0933|consen  818 ERLQLEHEELEKEISSLKQ---QLEQLEKQISSLKSELGNLEAKV  859 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444433332   34444444444444444444443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.93  E-value=0.21  Score=48.21  Aligned_cols=121  Identities=17%  Similarity=0.285  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-------HHHH--
Q 021465          136 AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-------QAME--  206 (312)
Q Consensus       136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-------qaME--  206 (312)
                      +.+|...++.-.=++..+..-|.+.+   ++++..+.+.-.|+.|.+.+...++..-+.+..+...+       .-+|  
T Consensus        27 ldkLkKE~qQrQfQleSlEAaLqKQK---qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQ  103 (307)
T PF10481_consen   27 LDKLKKERQQRQFQLESLEAALQKQK---QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQ  103 (307)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence            33333333333344444555555555   35566666666677666666666666555555555444       2333  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 021465          207 -----KNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVD  259 (312)
Q Consensus       207 -----knL~~marEvekLrAEIanaekra~a~~~y~~~~~n~~~~~~~~~~g~~~y~~  259 (312)
                           +.+..+..++.+++.||.+....+..+..-=..+..|-..++.|......|.|
T Consensus       104 l~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~  161 (307)
T PF10481_consen  104 LNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSD  161 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhh
Confidence                 44444444555555555544444433321112244455555544433333444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.92  E-value=0.8  Score=39.83  Aligned_cols=18  Identities=33%  Similarity=0.422  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          145 ELTSKIQQASEALHKARL  162 (312)
Q Consensus       145 eL~aevq~l~~EL~r~ka  162 (312)
                      .|...++.|-.+|++...
T Consensus        77 ~l~rriq~LEeele~ae~   94 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEK   94 (143)
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            455556666666655554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=95.92  E-value=2.2  Score=43.41  Aligned_cols=141  Identities=22%  Similarity=0.303  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHHHHHhh-hhhhhh-----------------hhhhHHHHHHHHHHHHHHhHHHHHHhhh----hhchhhHH
Q 021465           47 LLEDKIAVQAAEIERL-ARDNHR-----------------LAASHITMREDLAAAQQEIPRIKAHIRN----IHTESDSH  104 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L-~~dNqr-----------------La~th~~L~qeL~aaq~Elq~L~~~~~~----~~ae~e~q  104 (312)
                      .|-+.|+.--+|++.| +.+|-|                 -+++|.+|++++.++.-.|..++....+    +++-.|-.
T Consensus       249 ~LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~  328 (593)
T KOG4807|consen  249 RLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGH  328 (593)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhcc
Confidence            4445555555666665 456644                 3578999999998887777777665433    33334555


Q ss_pred             HHHHHHHh-------hhhhHhh-hhhHHH----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHh
Q 021465          105 IRVLLDKI-------AKMEADC-KAGERL----KKDLQQAHIEAQSLARARQELT---------SKIQQASEALHKARLE  163 (312)
Q Consensus       105 iR~L~ek~-------~k~Eael-ra~e~l----k~EL~q~r~e~q~L~~~rqeL~---------aevq~l~~EL~r~kad  163 (312)
                      |+.++---       +-||.-- +.+|-|    ..||+.++.|...|.+...--+         +--..+.+||.+.++-
T Consensus       329 ~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSv  408 (593)
T KOG4807|consen  329 IPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSV  408 (593)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            55554211       2233211 112222    2244444444444433222111         1123455677777777


Q ss_pred             cccchhHH----HHHHHHHHHHHHHHHH
Q 021465          164 VKNLPDLH----AELDSLRQEHRRLRAT  187 (312)
Q Consensus       164 ~qql~alr----aELe~LrqElq~~Raa  187 (312)
                      ++.+++||    .|++.++.|++.+-..
T Consensus       409 nsdveaLRrQyleelqsvqRELeVLSEQ  436 (593)
T KOG4807|consen  409 NSDVEALRRQYLEELQSVQRELEVLSEQ  436 (593)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776    4566666666665443

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.92  E-value=2.1  Score=43.75  Aligned_cols=49  Identities=10%  Similarity=0.172  Sum_probs=32.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIR   95 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~   95 (312)
                      =+++|+.--..+.+.|..|-----+-+-.|+|+-.++++-.+.|-....
T Consensus       219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~r  267 (502)
T KOG0982|consen  219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRR  267 (502)
T ss_pred             hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555566666666655555555678889998888886666655443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.90  E-value=0.2  Score=42.66  Aligned_cols=66  Identities=32%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH----HHHHHHHHHHHHHHHHHHHHH
Q 021465          155 EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV----EQLQAMEKNLVGMAREMEKLH  220 (312)
Q Consensus       155 ~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell----eq~qaMEknL~~marEvekLr  220 (312)
                      +||.+=-.+++.|..+|.++..++.++..+++..+.-+......-    ++-+.+++.+..+.+.++.|.
T Consensus        49 ~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~  118 (132)
T PF07926_consen   49 RELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN  118 (132)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556677777777777777777777776555443332221    122444444444444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.89  E-value=0.71  Score=47.72  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSK  149 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~ae  149 (312)
                      +.|+.|.+....+++.|.+.+.+|-.+
T Consensus       333 ~kl~~eie~kEeei~~L~~~~d~L~~q  359 (622)
T COG5185         333 EKLKSEIELKEEEIKALQSNIDELHKQ  359 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            334444444444444444444444333

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.88  E-value=1.3  Score=49.28  Aligned_cols=164  Identities=18%  Similarity=0.276  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh--hHHHHHHHHHh---------hhhhHhh
Q 021465           51 KIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES--DSHIRVLLDKI---------AKMEADC  119 (312)
Q Consensus        51 ~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~--e~qiR~L~ek~---------~k~Eael  119 (312)
                      .|-.+|.|+..|-.+-++|-.+...=...|..+.+++++|.-....++...  --.|+-|..|-         .+..+..
T Consensus       175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k  254 (1072)
T KOG0979|consen  175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYK  254 (1072)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHH
Confidence            355677788888887777776555544455555555555544444443332  22445554333         3345667


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVK----NLPDLHAELDSLRQEHRRLRATFEYEKGLN  195 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~q----ql~alraELe~LrqElq~~RaaiE~EKk~~  195 (312)
                      .+.+.+|.++..+.-+++.+..-+.+|-.++..+..++...+.+..    .+-+.-..+..+.++++.+....|+-|+..
T Consensus       255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~  334 (1072)
T KOG0979|consen  255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA  334 (1072)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888889899888888888888777777777777666655554332    223333445566677777777777766666


Q ss_pred             HHhHHHHHHHHHHHHHHHH
Q 021465          196 IDNVEQLQAMEKNLVGMAR  214 (312)
Q Consensus       196 ~elleq~qaMEknL~~mar  214 (312)
                      ......+....+.+.....
T Consensus       335 ~~rq~~i~~~~k~i~~~q~  353 (1072)
T KOG0979|consen  335 EKRQKRIEKAKKMILDAQA  353 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5555555444455444444

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.87  E-value=0.0022  Score=68.24  Aligned_cols=67  Identities=16%  Similarity=0.341  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465           72 SHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQS  138 (312)
Q Consensus        72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~  138 (312)
                      .+..|+..|..+++|+.++.....+++.+-   +.++.+|-.++..+-++.+...+||+||..+|..+.+
T Consensus       240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r  309 (713)
T PF05622_consen  240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADR  309 (713)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            344455556666666666555444444322   3455556666666666667777788888777765554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.87  E-value=1.9  Score=45.02  Aligned_cols=101  Identities=19%  Similarity=0.306  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH-----------------------HHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELD-----------------------SLRQ  179 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe-----------------------~Lrq  179 (312)
                      ..++.++..+..++..+.....++...++.++++-..++.   +|..++..+.                       .++.
T Consensus       379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~---kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~  455 (569)
T PRK04778        379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEARE---KLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSD  455 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence            3455666666677777777777777777777777666654   3333333332                       3335


Q ss_pred             HHHHHHHHHHHHHhhcHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          180 EHRRLRATFEYEKGLNIDNVE-QLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       180 Elq~~RaaiE~EKk~~~elle-q~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++.++...++. ..-|.+-++ +....+..+..+..+...|......++
T Consensus       456 ~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE  503 (569)
T PRK04778        456 EIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTE  503 (569)
T ss_pred             HHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666555 555666666 555666666666665555555555444

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.86  E-value=2.4  Score=46.66  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=37.6

Q ss_pred             hhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 021465           95 RNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAEL  174 (312)
Q Consensus        95 ~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraEL  174 (312)
                      ..++.++-.-.|..-|...++|+.-.+.+.++.+..++---+.++..+...+.++.....+-++..+.   ++..+..++
T Consensus       434 t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~---El~~l~~e~  510 (980)
T KOG0980|consen  434 TELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ---ELALLLIEL  510 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHH
Confidence            33444443333444444444455444444444444444444444444444444444444444444442   334444444


Q ss_pred             HHHHHHHH
Q 021465          175 DSLRQEHR  182 (312)
Q Consensus       175 e~LrqElq  182 (312)
                      +.++..+.
T Consensus       511 ~~lq~~~~  518 (980)
T KOG0980|consen  511 EELQRTLS  518 (980)
T ss_pred             HHHHHHhh
Confidence            44443333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.80  E-value=3.7  Score=44.58  Aligned_cols=35  Identities=9%  Similarity=0.174  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      ||++.-.-+||.++.=+.-..++..++.||.+...
T Consensus       101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~E  135 (717)
T PF09730_consen  101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEE  135 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            44444444555555444445555555555555554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.78  E-value=2.7  Score=48.46  Aligned_cols=19  Identities=32%  Similarity=0.525  Sum_probs=9.7

Q ss_pred             hHHHHHHHHHHHHhhhhhh
Q 021465           48 LEDKIAVQAAEIERLARDN   66 (312)
Q Consensus        48 lE~~l~~q~~Ei~~L~~dN   66 (312)
                      |+++|+.-..+|..|-..-
T Consensus       747 l~~~IaeL~~~i~~l~~~l  765 (1353)
T TIGR02680       747 LDARLAAVDDELAELAREL  765 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555544333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.77  E-value=0.16  Score=45.85  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA  153 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l  153 (312)
                      ..+.+.+..+++||..+.-    .+.+...++..+.++..++++          ++.+....+..|......|..++..+
T Consensus        70 ~~le~~~~~l~~ELael~r----~~~el~~~L~~~~~~l~~l~~----------~~~~~~~~l~~l~~~~~~L~~~~~~l  135 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELYR----SKGELAQQLVELNDELQELEK----------ELSEKERRLAELEAELAQLEEKIKDL  135 (194)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccc----ccccccccccccccccchhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666655532    345555566666666655554          44444445555555555555666666


Q ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          154 SEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       154 ~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ..+|.....   .+..++.|+..|+=++-.+...+..-++.|.++++..
T Consensus       136 ~~~l~ek~k---~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  136 EEELKEKNK---ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655553   4566667777777777777777777777888888776

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=95.73  E-value=1.4  Score=45.47  Aligned_cols=145  Identities=17%  Similarity=0.274  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI  150 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aev  150 (312)
                      ++|...|..++|..++-...|.+++-..   |..+.+|-=|+.|=+--+--+..||..++.+--|-=++.-.+.++-..+
T Consensus       313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~l  392 (527)
T PF15066_consen  313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTL  392 (527)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHH
Confidence            4444444444444444444444444333   4455555555554444444444555555444333333333333333333


Q ss_pred             HHHH-------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          151 QQAS-------EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       151 q~l~-------~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrA  221 (312)
                      |.|.       +.|+..+.   .-+.|.-++..++..+.+++.++-.|...+.+-+.|--.|++.|-.-..||++|..
T Consensus       393 qnLqe~la~tqk~LqEsr~---eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~  467 (527)
T PF15066_consen  393 QNLQEALANTQKHLQESRN---EKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQ  467 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3333       23333333   23667778888888888888887778777788888888888888877777766543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=1.1  Score=48.73  Aligned_cols=66  Identities=21%  Similarity=0.308  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV----KNLPDLHAELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~----qql~alraELe~LrqElq~~RaaiE~  190 (312)
                      ++....|++.|+.-|.-.-+.|..+++..+-++...+.++    ++.+-.+.|++.|+++|+..+..+-+
T Consensus       435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~  504 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK  504 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455556666666666666666666666555554444322    23344445556666666555555443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=95.73  E-value=0.36  Score=51.70  Aligned_cols=53  Identities=28%  Similarity=0.452  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQE  180 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqE  180 (312)
                      ||-++.-++-+|.+.|.-|.+++-.|+.++++.+...+.+|.++++++.|+|-
T Consensus       867 Elthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qR  919 (961)
T KOG4673|consen  867 ELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQR  919 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            66778899999999999999999999999999999999999999999999853

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.69  E-value=1.3  Score=38.56  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=11.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHH
Q 021465          167 LPDLHAELDSLRQEHRRLRATF  188 (312)
Q Consensus       167 l~alraELe~LrqElq~~Raai  188 (312)
                      .+.+..-|..|-.|+..+...+
T Consensus        75 ~E~l~rriq~LEeele~ae~~L   96 (143)
T PF12718_consen   75 AEQLNRRIQLLEEELEEAEKKL   96 (143)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHH
Confidence            3445555555555555555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.67  E-value=1.4  Score=48.32  Aligned_cols=159  Identities=18%  Similarity=0.238  Sum_probs=87.4

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh---hhhchhhHHHHHHHHHhhhhhHhhhhhHH----HHHHHHHHHHHH
Q 021465           64 RDNHRLAASHITMREDLAAAQQEIPRIKAHIR---NIHTESDSHIRVLLDKIAKMEADCKAGER----LKKDLQQAHIEA  136 (312)
Q Consensus        64 ~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~---~~~ae~e~qiR~L~ek~~k~Eaelra~e~----lk~EL~q~r~e~  136 (312)
                      .|-+.|-.+|.. +++-...-+|-++++...-   +=.-+++.|||.|--+...+|.++..++.    +..++.+.+.++
T Consensus        65 vdkaglneSvii-e~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etel  143 (1265)
T KOG0976|consen   65 VDKAGLNESVII-EQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEI  143 (1265)
T ss_pred             HHHhhccchhhh-hhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444432 2333334445555554433   23345578999999999999999876654    455566666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH--HHHHHHHHHHHH
Q 021465          137 QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL--QAMEKNLVGMAR  214 (312)
Q Consensus       137 q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~--qaMEknL~~mar  214 (312)
                      .++.+.-.+|..++-+-+.||...-.|+   -.--.+|..++-+++.+=+..-.|++.+++.+++.  ...+++-+++..
T Consensus       144 E~~~srlh~le~eLsAk~~eIf~~~~~L---~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~  220 (1265)
T KOG0976|consen  144 ENLNSRLHKLEDELSAKAHDIFMIGEDL---HDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLEL  220 (1265)
T ss_pred             HhhHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            6665554444444444444443333211   11114555556666666666666777777777776  333444444433


Q ss_pred             -HHHHHHHHHHHH
Q 021465          215 -EMEKLHAEVVNA  226 (312)
Q Consensus       215 -EvekLrAEIana  226 (312)
                       +.+.++.+|..-
T Consensus       221 ~~~q~~tq~vl~e  233 (1265)
T KOG0976|consen  221 HKDQENTQKVLKE  233 (1265)
T ss_pred             HHHHHHHHHHHHH
Confidence             555555555543

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=95.66  E-value=0.93  Score=46.80  Aligned_cols=79  Identities=19%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             HHHHHHhhhhhHhhh-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhHHHHHHHHHHH
Q 021465          106 RVLLDKIAKMEADCK-AGERL-KKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL---EVKNLPDLHAELDSLRQE  180 (312)
Q Consensus       106 R~L~ek~~k~Eaelr-a~e~l-k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka---d~qql~alraELe~LrqE  180 (312)
                      +.|-+|..-+|..+. ....+ ...+.-+ ..+-++...+++|.....+++.-+.-.+.   =.+++..++.+.+..++|
T Consensus       158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl-~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~e  236 (511)
T PF09787_consen  158 RSLQEKLSLLDEALKREDGNAITAVVEFL-KRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAE  236 (511)
T ss_pred             hhHHHHHHHHHHHHHhcCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            666677666664432 11111 1122212 22233445566666655544443322220   012344445555555555


Q ss_pred             HHHHH
Q 021465          181 HRRLR  185 (312)
Q Consensus       181 lq~~R  185 (312)
                      +...+
T Consensus       237 l~~Yk  241 (511)
T PF09787_consen  237 LQQYK  241 (511)
T ss_pred             HHHHH
Confidence            55554

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=95.66  E-value=0.71  Score=39.73  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=15.9

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           61 RLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      .|+..-++-....+.|...+.....|+.+|..
T Consensus        42 ~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~   73 (151)
T PF11559_consen   42 DLLQQRDRDMEQREDLSDKLRRLRSDIERLQN   73 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34444444444555555555555555555544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.63  E-value=0.31  Score=47.87  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh-HHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 021465           62 LARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD-SHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLA  140 (312)
Q Consensus        62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e-~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~  140 (312)
                      --..|..|......|+|.|..+|-|+.-|+..+.+.+...+ ...|...   ..=|..+.-.|.++....|+..|++.+.
T Consensus        77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~d~qs~l  153 (319)
T PF09789_consen   77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---HEREDLVEQLEKLREQIEQLERDLQSLL  153 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999998888776651 1112111   1113445666788888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 021465          141 RARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       141 ~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      -..++|..+-...+....|..-
T Consensus       154 DEkeEl~~ERD~yk~K~~RLN~  175 (319)
T PF09789_consen  154 DEKEELVTERDAYKCKAHRLNH  175 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888887777777764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.63  E-value=1  Score=48.63  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHH----hHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNID----NVEQLQAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~e----lleq~qaMEknL~~marEvekLrA  221 (312)
                      |+.-=..+++||.+.+.   +|..+++-|+.++..+...+..++..++....    --.|.+.+...|..+..+|+.+-.
T Consensus       630 LS~AEr~~~~EL~~~~~---~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~  706 (717)
T PF10168_consen  630 LSEAEREFKKELERMKD---QLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVK  706 (717)
T ss_pred             CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333556666666665   45556666666666666555545532222111    224557778888888888888888


Q ss_pred             HHHHHHHh
Q 021465          222 EVVNAEMR  229 (312)
Q Consensus       222 EIanaekr  229 (312)
                      +|.+..+.
T Consensus       707 ~ik~i~~~  714 (717)
T PF10168_consen  707 QIKNIKKI  714 (717)
T ss_pred             HHHHHHHh
Confidence            88776653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.61  E-value=4  Score=43.95  Aligned_cols=66  Identities=24%  Similarity=0.312  Sum_probs=48.6

Q ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHH------HHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          162 LEVKNLPDLHAELDSLRQEHRRLRATF------EYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       162 ad~qql~alraELe~LrqElq~~Raai------E~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ..+|.++.+...+...+.|+..+|..-      ..|++.....+.+...|+-.+..+.-|.+.|.+++.+++
T Consensus       248 dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE  319 (716)
T KOG4593|consen  248 DQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWE  319 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            345666777777777777777665542      236677777777788888888888889999988888776

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.56  E-value=1.2  Score=47.54  Aligned_cols=54  Identities=13%  Similarity=0.187  Sum_probs=34.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh----hHHHHHHHHHhhhhhHh
Q 021465           65 DNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES----DSHIRVLLDKIAKMEAD  118 (312)
Q Consensus        65 dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~----e~qiR~L~ek~~k~Eae  118 (312)
                      -.+-|......++++|..++.+|+..+....-+-.+.    +.++.+|..+.....++
T Consensus       195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~  252 (754)
T TIGR01005       195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARAN  252 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHH
Confidence            3466788888899999999988888877544433222    24555555544444433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=95.55  E-value=5.4  Score=44.80  Aligned_cols=49  Identities=10%  Similarity=0.253  Sum_probs=23.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIR   95 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~   95 (312)
                      ..+..+.....+++.+...-..+...+..+.+.+...+..+..+...+.
T Consensus       527 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (1047)
T PRK10246        527 VNQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQ  575 (1047)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555556555444444444444444444444444444444333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.55  E-value=0.57  Score=43.74  Aligned_cols=54  Identities=15%  Similarity=0.267  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDS  176 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~  176 (312)
                      +.|.+++.+++.++..|....+.|...+..+.++|+.++.++.++...+.+|..
T Consensus        52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666777777777777777777777777777666555555555544

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.54  E-value=2.4  Score=40.75  Aligned_cols=155  Identities=18%  Similarity=0.278  Sum_probs=98.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHH-H
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGER-L  125 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~-l  125 (312)
                      .+.+.+..+..+|..+-.+=+-+-.....|-..+..++..++-+..-+..+++    .|-.|-.++..++..++.... |
T Consensus        28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~----eik~l~~eI~~~~~~I~~r~~~l  103 (265)
T COG3883          28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKA----EIKKLQKEIAELKENIVERQELL  103 (265)
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888887777776655555555555544444444444444443333333    233344444444444432222 2


Q ss_pred             HHHHHHH------------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 021465          126 KKDLQQA------------------------H-IEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQE  180 (312)
Q Consensus       126 k~EL~q~------------------------r-~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqE  180 (312)
                      +..+.-+                        | .=+..++.+|+.++...+.-.++|...+.   .+..-...|..+.+|
T Consensus       104 ~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~---~l~~~~e~l~al~~e  180 (265)
T COG3883         104 KKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQA---ALEDKLETLVALQNE  180 (265)
T ss_pred             HHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            2222111                        1 33556788999999999999999998886   777888888889999


Q ss_pred             HHHHHHHHHHHHhhcHHhHHHHHHHHHH
Q 021465          181 HRRLRATFEYEKGLNIDNVEQLQAMEKN  208 (312)
Q Consensus       181 lq~~RaaiE~EKk~~~elleq~qaMEkn  208 (312)
                      ++..+..++..+.....++.+++.-+.+
T Consensus       181 ~e~~~~~L~~qk~e~~~l~~~~aa~~a~  208 (265)
T COG3883         181 LETQLNSLNSQKAEKNALIAALAAKEAS  208 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888887544433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.52  E-value=4.6  Score=44.46  Aligned_cols=52  Identities=25%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          174 LDSLRQEHRRLRATFEYEKGLNID---NVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       174 Le~LrqElq~~RaaiE~EKk~~~e---lleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      ++.+..++...+..++..++....   .+++++....++.....+++++...+..
T Consensus       690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  744 (908)
T COG0419         690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALEL  744 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334666666666666554444444   6666666666666666666666644443

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=95.51  E-value=0.29  Score=52.58  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAA   83 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aa   83 (312)
                      =||+.|+-+.++++-+..-|.-|-....-++++|..+
T Consensus        95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs  131 (916)
T KOG0249|consen   95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQS  131 (916)
T ss_pred             HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhH
Confidence            7888888888888877777766555555555555443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=95.51  E-value=0.42  Score=47.34  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021465          134 IEAQSLARARQELTSKIQQASEALHKARLEVKNL  167 (312)
Q Consensus       134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql  167 (312)
                      .|.+.|..+.+.|.+++-..+.=+.+.+.+.+.+
T Consensus        99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~L  132 (401)
T PF06785_consen   99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHL  132 (401)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            3333344444444444444433334444433333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.50  E-value=2.7  Score=41.00  Aligned_cols=69  Identities=23%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---hcccchhHHHHHHHHHHHHHHHHHHH
Q 021465          120 KAGERLKKDLQQAHIEAQSL---ARARQELTSKIQQASEALHKARL---EVKNLPDLHAELDSLRQEHRRLRATF  188 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L---~~~rqeL~aevq~l~~EL~r~ka---d~qql~alraELe~LrqElq~~Raai  188 (312)
                      +...+++.+++.+.-..+..   .+.-.+|+.++..++++|...+.   .+.++..+.++++.++.+....+..|
T Consensus       107 ~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki  181 (294)
T COG1340         107 RSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI  181 (294)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666554222221   12234566666666666655441   22244555555555555544444443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.32  E-value=2.3  Score=38.99  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanaekr  229 (312)
                      -.+++.|..|...+|+-.++|...-..
T Consensus       146 ~lLEkKl~~l~~~lE~keaqL~evl~~  172 (201)
T PF13851_consen  146 LLLEKKLQALSEQLEKKEAQLNEVLAA  172 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457778888888888888887765433

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=95.30  E-value=2.4  Score=39.12  Aligned_cols=34  Identities=12%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHH-HHHHhHHHHH
Q 021465           59 IERLARDNHRLAASHITMREDLAA-AQQEIPRIKA   92 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~a-aq~Elq~L~~   92 (312)
                      +..|+.+..+++..|..+-+.|.. .-..|..+..
T Consensus        62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~   96 (236)
T cd07651          62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFAS   96 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777777776653 4445555433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>PF13514 AAA_27: AAA domain

Probab=95.25  E-value=2  Score=48.19  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhhhh
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADCKA  121 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eaelra  121 (312)
                      .+-.++.....+|+.....+    .+...+++++..++++++.|+..+..++.+.     -.++..++.+...+++.|.+
T Consensus       154 ~~l~~l~e~~~~l~~~~~~~----~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~  229 (1111)
T PF13514_consen  154 QALKELKELERELREAEVRA----AEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAE  229 (1111)
T ss_pred             HHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            34444455555555544443    3444455555555555555555444444443     22334445555555544442


Q ss_pred             h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          122 G-------ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH  158 (312)
Q Consensus       122 ~-------e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~  158 (312)
                      .       +.....+.++..++..+......+..++..+..++.
T Consensus       230 l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  273 (1111)
T PF13514_consen  230 LGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD  273 (1111)
T ss_pred             cCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2       122334444444444444444444444444444443

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=95.18  E-value=2  Score=42.69  Aligned_cols=31  Identities=13%  Similarity=0.328  Sum_probs=14.3

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           71 ASHITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      .+..-|.++|..++++|......+.+.+.++
T Consensus       171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       171 KAALWFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444445555544444444444444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.11  E-value=2.7  Score=38.70  Aligned_cols=43  Identities=26%  Similarity=0.333  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465           48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRI   90 (312)
Q Consensus        48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L   90 (312)
                      |.+.-..-++.|..+--.|.+|......|++.+-++|+=++.-
T Consensus        20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a   62 (193)
T PF14662_consen   20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA   62 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566667777777788888888888888777776544443

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.10  E-value=4.9  Score=41.66  Aligned_cols=91  Identities=14%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHH----HHhhcHHhHHHHHHHH
Q 021465          134 IEAQSLARARQELTSKIQQASEALHKARLEV---KNLPDLHAELDSLRQEHRRLRATFEY----EKGLNIDNVEQLQAME  206 (312)
Q Consensus       134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~---qql~alraELe~LrqElq~~RaaiE~----EKk~~~elleq~qaME  206 (312)
                      ..++.|...++.|..+.+.|-.++=..+...   +.-..+..=|.-++..|..-+..++.    +.+.+..+-++++.+.
T Consensus        99 ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~  178 (475)
T PRK10361         99 DKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ  178 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566677777777777777774433210   11123333456666777777666554    5666777777776666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          207 KNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       207 knL~~marEvekLrAEIa  224 (312)
                      ..-..|..|..+|..-|.
T Consensus       179 ~~n~~i~~ea~nLt~ALk  196 (475)
T PRK10361        179 QLNAQMAQEAINLTRALK  196 (475)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            666677777777755554

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.04  E-value=0.0062  Score=64.87  Aligned_cols=91  Identities=15%  Similarity=0.268  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           75 TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA-GERLKKDLQQAHIEAQSLARARQELTSKIQQA  153 (312)
Q Consensus        75 ~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra-~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l  153 (312)
                      .|.+....++.++..+......++...|..++.|.........+.+. .-.++.++.+++..+..+...-+.|..+++.+
T Consensus       118 ~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l  197 (722)
T PF05557_consen  118 QLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEEL  197 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444555554444455555555555552211222222221 12355566666655555555555566666666


Q ss_pred             HHHHHHHHHhcc
Q 021465          154 SEALHKARLEVK  165 (312)
Q Consensus       154 ~~EL~r~kad~q  165 (312)
                      ++.|...+.+++
T Consensus       198 ~~~le~~~~~~~  209 (722)
T PF05557_consen  198 KEQLEELQSELQ  209 (722)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            666655554433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=95.04  E-value=2.3  Score=37.58  Aligned_cols=60  Identities=25%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-----QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-----qaMEknL~~marEvekLrAEIanae  227 (312)
                      ......+..++.++..++...+..++.+.++-.+.     -..-.+++....+++.|+..|.+++
T Consensus       101 ~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~  165 (177)
T PF13870_consen  101 KDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELE  165 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444433333     1122234444445555555554443

>PRK12704 phosphodiesterase; Provisional

Probab=95.02  E-value=2  Score=44.70  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=20.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      +|.....+|+..+++++..+..++..+......|++.
T Consensus       111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~  147 (520)
T PRK12704        111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI  147 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555666666555555555544455544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=1.1  Score=48.96  Aligned_cols=146  Identities=20%  Similarity=0.218  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465           53 AVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQA  132 (312)
Q Consensus        53 ~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~  132 (312)
                      ..|..|+.+++.+|++|-...+-|..+|.--...++.+.+...+.......-.-.+-++-.-+| +++..-..+..+.+.
T Consensus       733 ~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~E-l~~~l~e~~~~l~~~  811 (970)
T KOG0946|consen  733 KTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIE-LLKNLSEESTRLQEL  811 (970)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHH-HHHhhhhhhhHHHHH
Confidence            3445555555555555555555555555555555556655555444433222222222221111 111122234456677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ..++++|..+-++++....+.-..+.....   .-..+-.+.....+++..+...|..=+++-.++.|.+
T Consensus       812 q~e~~~~keq~~t~~~~tsa~a~~le~m~~---~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~  878 (970)
T KOG0946|consen  812 QSELTQLKEQIQTLLERTSAAADSLESMGS---TEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKI  878 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHhhc---cccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhh
Confidence            778888888888888887777777766553   2233334444555555555555544444444444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.98  E-value=3.9  Score=39.89  Aligned_cols=103  Identities=17%  Similarity=0.275  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK  126 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk  126 (312)
                      -.|++|+.-+.-...|+.++.++...+..+++....++.|...+..-+           .-......|||...|..+.--
T Consensus        19 ~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~-----------~k~~~~k~KLE~LCRELQk~N   87 (309)
T PF09728_consen   19 SPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSEL-----------SKAILAKSKLESLCRELQKQN   87 (309)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence            448899988888888999999999999999999988888888887732           344455567777766655544


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          127 KDLQQA-HIEAQSLARARQELTSKIQQASEALHKA  160 (312)
Q Consensus       127 ~EL~q~-r~e~q~L~~~rqeL~aevq~l~~EL~r~  160 (312)
                      ..|... ..-+..-...|.++++..+..-.+|...
T Consensus        88 k~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~  122 (309)
T PF09728_consen   88 KKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQ  122 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444322 3345556677888888888888888553

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=94.96  E-value=2.4  Score=37.44  Aligned_cols=161  Identities=17%  Similarity=0.242  Sum_probs=75.8

Q ss_pred             HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHH-HHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHH
Q 021465           56 AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIK-AHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHI  134 (312)
Q Consensus        56 ~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~-~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~  134 (312)
                      ..+|..+-..|-.|-.+...++..|....+==..|. .+.-.++.|.......+.+|...+-.       ||.   ....
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~-------Lk~---~~~~   74 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLK-------LKK---KIGK   74 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHH
Confidence            445555555555555555444444433322111111 12234455554444445555433321       111   1113


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHh-----hcHHhHHHHHHHH
Q 021465          135 EAQSLARARQE---LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKG-----LNIDNVEQLQAME  206 (312)
Q Consensus       135 e~q~L~~~rqe---L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk-----~~~elleq~qaME  206 (312)
                      .++.|.+.+..   +..+...++.+|...+.   .+..++.++..++.+...++.....-+.     .+..++.......
T Consensus        75 ~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~---~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~  151 (177)
T PF13870_consen   75 TVQILTHVKEKLHFLSEELERLKQELKDREE---ELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTK  151 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence            33333333332   33444555555555443   4555556666666666666555333211     2355555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 021465          207 KNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       207 knL~~marEvekLrAEIanaekr  229 (312)
                      ..+..+...+..|+..+..++.+
T Consensus       152 ~~~~~l~~~i~~l~rk~~~l~~~  174 (177)
T PF13870_consen  152 EEVEELRKEIKELERKVEILEMR  174 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            55566666677777666666544

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.92  E-value=0.97  Score=46.76  Aligned_cols=145  Identities=13%  Similarity=0.204  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHH-HhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 021465           74 ITMREDLAAAQQ-EIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELT-----  147 (312)
Q Consensus        74 ~~L~qeL~aaq~-Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~-----  147 (312)
                      ..+++||.+.=. -.+.+...|.+++.+.    +.|++++...+..=..++-|+..-..++.|.-+|.+.-..|-     
T Consensus       252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n----~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~  327 (622)
T COG5185         252 EPSEQELKLGFEKFVHIINTDIANLKTQN----DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE  327 (622)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            345566655433 3455666666666655    455555544443333444444444444455555555444444     


Q ss_pred             --HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          148 --SKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       148 --aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan  225 (312)
                        ..+..|+.+++....   +|.+|++.++.|+..+...+-.++.-++-    ..+...+.++|+.|.-++++|+.++-.
T Consensus       328 ~~g~l~kl~~eie~kEe---ei~~L~~~~d~L~~q~~kq~Is~e~fe~m----n~Ere~L~reL~~i~~~~~~L~k~V~~  400 (622)
T COG5185         328 WPGKLEKLKSEIELKEE---EIKALQSNIDELHKQLRKQGISTEQFELM----NQEREKLTRELDKINIQSDKLTKSVKS  400 (622)
T ss_pred             cchHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhcCCCHHHHHHH----HHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence              444445555555444   45555555555555554444433321111    112255677788888888888887775


Q ss_pred             HHHh
Q 021465          226 AEMR  229 (312)
Q Consensus       226 aekr  229 (312)
                      .+-.
T Consensus       401 ~~le  404 (622)
T COG5185         401 RKLE  404 (622)
T ss_pred             HHHH
Confidence            5533

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.91  E-value=2.3  Score=48.31  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=23.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          196 IDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       196 ~elleq~qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      ++.++.++.|+..+.+-.+.++...++|+..++|.+
T Consensus      1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence            444455566666666666778888888888877754

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.90  E-value=4.3  Score=43.90  Aligned_cols=45  Identities=16%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHh
Q 021465           72 SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEAD  118 (312)
Q Consensus        72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eae  118 (312)
                      .+-+||.+.-.++.||+.-  ...+.-+|++-+|+.|+..+-||-..
T Consensus       424 ERDalr~e~kslk~ela~~--l~~DeLaEkdE~I~~lm~EGEkLSK~  468 (961)
T KOG4673|consen  424 ERDALRREQKSLKKELAAA--LLKDELAEKDEIINQLMAEGEKLSKK  468 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4556677777777776543  22367788999999999888776543

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.89  E-value=3.9  Score=41.30  Aligned_cols=65  Identities=8%  Similarity=0.242  Sum_probs=41.2

Q ss_pred             cchhHHHHHHHHHHHHHHH------------HHHHHH-HHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465          166 NLPDLHAELDSLRQEHRRL------------RATFEY-EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRG  230 (312)
Q Consensus       166 ql~alraELe~LrqElq~~------------RaaiE~-EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra  230 (312)
                      ++..++++|..++.++..+            +..++. ..+...+..+++...+.++.....++++++..+.+..-++
T Consensus       244 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~A  321 (457)
T TIGR01000       244 QIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKGVIKA  321 (457)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEC
Confidence            4455555555555555543            333322 2233345667778889999999999999999988765443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=94.85  E-value=1.7  Score=40.63  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHH-
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVE-  200 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elle-  200 (312)
                      +..++.+|.+++..+-++.+..+.|-.++..+..+.++.+.  +-.-+|.+.-+.|=.+.....+.+|...+.+...+. 
T Consensus        33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~--~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~  110 (225)
T COG1842          33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE--KAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ  110 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566655555666666666666666666655554  334455555566666666666665555555444444 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          201 ---QLQAMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       201 ---q~qaMEknL~~marEvekLrAEIanaekr  229 (312)
                         +...|++++..+...|.++++.......+
T Consensus       111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar  142 (225)
T COG1842         111 AEEQVEKLKKQLAALEQKIAELRAKKEALKAR  142 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               44778888888888888888877765544

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=94.85  E-value=0.76  Score=49.29  Aligned_cols=109  Identities=15%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH----HHHHHHHHHH
Q 021465           72 SHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADCKAGERLKKDLQQA----HIEAQSLARA  142 (312)
Q Consensus        72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~----r~e~q~L~~~  142 (312)
                      +..=|.++|..++++|......+.+.+.++     +.+...+.+++..+++.+...+...+++.+.    +-.+++|.. 
T Consensus       268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~-  346 (726)
T PRK09841        268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLE-  346 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHH-
Confidence            344444444444444444444444444443     2233445555555555444433333333221    122222222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          143 RQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       143 rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                            +...+++++++.+..+.+++....++..|+.+.+..|.-
T Consensus       347 ------~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l  385 (726)
T PRK09841        347 ------KRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV  385 (726)
T ss_pred             ------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence                  333444455555555555555555555555555544443

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=94.84  E-value=3.4  Score=42.89  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHH
Q 021465          170 LHAELDSLRQEH-----RRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMA  213 (312)
Q Consensus       170 lraELe~LrqEl-----q~~RaaiE~EKk~~~elleq~----qaMEknL~~ma  213 (312)
                      ++.++...+.|+     ...+..++.|+..+...|+++    +.+++-+....
T Consensus       346 l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~  398 (582)
T PF09731_consen  346 LKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARS  398 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444     334666777887777777666    55555554444

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=94.84  E-value=3.9  Score=39.21  Aligned_cols=41  Identities=12%  Similarity=0.152  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHh
Q 021465           72 SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKI  112 (312)
Q Consensus        72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~  112 (312)
                      ++..|++-..-++.-...|...|.+...-.-..+|.|..+-
T Consensus         7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy   47 (258)
T PF15397_consen    7 SLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQY   47 (258)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence            44455555555555555555555555555555666665543

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=94.81  E-value=4.2  Score=41.46  Aligned_cols=104  Identities=22%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhh-----hhHHHHHHHHHHHHHHhHHHHHHh------------------hhhhchhhH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLA-----ASHITMREDLAAAQQEIPRIKAHI------------------RNIHTESDS  103 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa-----~th~~L~qeL~aaq~Elq~L~~~~------------------~~~~ae~e~  103 (312)
                      .+|+---.-.+|+++|-.+..||-     +|..+++-=-.+-++||.|=..--                  .+++-|-+.
T Consensus       353 kiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeV  432 (593)
T KOG4807|consen  353 KIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEV  432 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence            777754445578888888887763     444444333333333333322222                  223333333


Q ss_pred             HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI  150 (312)
Q Consensus       104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aev  150 (312)
                      -.-.-..|....-...++.|+-++-|.|-+.|-|.|.+..|+|-..+
T Consensus       433 LSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRL  479 (593)
T KOG4807|consen  433 LSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRL  479 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence            33334456665566677888888888888899999999988875543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=2.1  Score=45.45  Aligned_cols=90  Identities=16%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhc--HHhH-HHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLN--IDNV-EQLQA  204 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~--~ell-eq~qa  204 (312)
                      ++.+..-++.++....+.|..+...|..+|...+          ++|+.|+.++.+.+..++.+...+  .+.+ .....
T Consensus       416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k----------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~  485 (652)
T COG2433         416 EITVYEKRIKKLEETVERLEEENSELKRELEELK----------REIEKLESELERFRREVRDKVRKDREIRARDRRIER  485 (652)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3344445555555555555555555555554444          666666666666666654333222  2222 33388


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021465          205 MEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       205 MEknL~~marEvekLrAEIanae  227 (312)
                      ++++|.+-...++.|+.+++...
T Consensus       486 L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         486 LEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999988776

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=94.73  E-value=3.3  Score=38.76  Aligned_cols=44  Identities=7%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhH
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEA  117 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Ea  117 (312)
                      ..|.|.|-.++.+|..++..+..+.+.+   +.++..+.....|+|.
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~   73 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE   73 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778888888888877777777666   5555555566666553

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.65  E-value=3.7  Score=38.08  Aligned_cols=54  Identities=19%  Similarity=0.257  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR  178 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr  178 (312)
                      +..+-.|..|+.+|+.++...=-+|...+..++.-+...+.   .=+.|+..++...
T Consensus        71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~---NEE~Lkk~~~ey~  124 (207)
T PF05010_consen   71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK---NEETLKKCIEEYE  124 (207)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence            34555666777777777777777777777777777666553   3344444443333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=94.61  E-value=3  Score=43.43  Aligned_cols=37  Identities=16%  Similarity=0.174  Sum_probs=16.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      +|.....+|+...++++.....++.........|+.+
T Consensus       105 ~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~  141 (514)
T TIGR03319       105 NLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI  141 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444555444444444333333344443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.61  E-value=0.0094  Score=63.47  Aligned_cols=170  Identities=21%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh---------HHHHHHHHHhhhhhH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD---------SHIRVLLDKIAKMEA  117 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e---------~qiR~L~ek~~k~Ea  117 (312)
                      .+..+++.-...+++|-.++.++-....-++.++...+.||..|+..+..+.++.+         --+|+-.+|..|+|+
T Consensus       236 ~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~  315 (713)
T PF05622_consen  236 HLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLEN  315 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            44455555566677777777776665555555555555555555444443333321         134555677777776


Q ss_pred             hhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021465          118 DCKAGERLKKDLQ---QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGL  194 (312)
Q Consensus       118 elra~e~lk~EL~---q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~  194 (312)
                      ++   +.+|+.|+   .++..++.|......|+.....+-.+|.+..       +++..++.+++++..+...+..+.+.
T Consensus       316 ~v---e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~-------~~~~qle~~k~qi~eLe~~l~~~~~~  385 (713)
T PF05622_consen  316 EV---EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR-------ALKSQLEEYKKQIQELEQKLSEESRR  385 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65   44554444   4466666666666666666666666665544       46666667777776666666655555


Q ss_pred             cHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          195 NIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       195 ~~elleq~qaMEknL~~marEvekLrAEIana  226 (312)
                      ...+..++..++..+.++.++-+.|..++...
T Consensus       386 ~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L  417 (713)
T PF05622_consen  386 ADKLEFENKQLEEKLEALEEEKERLQEERDSL  417 (713)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556666666666666666666655543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.57  E-value=9.1  Score=42.18  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=19.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           68 RLAASHITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        68 rLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      .+...+..+...+...+..+.+|......+....
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~  304 (908)
T COG0419         271 IREEELRELERLLEELEEKIERLEELEREIEELE  304 (908)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666666666666555554444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.56  E-value=0.0098  Score=63.38  Aligned_cols=62  Identities=32%  Similarity=0.414  Sum_probs=0.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHH---HH---HHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRAT---FE---YEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       166 ql~alraELe~LrqElq~~Raa---iE---~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      .+..|.++...++.|+.++|..   ++   .|+......++.+..++.+|..+.-+.++|+.++..+.
T Consensus       258 ~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~  325 (722)
T PF05557_consen  258 HIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWE  325 (722)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666777777664   22   34444555566666666777777777777777766544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.53  E-value=4.7  Score=45.94  Aligned_cols=181  Identities=19%  Similarity=0.248  Sum_probs=82.5

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhh---hhHHHHHHHHHHH---HHHhHH-HHHHhhhhhchhhHHHHHHHHHhhhhhHhh
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLA---ASHITMREDLAAA---QQEIPR-IKAHIRNIHTESDSHIRVLLDKIAKMEADC  119 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa---~th~~L~qeL~aa---q~Elq~-L~~~~~~~~ae~e~qiR~L~ek~~k~Eael  119 (312)
                      +||+-+.--..+++.|...++.++   ..+-.|++.+.-.   ..||++ -.+....=..+.+.++.+..++..++++++
T Consensus       438 ~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~  517 (1317)
T KOG0612|consen  438 ILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALV  517 (1317)
T ss_pred             hcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            788777666677788877777777   3333344333222   222232 111112222334445566666666666665


Q ss_pred             hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhcc----cchhHHHHH
Q 021465          120 KAGE----RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA-----------------RLEVK----NLPDLHAEL  174 (312)
Q Consensus       120 ra~e----~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~-----------------kad~q----ql~alraEL  174 (312)
                      |..+    -+++.....+-..+++.+.+++|.+....++-+++..                 ...+-    .+..+....
T Consensus       518 ~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k  597 (1317)
T KOG0612|consen  518 RQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESK  597 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence            4322    2233333333444444555555443333333222111                 00000    111111112


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          175 DSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       175 e~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ..+.++...++...+.++..+.+..+...+.+..+.++....+.+..+|.+++
T Consensus       598 ~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~  650 (1317)
T KOG0612|consen  598 SKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE  650 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence            23334444455555555555555555555555555555555555555555444

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=94.51  E-value=2.1  Score=37.97  Aligned_cols=89  Identities=20%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      +.+.+.|--+..+.++|...+++|-.-+.-++++++-.+          .-||....||..+...|....+.+.+-++..
T Consensus        52 ekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vR----------kkID~vNreLkpl~~~cqKKEkEykealea~  121 (159)
T PF04949_consen   52 EKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVR----------KKIDSVNRELKPLGQSCQKKEKEYKEALEAF  121 (159)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            566667777778888888888888888888888877766          4444444555555555444444444444333


Q ss_pred             -------HHHHHHHHHHHHHHHHHHH
Q 021465          203 -------QAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       203 -------qaMEknL~~marEvekLrA  221 (312)
                             ..+--.|.++..|++++|-
T Consensus       122 nEknkeK~~Lv~~L~eLv~eSE~~rm  147 (159)
T PF04949_consen  122 NEKNKEKAQLVTRLMELVSESERLRM  147 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   4455566777777777763

This entry represents proteins annotated as RAB6-interacting golgins.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.43  E-value=6.4  Score=39.85  Aligned_cols=35  Identities=6%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      +....+..-|++++..++++|......+.+.+.++
T Consensus       157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~  191 (498)
T TIGR03007       157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN  191 (498)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34556777788888888888888887777776555

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.41  E-value=4  Score=45.84  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=78.2

Q ss_pred             hhHHHH-----HHHHHHHHhhhhhhhhhhhhH--HHHHHHHHHHHHHhHHHHHHhhhhhchhhH--HHHHHHHHhhhhhH
Q 021465           47 LLEDKI-----AVQAAEIERLARDNHRLAASH--ITMREDLAAAQQEIPRIKAHIRNIHTESDS--HIRVLLDKIAKMEA  117 (312)
Q Consensus        47 ~lE~~l-----~~q~~Ei~~L~~dNqrLa~th--~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~--qiR~L~ek~~k~Ea  117 (312)
                      -||+=|     |....=|.+=--=||-|--.-  --+-.|+.-++.||...+.-+.-.-++.--  +.+++-.+..++|.
T Consensus       373 ~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~iee  452 (1041)
T KOG0243|consen  373 NLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEE  452 (1041)
T ss_pred             cHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHH
Confidence            667665     334444555555566653211  112223333333333334444444444422  44455566666666


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          118 DCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       118 elra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      .-..++.++.+|.+++.......-..+.|..+...+...|....          .++..++.|++.++..
T Consensus       453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~----------~el~~~~ee~~~~~~~  512 (1041)
T KOG0243|consen  453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN----------KELESLKEELQQAKAT  512 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence            66677888888888888888778888888888888888777655          5666677777766665

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.39  E-value=1.7  Score=38.45  Aligned_cols=10  Identities=20%  Similarity=0.441  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 021465          150 IQQASEALHK  159 (312)
Q Consensus       150 vq~l~~EL~r  159 (312)
                      ++.++.++.+
T Consensus       160 ~~~~~~~~~~  169 (191)
T PF04156_consen  160 VQELRSQLER  169 (191)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=0.76  Score=39.24  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++++++......++++|+++|..+-
T Consensus        87 ~tLekQe~~l~e~l~eLq~~i~~~l  111 (119)
T COG1382          87 KTLEKQEEKLQERLEELQSEIQKAL  111 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666667777777777777654

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=94.34  E-value=3.1  Score=41.49  Aligned_cols=136  Identities=15%  Similarity=0.275  Sum_probs=65.2

Q ss_pred             HHHHhHHHHHHhh-hhhchhhHHHHHHHHHhhhhhHhh-hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 021465           83 AQQEIPRIKAHIR-NIHTESDSHIRVLLDKIAKMEADC-KAGERLKKDLQQAHIEAQS----LARARQELTSKIQQASEA  156 (312)
Q Consensus        83 aq~Elq~L~~~~~-~~~ae~e~qiR~L~ek~~k~Eael-ra~e~lk~EL~q~r~e~q~----L~~~rqeL~aevq~l~~E  156 (312)
                      =+.|+.|+.-.+. .++++. -.=|..+++..++-..+ .....++..|..++.++.+    +.+--+-|-.++..+.++
T Consensus       196 WklEvERV~PqLKv~~~~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~e  274 (359)
T PF10498_consen  196 WKLEVERVLPQLKVTIRADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQE  274 (359)
T ss_pred             HHHHHHHHhhhheeeccCCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3455555544432 334444 45566666666555333 2233344444444433322    222222222222222222


Q ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHH---------HHHHHHHHHHHHHHH
Q 021465          157 LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKN---------LVGMAREMEKLHAEV  223 (312)
Q Consensus       157 L~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEkn---------L~~marEvekLrAEI  223 (312)
                                .-..+.+|..++.++..+...+..-....++..+++    +.|+..         |+.+.+-+.||+.||
T Consensus       275 ----------Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI  344 (359)
T PF10498_consen  275 ----------YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI  344 (359)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence                      223334555555555555555554444444444444    444433         566677888888888


Q ss_pred             HHHHHh
Q 021465          224 VNAEMR  229 (312)
Q Consensus       224 anaekr  229 (312)
                      ..++-|
T Consensus       345 ~qMdvr  350 (359)
T PF10498_consen  345 KQMDVR  350 (359)
T ss_pred             HHhhhh
Confidence            887755

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.33  E-value=8.4  Score=40.83  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        50 ~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      +++.....++..+..+=+.+......++.++..++.+++.+..
T Consensus       209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555565555555555555544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.27  E-value=3.2  Score=44.47  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh
Q 021465           71 ASHITMREDLAAAQQEIPRIKAHIRNIHTESD  102 (312)
Q Consensus        71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e  102 (312)
                      .+..-|...|..++++|+.....+...+.++.
T Consensus       194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~  225 (754)
T TIGR01005       194 AAADFLAPEIADLSKQSRDAEAEVAAYRAQSD  225 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34555666666666666666666666665553

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=94.24  E-value=5.6  Score=38.44  Aligned_cols=134  Identities=15%  Similarity=0.152  Sum_probs=71.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTS  148 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~a  148 (312)
                      |.+.++.|++.+-.++-+.|+|..-.-.++-..|.|.-..|.....||-|+.-.-++|   +|+|--|+           
T Consensus        50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik---eql~kyiR-----------  115 (333)
T KOG1853|consen   50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK---EQLRKYIR-----------  115 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----------
Confidence            4455666666666677777777666666666666676666666655554443333332   22233333           


Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHH-HHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          149 KIQQASEALHKARLEVKNLPDLHAELD-SLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       149 evq~l~~EL~r~kad~qql~alraELe-~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++.....+|++++-   ...-.-.+++ .|.|-| ..-+-+|.|..++.-+++.+|-+       ..|.--||.||+-..
T Consensus       116 eLEQaNDdLErakR---ati~sleDfeqrLnqAI-ErnAfLESELdEke~llesvqRL-------kdEardlrqelavr~  184 (333)
T KOG1853|consen  116 ELEQANDDLERAKR---ATIYSLEDFEQRLNQAI-ERNAFLESELDEKEVLLESVQRL-------KDEARDLRQELAVRT  184 (333)
T ss_pred             HHHHhccHHHHhhh---hhhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            35555666766663   1111222222 122222 22233666776666677666543       446667777777444

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.23  E-value=0.4  Score=37.07  Aligned_cols=64  Identities=23%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHH
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQ  130 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~  130 (312)
                      ++|.+...+|+..|..+...+...-..+..|..|+|.=++.|-++..........++.+++||+
T Consensus         1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~   64 (69)
T PF14197_consen    1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE   64 (69)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777778888888877777777777788888888888777766555543344444444443

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=94.20  E-value=3.2  Score=37.70  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       203 qaMEknL~~marEvekLrA  221 (312)
                      ..++..|..+..+.+.|.+
T Consensus       122 ~~l~~kl~e~k~k~~~l~a  140 (221)
T PF04012_consen  122 EELEAKLEELKSKREELKA  140 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.18  E-value=6.7  Score=43.95  Aligned_cols=128  Identities=15%  Similarity=0.234  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhhhhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccchhHHHHHH
Q 021465          104 HIRVLLDKIAKMEAD----CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV----KNLPDLHAELD  175 (312)
Q Consensus       104 qiR~L~ek~~k~Eae----lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~----qql~alraELe  175 (312)
                      ..++...+.-++|.+    ....+.+++.+.++..+...|...-.+|...++.++.|.+..+++-    ++...|.-++.
T Consensus       231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k  310 (1200)
T KOG0964|consen  231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK  310 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            334444444444444    3455667888888888888888888888888888888777766642    22233334445


Q ss_pred             HHHHHHHHHHHH-------HHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          176 SLRQEHRRLRAT-------FEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       176 ~LrqElq~~Raa-------iE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      .+++++..-+..       +..-+..-++..+++...+..+.++..+-..++..|+..+++.+
T Consensus       311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~  373 (1200)
T KOG0964|consen  311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR  373 (1200)
T ss_pred             HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            555444332221       11122223444455566777777777777778888877775443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.13  E-value=3.2  Score=40.29  Aligned_cols=77  Identities=19%  Similarity=0.279  Sum_probs=46.5

Q ss_pred             hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021465          115 MEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGL  194 (312)
Q Consensus       115 ~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~  194 (312)
                      .|.+....-.||.|..-+--.+..|...|+.|..+++.-...+.-...   ++...+..|+.|.+|+-+++..+|.-...
T Consensus        55 ~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg---Ql~s~Kkqie~Leqelkr~KsELErsQ~~  131 (307)
T PF10481_consen   55 VEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG---QLNSCKKQIEKLEQELKRCKSELERSQQA  131 (307)
T ss_pred             HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444445555555555555555555566565555555555544444   66777777888888888888777764433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PRK00106 hypothetical protein; Provisional

Probab=94.07  E-value=7.6  Score=40.81  Aligned_cols=37  Identities=11%  Similarity=0.080  Sum_probs=22.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      +|.....+|+..+++++..+..++.........|++.
T Consensus       126 eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~  162 (535)
T PRK00106        126 TLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERV  162 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555566666666666666666665555555555555

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=94.07  E-value=7.3  Score=44.30  Aligned_cols=46  Identities=15%  Similarity=0.258  Sum_probs=21.4

Q ss_pred             hhHHHHHHHHHHHHh----hhhhhhhhhh---hHHHHHHHHHHHHHHhHHHHH
Q 021465           47 LLEDKIAVQAAEIER----LARDNHRLAA---SHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~----L~~dNqrLa~---th~~L~qeL~aaq~Elq~L~~   92 (312)
                      =||+++..-..+++.    |...|-++..   ++..+-|....+++.++.++.
T Consensus       106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~  158 (1109)
T PRK10929        106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIER  158 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence            677777544444332    2334444433   332233333555555555544

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=94.01  E-value=4  Score=40.51  Aligned_cols=121  Identities=18%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhh----------------------
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADC----------------------  119 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eael----------------------  119 (312)
                      .-|......++++|..++..|+..+....-+..+.     ..++.+|..+.....+++                      
T Consensus       174 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (444)
T TIGR03017       174 LWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIAN  253 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcC
Confidence            55788888899999999999999877554443221     122333322222221111                      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465          120 KAGERLKKDLQQAHIEAQSLARAR-------QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~r-------qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE  189 (312)
                      .....++.++.+++.++..|...=       +.|-.++..+++.|.+.-.  +-+..+..+++.+++....+++.++
T Consensus       254 ~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~--~~~~~~~~~~~~~~~~~~~l~~~l~  328 (444)
T TIGR03017       254 PIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIK--KVTSSVGTNSRILKQREAELREALE  328 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            124568888888887777765421       2334444444444433221  1123334445555555555555544

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=93.98  E-value=5.2  Score=37.13  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          131 QAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      .++.+-|++.+.+..-..++.....+|++.+.
T Consensus       126 ~l~~~eqry~aLK~hAeekL~~ANeei~~v~~  157 (207)
T PF05010_consen  126 RLKKEEQRYQALKAHAEEKLEKANEEIAQVRS  157 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666654

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.95  E-value=8.9  Score=39.67  Aligned_cols=60  Identities=20%  Similarity=0.306  Sum_probs=31.9

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh------------hHHHHHHHHHhhhhhHhh
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES------------DSHIRVLLDKIAKMEADC  119 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~------------e~qiR~L~ek~~k~Eael  119 (312)
                      ...+-.+--+ -..+..|+++|.++-+|+++--.....++.|.            ...|-++...++|.++|+
T Consensus       334 l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI  405 (521)
T KOG1937|consen  334 LKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDI  405 (521)
T ss_pred             HhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3334444444 34467777888888888874433334444443            233444445555555553

>TIGR00634 recN DNA repair protein RecN

Probab=93.94  E-value=2.7  Score=43.81  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=26.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      .++.+...++.+++|+..+...-+    ...++-+++...++++...+.++-++|...+.
T Consensus       323 s~e~l~~~~~~l~~eL~~l~~~~~----~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~  378 (563)
T TIGR00634       323 SVEEVLEYAEKIKEELDQLDDSDE----SLEALEEEVDKLEEELDKAAVALSLIRRKAAE  378 (563)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555544333211    12223333455555555556666666555543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.77  E-value=10  Score=39.76  Aligned_cols=84  Identities=19%  Similarity=0.221  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKARLEVKN--LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       146 L~aevq~l~~EL~r~kad~qq--l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEI  223 (312)
                      +..+++.+++.|......+.+  +......++.+..+|..+-..+|.|.+++...-+....+...+..+.+....|..|+
T Consensus       250 i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~  329 (560)
T PF06160_consen  250 IEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEEL  329 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555544433  356667778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHh
Q 021465          224 VNAEMR  229 (312)
Q Consensus       224 anaekr  229 (312)
                      ......
T Consensus       330 ~~v~~s  335 (560)
T PF06160_consen  330 ERVSQS  335 (560)
T ss_pred             HHHHHh
Confidence            766543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.77  E-value=3.3  Score=44.87  Aligned_cols=20  Identities=0%  Similarity=0.215  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAE  222 (312)
Q Consensus       203 qaMEknL~~marEvekLrAE  222 (312)
                      ..+-.++..|-.++..|+..
T Consensus       695 ~~~~~~I~~~v~~ik~i~~~  714 (717)
T PF10168_consen  695 KQQGEEIDELVKQIKNIKKI  714 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            44444455555555554443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=93.69  E-value=0.48  Score=35.94  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          114 KMEADCKAGERLKKDLQQAHIEAQSLARARQE  145 (312)
Q Consensus       114 k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqe  145 (312)
                      -||+++|+-+.+..||..++.....+...=++
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqe   36 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQE   36 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999888766654443333

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.66  E-value=1.1  Score=41.27  Aligned_cols=23  Identities=9%  Similarity=0.192  Sum_probs=10.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHH
Q 021465           68 RLAASHITMREDLAAAQQEIPRI   90 (312)
Q Consensus        68 rLa~th~~L~qeL~aaq~Elq~L   90 (312)
                      .+..-...|+++|+.++.+|..+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~  112 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNI  112 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555555555444443

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=93.63  E-value=7.5  Score=37.82  Aligned_cols=135  Identities=14%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhch----hhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           76 MREDLAAAQQEIPRIKAHIRNIHTE----SDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQ  151 (312)
Q Consensus        76 L~qeL~aaq~Elq~L~~~~~~~~ae----~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq  151 (312)
                      .+.-|..--+||+.-+.....+-..    .|+-.|++.-|-..|+|--|.++-+..|- -+++-||.....-|.+.+++.
T Consensus        51 ~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ek-vlk~aIq~i~~~~q~~~~~Ln  129 (338)
T KOG3647|consen   51 YRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEK-VLKSAIQAIQVRLQSSRAQLN  129 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3444777777887776655554332    27777888888888887777666543221 123333333333233333333


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH--------------HHHHHHhhcHHhHHHHHHHHHHHHHHHH
Q 021465          152 QASEALHKARLEVKNLPDLHAELDSLRQEHRRLRA--------------TFEYEKGLNIDNVEQLQAMEKNLVGMAR  214 (312)
Q Consensus       152 ~l~~EL~r~kad~qql~alraELe~LrqElq~~Ra--------------aiE~EKk~~~elleq~qaMEknL~~mar  214 (312)
                      ....+.+.+-+   +|+--|+|++..|+-++.+++              .+...-..|+....-+..+++.++..++
T Consensus       130 nvasdea~L~~---Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r  203 (338)
T KOG3647|consen  130 NVASDEAALGS---KIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR  203 (338)
T ss_pred             HHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            33333322222   333344444444444333332              1111112234444455677777777666

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.62  E-value=5.5  Score=36.17  Aligned_cols=28  Identities=0%  Similarity=0.236  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      ..|+|.|-..+++|..++..+..+.+..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~   53 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQ   53 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555444444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.57  E-value=5.8  Score=36.32  Aligned_cols=97  Identities=14%  Similarity=0.276  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465           53 AVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQA  132 (312)
Q Consensus        53 ~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~  132 (312)
                      +.-..++..+..+|++|..-+..+++++..++.+|......-.        .+..+-.+...++.++   ..|+-|-+.+
T Consensus        44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~--------~L~~~k~rl~~~ek~l---~~Lk~e~evL  112 (201)
T PF13851_consen   44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ--------SLQNLKARLKELEKEL---KDLKWEHEVL  112 (201)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            3344467777888888887777777777777666665544322        2223333344444333   3466677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKA  160 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~  160 (312)
                      .....++...|.+|.......-.|+.+.
T Consensus       113 ~qr~~kle~ErdeL~~kf~~~i~evqQk  140 (201)
T PF13851_consen  113 EQRFEKLEQERDELYRKFESAIQEVQQK  140 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777778888888887777777777553

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=93.54  E-value=9  Score=43.08  Aligned_cols=97  Identities=16%  Similarity=0.181  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---cccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465          126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL----E---VKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN  198 (312)
Q Consensus       126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka----d---~qql~alraELe~LrqElq~~RaaiE~EKk~~~el  198 (312)
                      ..++..++..++.+......+.+.+..+.+.|.....    +   --.++.+.+.+..+++++..++..+..    ....
T Consensus       776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~  851 (1047)
T PRK10246        776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGE----IRQQ  851 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence            3456667777777777777777766666656654111    0   124566677777777776666655321    1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          199 VEQLQAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       199 leq~qaMEknL~~marEvekLrAEIana  226 (312)
                      +...+...+.+..+..+++.++.+...+
T Consensus       852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  879 (1047)
T PRK10246        852 LKQDADNRQQQQALMQQIAQATQQVEDW  879 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444555555444433

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=93.52  E-value=6.7  Score=39.05  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEI  223 (312)
                      ...+.++.....++.+++..+
T Consensus       230 ~~~~~~l~~~~~~l~~~~~~l  250 (421)
T TIGR03794       230 ETVEARIKEARYEIEELENKL  250 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555444

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=93.50  E-value=11  Score=39.20  Aligned_cols=31  Identities=13%  Similarity=-0.022  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ..++.+..+-.+.|.++..+.+.-.++-.++
T Consensus       154 ~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i  184 (475)
T PRK10361        154 RQVQDSFGKEAQERHTLAHEIRNLQQLNAQM  184 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344444444433333333333

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=93.49  E-value=4.2  Score=40.48  Aligned_cols=84  Identities=21%  Similarity=0.296  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhh--hchhhHHHHHHHHHhhhhhHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNI--HTESDSHIRVLLDKIAKMEADC----KAGERLKKDLQQAHIEAQSLARARQEL  146 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~--~ae~e~qiR~L~ek~~k~Eael----ra~e~lk~EL~q~r~e~q~L~~~rqeL  146 (312)
                      +..+++.|..+..++..+...-..+  .++.+..|-+||+..-+++.-.    .-++.|| -|..+|.++..|...=..|
T Consensus       263 Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~~lH~~a~~~~~~l~~l  341 (388)
T PF04912_consen  263 LDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLKSLHEEAAEFSQTLSEL  341 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777665544433  4455778888888888887654    3455566 6666677766655444444


Q ss_pred             HHHHHHHHHHH
Q 021465          147 TSKIQQASEAL  157 (312)
Q Consensus       147 ~aevq~l~~EL  157 (312)
                      -.....+..+|
T Consensus       342 e~~q~~l~~~l  352 (388)
T PF04912_consen  342 ESQQSDLQSQL  352 (388)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=93.47  E-value=7.6  Score=37.98  Aligned_cols=102  Identities=18%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHH
Q 021465           54 VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAH  133 (312)
Q Consensus        54 ~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r  133 (312)
                      .-.+|++.+-.+-..|++--+.|+..|++++.|++-|.+-.-+.+.|.--+...|.+-+          +..|.+-.+++
T Consensus        34 iL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i----------~etkeeNlkLr  103 (389)
T KOG4687|consen   34 ILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADI----------EETKEENLKLR  103 (389)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHH----------HHHHHHhHhhh
Confidence            33455666666667777878888888888888888776655555544433333343333          55666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          134 IEAQSLARARQELTSKIQQASEALHKARLEVK  165 (312)
Q Consensus       134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~q  165 (312)
                      .|.+.|.-+..+|......+++..+..+.+++
T Consensus       104 Td~eaL~dq~adLhgD~elfReTeAq~ese~~  135 (389)
T KOG4687|consen  104 TDREALLDQKADLHGDCELFRETEAQFESEKM  135 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence            77777777777777777777777766665443

>PF15294 Leu_zip: Leucine zipper

Probab=93.45  E-value=1.9  Score=41.78  Aligned_cols=139  Identities=19%  Similarity=0.319  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhc------------hhhHHHHHHHHHhhhhhHhh
Q 021465           52 IAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHT------------ESDSHIRVLLDKIAKMEADC  119 (312)
Q Consensus        52 l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~a------------e~e~qiR~L~ek~~k~Eael  119 (312)
                      .+....||.+|-.||..|..-...++..-..+-+|=-.|.+.+.+++.            -++.++-+|..+.+.+    
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l----  202 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL----  202 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH----
Confidence            456778999999999888776666666554444444444433333332            2344555555554333    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV  199 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell  199 (312)
                            |.++++.   ++.....-+.|-..++.-+.+|-+.+.   ++.....                +.|+|.  ...
T Consensus       203 ------K~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qe---qL~~aek----------------eLekKf--qqT  252 (278)
T PF15294_consen  203 ------KSELEKA---LQDKESQQKALEETLQSCKHELLRVQE---QLSLAEK----------------ELEKKF--QQT  252 (278)
T ss_pred             ------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcch---hhhcchh----------------hHHHHh--Ccc
Confidence                  3333333   222223334444445555555555443   1222222                222322  234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIa  224 (312)
                      .+-.-|..-|..-..++..||..|+
T Consensus       253 ~ay~NMk~~ltkKn~QiKeLRkrl~  277 (278)
T PF15294_consen  253 AAYRNMKEILTKKNEQIKELRKRLA  277 (278)
T ss_pred             HHHHHhHHHHHhccHHHHHHHHHhc
Confidence            4455666666666777777777654

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=93.43  E-value=0.18  Score=55.49  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             HHHHHHHHHH---HHhhcHHhHHHHHHHHHHHHHHHHHHHH
Q 021465          181 HRRLRATFEY---EKGLNIDNVEQLQAMEKNLVGMAREMEK  218 (312)
Q Consensus       181 lq~~RaaiE~---EKk~~~elleq~qaMEknL~~marEvek  218 (312)
                      |-.+|+++|.   |--.+-+.+.|+.--...|..|-|++-.
T Consensus      1098 ItgLr~AmEaLvvev~knPaiIsqLdpvnarllnmiRdIs~ 1138 (1282)
T KOG0921|consen 1098 ITGLRPAMEALVVEVCKNPAIISQLDPVNARLLNMIRDISR 1138 (1282)
T ss_pred             HhhhHHHHHHHHHHHhcChhHhhccCchhHHHHHHHHHhcc
Confidence            3445555443   5556677777877777777777776543

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=93.41  E-value=5.4  Score=35.49  Aligned_cols=23  Identities=13%  Similarity=0.398  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIan  225 (312)
                      ..++..+..+..++|.++-++-+
T Consensus       134 ~ki~~ei~~lr~~iE~~K~~~lr  156 (177)
T PF07798_consen  134 NKIDTEIANLRTEIESLKWDTLR  156 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666667777777766654

>PRK11281 hypothetical protein; Provisional

Probab=93.41  E-value=7.8  Score=44.09  Aligned_cols=27  Identities=15%  Similarity=0.343  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNIHT   99 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~~a   99 (312)
                      ...|++.|..+.++++.....+.+++.
T Consensus        82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~  108 (1113)
T PRK11281         82 TEQLKQQLAQAPAKLRQAQAELEALKD  108 (1113)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            344444455554555444444444443

>TIGR00634 recN DNA repair protein RecN

Probab=93.41  E-value=11  Score=39.19  Aligned_cols=17  Identities=29%  Similarity=0.485  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021465          208 NLVGMAREMEKLHAEVV  224 (312)
Q Consensus       208 nL~~marEvekLrAEIa  224 (312)
                      ++..+..++++++.++.
T Consensus       347 ~le~L~~el~~l~~~l~  363 (563)
T TIGR00634       347 SLEALEEEVDKLEEELD  363 (563)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333344444444433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.38  E-value=4.7  Score=34.66  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          173 ELDSLRQEHRRLRATFEYE  191 (312)
Q Consensus       173 ELe~LrqElq~~RaaiE~E  191 (312)
                      |+..++.-++..++.++.|
T Consensus       116 e~~klk~~~~~~~tq~~~e  134 (151)
T PF11559_consen  116 ELQKLKNQLQQRKTQYEHE  134 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=93.33  E-value=16  Score=40.56  Aligned_cols=37  Identities=14%  Similarity=0.089  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHH
Q 021465          170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAME  206 (312)
Q Consensus       170 lraELe~LrqElq~~RaaiE~EKk~~~elleq~qaME  206 (312)
                      +-.+|+.--.++...++.+..|+....+++..++.|-
T Consensus       264 sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeL  300 (1265)
T KOG0976|consen  264 SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEEL  300 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            3344444445566667777778877777776664443

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=93.30  E-value=4.6  Score=36.86  Aligned_cols=97  Identities=14%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhc----HHhHHHH
Q 021465          127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLN----IDNVEQL  202 (312)
Q Consensus       127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~----~elleq~  202 (312)
                      .||.++..++++|...-|.|....-....||.-+.+-+ .+|.++.+|..|++|....|..++.-|.+.    .+-.+++
T Consensus        79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v  157 (201)
T KOG4603|consen   79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV  157 (201)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            47777778888777777777766666666666666533 779999999999999999999988877765    3555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIa  224 (312)
                      ..+-++...+=+....+=.+|-
T Consensus       158 ~~~y~~~~~~wrk~krmf~ei~  179 (201)
T KOG4603|consen  158 YREYQKYCKEWRKRKRMFREII  179 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556666555555555554

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.30  E-value=11  Score=38.89  Aligned_cols=25  Identities=8%  Similarity=0.223  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++|.+-+-+...-+-|.+++|.+..
T Consensus       385 k~ytqrikEi~gniRKq~~DI~Kil  409 (521)
T KOG1937|consen  385 KVYTQRIKEIDGNIRKQEQDIVKIL  409 (521)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5555555555555555555555443

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.18  E-value=7.5  Score=36.47  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK  126 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk  126 (312)
                      -|+-.++--..+++.+.....--......++.++..+..|+..|..           ++.....++-++.   ...+.+.
T Consensus        21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~-----------k~~~~~~~~~~l~---~~t~~t~   86 (264)
T PF06008_consen   21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQE-----------KATKVSRKAQQLN---NNTERTL   86 (264)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH---HHHHHHH
Confidence            5566666666677766665544444455566666666666666655           3333333333322   3334455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-----HHHHHHHHHHHhhcHHhHHH
Q 021465          127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEH-----RRLRATFEYEKGLNIDNVEQ  201 (312)
Q Consensus       127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqEl-----q~~RaaiE~EKk~~~elleq  201 (312)
                      ....++...++++...=++|+.++..+..+..  ......+....+|++.|=+|+     ...+...+.|++...+++..
T Consensus        87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~--~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~  164 (264)
T PF06008_consen   87 QRAQDLEQFIQNLQDNIQELIEQVESLNENGD--QLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSR  164 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccC--CCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555544110  001122333334443333333     34444455566666666665


Q ss_pred             H
Q 021465          202 L  202 (312)
Q Consensus       202 ~  202 (312)
                      +
T Consensus       165 v  165 (264)
T PF06008_consen  165 V  165 (264)
T ss_pred             H
Confidence            5

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.15  E-value=7.2  Score=36.20  Aligned_cols=24  Identities=17%  Similarity=0.414  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIana  226 (312)
                      ...+++...+.++++.|..+|...
T Consensus       193 e~aE~~v~~Le~~id~le~eL~~~  216 (237)
T PF00261_consen  193 EFAERRVKKLEKEIDRLEDELEKE  216 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=93.15  E-value=1.1  Score=34.72  Aligned_cols=61  Identities=23%  Similarity=0.241  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRA  186 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Ra  186 (312)
                      ..|+..|.++..++.......+.|..+-......|..+..   .+..|++|++.|++|+++.|+
T Consensus         8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~---e~~~Lk~E~e~L~~el~~~r~   68 (69)
T PF14197_consen    8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE---ENNKLKEENEALRKELEELRA   68 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence            3456666666666666555556666655555555555554   556666888888888877764

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=93.09  E-value=1.7  Score=46.08  Aligned_cols=24  Identities=13%  Similarity=0.250  Sum_probs=10.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE  189 (312)
                      ++.++..+|+.|+.+|+..+..+|
T Consensus       475 ei~~~~~~I~~L~~~L~e~~~~ve  498 (652)
T COG2433         475 EIRARDRRIERLEKELEEKKKRVE  498 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433

>PRK12704 phosphodiesterase; Provisional

Probab=93.06  E-value=13  Score=38.85  Aligned_cols=11  Identities=27%  Similarity=0.607  Sum_probs=4.6

Q ss_pred             HHHHHhHHHHH
Q 021465           82 AAQQEIPRIKA   92 (312)
Q Consensus        82 aaq~Elq~L~~   92 (312)
                      .+++|+...+.
T Consensus        61 eaeeE~~~~R~   71 (520)
T PRK12704         61 EAKEEIHKLRN   71 (520)
T ss_pred             HHHHHHHHHHH
Confidence            34444444433

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.01  E-value=12  Score=38.39  Aligned_cols=46  Identities=24%  Similarity=0.316  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcHHhHHHH-------HHHHHHHHHHHHHHHHHH
Q 021465          175 DSLRQEHRRLRATFEYEKGLNIDNVEQL-------QAMEKNLVGMAREMEKLH  220 (312)
Q Consensus       175 e~LrqElq~~RaaiE~EKk~~~elleq~-------qaMEknL~~marEvekLr  220 (312)
                      +.++.|++-+|..++.|.-...++-.++       ...+..+.++..+.+.|.
T Consensus       437 e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~  489 (542)
T KOG0993|consen  437 EDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH  489 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            4566777777777777777776666665       556666777777777775

>PRK11519 tyrosine kinase; Provisional

Probab=92.99  E-value=2.4  Score=45.56  Aligned_cols=48  Identities=10%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhh
Q 021465           72 SHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADC  119 (312)
Q Consensus        72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eael  119 (312)
                      +..=|++.|..++++|......+.+.+.++     +.+.+.+++....+++.+
T Consensus       268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql  320 (719)
T PRK11519        268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQL  320 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444333     233444445544444433

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=92.94  E-value=3.2  Score=37.85  Aligned_cols=103  Identities=15%  Similarity=0.180  Sum_probs=51.9

Q ss_pred             HHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           79 DLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH  158 (312)
Q Consensus        79 eL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~  158 (312)
                      +|+.+..+|++|.+           +++.|-+.+.-+|||++++...= -+++.+-+++       +|-.++...++.|.
T Consensus        80 el~~ld~~i~~l~e-----------k~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~-------~L~kev~~~~erl~  140 (201)
T KOG4603|consen   80 ELQVLDGKIVALTE-----------KVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQ-------ELKKEVAGYRERLK  140 (201)
T ss_pred             HHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            45555555555544           66666677777777776655543 2333333333       34444555555555


Q ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          159 KARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       159 r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ..++-.  ...-..+.++...+.++.=...-..+.-+.+.++.+
T Consensus       141 ~~k~g~--~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~  182 (201)
T KOG4603|consen  141 NIKAGT--NHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKL  182 (201)
T ss_pred             HHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544311  111123444555555555555554555555555554

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=92.90  E-value=12  Score=42.97  Aligned_cols=21  Identities=14%  Similarity=0.406  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEI  223 (312)
                      ...+..|..+..+++.+...|
T Consensus      1727 ~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1727 EDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             HHHHHHhhhHHHHHHHHHHHH
Confidence            333444444444544444444

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.88  E-value=8.1  Score=36.03  Aligned_cols=77  Identities=17%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHH
Q 021465          132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG  211 (312)
Q Consensus       132 ~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~  211 (312)
                      .+.++.++..++++|..++..+.++++..+.   ....+...++.+++++..+...++.-.+...++.--+..|-..|..
T Consensus        40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~---~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~  116 (251)
T PF11932_consen   40 SQKRIDQWDDEKQELLAEYRQLEREIENLEV---YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ  116 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666666666665   4455555566666666666666666666665555555555555554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=92.88  E-value=0.67  Score=48.98  Aligned_cols=61  Identities=25%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRA  186 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Ra  186 (312)
                      +.++.-+.-+.-|+..|.+-||+|-.++..++..++..|.   .|+.-+.||.+|+-+++.++-
T Consensus        82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~---~i~~~q~eL~~Lk~~ieqaq~  142 (907)
T KOG2264|consen   82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKR---LIPQKQLELSALKGEIEQAQR  142 (907)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHhHHHHHHHHhHHHHHHH
Confidence            3344455555555555555565555555555444444331   333333444444444444443

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=92.86  E-value=14  Score=38.61  Aligned_cols=11  Identities=36%  Similarity=0.462  Sum_probs=5.6

Q ss_pred             ccccccCCCCC
Q 021465          302 VGAVWGGSYDP  312 (312)
Q Consensus       302 ~~~~~~~~~d~  312 (312)
                      +.++...+|||
T Consensus       244 p~~v~ls~fdp  254 (514)
T TIGR03319       244 PEAVILSGFDP  254 (514)
T ss_pred             CCeEEecCCch
Confidence            44444555555

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=92.82  E-value=8.5  Score=36.12  Aligned_cols=46  Identities=13%  Similarity=0.182  Sum_probs=23.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      -|+..+......+..-..+=+.|...-....+.-..+...|+.+..
T Consensus        56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~  101 (264)
T PF06008_consen   56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD  101 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666555555555555555554444444444444444444433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.81  E-value=1.7  Score=40.17  Aligned_cols=28  Identities=11%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhch
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNIHTE  100 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae  100 (312)
                      ...++..|..+++||..|...+.++..+
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~~~~  115 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNIDNT  115 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4466777788888887777755555544

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.73  E-value=13  Score=39.45  Aligned_cols=80  Identities=18%  Similarity=0.339  Sum_probs=42.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh------------------hHHHHHHHHHhhhhhHhhhhhHHH
Q 021465           64 RDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES------------------DSHIRVLLDKIAKMEADCKAGERL  125 (312)
Q Consensus        64 ~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~------------------e~qiR~L~ek~~k~Eaelra~e~l  125 (312)
                      .+-.-|--....|+-++-.+.+||..++.+....++-+                  -..=-.+..|+.+||.||+   .+
T Consensus        43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLK---q~  119 (772)
T KOG0999|consen   43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELK---QL  119 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HH
Confidence            33344445555566677777778877777666544332                  1112234466777777764   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021465          126 KKDLQQAHIEAQSLARARQEL  146 (312)
Q Consensus       126 k~EL~q~r~e~q~L~~~rqeL  146 (312)
                      +++|..++.|..+|...-+++
T Consensus       120 r~el~~~q~E~erl~~~~sd~  140 (772)
T KOG0999|consen  120 RQELTNVQEENERLEKVHSDL  140 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444444443333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=92.71  E-value=8.9  Score=42.03  Aligned_cols=81  Identities=21%  Similarity=0.291  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHH
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGM  212 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~m  212 (312)
                      +.++..+......+-.+++.++.-......   +++.+.+|+..++..+..+...|+.|+....+....-+.++.+|.++
T Consensus       637 q~eL~~~keS~s~~E~ql~~~~e~~e~le~---~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~  713 (769)
T PF05911_consen  637 QSELESAKESNSLAETQLKAMKESYESLET---RLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM  713 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence            333333344444444444444433333333   55666788888888888888888888888888888888887777777


Q ss_pred             HHHH
Q 021465          213 AREM  216 (312)
Q Consensus       213 arEv  216 (312)
                      ..+.
T Consensus       714 ~~~~  717 (769)
T PF05911_consen  714 KKEE  717 (769)
T ss_pred             hccc
Confidence            7654

The function of this family is unknown.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=92.68  E-value=17  Score=39.37  Aligned_cols=29  Identities=10%  Similarity=0.140  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      ..+.++.-.+..|.++|+..+....+...
T Consensus       597 e~~~~k~~rleEE~e~L~~kle~~k~~~~  625 (698)
T KOG0978|consen  597 EIEKFKRKRLEEELERLKRKLERLKKEES  625 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            44555555555566666666655444333

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=92.66  E-value=5.2  Score=41.83  Aligned_cols=56  Identities=21%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIana  226 (312)
                      ..+..+|..+.+.+.+++..++.-++-|.+||   ..|-.-|++|...+.+-+.+|.+.
T Consensus       458 ~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL---s~MSEHLasmNeqL~~Q~eeI~~L  513 (518)
T PF10212_consen  458 ESLEEELKEANQNISRLQDELETTRRNYEEQL---SMMSEHLASMNEQLAKQREEIQTL  513 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666667777777776666666666544   444445555555555555555443

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=92.66  E-value=3.5  Score=45.01  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          114 KMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       114 k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      ++|..+..++..+.++++.+.++.++...-+++..+++...++|.+.+
T Consensus       517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~  564 (782)
T PRK00409        517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEE  564 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555554444

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=92.66  E-value=9.9  Score=36.50  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          208 NLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       208 nL~~marEvekLrAEIanaekra~  231 (312)
                      .+..+..+|.+|++|+......++
T Consensus       201 ~i~el~e~I~~L~~eV~~L~~~~~  224 (258)
T PF15397_consen  201 EIDELEEEIPQLRAEVEQLQAQAQ  224 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345566677788888877766555

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=92.64  E-value=2.5  Score=42.66  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      +..+.+.+.+++++.+..+..++....++..|..|++..|..
T Consensus       347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~  388 (458)
T COG3206         347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSL  388 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444443

>PRK00106 hypothetical protein; Provisional

Probab=92.62  E-value=15  Score=38.60  Aligned_cols=11  Identities=27%  Similarity=0.368  Sum_probs=5.3

Q ss_pred             ccccccCCCCC
Q 021465          302 VGAVWGGSYDP  312 (312)
Q Consensus       302 ~~~~~~~~~d~  312 (312)
                      +.++...+|||
T Consensus       265 p~~v~lS~fdp  275 (535)
T PRK00106        265 PEVVVLSGFDP  275 (535)
T ss_pred             CCeEEEeCCCh
Confidence            34444555555

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=92.58  E-value=1  Score=35.74  Aligned_cols=58  Identities=21%  Similarity=0.406  Sum_probs=37.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHH-HHHHHhhcHHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 021465          167 LPDLHAELDSLRQEHRRLRAT-FEYEKGLNIDNVEQLQAMEKNLVGMAR-----------EMEKLHAEVVN  225 (312)
Q Consensus       167 l~alraELe~LrqElq~~Raa-iE~EKk~~~elleq~qaMEknL~~mar-----------EvekLrAEIan  225 (312)
                      |+++|+|.+.+-+|+...+.. -+||.| ...++.+++.+.+.+-.|..           ||.+|+.+|.+
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~k-i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~   75 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQKDEYEHK-INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456777888888887777776 555555 55666666555555555544           56666666553

; PDB: 3VP9_B 3VP8_B.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=92.54  E-value=7.6  Score=36.93  Aligned_cols=14  Identities=29%  Similarity=0.273  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHH
Q 021465          214 REMEKLHAEVVNAE  227 (312)
Q Consensus       214 rEvekLrAEIanae  227 (312)
                      .+++.+++.+..++
T Consensus       186 ~~~~~~~~~l~~a~  199 (327)
T TIGR02971       186 AEVKSALEAVQQAE  199 (327)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444443

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=92.50  E-value=6.4  Score=42.81  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=20.1

Q ss_pred             hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS  154 (312)
Q Consensus       116 Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~  154 (312)
                      |...+..+.+|+.|.+.+.+-.+|......|..++..|+
T Consensus       219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333344455555555555555555555555555555555

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=92.45  E-value=2.5  Score=35.94  Aligned_cols=43  Identities=16%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             HHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465          188 FEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRG  230 (312)
Q Consensus       188 iE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra  230 (312)
                      +++-++....+-++++.+++++....++++++...+..+..+.
T Consensus        96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~  138 (140)
T PRK03947         96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444555667888888888888888888887766543

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=92.44  E-value=4.1  Score=40.49  Aligned_cols=77  Identities=17%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHH-------------HHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHH
Q 021465          149 KIQQASEALHKARLEVKNLPDLHAELDSLR-------------QEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAR  214 (312)
Q Consensus       149 evq~l~~EL~r~kad~qql~alraELe~Lr-------------qElq~~RaaiE~EKk~~~elleq~-qaMEknL~~mar  214 (312)
                      +|..|-.-|.+...=...||.+-.-|..|+             .+++..++.+..+.+...+.|..+ +.|..|+..+..
T Consensus       296 KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~  375 (388)
T PF04912_consen  296 KIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEK  375 (388)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444433345556555555555             666677777777888888888888 778888888888


Q ss_pred             HHHHHHHHHHH
Q 021465          215 EMEKLHAEVVN  225 (312)
Q Consensus       215 EvekLrAEIan  225 (312)
                      .+++|..-|+.
T Consensus       376 n~~~le~Ri~~  386 (388)
T PF04912_consen  376 NVKKLEERIAK  386 (388)
T ss_pred             HHHHHHHHHhc
Confidence            88888877764

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.34  E-value=6  Score=33.27  Aligned_cols=72  Identities=22%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           68 RLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELT  147 (312)
Q Consensus        68 rLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~  147 (312)
                      +|-++...++-.|++++.+|......+..+..++                     +.|+.-+..+++..-++..--.+|-
T Consensus         6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqk---------------------d~L~~~l~~L~~q~~s~~qr~~eLq   64 (107)
T PF09304_consen    6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQK---------------------DQLRNALQSLQAQNASRNQRIAELQ   64 (107)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666554444444                     3355555555555555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 021465          148 SKIQQASEALHKA  160 (312)
Q Consensus       148 aevq~l~~EL~r~  160 (312)
                      ++|..+.+.|+..
T Consensus        65 aki~ea~~~le~e   77 (107)
T PF09304_consen   65 AKIDEARRNLEDE   77 (107)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF15294 Leu_zip: Leucine zipper

Probab=92.33  E-value=5.5  Score=38.60  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++.++++-+|.+-..++-++...+..++
T Consensus       215 ~~~k~L~e~L~~~KhelL~~QeqL~~ae  242 (278)
T PF15294_consen  215 SQQKALEETLQSCKHELLRVQEQLSLAE  242 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhhcch
Confidence            3555666666666666655555555444

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.19  E-value=3.4  Score=40.32  Aligned_cols=94  Identities=19%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          144 QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       144 qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEI  223 (312)
                      .++..+++.+.+|-..+..   +|..+..|-+.+.+|+..++...+.-+..-.+...+......++..+..+.+.|.+.+
T Consensus        46 ~~~~~el~~le~Ee~~l~~---eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~  122 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQ---ELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY  122 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555553   4455555556666666666665444444444666666888888899999999999998


Q ss_pred             HHHHH---hccCCCCCcccc
Q 021465          224 VNAEM---RGHAPNPYSRTY  240 (312)
Q Consensus       224 anaek---ra~a~~~y~~~~  240 (312)
                      ..+..   +.+--|.|+..|
T Consensus       123 ~~~~~~L~~L~ktNv~n~~F  142 (314)
T PF04111_consen  123 EYASNQLDRLRKTNVYNDTF  142 (314)
T ss_dssp             HHHHHHHHCHHT--TTTTT-
T ss_pred             HHHHHHHHHHHhcCchhcee
Confidence            87763   344456777666

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.19  E-value=7.6  Score=36.60  Aligned_cols=19  Identities=16%  Similarity=0.274  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          207 KNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       207 knL~~marEvekLrAEIan  225 (312)
                      +.+..+....++-..++.+
T Consensus       110 ~el~~ar~~~~~ak~~L~~  128 (246)
T PF00769_consen  110 EELEEAREDEEEAKEELLE  128 (246)
T ss_dssp             HHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.13  E-value=4.3  Score=40.47  Aligned_cols=98  Identities=18%  Similarity=0.290  Sum_probs=61.8

Q ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHH----hhhhhHhhhhhHHHHHHHHHH
Q 021465           57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDK----IAKMEADCKAGERLKKDLQQA  132 (312)
Q Consensus        57 ~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek----~~k~Eaelra~e~lk~EL~q~  132 (312)
                      .-|++|...|..|....    ..+.--|.|.+.|+.+..++.++- .+.|++.-|    ..+||.-++   .++.|-.++
T Consensus        75 ~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL-~~~~~vf~k~k~~~q~LE~li~---~~~EEn~~l  146 (401)
T PF06785_consen   75 TKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQL-FHVREVFMKTKGDIQHLEGLIR---HLREENQCL  146 (401)
T ss_pred             HHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcchHHHHHHHHH---HHHHHHHHH
Confidence            44777777777776654    444455777777777777777665 344544322    234454332   345566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      +..++.+.....|...+.+.|.+||+...+
T Consensus       147 qlqL~~l~~e~~Ekeeesq~LnrELaE~la  176 (401)
T PF06785_consen  147 QLQLDALQQECGEKEEESQTLNRELAEALA  176 (401)
T ss_pred             HHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777755443

>TIGR02977 phageshock_pspA phage shock protein A

Probab=92.10  E-value=8.7  Score=35.29  Aligned_cols=35  Identities=9%  Similarity=0.247  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHK  159 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r  159 (312)
                      ++.+|.+++..+-+..+..+.+-.++......+.+
T Consensus        36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~   70 (219)
T TIGR02977        36 MEDTLVEVRTTSARTIADKKELERRVSRLEAQVAD   70 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PLN02939 transferase, transferring glycosyl groups

Probab=92.10  E-value=11  Score=42.24  Aligned_cols=80  Identities=15%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhchh------hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 021465           77 REDLAAAQQEIPRIKAHIRNIHTES------DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQE-LTSK  149 (312)
Q Consensus        77 ~qeL~aaq~Elq~L~~~~~~~~ae~------e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqe-L~ae  149 (312)
                      -++|..+++|.--|+..|..++++-      |..+..|.....-|++-|+.+|.   .+...+.++-+|.....+ +.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  301 (977)
T PLN02939        225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELES---KFIVAQEDVSKLSPLQYDCWWEK  301 (977)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhccchhHHHHHHH
Confidence            3455555555555555555555443      33344444444444443333322   223344444444444333 4445


Q ss_pred             HHHHHHHHHH
Q 021465          150 IQQASEALHK  159 (312)
Q Consensus       150 vq~l~~EL~r  159 (312)
                      |..|..-|.+
T Consensus       302 ~~~~~~~~~~  311 (977)
T PLN02939        302 VENLQDLLDR  311 (977)
T ss_pred             HHHHHHHHHH
Confidence            5554444433

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=92.10  E-value=7.8  Score=40.08  Aligned_cols=45  Identities=16%  Similarity=0.229  Sum_probs=24.3

Q ss_pred             HHHHHhhhhhHhhh-hhHHH----------HHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 021465          107 VLLDKIAKMEADCK-AGERL----------KKDLQQAHIEAQS--LARARQELTSKIQ  151 (312)
Q Consensus       107 ~L~ek~~k~Eaelr-a~e~l----------k~EL~q~r~e~q~--L~~~rqeL~aevq  151 (312)
                      ....|..+.|.+.| .+|.+          |+|+.+.+..++.  |....++|+.-.+
T Consensus       235 ~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~  292 (554)
T KOG4677|consen  235 IFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHY  292 (554)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34456666666655 22322          4555555555555  6666666655443

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=92.09  E-value=1.9  Score=34.95  Aligned_cols=73  Identities=23%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465          106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR  185 (312)
Q Consensus       106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~R  185 (312)
                      ..+..|. ....++..+-.+-.+..++..+++.|.+.++.++.++..++..       ......++++...++.++..+.
T Consensus        16 ~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~-------~~~~~~l~~e~~~lk~~i~~le   87 (108)
T PF02403_consen   16 ENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA-------GEDAEELKAEVKELKEEIKELE   87 (108)
T ss_dssp             HHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT-------TCCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHHH
Confidence            3333343 4444555555555555666666666666666666555554432       1244555555555555555444


Q ss_pred             H
Q 021465          186 A  186 (312)
Q Consensus       186 a  186 (312)
                      .
T Consensus        88 ~   88 (108)
T PF02403_consen   88 E   88 (108)
T ss_dssp             H
T ss_pred             H
Confidence            4

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=92.09  E-value=2.6  Score=34.30  Aligned_cols=24  Identities=13%  Similarity=0.371  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIana  226 (312)
                      +.+++++..+..++.+++.+|..+
T Consensus        80 ~~l~~~~~~l~~~~~elk~~l~~~  103 (105)
T cd00632          80 KRLERQEEDLQEKLKELQEKIQQA  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555543

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.06  E-value=6.3  Score=39.24  Aligned_cols=17  Identities=0%  Similarity=0.245  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021465          201 QLQAMEKNLVGMAREME  217 (312)
Q Consensus       201 q~qaMEknL~~marEve  217 (312)
                      +++..+.++......++
T Consensus       235 ~l~~~~~~l~~~~~~l~  251 (421)
T TIGR03794       235 RIKEARYEIEELENKLN  251 (421)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            34555555555555553

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.02  E-value=10  Score=35.19  Aligned_cols=17  Identities=24%  Similarity=0.427  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021465          145 ELTSKIQQASEALHKAR  161 (312)
Q Consensus       145 eL~aevq~l~~EL~r~k  161 (312)
                      +...++..+..+|.++.
T Consensus       117 E~~rkl~~~E~~Le~aE  133 (237)
T PF00261_consen  117 EVERKLKVLEQELERAE  133 (237)
T ss_dssp             HCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=91.91  E-value=13  Score=36.09  Aligned_cols=144  Identities=17%  Similarity=0.233  Sum_probs=84.4

Q ss_pred             HHHHHHHhHHHHHHhhhhhchh---hHHHHHH-HHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH------------HH
Q 021465           80 LAAAQQEIPRIKAHIRNIHTES---DSHIRVL-LDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR------------AR  143 (312)
Q Consensus        80 L~aaq~Elq~L~~~~~~~~ae~---e~qiR~L-~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~------------~r  143 (312)
                      |+.-.+|++-+...|+.+++-.   -+|.|.+ +|=.-.++     -..||.+|++-+..+..+..            --
T Consensus       138 lA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~-----F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tG  212 (330)
T KOG2991|consen  138 LATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLF-----FLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTG  212 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHH-----HHHHHHHHHHHHHHHHHHHhhhheeeecCCCcch
Confidence            4444566666666666655543   2333322 22222221     24567777766655554432            23


Q ss_pred             HHHHHHHHHHHHH---HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465          144 QELTSKIQQASEA---LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH  220 (312)
Q Consensus       144 qeL~aevq~l~~E---L~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr  220 (312)
                      +.|+++-..|.+|   |-+.-+ .-.|..|-.||.--+.--+.+|+.++.--+--.++-+.+.-|...++-+..+++.-|
T Consensus       213 K~LMAKCR~L~qENeElG~q~s-~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr  291 (330)
T KOG2991|consen  213 KMLMAKCRTLQQENEELGHQAS-EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETR  291 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh-cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            5566665555443   333222 225667777777666677777777776555556666677778888888888888888


Q ss_pred             HHHHHHHHh
Q 021465          221 AEVVNAEMR  229 (312)
Q Consensus       221 AEIanaekr  229 (312)
                      .+|...++-
T Consensus       292 ~~Iq~l~k~  300 (330)
T KOG2991|consen  292 KEIQRLKKG  300 (330)
T ss_pred             HHHHHHHHH
Confidence            888776643

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=91.75  E-value=5.2  Score=34.02  Aligned_cols=26  Identities=12%  Similarity=0.203  Sum_probs=15.1

Q ss_pred             HHHhhhhhHhhhhhHHHHHHHHHHHH
Q 021465          109 LDKIAKMEADCKAGERLKKDLQQAHI  134 (312)
Q Consensus       109 ~ek~~k~Eaelra~e~lk~EL~q~r~  134 (312)
                      +.-..|||..|.++.-++.||..+..
T Consensus        25 ~~~rqkle~qL~Enk~V~~Eldlle~   50 (120)
T KOG3478|consen   25 VESRQKLETQLQENKIVLEELDLLEE   50 (120)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhcc
Confidence            34445666666666666666665543

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.67  E-value=3.5  Score=36.15  Aligned_cols=62  Identities=19%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          131 QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKG  193 (312)
Q Consensus       131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk  193 (312)
                      .+..++..|...-.+|-.++..++.+|....+.. -.+.++..|..|++|+..+.+.++.-+.
T Consensus        76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344444444444444445555555544322 3355667777777777777776665443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=91.65  E-value=5.8  Score=36.81  Aligned_cols=19  Identities=37%  Similarity=0.564  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          207 KNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       207 knL~~marEvekLrAEIan  225 (312)
                      ..+.++.++++.|++||..
T Consensus       131 ~~~~~l~~e~erL~aeL~~  149 (202)
T PF06818_consen  131 DELGSLRREVERLRAELQR  149 (202)
T ss_pred             ccchhHHHHHHHHHHHHHH
Confidence            3467777888888888874

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>TIGR02977 phageshock_pspA phage shock protein A

Probab=91.64  E-value=11  Score=34.67  Aligned_cols=41  Identities=7%  Similarity=0.198  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhh
Q 021465           76 MREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKME  116 (312)
Q Consensus        76 L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~E  116 (312)
                      |+|-+.-..++|...+..+..+.+.+   +.++.++..++.+.+
T Consensus        29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~   72 (219)
T TIGR02977        29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQ   72 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433   334444444444444

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=91.62  E-value=11  Score=34.76  Aligned_cols=67  Identities=19%  Similarity=0.316  Sum_probs=48.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhh-hHHHHHHHHHHHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA-GERLKKDLQQAHIEA  136 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra-~e~lk~EL~q~r~e~  136 (312)
                      |-.....-+.+++.++++|+.|.. +..++...|.+|..|.+...+++++..+ ...++....+.++.+
T Consensus        52 Lq~qLlq~~k~~~~l~~eLq~l~~-~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~L  119 (206)
T PF14988_consen   52 LQDQLLQKEKEQAKLQQELQALKE-FRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARL  119 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566788889999999987 6889999999999999999999888643 233444444444443

>PRK10698 phage shock protein PspA; Provisional

Probab=91.60  E-value=11  Score=34.88  Aligned_cols=10  Identities=10%  Similarity=-0.014  Sum_probs=3.6

Q ss_pred             HHHHHHHhhh
Q 021465          105 IRVLLDKIAK  114 (312)
Q Consensus       105 iR~L~ek~~k  114 (312)
                      +..+...+.+
T Consensus        61 ~~~~~~~~~~   70 (222)
T PRK10698         61 IEQAEAQQVE   70 (222)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=91.46  E-value=25  Score=38.61  Aligned_cols=86  Identities=28%  Similarity=0.361  Sum_probs=40.7

Q ss_pred             hhhhhchhhHHHHHHHHHhhh-hh---Hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 021465           94 IRNIHTESDSHIRVLLDKIAK-ME---ADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLP  168 (312)
Q Consensus        94 ~~~~~ae~e~qiR~L~ek~~k-~E---ael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~  168 (312)
                      ++.++-|+|..|.+.+-|..+ .|   .+| .-+..+.+.|..+.+|.-.|...-++-..-+..+++...++.+   ++.
T Consensus        61 lr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~---~~~  137 (769)
T PF05911_consen   61 LRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEA---EIE  137 (769)
T ss_pred             HHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---HHH
Confidence            445677888888777655421 11   111 1122344466666666665555433333333344444333333   334


Q ss_pred             hHHHHHHHHHHHHH
Q 021465          169 DLHAELDSLRQEHR  182 (312)
Q Consensus       169 alraELe~LrqElq  182 (312)
                      .+..-|+.+.+|.-
T Consensus       138 ~l~~~l~~~eken~  151 (769)
T PF05911_consen  138 DLMARLESTEKENS  151 (769)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444433

The function of this family is unknown.

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=91.45  E-value=13  Score=35.33  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHH
Q 021465          172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEK  207 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEk  207 (312)
                      .+++.+....+...+..+.........++...+|.+
T Consensus       218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~  253 (301)
T PF14362_consen  218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE  253 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence            334444444455555555555666777777766654

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.41  E-value=12  Score=39.89  Aligned_cols=134  Identities=19%  Similarity=0.295  Sum_probs=78.0

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           70 AASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSK  149 (312)
Q Consensus        70 a~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~ae  149 (312)
                      -..+-.+|++|...|.|+.+|...+.+++-           -..-.|.+-   -.||+||...+-.-++|.+.=.+|-.+
T Consensus       113 eneLKq~r~el~~~q~E~erl~~~~sd~~e-----------~~~~~E~qR---~rlr~elKe~KfRE~RllseYSELEEE  178 (772)
T KOG0999|consen  113 ENELKQLRQELTNVQEENERLEKVHSDLKE-----------SNAAVEDQR---RRLRDELKEYKFREARLLSEYSELEEE  178 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------cchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344556666777777777766654444332           223333221   246777777776666677777777777


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHH--hHHHH--HHHHHHHHHHHHHHH---HHHHH
Q 021465          150 IQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNID--NVEQL--QAMEKNLVGMAREME---KLHAE  222 (312)
Q Consensus       150 vq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~e--lleq~--qaMEknL~~marEve---kLrAE  222 (312)
                      --.|.+.+.-++.       -+-|.++++.|+.|+-..+|+-+..-.+  .+..+  +.||.-|..+..|-+   .|+.|
T Consensus       179 NIsLQKqVs~LR~-------sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkE  251 (772)
T KOG0999|consen  179 NISLQKQVSNLRQ-------SQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKE  251 (772)
T ss_pred             cchHHHHHHHHhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            6666666666554       3367788888888888877775543322  22222  455555555555443   34555


Q ss_pred             HH
Q 021465          223 VV  224 (312)
Q Consensus       223 Ia  224 (312)
                      +.
T Consensus       252 L~  253 (772)
T KOG0999|consen  252 LS  253 (772)
T ss_pred             HH
Confidence            54

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.40  E-value=24  Score=38.30  Aligned_cols=138  Identities=23%  Similarity=0.287  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhh-hhhHHHHH
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADC-KAGERLKK  127 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eael-ra~e~lk~  127 (312)
                      -+-|.-|-.||+||-.+=+-|..+-..-+-.|.+.-.||.+|...-..-++|.    -+|-...++.|.-- +.-|..+.
T Consensus        65 aelis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEa----e~Lraala~ae~~R~~lEE~~q~  140 (739)
T PF07111_consen   65 AELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEA----EELRAALAGAEVVRKNLEEGSQR  140 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHhhHHHHHHhhHHHHHH
Confidence            35577788999999998888877754444567777778888865544444443    22333233333211 11245555


Q ss_pred             HHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHH----HHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465          128 DLQQAH----IEAQSLARA----RQELTSKIQQASEALHKA----RLEVKNLPDLHAELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       128 EL~q~r----~e~q~L~~~----rqeL~aevq~l~~EL~r~----kad~qql~alraELe~LrqElq~~RaaiE~  190 (312)
                      ||++++    .++..|...    -..|..+++.|.+.|.-.    -.+.++|.....|.|.|++++-..+..++.
T Consensus       141 ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~  215 (739)
T PF07111_consen  141 ELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA  215 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            665553    222222222    223444444444433211    123456666666777777666666665554

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.39  E-value=19  Score=40.86  Aligned_cols=160  Identities=16%  Similarity=0.176  Sum_probs=85.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh--hHHHH-------HHHHHhhhhhHh---------hhhhHHHHHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTES--DSHIR-------VLLDKIAKMEAD---------CKAGERLKKDLQ  130 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~--e~qiR-------~L~ek~~k~Eae---------lra~e~lk~EL~  130 (312)
                      |......|+.++..|..+.+..-.-...|.+|+  ..+-+       -|-++-.+.-.+         =+.++.+..+|.
T Consensus       158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els  237 (1141)
T KOG0018|consen  158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELS  237 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence            455566777777777777776666666666665  11111       111111111100         022333444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH-----------------HHHHHHHHHHHHHHHHHHHHHh
Q 021465          131 QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLH-----------------AELDSLRQEHRRLRATFEYEKG  193 (312)
Q Consensus       131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alr-----------------aELe~LrqElq~~RaaiE~EKk  193 (312)
                      ...+++.++......-..++...+++..+...+++++...-                 .+...++..+...+..++.-++
T Consensus       238 ~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk  317 (1141)
T KOG0018|consen  238 RLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKK  317 (1141)
T ss_pred             HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHH
Confidence            55555555555444444444444444433333333332222                 2223333555555666666677


Q ss_pred             hcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          194 LNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEM  228 (312)
Q Consensus       194 ~~~elleq~qaMEknL~~marEvekLrAEIanaek  228 (312)
                      .+..+-+.++.+++.+.+...--+....||.+...
T Consensus       318 ~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q  352 (1141)
T KOG0018|consen  318 DYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ  352 (1141)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777888888888888877788888776544

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.30  E-value=16  Score=36.00  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIa  224 (312)
                      ..+-|.++.|+.+=..|++.|.
T Consensus       181 N~L~Kqm~~l~~eKr~Lq~~l~  202 (310)
T PF09755_consen  181 NRLWKQMDKLEAEKRRLQEKLE  202 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444444444444444433

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=91.20  E-value=0.061  Score=58.81  Aligned_cols=136  Identities=18%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             HHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cc
Q 021465           92 AHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVK----NL  167 (312)
Q Consensus        92 ~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~q----ql  167 (312)
                      .....+.+|.+.-.+.|.+.-.++-..-+....|...|..++..++.-...+..|..++..+..|+..++..+-    ..
T Consensus       208 ~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k  287 (859)
T PF01576_consen  208 EQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAK  287 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            33333444444334444444333333334445556666666666666666777777777777777766654221    11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-qaMEknL~~marEvekLrAEIanae  227 (312)
                      ..+...|..+..|+...|+.++.+-..+.+.++.. +.+.+.|..+..+++.+++.+.+++
T Consensus       288 ~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~Le  348 (859)
T PF01576_consen  288 SELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLE  348 (859)
T ss_dssp             -------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23334445556677777777666666655555555 5667777777777777666666665

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=91.19  E-value=15  Score=39.57  Aligned_cols=61  Identities=21%  Similarity=0.219  Sum_probs=36.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++..+++++..++.+...+...++.-++....++.++...+.+|..-. ..+++|.+|-|..
T Consensus       249 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i  309 (670)
T KOG0239|consen  249 ELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEI  309 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            444444555555555555555566666666667777777777777777 3344444444443

>PRK09343 prefoldin subunit beta; Provisional

Probab=91.19  E-value=4.6  Score=34.06  Aligned_cols=35  Identities=9%  Similarity=0.224  Sum_probs=19.2

Q ss_pred             HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465          104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQS  138 (312)
Q Consensus       104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~  138 (312)
                      ++..+......+|+.++.++....||..+..+..-
T Consensus        22 ~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~V   56 (121)
T PRK09343         22 QLERLLQQKSQIDLELREINKALEELEKLPDDTPI   56 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchh
Confidence            34444445555566666666666666665544443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.18  E-value=7  Score=36.76  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      -|.+.+.|...|...|...+.+++.+.+|+....
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE   66 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLE   66 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555544444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=91.16  E-value=7.4  Score=35.53  Aligned_cols=90  Identities=22%  Similarity=0.257  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHH
Q 021465          130 QQAHIEAQSLARARQ---ELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAME  206 (312)
Q Consensus       130 ~q~r~e~q~L~~~rq---eL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaME  206 (312)
                      .-++..+.+|++.+.   .++.+...+.+.+....++.++++....+|+.-=-|+++..+.          .-....++.
T Consensus        89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~----------~~~~ke~~~  158 (190)
T PF05266_consen   89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAK----------LKEKKEAKD  158 (190)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence            344555555555554   5556666666666666554444444444444333333333332          223345566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 021465          207 KNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       207 knL~~marEvekLrAEIanaekr  229 (312)
                      +.+.+|...+++|..++.+++-+
T Consensus       159 ~ei~~lks~~~~l~~~~~~~e~~  181 (190)
T PF05266_consen  159 KEISRLKSEAEALKEEIENAELE  181 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788888888888877744

>PF14992 TMCO5: TMCO5 family

Probab=91.15  E-value=11  Score=36.53  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=17.6

Q ss_pred             HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465           57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRI   90 (312)
Q Consensus        57 ~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L   90 (312)
                      .+.|+|...||-|---+.+-+..+.++..||-.+
T Consensus        11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~   44 (280)
T PF14992_consen   11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKM   44 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666665544444444444444444444

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=91.12  E-value=15  Score=35.41  Aligned_cols=30  Identities=13%  Similarity=0.226  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465          172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQ  201 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE~EKk~~~elleq  201 (312)
                      +-|+..++|+++.+.++..-++-+-.-|++
T Consensus       197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdE  226 (267)
T PF10234_consen  197 AKIEKKKQELERNQKRLQSLQSVRPAFMDE  226 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            334444444444444444444443333333

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.88  E-value=14  Score=34.74  Aligned_cols=22  Identities=18%  Similarity=0.287  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 021465          206 EKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       206 EknL~~marEvekLrAEIanae  227 (312)
                      +..-..+..++...+..+..+.
T Consensus       102 e~Ea~~lq~el~~ar~~~~~ak  123 (246)
T PF00769_consen  102 EEEAEELQEELEEAREDEEEAK  123 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444433333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=90.82  E-value=3.7  Score=38.45  Aligned_cols=55  Identities=18%  Similarity=0.235  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       170 lraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      ++++++.|+.|++.....+|...+....+..|.+...+.++.+..+-++|+.+|.
T Consensus       156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            3355555555555555555555556666666666667777777777777777665

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=90.80  E-value=9.5  Score=38.12  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             HHHHHHHHhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          104 HIRVLLDKIAKMEADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       104 qiR~L~ek~~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      .+-.-.||+.+-|.-| .-.+.+-++..+++.++..+...-++++.-|..++++|++..
T Consensus       249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is  307 (359)
T PF10498_consen  249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS  307 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444556666666555 445556666666666666666666666666666666666655

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=90.65  E-value=20  Score=37.76  Aligned_cols=29  Identities=17%  Similarity=0.296  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      .++|+..|-.+..|+-+|+.-.--+++|.
T Consensus       161 ~EaL~ekLk~~~een~~lr~k~~llk~Et  189 (596)
T KOG4360|consen  161 LEALQEKLKPLEEENTQLRSKAMLLKTET  189 (596)
T ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHhhh
Confidence            45666667777777777766555455444

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=90.56  E-value=6.3  Score=38.40  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=25.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH--------HHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEY--------EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~--------EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      ++-.++++++.+++.+...+..+.-        ....+.++..+.+.-++.+.......++++.+..
T Consensus       243 ~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~  309 (362)
T TIGR01010       243 QVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEAD  309 (362)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555544443221        1112223333334444455555555555554433

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PRK10869 recombination and repair protein; Provisional

Probab=90.54  E-value=10  Score=39.64  Aligned_cols=101  Identities=10%  Similarity=0.025  Sum_probs=49.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021465          120 KAGERLKKDLQQAHIEAQSLAR---ARQELTSKIQQASEALHKARLEV-KNLPDLHAELDSLRQEHRRLRATFEYEKGLN  195 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~---~rqeL~aevq~l~~EL~r~kad~-qql~alraELe~LrqElq~~RaaiE~EKk~~  195 (312)
                      ..++.+..+|+.+..++.....   .|-+=+.+++.-...|.+++--- ..++.+.+-.+.+++|++.+...-+    ..
T Consensus       268 ~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~----~l  343 (553)
T PRK10869        268 DMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQED----DL  343 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHH----HH
Confidence            4445555556655555554333   22333344444444443333211 2455555666666666655444311    22


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          196 IDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       196 ~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      .++-.+.+..++.+...+.++-+.|.+.+
T Consensus       344 ~~Le~e~~~l~~~l~~~A~~LS~~R~~aA  372 (553)
T PRK10869        344 ETLALAVEKHHQQALETAQKLHQSRQRYA  372 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344445566666666666666665544

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=90.49  E-value=17  Score=40.92  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465          147 TSKIQQASEALHKARLEVKNLPDLHAELDSLR  178 (312)
Q Consensus       147 ~aevq~l~~EL~r~kad~qql~alraELe~Lr  178 (312)
                      ...+..+++++.++..+.+.+...+.+|+..+
T Consensus       254 k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~  285 (1072)
T KOG0979|consen  254 KQAKDRAKKELRKLEKEIKPIEDKKEELESEK  285 (1072)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHH
Confidence            33444555555555555555555555555533

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=90.42  E-value=0.08  Score=57.93  Aligned_cols=109  Identities=21%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV  199 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell  199 (312)
                      +.++.|..+|+..+-.-..+...++.|-.++..+...|....   +........+..++..+..++..++.....+.+..
T Consensus       525 r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n---~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~  601 (859)
T PF01576_consen  525 RQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHAN---RANEEAQKQLKKLQAQLKDLQRELEEAQRAREELR  601 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            455556666655555555556666666666666655554433   34455556666777788888888888888888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      ++...+++.+..+..+++.++..+..++..-+
T Consensus       602 ~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk  633 (859)
T PF01576_consen  602 EQLAVSERRLRALQAELEELREALEQAERARK  633 (859)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888774433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK09343 prefoldin subunit beta; Provisional

Probab=90.33  E-value=7.5  Score=32.80  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVVNAEM  228 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIanaek  228 (312)
                      ..++.++++...+...+.+++..|..+-.
T Consensus        85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~  113 (121)
T PRK09343         85 LRSRTLEKQEKKLREKLKELQAKINEMLS  113 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777777777777777777766543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=90.28  E-value=11  Score=35.80  Aligned_cols=18  Identities=28%  Similarity=0.375  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          172 AELDSLRQEHRRLRATFE  189 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE  189 (312)
                      .+++..+.++..+++.++
T Consensus       146 ~~~~~a~~~~~~a~~~l~  163 (334)
T TIGR00998       146 EELDHARKALLSAKAALN  163 (334)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444433

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=90.28  E-value=6.6  Score=34.93  Aligned_cols=100  Identities=16%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHH-hhhhhchhhHHHHHHHHHhhhhhHhhhhhHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAH-IRNIHTESDSHIRVLLDKIAKMEADCKAGERL  125 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~-~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~l  125 (312)
                      +|++|-..-...+..=...+..........++.|..++.|.+.+... ..++.+|.       ..+..++|++|+  ..|
T Consensus        38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~-------~~~~~~~ea~L~--~~~  108 (155)
T PRK06569         38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEF-------LIKKKNLEQDLK--NSI  108 (155)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH--HHH
Confidence            77777766666665555555555666666677777777777777554 45555554       445556666655  445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          126 KKDLQQAHIEAQSLARARQELTSKIQQASEALH  158 (312)
Q Consensus       126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~  158 (312)
                      .++.......+.   ..+.+...++-.+.-++.
T Consensus       109 ~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~  138 (155)
T PRK06569        109 NQNIEDINLAAK---QFRTNKSEAIIKLAVNII  138 (155)
T ss_pred             HHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence            555555544444   345555666666666665

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=90.25  E-value=3.9  Score=37.11  Aligned_cols=18  Identities=11%  Similarity=0.327  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          172 AELDSLRQEHRRLRATFE  189 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE  189 (312)
                      ..|+.+++++..++.++.
T Consensus       135 ~~i~~~~~~~~~~~~~an  152 (188)
T PF03962_consen  135 EKIEKLKEEIKIAKEAAN  152 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455666666666666544

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.21  E-value=16  Score=34.36  Aligned_cols=15  Identities=20%  Similarity=0.350  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          208 NLVGMAREMEKLHAE  222 (312)
Q Consensus       208 nL~~marEvekLrAE  222 (312)
                      .+..+..+|+++|.+
T Consensus        89 ey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   89 EYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444455555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=90.02  E-value=28  Score=36.63  Aligned_cols=123  Identities=17%  Similarity=0.236  Sum_probs=69.8

Q ss_pred             HHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 021465           90 IKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPD  169 (312)
Q Consensus        90 L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~a  169 (312)
                      |..-+..++.|.+--+|...+++...-      +-+.+.+..++-.+.+|-..-.+|..+....+.++.-.=.  .+-.+
T Consensus       381 L~~rL~e~~~e~~~~~r~~lekl~~~q------~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kId--tE~k~  452 (531)
T PF15450_consen  381 LNLRLSEAKNEWESDERKSLEKLDQWQ------NEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKID--TEGKA  452 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhcc--HHHHH
Confidence            333344445555555555555554443      2234444455555555555555666666666666532111  12345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       170 lraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      ..-+|..+|+|+-.+=+.+.+-+..+..  ..+.+|.-+|+  ...|-||.--|.
T Consensus       453 R~~eV~~vRqELa~lLssvQ~~~e~~~~--rkiaeiqg~l~--~~qi~kle~siq  503 (531)
T PF15450_consen  453 REREVGAVRQELATLLSSVQLLKEDNPG--RKIAEIQGKLA--TNQIMKLENSIQ  503 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChh--hhHHHHHHHHH--HHHHHHHHHHHH
Confidence            5578889999999888888887777755  22444555555  556666665555

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=90.01  E-value=12  Score=35.55  Aligned_cols=32  Identities=9%  Similarity=0.091  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAP  233 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIanaekra~a~  233 (312)
                      .++...+.++......++..+..+.+..  -+|+
T Consensus       179 ~~~~~~~~~~~~~~~~l~~a~~~l~~~~--i~AP  210 (327)
T TIGR02971       179 TDVDLAQAEVKSALEAVQQAEALLELTY--VKAP  210 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCE--EECC
Confidence            3445566677777777777777777653  5553

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=89.99  E-value=33  Score=37.39  Aligned_cols=34  Identities=9%  Similarity=0.201  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhHHHHHHhh---hhhchhhHHHHHHH
Q 021465           76 MREDLAAAQQEIPRIKAHIR---NIHTESDSHIRVLL  109 (312)
Q Consensus        76 L~qeL~aaq~Elq~L~~~~~---~~~ae~e~qiR~L~  109 (312)
                      ++.+|..+--||++-++-+.   ..+..+|.++-+|-
T Consensus       375 ~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~  411 (786)
T PF05483_consen  375 NEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELK  411 (786)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH
Confidence            33445555555555444333   34455555554443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=89.99  E-value=39  Score=38.66  Aligned_cols=28  Identities=4%  Similarity=0.055  Sum_probs=12.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHHhhh
Q 021465           69 LAASHITMREDLAAAQQEIPRIKAHIRN   96 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~~~~~   96 (312)
                      .......+++.+..+-.+++.++..+.+
T Consensus        63 ~~~~~~~~~~~i~~ap~~~~~~~~~l~~   90 (1109)
T PRK10929         63 SLERAKQYQQVIDNFPKLSAELRQQLNN   90 (1109)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            3333444444444444444444444443

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=89.70  E-value=14  Score=37.91  Aligned_cols=151  Identities=13%  Similarity=0.217  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhH-----hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           77 REDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA-----DC-KAGERLKKDLQQAHIEAQSLARARQELTSKI  150 (312)
Q Consensus        77 ~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Ea-----el-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aev  150 (312)
                      ..++..+++||..|+......+.+-..-|-.+-+|+.++=.     .. ...--+-..-..+..+.++|+..=.+|-.-|
T Consensus       150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V  229 (424)
T PF03915_consen  150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV  229 (424)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777666666666666666655322     10 0011122222334455556666666666666


Q ss_pred             HHHHHHHHH--HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH-----------HHHHHHHHHHHHHHHHHH
Q 021465          151 QQASEALHK--ARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV-----------EQLQAMEKNLVGMAREME  217 (312)
Q Consensus       151 q~l~~EL~r--~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell-----------eq~qaMEknL~~marEve  217 (312)
                      ..|++|+..  .+-..++|+.+..+|+.+.+++......|..+|-.-....           +.+...+.-+..+....+
T Consensus       230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~  309 (424)
T PF03915_consen  230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLK  309 (424)
T ss_dssp             HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666632  2333467788888888888888888877776554332222           222445556666666677


Q ss_pred             HHHHHHHHHH
Q 021465          218 KLHAEVVNAE  227 (312)
Q Consensus       218 kLrAEIanae  227 (312)
                      ++..-+...+
T Consensus       310 k~~etf~lve  319 (424)
T PF03915_consen  310 KASETFALVE  319 (424)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766666555

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=89.53  E-value=23  Score=35.02  Aligned_cols=87  Identities=16%  Similarity=0.277  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHHHHHhhc-------HHhHHHHHHHHHHH
Q 021465          141 RARQELTSKIQQASEALHKARLEVKNL----PDLHAELDSLRQEHRRLRATFEYEKGLN-------IDNVEQLQAMEKNL  209 (312)
Q Consensus       141 ~~rqeL~aevq~l~~EL~r~kad~qql----~alraELe~LrqElq~~RaaiE~EKk~~-------~elleq~qaMEknL  209 (312)
                      ..|..|+.++..++......+-|++.+    +++..|.|..+...+|+-..+-|-.++.       -.++.+-+-....|
T Consensus       126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl  205 (319)
T PF09789_consen  126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL  205 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence            456667777777777776666666554    4444455666666666666655544442       22333335566666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          210 VGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       210 ~~marEvekLrAEIanae  227 (312)
                      .....|.+=++.-|..+.
T Consensus       206 ~q~qeE~~l~k~~i~KYK  223 (319)
T PF09789_consen  206 KQLQEEKELLKQTINKYK  223 (319)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666666666554

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=89.49  E-value=8.3  Score=31.83  Aligned_cols=75  Identities=20%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN  198 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el  198 (312)
                      .+.-.+..+|..++.+.-.+....++|+.+++.++++......    -+.++.+|+.+++++...|.....-|.-...+
T Consensus        10 ~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l   84 (106)
T PF05837_consen   10 QESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL   84 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777777888888888888888887655442    56788889999999988888777666554433

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=89.42  E-value=4.1  Score=42.15  Aligned_cols=34  Identities=9%  Similarity=0.227  Sum_probs=14.0

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      +..|..|=--..+|.-.|--.+.....+|+.|..
T Consensus        47 ~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~   80 (472)
T TIGR03752        47 LKALGIEGDTPADTLRTLVAEVKELRKRLAKLIS   80 (472)
T ss_pred             hHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            3445444444444443333333333333443333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=89.41  E-value=11  Score=36.44  Aligned_cols=75  Identities=16%  Similarity=0.217  Sum_probs=37.1

Q ss_pred             HhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 021465          111 KIAKMEADCKAGERLKKDLQQAHIEAQSLARA------RQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL  184 (312)
Q Consensus       111 k~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~------rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~  184 (312)
                      +..+|.+.|..++.++=+|.=+|.-+..+...      .+....+.+...+.|...+.   +++.+..++....+++...
T Consensus       150 dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~---ELe~~~EeL~~~Eke~~e~  226 (269)
T PF05278_consen  150 DLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKE---ELEELEEELKQKEKEVKEI  226 (269)
T ss_pred             HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            34455555565665555555555444443333      33344444444444544443   4444455555555555555


Q ss_pred             HHHH
Q 021465          185 RATF  188 (312)
Q Consensus       185 Raai  188 (312)
                      +..|
T Consensus       227 ~~~i  230 (269)
T PF05278_consen  227 KERI  230 (269)
T ss_pred             HHHH
Confidence            5554

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=89.37  E-value=15  Score=32.74  Aligned_cols=114  Identities=25%  Similarity=0.295  Sum_probs=55.5

Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHH
Q 021465           60 ERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSL  139 (312)
Q Consensus        60 ~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L  139 (312)
                      ++..-.+++|-+.+..++++|..+..++-.-........    ..++...+++..   .+....++.      =.+...+
T Consensus        11 ~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~----~~l~~~~~ri~~---m~~gg~~f~------i~~~~~~   77 (158)
T PF09486_consen   11 QRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAAR----QRLRAHDARIDA---MMTGGAPFS------IDEYLAL   77 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHH---HHcCCCCcc------HHHHHHH
Confidence            334444556666666666666666555544433211111    112222222222   222222222      1344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465          140 ARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       140 ~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE  189 (312)
                      ...+..|..++..+..++.+++.   .+.....+|..++..|-+.++.|+
T Consensus        78 ~~~r~~l~~~~~~~e~~~a~l~~---~l~~~~~~ia~~~raIarn~a~id  124 (158)
T PF09486_consen   78 RRYRDVLEERVRAAEAELAALRQ---ALRAAEDEIAATRRAIARNDARID  124 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHH
Confidence            55666666667777777666664   555555566666666655555433

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=89.27  E-value=4.5  Score=33.27  Aligned_cols=39  Identities=13%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021465          104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARA  142 (312)
Q Consensus       104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~  142 (312)
                      ++..+..+...+|.+++.++.+..+|..+..+..-+...
T Consensus        18 ~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~V   56 (110)
T TIGR02338        18 QLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSV   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHh
Confidence            455555566667777777777777777765444444333

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=89.18  E-value=6.9  Score=32.18  Aligned_cols=22  Identities=5%  Similarity=0.332  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIa  224 (312)
                      +..++++..+...+.+++..|.
T Consensus        84 ~~lek~~~~l~~~l~e~q~~l~  105 (110)
T TIGR02338        84 KTLQRQEERLREQLKELQEKIQ  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444555555544444

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.17  E-value=14  Score=38.18  Aligned_cols=10  Identities=40%  Similarity=0.733  Sum_probs=5.6

Q ss_pred             hhhHHHHHHH
Q 021465           46 PLLEDKIAVQ   55 (312)
Q Consensus        46 p~lE~~l~~q   55 (312)
                      |+|-..|..|
T Consensus       324 ~ll~sqleSq  333 (493)
T KOG0804|consen  324 PLLTSQLESQ  333 (493)
T ss_pred             hhhhhhhhHH
Confidence            3555555555

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=89.14  E-value=14  Score=40.62  Aligned_cols=13  Identities=23%  Similarity=0.442  Sum_probs=7.8

Q ss_pred             HHHHHhhhhhhhh
Q 021465           56 AAEIERLARDNHR   68 (312)
Q Consensus        56 ~~Ei~~L~~dNqr   68 (312)
                      .-||+||+.|=..
T Consensus       355 DsE~qRLitEvE~  367 (861)
T PF15254_consen  355 DSEVQRLITEVEA  367 (861)
T ss_pred             hHHHHHHHHHHHH
Confidence            4567777666433

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=89.08  E-value=15  Score=37.95  Aligned_cols=51  Identities=8%  Similarity=0.099  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHhhcHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          179 QEHRRLRATFEYEKGLNIDNVEQL--------QAMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       179 qElq~~RaaiE~EKk~~~elleq~--------qaMEknL~~marEvekLrAEIanaekr  229 (312)
                      +++..++..+|.-||.+...+.-+        +....++.+....+.++.+.+....-|
T Consensus       361 kql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~R  419 (575)
T KOG4403|consen  361 KQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHR  419 (575)
T ss_pred             HHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566667777777666655544332        666777777777777777777655444

>PRK10869 recombination and repair protein; Provisional

Probab=89.08  E-value=32  Score=36.06  Aligned_cols=72  Identities=8%  Similarity=0.024  Sum_probs=33.3

Q ss_pred             hhHHHHH--HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhh-----hhchhhHHHHHHHHHhhhhhHh
Q 021465           47 LLEDKIA--VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRN-----IHTESDSHIRVLLDKIAKMEAD  118 (312)
Q Consensus        47 ~lE~~l~--~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~-----~~ae~e~qiR~L~ek~~k~Eae  118 (312)
                      +|+.-..  ....+.+.+-..=+.+...+..++.+-...++++.-|+-.+..     ++...+.++..-..+....|..
T Consensus       145 lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i  223 (553)
T PRK10869        145 LLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQL  223 (553)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            6664332  3444444444444444444444444444444444444444333     3344455555555555444433

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=89.03  E-value=21  Score=34.45  Aligned_cols=25  Identities=4%  Similarity=0.033  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanae  227 (312)
                      ...+..+.....+++..+..+.++.
T Consensus       186 ~~~~a~~~~~~a~l~~a~~~l~~~~  210 (346)
T PRK10476        186 DALVAQRAAREAALAIAELHLEDTT  210 (346)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcCE
Confidence            3344445555566666666665543

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=88.98  E-value=3.4  Score=37.51  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=19.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ..+.++++.|++++..+++.++.-.+...+.++++
T Consensus       106 ~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~  140 (188)
T PF03962_consen  106 EELLEELEELKKELKELKKELEKYSENDPEKIEKL  140 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34456666666666666666554444444444444

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PRK10698 phage shock protein PspA; Provisional

Probab=88.85  E-value=20  Score=33.32  Aligned_cols=85  Identities=19%  Similarity=0.216  Sum_probs=41.1

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHH-HhhhhhchhhHHHHH-------HHHHhhhhhHhh----hhhHHHHHHHHHHHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIKA-HIRNIHTESDSHIRV-------LLDKIAKMEADC----KAGERLKKDLQQAHIEA  136 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~-~~~~~~ae~e~qiR~-------L~ek~~k~Eael----ra~e~lk~EL~q~r~e~  136 (312)
                      +-++...+++.+..++..+..... ....|++-.|---|+       ..+++..++.++    ..++.|+..+.+++..+
T Consensus        50 ~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki  129 (222)
T PRK10698         50 ALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKL  129 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555666666666655532 223444444444444       444444444443    22334455555555555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021465          137 QSLARARQELTSKIQQA  153 (312)
Q Consensus       137 q~L~~~rqeL~aevq~l  153 (312)
                      +++-+-+..|.+..+..
T Consensus       130 ~eak~k~~~L~aR~~~A  146 (222)
T PRK10698        130 SETRARQQALMLRHQAA  146 (222)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555544443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=88.84  E-value=39  Score=36.77  Aligned_cols=11  Identities=18%  Similarity=0.368  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHH
Q 021465          217 EKLHAEVVNAE  227 (312)
Q Consensus       217 ekLrAEIanae  227 (312)
                      .+|..|+....
T Consensus       604 ~rleEE~e~L~  614 (698)
T KOG0978|consen  604 KRLEEELERLK  614 (698)
T ss_pred             HHHHHHHHHHH
Confidence            33444444433

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.81  E-value=33  Score=35.79  Aligned_cols=71  Identities=25%  Similarity=0.313  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHH
Q 021465          134 IEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL  209 (312)
Q Consensus       134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL  209 (312)
                      .|+.+-.+.+.+=+..+|.++.+|+++-.  --|.-|+.|-+..-||+..++..|..-.|.+   +++.|.+...+
T Consensus       449 lEmdk~LskKeeeverLQ~lkgelEkat~--SALdlLkrEKe~~EqefLslqeEfQk~eken---l~ERqkLKs~l  519 (527)
T PF15066_consen  449 LEMDKTLSKKEEEVERLQQLKGELEKATT--SALDLLKREKETREQEFLSLQEEFQKHEKEN---LEERQKLKSRL  519 (527)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHH
Confidence            55566666666666677777777776653  3566677777777777777777765544443   44444433333

>PRK11546 zraP zinc resistance protein; Provisional

Probab=88.77  E-value=6.4  Score=34.67  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 021465          142 ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL  184 (312)
Q Consensus       142 ~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~  184 (312)
                      .|++|.++-..|+..+.....|-+.|.++..||..|++.+...
T Consensus        66 LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~  108 (143)
T PRK11546         66 LRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL  108 (143)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333344333444444444444433333

>TIGR01069 mutS2 MutS2 family protein

Probab=88.69  E-value=11  Score=41.28  Aligned_cols=8  Identities=13%  Similarity=0.202  Sum_probs=3.5

Q ss_pred             CCCCCCCC
Q 021465          255 GVYVDGYS  262 (312)
Q Consensus       255 ~~y~~~Yg  262 (312)
                      ..|-.+||
T Consensus       630 ~V~v~~~~  637 (771)
T TIGR01069       630 KVRIRYFG  637 (771)
T ss_pred             EEEEccCC
Confidence            33444444

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=88.68  E-value=7.1  Score=34.37  Aligned_cols=46  Identities=15%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             HHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          186 ATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       186 aaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      .++++-+|...++-...+.|+.+|..+.+.+..|+.++.....+..
T Consensus        94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~  139 (145)
T COG1730          94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA  139 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777799999999999999999999988776543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.67  E-value=44  Score=37.13  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=15.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhh
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNI   97 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~   97 (312)
                      +++-.+...|+|.....+.|...|.+.+...
T Consensus       667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~  697 (970)
T KOG0946|consen  667 RELDYQIENLKQMEKELQVENEELEEEVQDF  697 (970)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555554444443

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=88.66  E-value=2.5  Score=44.86  Aligned_cols=66  Identities=20%  Similarity=0.353  Sum_probs=53.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      .|-.+.+.-||-++...-|+|.+.-.++-.++..++++|.+++.   +|.+|+-+|++.+..+.+++++
T Consensus        85 ~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~---eL~~Lk~~ieqaq~~~~El~~~  150 (907)
T KOG2264|consen   85 KRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL---ELSALKGEIEQAQRQLEELRET  150 (907)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH---HHHHHHhHHHHHHHHHHHHHhh
Confidence            34446677788888888888888888888888889999888885   7788888888888888887775

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=88.49  E-value=25  Score=37.75  Aligned_cols=134  Identities=18%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             HHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           82 AAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus        82 aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      ..+.||+++-..|. ++++.|..-..+.|.+..    ....-.++.-|+...+.++.|...+..|..+.+.++..|.+.-
T Consensus       264 ~~~~~i~~~~~~id-~~~D~e~lr~~l~d~s~~----~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~  338 (632)
T PF14817_consen  264 RRKAEIRSETESID-VRADAEYLRNQLEDVSDE----SQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLL  338 (632)
T ss_pred             HHHHHHHHHHhhcc-chhhHHHhhhccCCCCCC----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455665433322 444444444445553332    2344455555566666666666666666666666666654332


Q ss_pred             H-------hc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          162 L-------EV---------KNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       162 a-------d~---------qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      .       +.         .++-.+++.++.|+.+.+.+...+..    +.+.+..++.-.+++.....-+......|.
T Consensus       339 ~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~----r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr  413 (632)
T PF14817_consen  339 EEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAE----RQEALRSLQAKWQRILDFRQLVSEKQEQIR  413 (632)
T ss_pred             HHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2       11         12234556666666666655554443    223334444444444444444444444443

>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=88.47  E-value=15  Score=35.97  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=77.8

Q ss_pred             HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-------------hHHHHHHHHHhhhhhHhhhh
Q 021465           55 QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-------------DSHIRVLLDKIAKMEADCKA  121 (312)
Q Consensus        55 q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-------------e~qiR~L~ek~~k~Eaelra  121 (312)
                      -.+.|..--.+|+.|.+..++|.+.++.++-+..-++.++...+.++             |+|-|-  |+..++    .+
T Consensus        88 Laa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrr--deanfi----c~  161 (389)
T KOG4687|consen   88 LAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRR--DEANFI----CA  161 (389)
T ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhH--HHHHHH----HH
Confidence            34556666778999999999999999999999999999888766554             444432  333333    35


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      .|.||+.-.++-.|++.+.-.+.+|+.+-..++....|+.-
T Consensus       162 ~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnh  202 (389)
T KOG4687|consen  162 HEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNH  202 (389)
T ss_pred             HHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhh
Confidence            67788888888888888888888888888887777776654

>PRK11519 tyrosine kinase; Provisional

Probab=88.47  E-value=10  Score=40.77  Aligned_cols=17  Identities=6%  Similarity=0.196  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKL  219 (312)
Q Consensus       203 qaMEknL~~marEvekL  219 (312)
                      +.-++.+..+....+++
T Consensus       380 ~~~~~lY~~lL~r~~e~  396 (719)
T PRK11519        380 ESGQQVYMQLLNKQQEL  396 (719)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444443

>smart00502 BBC B-Box C-terminal domain

Probab=88.43  E-value=11  Score=29.98  Aligned_cols=19  Identities=21%  Similarity=0.307  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          207 KNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       207 knL~~marEvekLrAEIan  225 (312)
                      .++..+...+.+|+.-+.-
T Consensus        79 ~q~~~l~~~l~~l~~~~~~   97 (127)
T smart00502       79 QQLESLTQKQEKLSHAINF   97 (127)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333334444333333

Coiled coil region C-terminal to (some) B-Box domains

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=88.38  E-value=9.1  Score=39.48  Aligned_cols=19  Identities=37%  Similarity=0.323  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       203 qaMEknL~~marEvekLrA  221 (312)
                      |.-||.|..-....|||+.
T Consensus       357 qnaekql~~Ake~~eklkK  375 (575)
T KOG4403|consen  357 QNAEKQLKEAKEMAEKLKK  375 (575)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            5556666666666666654

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=88.34  E-value=9.2  Score=31.32  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          201 QLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       201 q~qaMEknL~~marEvekLrAEIan  225 (312)
                      ++..+++++..+..++.+|+..|..
T Consensus       102 ~~~~l~~~~~~~~~~~~~l~~~l~~  126 (129)
T cd00890         102 QIEKLEKQLEKLQDQITELQEELQQ  126 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355566666666666666655543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=88.32  E-value=33  Score=39.15  Aligned_cols=160  Identities=18%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----------hHHHHHHHHHhhhh--hHhhhhhHHHHHHHHHH
Q 021465           66 NHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-----------DSHIRVLLDKIAKM--EADCKAGERLKKDLQQA  132 (312)
Q Consensus        66 NqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----------e~qiR~L~ek~~k~--Eaelra~e~lk~EL~q~  132 (312)
                      ++--.++....=-.|..+|+||.-|+.--.++....           |.|++.+-.|....  ..-.+.+.+|..|.=.-
T Consensus      1119 k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKn 1198 (1439)
T PF12252_consen 1119 KLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKN 1198 (1439)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCc
Confidence            333334444444566777777777766444333333           33444433333211  11111222222211112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccchhHHHHHHHHHHHHHH-----H--------HHHHHHHHh
Q 021465          133 HIEAQSLARARQELTSKIQQASEALHKARLEV------KNLPDLHAELDSLRQEHRR-----L--------RATFEYEKG  193 (312)
Q Consensus       133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~------qql~alraELe~LrqElq~-----~--------RaaiE~EKk  193 (312)
                      -.++.+..+.=.+-++++..+++|--|.....      -.|..|+..|+.+.|=+..     .        ..+|+.+++
T Consensus      1199 ltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~ 1278 (1439)
T PF12252_consen 1199 LTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEK 1278 (1439)
T ss_pred             hhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence            24666666666777778888888765544332      2334444444444332211     1        234666777


Q ss_pred             hcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          194 LNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       194 ~~~elleq~qaMEknL~~marEvekLrAEIana  226 (312)
                      .-+.+++.+..+++.|+.-. -.+|++.+|...
T Consensus      1279 eiq~n~~ll~~L~~tlD~S~-~a~Kqk~di~kl 1310 (1439)
T PF12252_consen 1279 EIQQNLQLLDKLEKTLDDSD-TAQKQKEDIVKL 1310 (1439)
T ss_pred             HHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHH
Confidence            77778888888888877643 356666666654

There is little literature describing the family.

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=88.22  E-value=22  Score=33.00  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          171 HAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       171 raELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ..+++.++.-+..++.+++.-+..|...+..+
T Consensus       152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l  183 (239)
T cd07647         152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGCL  183 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888777777777777776666

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=88.19  E-value=2.3  Score=31.86  Aligned_cols=42  Identities=17%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~  190 (312)
                      |..+|+.|...+.++..   .+..++.++...+.|..|+-.+|+.
T Consensus         8 Ls~dVq~L~~kvdqLs~---dv~~lr~~v~~ak~EAaRAN~RlDN   49 (56)
T PF04728_consen    8 LSSDVQTLNSKVDQLSS---DVNALRADVQAAKEEAARANQRLDN   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444443   3344446666777777777776653

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]

Probab=88.14  E-value=33  Score=38.25  Aligned_cols=65  Identities=20%  Similarity=0.180  Sum_probs=42.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHH-------HHhhhhhHhhhh
Q 021465           54 VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLL-------DKIAKMEADCKA  121 (312)
Q Consensus        54 ~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~-------ek~~k~Eaelra  121 (312)
                      ++.+-++.|-.+|+-+..+++.++++|.+.-.|++.|.+.   |..++|-++-++.       +-.+|+|-++-+
T Consensus       992 a~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eae---IiQekE~el~e~efka~d~Sd~r~kie~efAa 1063 (1424)
T KOG4572|consen  992 AFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAE---IIQEKEGELIEDEFKALDESDPRAKIEDEFAA 1063 (1424)
T ss_pred             HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHHHhhhccccCcchhHHHHHHH
Confidence            3444466777788888888888888888888888888664   4455544444332       444555544433

>PRK11546 zraP zinc resistance protein; Provisional

Probab=88.09  E-value=1.4  Score=38.83  Aligned_cols=13  Identities=23%  Similarity=0.521  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHH
Q 021465          174 LDSLRQEHRRLRA  186 (312)
Q Consensus       174 Le~LrqElq~~Ra  186 (312)
                      |.+|.+|+..+|.
T Consensus        91 I~aL~kEI~~Lr~  103 (143)
T PRK11546         91 INAVAKEMENLRQ  103 (143)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=88.08  E-value=6.9  Score=38.14  Aligned_cols=20  Identities=20%  Similarity=0.391  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 021465          174 LDSLRQEHRRLRATFEYEKG  193 (312)
Q Consensus       174 Le~LrqElq~~RaaiE~EKk  193 (312)
                      +..++.++..++..+..|.+
T Consensus       244 v~~l~~~i~~l~~~i~~e~~  263 (362)
T TIGR01010       244 VPSLQARIKSLRKQIDEQRN  263 (362)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555554443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=88.08  E-value=4.3  Score=35.83  Aligned_cols=62  Identities=13%  Similarity=0.414  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE  189 (312)
                      ++...+.++.++...+..|-.++....+.|..++..+..++.|+++|+.|+.+.......++
T Consensus        14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e   75 (155)
T PF06810_consen   14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE   75 (155)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666777788888888888888888887777778888888888877765444433

The function of this family is unknown.; GO: 0005198 structural molecule activity

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=87.87  E-value=42  Score=35.99  Aligned_cols=54  Identities=26%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          169 DLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       169 alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      ..-.+|..|..++++.+++.-.+....   -.|+++.++.+.+...++++|+.++.+
T Consensus       289 ~kd~~i~~L~~di~~~~~S~~~e~e~~---~~qI~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  289 QKDSEIAQLSNDIERLEASLVEEREKH---KAQISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344667777778888887765554443   445566666666666666666666553

>PRK11281 hypothetical protein; Provisional

Probab=87.83  E-value=57  Score=37.42  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=15.2

Q ss_pred             HHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          191 EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       191 EKk~~~elleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      |...|.++.+.+....+++.++.++-.+.+..+.+
T Consensus       283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~  317 (1113)
T PRK11281        283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDR  317 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444443333

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=87.78  E-value=31  Score=36.63  Aligned_cols=54  Identities=17%  Similarity=0.281  Sum_probs=26.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       167 l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      ++.+-+-.+.++.|++.+...-+...    .+-.+++.+..++...++.+-+.|...+
T Consensus       320 ~~~l~~~~~~~~~el~~L~~~~~~~~----~Le~~~~~l~~~~~~~A~~Ls~~R~~~A  373 (557)
T COG0497         320 IEDLLEYLDKIKEELAQLDNSEESLE----ALEKEVKKLKAELLEAAEALSAIRKKAA  373 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555666666665555422111    1222334555555555555555555544

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=87.77  E-value=16  Score=31.08  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHH-hHHHH
Q 021465          127 KDLQQAHIEAQSLARARQELTSKIQQ---ASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNID-NVEQL  202 (312)
Q Consensus       127 ~EL~q~r~e~q~L~~~rqeL~aevq~---l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~e-lleq~  202 (312)
                      ..+++++-++.++...|+.|..+++.   ...||+....|...- .+ -.---++||+..+|+.+..    +.+ .-.++
T Consensus        12 ~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VY-Kl-iGpvLvkqel~EAr~nV~k----RlefI~~Ei   85 (120)
T KOG3478|consen   12 NKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVY-KL-IGPVLVKQELEEARTNVGK----RLEFISKEI   85 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHH-HH-hcchhhHHHHHHHHhhHHH----HHHHHHHHH
Confidence            35666677888888888888877764   445666655544211 00 0012356888888887653    222 22345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAEMRG  230 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanaekra  230 (312)
                      +..|.++-.+.++.+|.|..|.++.+.+
T Consensus        86 kr~e~~i~d~q~e~~k~R~~v~k~Q~~~  113 (120)
T KOG3478|consen   86 KRLENQIRDSQEEFEKQREAVIKLQQAA  113 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999999999988654

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=87.71  E-value=16  Score=35.28  Aligned_cols=40  Identities=23%  Similarity=0.399  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      ..+..++++.+..+.++.+--..|-++++.-+.||+|.+.
T Consensus       172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qK  211 (267)
T PF10234_consen  172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQK  211 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555553

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=87.69  E-value=30  Score=34.04  Aligned_cols=28  Identities=14%  Similarity=0.125  Sum_probs=14.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          196 IDNVEQLQAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       196 ~elleq~qaMEknL~~marEvekLrAEI  223 (312)
                      .-+.+|+...+.++.++.-++-..|.-|
T Consensus       147 e~LsQqLskaesK~nsLe~elh~trdaL  174 (305)
T PF14915_consen  147 EILSQQLSKAESKFNSLEIELHHTRDAL  174 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555554444433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=87.43  E-value=24  Score=36.50  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      |+.+++.+...+.+.++-+....+.+...+.+..
T Consensus       362 e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~  395 (493)
T KOG0804|consen  362 EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQ  395 (493)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444444444443

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=87.29  E-value=7.5  Score=30.25  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=27.7

Q ss_pred             hhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           97 IHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus        97 ~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      .=+|+|.+|..|.+.+.++.          ..-.+...-|.+|.+.-.++-.++..++..++...
T Consensus         6 ~l~EKDe~Ia~L~eEGekLS----------k~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e   60 (74)
T PF12329_consen    6 KLAEKDEQIAQLMEEGEKLS----------KKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE   60 (74)
T ss_pred             HHHhHHHHHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677778877777764443          22233334444444444444444444444444433

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=87.29  E-value=32  Score=34.85  Aligned_cols=23  Identities=35%  Similarity=0.306  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021465          205 MEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       205 MEknL~~marEvekLrAEIanae  227 (312)
                      .||.+.+...|.+.|||++.+.+
T Consensus       243 vek~i~EfdiEre~LRAel~ree  265 (561)
T KOG1103|consen  243 VEKLIEEFDIEREFLRAELEREE  265 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555554433

>COG5293 Predicted ATPase [General function prediction only]

Probab=87.15  E-value=31  Score=36.08  Aligned_cols=74  Identities=24%  Similarity=0.267  Sum_probs=47.6

Q ss_pred             HHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           85 QEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus        85 ~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      +.+.++.++.+.+-.++   --=|-+++.+++++|.++++-+++|-.-+++.=.+...+ ...++++.+..+.-+.+.
T Consensus       320 k~~e~v~~F~r~~~e~R---~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~-g~~e~y~~l~ee~~~~~~  393 (591)
T COG5293         320 KDFEHVIAFNRAITEER---HDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNR-GVFEKYQTLCEEIIALRG  393 (591)
T ss_pred             HhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhh
Confidence            34444444444444433   233568889999999888888888888887766655544 345667777666665555

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=87.08  E-value=6.6  Score=34.44  Aligned_cols=65  Identities=17%  Similarity=0.335  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      ...|..++.+++.++..|...-..|.+++..+...+.-.... .++..++.+++.|...++.+|..
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~-~~i~~l~~e~~~l~~kL~~l~~~  138 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELR-EEIEELEEEIEELEEKLEKLRSG  138 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            455666777777777777777777888888888777322221 27788888888888888888875

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PLN02939 transferase, transferring glycosyl groups

Probab=87.07  E-value=55  Score=37.04  Aligned_cols=100  Identities=18%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHH-----
Q 021465           58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDL-----  129 (312)
Q Consensus        58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL-----  129 (312)
                      |+..|-.+|-.|..+...|+.+|....+-=    ..+..+.-|+   +.-+|+|+-|..-.-+++..+.+|+-|.     
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (977)
T PLN02939        227 ELDVLKEENMLLKDDIQFLKAELIEVAETE----ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKV  302 (977)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHH
Confidence            344455566666666666665555433211    1222233333   7778888888777766766666665554     


Q ss_pred             HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          130 QQAHIEAQ----------SLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       130 ~q~r~e~q----------~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      +-++.-+.          -+..+.++|..+|..+..-|+...
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (977)
T PLN02939        303 ENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEAN  344 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            11111111          123455666666666666665443

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=86.93  E-value=11  Score=39.01  Aligned_cols=16  Identities=19%  Similarity=0.306  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKAR  161 (312)
Q Consensus       146 L~aevq~l~~EL~r~k  161 (312)
                      |+++++.++++|+.+.
T Consensus        64 lva~~k~~r~~~~~l~   79 (472)
T TIGR03752        64 LVAEVKELRKRLAKLI   79 (472)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=86.90  E-value=18  Score=30.54  Aligned_cols=67  Identities=16%  Similarity=0.272  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ..+|+..+.....|..++.+|.+-++.|+.+-.-..          .-+..|+.++..++..++.+|-.+.++-..+
T Consensus        22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~----------qr~~eLqaki~ea~~~le~eK~ak~~l~~r~   88 (107)
T PF09304_consen   22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRN----------QRIAELQAKIDEARRNLEDEKQAKLELESRL   88 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666666666666666655555443322          3444555555555555555554443433333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=86.78  E-value=27  Score=32.53  Aligned_cols=60  Identities=27%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465          142 ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ  203 (312)
Q Consensus       142 ~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q  203 (312)
                      ..+.|..++..+...++..+.+  ....-..=+..|.....+++..|+.|+..+...+..+.
T Consensus       122 ~~~~l~~~l~~l~~~~~~Er~~--R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~  181 (247)
T PF06705_consen  122 LNQELVRELNELQEAFENERNE--REEREENILKRLEEEENRLQEKIEKEKNTRESKLSELR  181 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555554431  11112223356667777888888888888777777773

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=86.77  E-value=15  Score=29.69  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=26.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREME  217 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEve  217 (312)
                      +.=+.....+.|..|+..++.-+    ..+.+.+++++.+|+++++.-.+.+
T Consensus        46 kyfa~mr~~d~l~~e~k~L~~~~----~Ks~~~i~~L~~~E~~~~~~l~~~E   93 (96)
T PF08647_consen   46 KYFAAMRSKDALDNEMKKLNTQL----SKSSELIEQLKETEKEFVRKLKNLE   93 (96)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            33344444555555555555532    3345566777777777766655544

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=86.67  E-value=40  Score=35.67  Aligned_cols=100  Identities=18%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhchh--------hHHHHHHHHHhhhhhHhhhh--hHHHHHHHHHHHHHHHHH---
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNIHTES--------DSHIRVLLDKIAKMEADCKA--GERLKKDLQQAHIEAQSL---  139 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae~--------e~qiR~L~ek~~k~Eaelra--~e~lk~EL~q~r~e~q~L---  139 (312)
                      ...++++|-.   +|+.|..-.+++..+.        |.++-.|.++..++...+..  .+....++...+-+++.|   
T Consensus       220 ~~e~~~~lP~---ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~  296 (570)
T COG4477         220 LAELQTELPG---QLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDL  296 (570)
T ss_pred             HHHHHhhchH---HHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3344444443   3455555555555444        66777777777776665543  234445555555444443   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465          140 ----ARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR  178 (312)
Q Consensus       140 ----~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr  178 (312)
                          ..+++........++..|.+.+.   ....|+.|++.++
T Consensus       297 lE~EveA~~~V~~~~~~l~~~l~k~ke---~n~~L~~Eie~V~  336 (570)
T COG4477         297 LEREVEAKNVVEENLPILPDYLEKAKE---NNEHLKEEIERVK  336 (570)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHH---HHHHHHHHHHHHH
Confidence                34455555555566666666665   3455555555554

>KOG4657 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.65  E-value=23  Score=33.69  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=17.2

Q ss_pred             HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 021465          106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR  141 (312)
Q Consensus       106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~  141 (312)
                      +.+.+-..++--...+.+.|++.|.+...++++...
T Consensus        44 nS~~efar~lS~~~~e~e~l~~~l~etene~~~~ne   79 (246)
T KOG4657|consen   44 NSLVEFARALSQSQVELENLKADLRETENELVKVNE   79 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334433444445555555555555555443

>TIGR02231 conserved hypothetical protein

Probab=86.57  E-value=6  Score=40.71  Aligned_cols=28  Identities=11%  Similarity=0.242  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      .+....++.+..+.+++++|+.+|....
T Consensus       145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l~  172 (525)
T TIGR02231       145 TEDREAERRIRELEKQLSELQNELNALL  172 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445556666666666677777666554

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=86.51  E-value=25  Score=33.63  Aligned_cols=26  Identities=12%  Similarity=0.210  Sum_probs=14.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      ..+.......+..+..++.+++.+..
T Consensus        77 ~~~~~~l~~~~a~l~~~~~~l~~~~~  102 (331)
T PRK03598         77 APYENALMQAKANVSVAQAQLDLMLA  102 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33344444555666666666665543

>PF14992 TMCO5: TMCO5 family

Probab=86.47  E-value=12  Score=36.44  Aligned_cols=34  Identities=18%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465           62 LARDNHRLAASHITMREDLAAAQQEIPRIKAHIR   95 (312)
Q Consensus        62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~   95 (312)
                      |..|=|+|......|=+.+..+...+|+|..-|.
T Consensus         9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit   42 (280)
T PF14992_consen    9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREIT   42 (280)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678888888888888888888888765554

>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein

Probab=86.45  E-value=31  Score=32.87  Aligned_cols=30  Identities=17%  Similarity=0.354  Sum_probs=17.9

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhHHHH
Q 021465           62 LARDNHRLAASHITMREDLAAAQQEIPRIK   91 (312)
Q Consensus        62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~   91 (312)
                      |..+..+++..|..|.+.|...-.+|..+.
T Consensus        72 ~~~e~e~~a~~H~~la~~L~~~~~~l~~~~  101 (269)
T cd07673          72 FKTSTEKLANCHLELVRKLQELIKEVQKYG  101 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556667777777777755444554444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=86.39  E-value=31  Score=32.81  Aligned_cols=90  Identities=11%  Similarity=0.209  Sum_probs=50.1

Q ss_pred             hHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021465           87 IPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKN  166 (312)
Q Consensus        87 lq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qq  166 (312)
                      |+.+.+.+....+..+.++..+.+.-         .+.|| |..-.=.=++.+...|..+..++...+..+.+.++|.  
T Consensus       112 L~~~a~~~d~~~~~~~~~~~~l~~~f---------~~~Lk-eyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr--  179 (243)
T cd07666         112 LKGMASCIDRCCKATDKRMKGLSEQL---------LPVIH-EYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR--  179 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--
Confidence            44555555555555555555555521         13344 2222333344556666677777778888887777643  


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH
Q 021465          167 LPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       167 l~alraELe~LrqElq~~RaaiE  189 (312)
                       ..+.+|++.+....+.+-..+.
T Consensus       180 -~~~~~ev~~~e~kve~a~~~~k  201 (243)
T cd07666         180 -DLLKEEIEKLEDKVECANNALK  201 (243)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH
Confidence             4556666666665555544433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=86.18  E-value=55  Score=38.02  Aligned_cols=28  Identities=7%  Similarity=0.093  Sum_probs=14.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           65 DNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        65 dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      +++.+....--++.+|.-...||+.+..
T Consensus       734 ~~~l~~~~i~e~~~~l~~~~~el~~~~~  761 (1294)
T KOG0962|consen  734 IIKLIDKEIPELEKELQEVYEELGDLSE  761 (1294)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHhhhh
Confidence            4444444555555555555555555544

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=86.15  E-value=33  Score=33.67  Aligned_cols=62  Identities=21%  Similarity=0.334  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQAS-----EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~-----~EL~r~kad~qql~alraELe~LrqElq~~RaaiE  189 (312)
                      +-+..+|+|.++..|...-.++.++++.|.     ..+.+.+.   .|++.+..|+.+++++..++..|+
T Consensus        39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~---si~~q~~~i~~l~~~i~~l~~~i~  105 (301)
T PF06120_consen   39 FYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEE---SIAAQKRAIEDLQKKIDSLKDQIK  105 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777777777766543     33445543   667777777777777777776663

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=86.04  E-value=17  Score=34.30  Aligned_cols=26  Identities=8%  Similarity=0.199  Sum_probs=13.6

Q ss_pred             HHHHhhhhhHhhhhhHHHHHHHHHHH
Q 021465          108 LLDKIAKMEADCKAGERLKKDLQQAH  133 (312)
Q Consensus       108 L~ek~~k~Eaelra~e~lk~EL~q~r  133 (312)
                      |.+|-.+++.++...+..+.+.++.+
T Consensus        34 l~eR~~~I~~~l~~Ae~~~~eA~~~~   59 (250)
T PRK14474         34 MKKRQQRIANRWQDAEQRQQEAGQEA   59 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555444

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=85.99  E-value=15  Score=28.78  Aligned_cols=26  Identities=27%  Similarity=0.486  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           76 MREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        76 L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      .++.|+.++.++......+..+....
T Consensus         3 a~~~l~~~~~~~~~~~~~l~~L~~~~   28 (123)
T PF02050_consen    3 AEQELAEAQQELQEAEEQLEQLQQER   28 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666665555444444333

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=85.76  E-value=64  Score=37.52  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHH----------HHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLL----------DKIAKMEADCKAGERLKKDLQQAHIEAQSLARAR  143 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~----------ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~r  143 (312)
                      ..++.+....++++..++..+-.++-+...+.|.+-          +...+++.-|...+.+..++..+..++..+.+-.
T Consensus       822 ~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~  901 (1294)
T KOG0962|consen  822 DELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKV  901 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555554444333322          2223334445555566666777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          144 QELTSKIQQASEALHKARL  162 (312)
Q Consensus       144 qeL~aevq~l~~EL~r~ka  162 (312)
                      +++.+.++-+..+|....+
T Consensus       902 ~e~~~~~~~~~~~l~e~~s  920 (1294)
T KOG0962|consen  902 KELLERIQPLKVELEEAQS  920 (1294)
T ss_pred             HhhHhhhcchhhhHHHHHH
Confidence            7777777777777766555

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=85.73  E-value=25  Score=31.13  Aligned_cols=86  Identities=13%  Similarity=0.173  Sum_probs=37.9

Q ss_pred             HHHhhhhhHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          109 LDKIAKMEADCKAGERLKKDLQQAHIEA-QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       109 ~ek~~k~Eaelra~e~lk~EL~q~r~e~-q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      .+|..++..++...+..+.+.+....+. ++|...+++-..-+...+.+-.+.+.  ..+...+.+.+   +-+..++..
T Consensus        48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~--~~~~~A~~ea~---~~~~~A~~~  122 (173)
T PRK13453         48 DKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQE--QIIHEANVRAN---GMIETAQSE  122 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHH
Confidence            3444445555555555555555554443 23333444433334444444433333  12222223332   334445566


Q ss_pred             HHHHHhhcHHhH
Q 021465          188 FEYEKGLNIDNV  199 (312)
Q Consensus       188 iE~EKk~~~ell  199 (312)
                      |+.|++.....+
T Consensus       123 I~~ek~~a~~~l  134 (173)
T PRK13453        123 INSQKERAIADI  134 (173)
T ss_pred             HHHHHHHHHHHH
Confidence            666655544443

>TIGR00414 serS seryl-tRNA synthetase

Probab=85.35  E-value=5.9  Score=40.06  Aligned_cols=28  Identities=18%  Similarity=0.394  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          198 NVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       198 lleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      +.++++.+.+.+..+..++..++.++..
T Consensus        74 l~~~~~~l~~~~~~~~~~~~~~~~~~~~  101 (418)
T TIGR00414        74 IKKELKELKEELTELSAALKALEAELQD  101 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555666666666666654

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>TIGR02231 conserved hypothetical protein

Probab=85.25  E-value=9.3  Score=39.33  Aligned_cols=17  Identities=12%  Similarity=0.413  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 021465           76 MREDLAAAQQEIPRIKA   92 (312)
Q Consensus        76 L~qeL~aaq~Elq~L~~   92 (312)
                      |+++|..++.++.++..
T Consensus        76 l~~~l~~l~~~~~~~~~   92 (525)
T TIGR02231        76 LRKQIRELEAELRDLED   92 (525)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444433

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=85.16  E-value=19  Score=29.26  Aligned_cols=28  Identities=14%  Similarity=0.300  Sum_probs=13.8

Q ss_pred             HHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465          105 IRVLLDKIAKMEADCKAGERLKKDLQQA  132 (312)
Q Consensus       105 iR~L~ek~~k~Eaelra~e~lk~EL~q~  132 (312)
                      +..|..+...+|.+++.++.+..||..+
T Consensus        15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l   42 (105)
T cd00632          15 LQAYIVQRQKVEAQLNENKKALEELEKL   42 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3334444444555555555555555544

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=85.16  E-value=9.8  Score=29.60  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH  220 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr  220 (312)
                      +|..|+.|-+.|.+.-...+..|..-++...++-.++..+.+.+.....+++.|+
T Consensus        13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen   13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666665566665554444444444444444443333333333333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=85.10  E-value=5  Score=34.92  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 021465          143 RQELTSKIQQASEALHKARLEV  164 (312)
Q Consensus       143 rqeL~aevq~l~~EL~r~kad~  164 (312)
                      +.+|..=++.+.+.|+..+...
T Consensus       121 d~el~~l~~ql~~hl~s~~~n~  142 (160)
T PF13094_consen  121 DEELLPLLKQLNKHLESMQNNL  142 (160)
T ss_pred             hHHHHHHHHHHHHHHHHHHccH
Confidence            4455555555555555555443

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=85.06  E-value=8.3  Score=35.60  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465          150 IQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR  185 (312)
Q Consensus       150 vq~l~~EL~r~kad~qql~alraELe~LrqElq~~R  185 (312)
                      +..++.||.-++.   |+..|..-|..-++||+.+|
T Consensus       162 l~~v~~Dl~~ie~---QV~~Le~~L~~k~~eL~~L~  194 (195)
T PF12761_consen  162 LKSVREDLDTIEE---QVDGLESHLSSKKQELQQLR  194 (195)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence            4566666666664   66666666666666666554

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.00  E-value=17  Score=35.58  Aligned_cols=90  Identities=14%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHH
Q 021465          121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVE  200 (312)
Q Consensus       121 a~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elle  200 (312)
                      +...||.+|.++.-.-++-....-.|-.+-..+.-++.-++.   .|+.+...+-.+++|+.              +...
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd---~lee~eE~~~~~~re~~--------------eK~~  140 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKD---KLEELEETLAQLQREYR--------------EKIR  140 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHH
Confidence            445567777777776666555544444444444444433332   22222233333333332              3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          201 QLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       201 q~qaMEknL~~marEvekLrAEIanae  227 (312)
                      .+..+...++.+..++..|+.+|...+
T Consensus       141 elEr~K~~~d~L~~e~~~Lre~L~~rd  167 (302)
T PF09738_consen  141 ELERQKRAHDSLREELDELREQLKQRD  167 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666777777777777776543

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=84.99  E-value=37  Score=34.63  Aligned_cols=42  Identities=33%  Similarity=0.539  Sum_probs=28.8

Q ss_pred             Cch-hhHHHHH----HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 021465           44 PLP-LLEDKIA----VQAAEIERLARDNHRLAASHITMREDLAAAQQ   85 (312)
Q Consensus        44 p~p-~lE~~l~----~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~   85 (312)
                      .+| ++..|.+    .-...|.+...||-+|-.+-..+++.|.+.|+
T Consensus       274 ~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe  320 (442)
T PF06637_consen  274 HLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQE  320 (442)
T ss_pred             hchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            356 6555554    44556888888888888877777777777654

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals

Probab=84.78  E-value=15  Score=36.14  Aligned_cols=40  Identities=15%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      .+|-.|+..|++|+-.|+..||.-..++..++.--.+...
T Consensus       203 vaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE  242 (302)
T PF07139_consen  203 VALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSE  242 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            5677899999999999999999888888887776555544

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=84.73  E-value=52  Score=33.97  Aligned_cols=80  Identities=15%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccc-------cccccCCC
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVN-AEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLL-------QMGVVQTG  274 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIan-aekra~a~~~y~~~~~n~~~~~~~~~~g~~~y~~~Yg~~~~-------~~~~~~~~  274 (312)
                      ++.+..+.=-..+.+||++.+-- +--..|-.+.+|.--+=-=++++..+++-.-.+..+|...-       ..+.--..
T Consensus       249 ~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~  328 (447)
T KOG2751|consen  249 DSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVR  328 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccce
Confidence            44444444444466666665432 11222223455554332233344333333334444443211       23334455


Q ss_pred             CCCCCCCC
Q 021465          275 EGMIPYGS  282 (312)
Q Consensus       275 ~~~~p~~~  282 (312)
                      |-..||+|
T Consensus       329 y~lvp~Gs  336 (447)
T KOG2751|consen  329 YRLVPMGS  336 (447)
T ss_pred             eeeecccc
Confidence            66667765

>smart00806 AIP3 Actin interacting protein 3

Probab=84.68  E-value=51  Score=33.89  Aligned_cols=148  Identities=21%  Similarity=0.362  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHh-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           77 REDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEAD-CKA-GERLKKDLQQAHIEAQSLARARQELTSKIQQAS  154 (312)
Q Consensus        77 ~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eae-lra-~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~  154 (312)
                      .++|.++++||-.|++......++-..-|-.+.+|+.++-.- +.. ..+=|.-++.-+   .+|....+.|+++|..|.
T Consensus       154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k---~kL~~~Sd~lltkVDDLQ  230 (426)
T smart00806      154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSK---KKLSEDSDSLLTKVDDLQ  230 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence            478888888888888888887777777777777777666331 111 112222222222   224444445555555544


Q ss_pred             HHHHHHHHhc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------cHHhHHHHHHHHHHHHHHHH
Q 021465          155 EALHKARLEV---------KNLPDLHAELDSLRQEHRRLRATFEYEKGL-----------NIDNVEQLQAMEKNLVGMAR  214 (312)
Q Consensus       155 ~EL~r~kad~---------qql~alraELe~LrqElq~~RaaiE~EKk~-----------~~elleq~qaMEknL~~mar  214 (312)
                      .-++.++.|+         +||+.+..+|+..++++.....-|..||=.           --+--+.+.-+|.-+..+..
T Consensus       231 D~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~d  310 (426)
T smart00806      231 DIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKE  310 (426)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444443         678899999999999999988887765422           22222233445555566666


Q ss_pred             HHHHHHHHHHHHH
Q 021465          215 EMEKLHAEVVNAE  227 (312)
Q Consensus       215 EvekLrAEIanae  227 (312)
                      .++|+..-....+
T Consensus       311 DL~ka~eTf~lVe  323 (426)
T smart00806      311 DLEKAEETFDLVE  323 (426)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776666655

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=84.68  E-value=18  Score=28.69  Aligned_cols=41  Identities=17%  Similarity=0.326  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      ++.+|+|...+-.++..+...+.++-.++....+|++..+.
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~   46 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQ   46 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888888888888888888887775

; PDB: 3VP9_B 3VP8_B.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=84.56  E-value=31  Score=31.29  Aligned_cols=143  Identities=18%  Similarity=0.222  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhchhhH---HHHHHHHHhh------------hhhHh-hhhhHHHHHHHHHHHHHHHHHHH
Q 021465           78 EDLAAAQQEIPRIKAHIRNIHTESDS---HIRVLLDKIA------------KMEAD-CKAGERLKKDLQQAHIEAQSLAR  141 (312)
Q Consensus        78 qeL~aaq~Elq~L~~~~~~~~ae~e~---qiR~L~ek~~------------k~Eae-lra~e~lk~EL~q~r~e~q~L~~  141 (312)
                      +.|.+.+++-++....+.++++.-..   .+.+|..+..            ..+.+ .-.++.+-.-|++.+....+|..
T Consensus         2 rrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~q   81 (182)
T PF15035_consen    2 RRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQ   81 (182)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHH
Confidence            34556666666666666666655322   2222222221            01111 12333344566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          142 ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       142 ~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrA  221 (312)
                      ....|-.++...+..-..+..   .|..+..+.+.++.|+......+..|...+..-+   ..=...|..+=+++..||.
T Consensus        82 vN~lLReQLEq~~~~N~~L~~---dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~---~~eh~rll~LWr~v~~lRr  155 (182)
T PF15035_consen   82 VNALLREQLEQARKANEALQE---DLQKLTQDWERLRDELEQKEAEWREEEENFNQYL---SSEHSRLLSLWREVVALRR  155 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHHHHHHHH
Confidence            665555555544444444443   2233444455555555555544433333332222   2223445566667777766


Q ss_pred             HHHHH
Q 021465          222 EVVNA  226 (312)
Q Consensus       222 EIana  226 (312)
                      ..+.+
T Consensus       156 ~f~el  160 (182)
T PF15035_consen  156 QFAEL  160 (182)
T ss_pred             HHHHH
Confidence            66544

>PRK12705 hypothetical protein; Provisional

Probab=84.54  E-value=57  Score=34.26  Aligned_cols=8  Identities=25%  Similarity=0.223  Sum_probs=3.0

Q ss_pred             HHHHhHHH
Q 021465           83 AQQEIPRI   90 (312)
Q Consensus        83 aq~Elq~L   90 (312)
                      +++|+..+
T Consensus        57 ~~~~~~~~   64 (508)
T PRK12705         57 AKELLLRE   64 (508)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=84.46  E-value=11  Score=36.72  Aligned_cols=56  Identities=25%  Similarity=0.300  Sum_probs=41.0

Q ss_pred             HHHHHHhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          106 RVLLDKIAKMEADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       106 R~L~ek~~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      |.+....+.=||.| .-+|.-|.||++.|..+.+|.++|=--+.++....++|.+.-
T Consensus       125 ~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly  181 (338)
T KOG3647|consen  125 RAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY  181 (338)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33444444444554 345778889999999999999999999999888888887654

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=84.32  E-value=20  Score=38.59  Aligned_cols=24  Identities=17%  Similarity=0.393  Sum_probs=11.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          198 NVEQLQAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       198 lleq~qaMEknL~~marEvekLrA  221 (312)
                      .+.++-..++.+.++.|+.+-.+.
T Consensus       361 ~~~~~p~~e~~~~~L~R~~~~~~~  384 (726)
T PRK09841        361 RVSAMPSTQQEVLRLSRDVEAGRA  384 (726)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555444443

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=84.29  E-value=11  Score=41.21  Aligned_cols=11  Identities=27%  Similarity=0.172  Sum_probs=5.4

Q ss_pred             CCCCCCCCCCc
Q 021465          253 GGGVYVDGYSQ  263 (312)
Q Consensus       253 g~~~y~~~Yg~  263 (312)
                      |-..|--+||.
T Consensus       640 Gd~V~v~~~~~  650 (782)
T PRK00409        640 GDEVKYLSLGQ  650 (782)
T ss_pred             CCEEEEccCCc
Confidence            34445555554

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=84.20  E-value=20  Score=28.87  Aligned_cols=32  Identities=6%  Similarity=0.221  Sum_probs=21.8

Q ss_pred             hcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          194 LNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       194 ~~~elleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      ...++.++++.+.+.+..+..++..+..++..
T Consensus        68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   68 DAEELKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777777777777777666654

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.16  E-value=6.4  Score=36.24  Aligned_cols=62  Identities=21%  Similarity=0.285  Sum_probs=48.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      .+..|..+|+.++|.+-.++..||..|..+.+--+.-.++++.+.++..+++-||.++++.+
T Consensus        82 ~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~  143 (203)
T KOG3433|consen   82 VLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ  143 (203)
T ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566677888888888888888888888776655556888888888888888888888654

>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised

Probab=84.16  E-value=0.32  Score=50.43  Aligned_cols=79  Identities=23%  Similarity=0.448  Sum_probs=0.0

Q ss_pred             HHHHhhhhhhhhhhhhHHHHH---HHHHHHHHHhHHHHHH-----------hhhhhchhhHHHHHHHHHhhhhhHhhhhh
Q 021465           57 AEIERLARDNHRLAASHITMR---EDLAAAQQEIPRIKAH-----------IRNIHTESDSHIRVLLDKIAKMEADCKAG  122 (312)
Q Consensus        57 ~Ei~~L~~dNqrLa~th~~L~---qeL~aaq~Elq~L~~~-----------~~~~~ae~e~qiR~L~ek~~k~Eaelra~  122 (312)
                      .||..|=   +||..+|-+|+   ++|-...+..++|...           +...+-|||.|||.++++.+-+|.|||  
T Consensus       376 qEI~~Lk---ErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELr--  450 (495)
T PF12004_consen  376 QEIQSLK---ERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELR--  450 (495)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhh--
Confidence            4776665   67777776664   3566666666666332           347788999999999999999985543  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTS  148 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~a  148 (312)
                              ..+.+.+.++..+|.++.
T Consensus       451 --------re~~~m~~~~~~kqrii~  468 (495)
T PF12004_consen  451 --------REHAEMQAVLDHKQRIID  468 (495)
T ss_dssp             --------------------------
T ss_pred             --------hhHHHHhcccccchHHHH
Confidence                    334555555555555543

This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.

>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases

Probab=84.11  E-value=5.3  Score=36.16  Aligned_cols=62  Identities=15%  Similarity=0.293  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 021465           76 MREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLA  140 (312)
Q Consensus        76 L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~  140 (312)
                      .+|||+.+   ..+|.+.....++|-+.+|++|..++.+||.-.+....||.....+..++..|.
T Consensus       103 VqqeL~~t---f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~  164 (171)
T PF04799_consen  103 VQQELSST---FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ  164 (171)
T ss_dssp             -------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666655   456666777777788888888888888888777777777776666666666654

Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=84.05  E-value=37  Score=37.61  Aligned_cols=87  Identities=13%  Similarity=0.165  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhh-hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           75 TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIA-KMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA  153 (312)
Q Consensus        75 ~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~-k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l  153 (312)
                      -+...+...++.|+-+...+.+.+++....--+...... -+..++..++.+++.|.+...+++.+...+-.|....+.+
T Consensus        19 ~~~~~~~~~~~~l~~lq~~~~~~~~~~~~~a~~~~~~~~~~i~qe~~~n~~Lsq~L~~~~~r~n~~~~dd~~l~~l~~ql   98 (835)
T COG3264          19 LLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASDDRQLANLLLQL   98 (835)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhcccccccchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            334445555555555555444444333111111111111 3445566667777777777777766666664554444444


Q ss_pred             HHHHHHHH
Q 021465          154 SEALHKAR  161 (312)
Q Consensus       154 ~~EL~r~k  161 (312)
                      .+-...++
T Consensus        99 ~q~~r~i~  106 (835)
T COG3264          99 LQSSRTIR  106 (835)
T ss_pred             HHHHHHHH
Confidence            44333333

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.96  E-value=76  Score=35.25  Aligned_cols=23  Identities=13%  Similarity=0.420  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021465          202 LQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       202 ~qaMEknL~~marEvekLrAEIa  224 (312)
                      .+-+.|.+++...++.+|+.+|-
T Consensus       778 r~~LqkrIDa~na~Lrrl~~~Ii  800 (1104)
T COG4913         778 RRQLQKRIDAVNARLRRLREEII  800 (1104)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHH
Confidence            35555666666666666666655

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=83.87  E-value=32  Score=31.78  Aligned_cols=16  Identities=25%  Similarity=0.248  Sum_probs=7.7

Q ss_pred             HHHHHHHHHhHHHHHH
Q 021465           78 EDLAAAQQEIPRIKAH   93 (312)
Q Consensus        78 qeL~aaq~Elq~L~~~   93 (312)
                      |...-+.-||++..-.
T Consensus        96 Qt~~LA~~eirR~~Le  111 (192)
T PF11180_consen   96 QTARLADVEIRRAQLE  111 (192)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444566655443

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=83.79  E-value=54  Score=33.40  Aligned_cols=43  Identities=16%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465          172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH  220 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr  220 (312)
                      .||..||+||.-....++|.--+++      +.+..+|.+....|.||+
T Consensus       276 ~Ei~~LKqeLa~~EEK~~Yqs~eRa------Rdi~E~~Es~qtRisklE  318 (395)
T PF10267_consen  276 NEIYNLKQELASMEEKMAYQSYERA------RDIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHH
Confidence            7888888888888777777654444      334444555555555555

Its function is unknown.

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=83.67  E-value=39  Score=31.73  Aligned_cols=91  Identities=13%  Similarity=0.111  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNL---------PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       132 ~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql---------~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      +...+.++......+..++...++.-++...+...+         -..-.|++.++.-+.+++..++.-.+.|..-+..+
T Consensus       105 ~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l  184 (240)
T cd07672         105 IELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVL  184 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555554444444333211110         01124566666677777776666666666666555


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHH
Q 021465          203 ----QAMEKNLVGMAREMEKLHAE  222 (312)
Q Consensus       203 ----qaMEknL~~marEvekLrAE  222 (312)
                          ...++++...-...+.|+.|
T Consensus       185 ~~~~~~w~~~~~~~c~~fq~lEee  208 (240)
T cd07672         185 DKIREDWQKEHVKACEFFEKQECE  208 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                45556666566656555544

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=83.53  E-value=32  Score=30.63  Aligned_cols=32  Identities=13%  Similarity=0.329  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQAS  154 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~  154 (312)
                      +.++.+-..+...+..|.+..+.|..+++.+.
T Consensus        85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~  116 (158)
T PF09744_consen   85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLS  116 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33444444444444444444444444443333

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=83.52  E-value=30  Score=30.25  Aligned_cols=42  Identities=17%  Similarity=0.129  Sum_probs=29.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      .-.++|+ +....=.-++.+...|..+..+++.+.+.|.+.++
T Consensus        90 ~~~e~L~-~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~  131 (218)
T cd07596          90 KLLEPLK-EYLRYCQAVKETLDDRADALLTLQSLKKDLASKKA  131 (218)
T ss_pred             HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555 33343455677788888888888888888888776

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=83.40  E-value=60  Score=33.65  Aligned_cols=15  Identities=33%  Similarity=0.479  Sum_probs=8.5

Q ss_pred             HHHHHhhcHHhHHHH
Q 021465          188 FEYEKGLNIDNVEQL  202 (312)
Q Consensus       188 iE~EKk~~~elleq~  202 (312)
                      |+.+|++..++++.+
T Consensus       365 fq~ekeatqELieel  379 (502)
T KOG0982|consen  365 FQEEKEATQELIEEL  379 (502)
T ss_pred             HHHhhHHHHHHHHHH
Confidence            555555555555555

>PRK11820 hypothetical protein; Provisional

Probab=83.36  E-value=46  Score=32.30  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          204 AMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       204 aMEknL~~marEvekLrAEIanae  227 (312)
                      .+.+--++|..++||+|.+|+|.|
T Consensus       265 ~is~~vVe~K~elEkiREQVQNIE  288 (288)
T PRK11820        265 EITNLVVELKVLIEQMREQVQNIE  288 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            355566788889999999999854

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=83.29  E-value=11  Score=29.74  Aligned_cols=15  Identities=20%  Similarity=0.370  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          147 TSKIQQASEALHKAR  161 (312)
Q Consensus       147 ~aevq~l~~EL~r~k  161 (312)
                      ..+++.++.++....
T Consensus         4 ~~~~~~l~~~l~~~~   18 (106)
T PF01920_consen    4 QNKFQELNQQLQQLE   18 (106)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333433333333

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=83.27  E-value=33  Score=30.65  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=15.1

Q ss_pred             HHHHhhhhhHhhhhhHHHHHHHHHHHHHHH
Q 021465          108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQ  137 (312)
Q Consensus       108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q  137 (312)
                      |.+|..+++.++...+.++.+++++..+.+
T Consensus        60 l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye   89 (181)
T PRK13454         60 LAERQGTITNDLAAAEELKQKAVEAEKAYN   89 (181)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555554443

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=82.94  E-value=14  Score=28.50  Aligned_cols=64  Identities=20%  Similarity=0.241  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHH
Q 021465          128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEK  207 (312)
Q Consensus       128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEk  207 (312)
                      +|.++...+..|....+.|-.+-..|+.++...+          .|-..|....+.+|+.||.       .+..+++||+
T Consensus         1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~----------~ER~~L~ekne~Ar~rvEa-------mI~RLk~leq   63 (65)
T TIGR02449         1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWR----------EERAQLLEKNEQARQKVEA-------MITRLKALEQ   63 (65)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-------HHHhhhhhcc


Q ss_pred             H
Q 021465          208 N  208 (312)
Q Consensus       208 n  208 (312)
                      +
T Consensus        64 ~   64 (65)
T TIGR02449        64 H   64 (65)
T ss_pred             C

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=82.90  E-value=39  Score=31.10  Aligned_cols=117  Identities=11%  Similarity=0.158  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA  153 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l  153 (312)
                      ..|+..+.....|+..+...+..+...-..   .+++...++=      ..+++.......++.++....+.....+...
T Consensus        56 gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~---~v~~~l~~~~------~~~~~~rK~~~~~~~k~~k~~~~~~~~l~Ka  126 (236)
T cd07651          56 GGLKNSLDTLRLETESMAKSHLKFAKQIRQ---DLEEKLAAFA------SSYTQKRKKIQSHMEKLLKKKQDQEKYLEKA  126 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666555443333322211   1222222221      2233444445566677777777777777777


Q ss_pred             HHHHHHHHHhcccchhHH--------HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          154 SEALHKARLEVKNLPDLH--------AELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       154 ~~EL~r~kad~qql~alr--------aELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      ++.......   +++.++        .+++.++..+.+++..+..-++.+...+..+
T Consensus       127 K~~Y~~~c~---~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~  180 (236)
T cd07651         127 REKYEADCS---KINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKAL  180 (236)
T ss_pred             HHHHHHHHH---hHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766664   233333        4566677777777766666666666666666

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>TIGR00255 conserved hypothetical protein TIGR00255

Probab=82.71  E-value=40  Score=32.79  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          204 AMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       204 aMEknL~~marEvekLrAEIanae  227 (312)
                      ...+--+.|..++||+|.+|+|.|
T Consensus       268 ~is~~vVe~K~eiEkiREQVQNIE  291 (291)
T TIGR00255       268 DITNLAVEMKVLIEKIKEQIQNIE  291 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345556778889999999999854

The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=82.69  E-value=37  Score=31.67  Aligned_cols=29  Identities=14%  Similarity=0.198  Sum_probs=14.2

Q ss_pred             HHHHhhhhhHhhhhhHHHHHHHHHHHHHH
Q 021465          108 LLDKIAKMEADCKAGERLKKDLQQAHIEA  136 (312)
Q Consensus       108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~  136 (312)
                      |.+|..+++.++...+..+.+....+.+.
T Consensus        34 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~   62 (246)
T TIGR03321        34 MDAREKKIAGELADADTKKREAEQERREY   62 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555444433

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Probab=82.67  E-value=28  Score=29.39  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-----QAMEKNLVGMAREMEKLHAEVVNAEM  228 (312)
Q Consensus       167 l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-----qaMEknL~~marEvekLrAEIanaek  228 (312)
                      +..+..+++.++.++...+..++.-......++...     ..++..+..+......|...+.+..+
T Consensus       141 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~  207 (213)
T cd00176         141 VEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQK  207 (213)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555544444444333333333332     35667777777777777776665544

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=82.65  E-value=40  Score=31.15  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHH
Q 021465           50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDL  129 (312)
Q Consensus        50 ~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL  129 (312)
                      .||-.-++|-..|+.+.-+|....   ...|+..-.||+.|+....+++.|. .++|+|--   =|+       -=|+.-
T Consensus        23 ~rLR~~E~ek~~~m~~~g~lm~ev---NrrlQ~hl~EIR~LKe~NqkLqedN-qELRdLCC---FLD-------ddRqKg   88 (195)
T PF10226_consen   23 RRLRRAEAEKMSLMVEHGRLMKEV---NRRLQQHLNEIRGLKEVNQKLQEDN-QELRDLCC---FLD-------DDRQKG   88 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHc---ccc-------hhHHHh
Confidence            344555566666666665554432   3456666678888888877777666 23444321   111       112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          130 QQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       130 ~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      ..+--|-|+|...-      +..+++|+..-...+++++.-+   +.|-+|-..+|.-
T Consensus        89 rklarEWQrFGryt------a~vmr~eV~~Y~~KL~eLE~kq---~~L~rEN~eLKEl  137 (195)
T PF10226_consen   89 RKLAREWQRFGRYT------ASVMRQEVAQYQQKLKELEDKQ---EELIRENLELKEL  137 (195)
T ss_pred             HHHhHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHH
Confidence            23444555555544      5566777777665343333333   3344444444433

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=82.56  E-value=0.72  Score=41.44  Aligned_cols=30  Identities=30%  Similarity=0.495  Sum_probs=12.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDL   80 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL   80 (312)
                      +||.+|    .|-++|..++|||.+..--|+|||
T Consensus        18 lLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen   18 LLESEL----DEKENLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHHH----HHHHHHHHCH--------------
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777    677788888888887777777777

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=82.56  E-value=34  Score=31.25  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=12.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE  189 (312)
                      +|..++.+.+.+.+++..++-.|+
T Consensus       160 ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  160 EISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555443

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=82.52  E-value=34  Score=30.20  Aligned_cols=30  Identities=13%  Similarity=0.125  Sum_probs=17.2

Q ss_pred             HHHHhhhhhHhhhhhHHHHHHHHHHHHHHH
Q 021465          108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQ  137 (312)
Q Consensus       108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q  137 (312)
                      |.+|..++..++...+..+.+.++...+.+
T Consensus        51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e   80 (167)
T PRK08475         51 YKSRINKISKRLEEIQEKLKESKEKKEDAL   80 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666666665554444

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=82.42  E-value=24  Score=31.08  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      +.|++.+..|++.+++++.+|..|+..+..+++-.
T Consensus         9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~   43 (145)
T COG1730           9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAI   43 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777777777777777666665544

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=82.32  E-value=14  Score=28.04  Aligned_cols=42  Identities=24%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHH-HHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          176 SLRQEHRRLRAT-FEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       176 ~LrqElq~~Raa-iE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan  225 (312)
                      .+..||...+++ +.++        ..++..++...++.++|+.|+.++..
T Consensus        15 ~~~eEL~kvk~~n~~~e--------~kLqeaE~rn~eL~~ei~~L~~e~ee   57 (61)
T PF08826_consen   15 AIQEELTKVKSANLAFE--------SKLQEAEKRNRELEQEIERLKKEMEE   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555544 3332        33445555555555555555555543

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=82.31  E-value=82  Score=34.46  Aligned_cols=78  Identities=17%  Similarity=0.276  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhh---HHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHH
Q 021465           53 AVQAAEIERLARDNHRLAAS---HITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDL  129 (312)
Q Consensus        53 ~~q~~Ei~~L~~dNqrLa~t---h~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL  129 (312)
                      ..+-.|+...+.+|+.|...   ...+..+|..+.+||-.|..+...=-.+-+.++-........   -...++.||.||
T Consensus       404 e~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~---yskQVeeLKtEL  480 (786)
T PF05483_consen  404 EVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQH---YSKQVEELKTEL  480 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHH
Confidence            45566778888888877654   444556777777777666543222222222222222221111   135566777777


Q ss_pred             HHHH
Q 021465          130 QQAH  133 (312)
Q Consensus       130 ~q~r  133 (312)
                      .+.+
T Consensus       481 E~Ek  484 (786)
T PF05483_consen  481 EQEK  484 (786)
T ss_pred             HHHH
Confidence            7644

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=82.25  E-value=39  Score=30.68  Aligned_cols=46  Identities=17%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHh
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHI   94 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~   94 (312)
                      +...++..-..+...++.+-++=+.+..  ++.+..+++++..++..+
T Consensus        24 ~~~~~~~~A~~~A~~i~~~A~~eAe~~~--ke~~~eakee~~~~r~~~   69 (201)
T PF12072_consen   24 INRKKLEQAEKEAEQILEEAEREAEAIK--KEAELEAKEEAQKLRQEL   69 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            4455566666667777777766555443  556666777777776643

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=82.22  E-value=23  Score=30.22  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH--HHHHHHHHHH
Q 021465          135 EAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL--QAMEKNLVGM  212 (312)
Q Consensus       135 e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~--qaMEknL~~m  212 (312)
                      .++.+...+..|..+...+.+..-..+.   ++..+|.++..+..++..++..+....+........-  .++-..|..-
T Consensus        28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~---~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~  104 (150)
T PF07200_consen   28 QVQELQQEREELLAENEELAEQNLSLEP---ELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAA  104 (150)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHH
Q 021465          213 AREMEKLHAEVVN  225 (312)
Q Consensus       213 arEvekLrAEIan  225 (312)
                      ..+.+.--.+|+.
T Consensus       105 ~~e~eeeSe~lae  117 (150)
T PF07200_consen  105 ASEAEEESEELAE  117 (150)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHH

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=82.15  E-value=46  Score=34.58  Aligned_cols=100  Identities=13%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ  203 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q  203 (312)
                      ....+|++.|..--..   --+-+.-...|+-||+..+.   -.+.++.||+.-++-.+.+..++..-..+++-.++|-.
T Consensus       274 ~~~~~le~er~~wtE~---ES~WIsLteeLR~dle~~r~---~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYa  347 (488)
T PF06548_consen  274 NAEEELEQERQRWTEA---ESKWISLTEELRVDLESSRS---LAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYA  347 (488)
T ss_pred             chhhhHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555433322   22333333445566665554   44666677777777777777777777778888888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          204 AMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       204 aMEknL~~marEvekLrAEIanaekr  229 (312)
                      .++.+.+.+..-=.++...|....+.
T Consensus       348 dLqEk~~~Ll~~Hr~i~egI~dVKka  373 (488)
T PF06548_consen  348 DLQEKHNDLLARHRRIMEGIEDVKKA  373 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777766654

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=82.14  E-value=14  Score=30.79  Aligned_cols=53  Identities=19%  Similarity=0.325  Sum_probs=39.2

Q ss_pred             HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      ++|+++...||..+.   .+-+++.+++..+..|......|.-|-+.|++-|.+..
T Consensus         4 ~~l~~~l~~le~~l~---~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    4 KELFDRLDQLEQQLG---QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678888888886654   34557777788888888877778777777777776654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=82.14  E-value=41  Score=32.20  Aligned_cols=14  Identities=29%  Similarity=0.477  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHH
Q 021465          171 HAELDSLRQEHRRL  184 (312)
Q Consensus       171 raELe~LrqElq~~  184 (312)
                      ..+++.|++||..+
T Consensus       283 ~~~~~~l~~ei~~L  296 (297)
T PF02841_consen  283 QEEAEKLQKEIQDL  296 (297)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            34445555555443

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=82.10  E-value=38  Score=30.47  Aligned_cols=67  Identities=13%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          157 LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       157 L~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEI  223 (312)
                      |...+...-+...++.|.+.|+.|+..++..++.-.+.+.++..+..+++.++.+|-..+++-|.-+
T Consensus        89 Lq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~  155 (161)
T TIGR02894        89 LQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA  155 (161)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444443334556777888888888888888888888888899999999999999999999887654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=81.75  E-value=42  Score=30.73  Aligned_cols=36  Identities=36%  Similarity=0.432  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      +..|.+.+.-++.-...-++...+++.|+.-|.-.+
T Consensus        87 ~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~  122 (188)
T PF05335_consen   87 KASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQ  122 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=81.70  E-value=33  Score=36.78  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=48.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHH
Q 021465           54 VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAH  133 (312)
Q Consensus        54 ~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r  133 (312)
                      ---+|..+|+.+|--|-.+--+|    ...+-+|                        ++|.+..-.+.+-|+.||+.++
T Consensus       298 GMGrEVeNLilENsqLLetKNAL----NiVKNDL------------------------IakVDeL~~E~~vLrgElea~k  349 (832)
T KOG2077|consen  298 GMGREVENLILENSQLLETKNAL----NIVKNDL------------------------IAKVDELTCEKDVLRGELEAVK  349 (832)
T ss_pred             cchHHHHHHHHhhHHHHhhhhHH----HHHHHHH------------------------HHHHHhhccHHHHHhhHHHHHH
Confidence            44578889999997777665433    2222211                        2223322234466777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          134 IEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       134 ~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      +---||...-.+|-.+++.++.++.-++
T Consensus       350 qak~Klee~i~elEEElk~~k~ea~~ar  377 (832)
T KOG2077|consen  350 QAKLKLEEKIRELEEELKKAKAEAEDAR  377 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666677777777777776666665554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.70  E-value=50  Score=34.03  Aligned_cols=8  Identities=25%  Similarity=0.322  Sum_probs=2.9

Q ss_pred             HHhhhhhH
Q 021465          110 DKIAKMEA  117 (312)
Q Consensus       110 ek~~k~Ea  117 (312)
                      .|..+.|.
T Consensus        48 a~~~~~E~   55 (459)
T KOG0288|consen   48 AKLQEKEL   55 (459)
T ss_pred             HHHHHHHH
Confidence            33333333

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=81.53  E-value=38  Score=30.14  Aligned_cols=31  Identities=3%  Similarity=0.162  Sum_probs=18.7

Q ss_pred             HHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465          108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQS  138 (312)
Q Consensus       108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~  138 (312)
                      |.+|..+++.++...+..|.+++.++.+.+.
T Consensus        39 Le~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~   69 (155)
T PRK06569         39 FNNRQTNIQDNITQADTLTIEVEKLNKYYNE   69 (155)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666555543

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=81.15  E-value=7.2  Score=38.20  Aligned_cols=119  Identities=14%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465          119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN  198 (312)
Q Consensus       119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el  198 (312)
                      .+.++++++.|.++..++......-++...+++.+...|...+.   +......+.+.+..++......++.-.+.-..+
T Consensus       213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~---~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L  289 (344)
T PF12777_consen  213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQK---EYEEAQKEKQELEEEIEETERKLERAEKLISGL  289 (344)
T ss_dssp             CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccc
Q 021465          199 VEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTY  240 (312)
Q Consensus       199 leq~qaMEknL~~marEvekLrAEIanaekra~a~~~y~~~~  240 (312)
                      -.+..--..++..+..+...|=.+.-=+..-..=.|+|...|
T Consensus       290 ~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~  331 (344)
T PF12777_consen  290 SGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEY  331 (344)
T ss_dssp             HHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHH
T ss_pred             cchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHH

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=81.10  E-value=17  Score=30.61  Aligned_cols=53  Identities=17%  Similarity=0.238  Sum_probs=42.0

Q ss_pred             HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      ++|+++...||..+.   .+-+++.+++..+..|......|.-|-+.|++-|.+..
T Consensus         4 ~elfd~l~~le~~l~---~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          4 KEIFDALDDLEQNLG---VLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            688999999987664   34558888888888888888888888888888887653

>PF14817 HAUS5: HAUS augmin-like complex subunit 5

Probab=81.10  E-value=86  Score=33.86  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             CchhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           44 PLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        44 p~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      .+|-+..-|..+-++.+.+..+=..|...+.+|.+.|...-+|+.....
T Consensus       298 ~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~  346 (632)
T PF14817_consen  298 ALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLS  346 (632)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3555566666677788888887777777888888888888777776633

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=81.06  E-value=28  Score=36.19  Aligned_cols=21  Identities=10%  Similarity=0.215  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEI  223 (312)
                      +.++..|..+..|+..|++++
T Consensus       100 ~dle~KIkeLEaE~~~Lk~Ql  120 (475)
T PRK13729        100 GDDQRRIEKLGQDNAALAEQV  120 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            444555556666777776666

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.04  E-value=55  Score=31.64  Aligned_cols=16  Identities=19%  Similarity=0.316  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHhHHHHH
Q 021465           77 REDLAAAQQEIPRIKA   92 (312)
Q Consensus        77 ~qeL~aaq~Elq~L~~   92 (312)
                      ..++..+|.||+.|..
T Consensus        44 ~~~~~~~q~ei~~L~~   59 (265)
T COG3883          44 QKEKKNIQNEIESLDN   59 (265)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444444

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=81.00  E-value=23  Score=27.62  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQAS  154 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~  154 (312)
                      ..|+.|+.+++.+...|...+.+|..+.+.++
T Consensus        21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen   21 ALLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33444444444444444433333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.55  E-value=7.8  Score=34.62  Aligned_cols=10  Identities=10%  Similarity=0.238  Sum_probs=4.5

Q ss_pred             hhhchhhHHH
Q 021465           96 NIHTESDSHI  105 (312)
Q Consensus        96 ~~~ae~e~qi  105 (312)
                      ..++++.+.|
T Consensus        97 ~fraQRN~YI  106 (192)
T PF05529_consen   97 KFRAQRNMYI  106 (192)
T ss_pred             HHHHHHhHHH
Confidence            3444444444

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PTZ00121 MAEBL; Provisional

Probab=80.49  E-value=1.4e+02  Score=35.79  Aligned_cols=13  Identities=31%  Similarity=0.251  Sum_probs=6.6

Q ss_pred             HHHHHHHhhhhhh
Q 021465           54 VQAAEIERLARDN   66 (312)
Q Consensus        54 ~q~~Ei~~L~~dN   66 (312)
                      .+..|-.|+..++
T Consensus      1108 t~r~ee~r~~ee~ 1120 (2084)
T PTZ00121       1108 TGKAEEARKAEEA 1120 (2084)
T ss_pred             hhhhHHHHHHHHH
Confidence            3444555555555

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=80.45  E-value=53  Score=31.08  Aligned_cols=23  Identities=13%  Similarity=0.170  Sum_probs=10.1

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIK   91 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~   91 (312)
                      +.......+..|..++.++..+.
T Consensus        78 ~~~~l~~a~a~l~~~~~~~~~~~  100 (334)
T TIGR00998        78 AELALAKAEANLAALVRQTKQLE  100 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444443

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=80.33  E-value=45  Score=30.21  Aligned_cols=59  Identities=12%  Similarity=0.206  Sum_probs=31.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-qaMEknL~~marEvekLrAEIa  224 (312)
                      ++..++.+++.|+.++..++..++.-.+...+..... +.....++-+.+..+.|+.+|.
T Consensus       128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~  187 (189)
T PF10211_consen  128 EIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE  187 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445556666666666666666555444444333322 4444444555555555655554

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.32  E-value=24  Score=27.44  Aligned_cols=13  Identities=23%  Similarity=0.194  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q 021465          129 LQQAHIEAQSLAR  141 (312)
Q Consensus       129 L~q~r~e~q~L~~  141 (312)
                      +.++...+++++.
T Consensus         6 l~~LE~ki~~ave   18 (72)
T PF06005_consen    6 LEQLEEKIQQAVE   18 (72)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.31  E-value=37  Score=34.07  Aligned_cols=10  Identities=30%  Similarity=0.464  Sum_probs=3.5

Q ss_pred             HHHHHHHHHH
Q 021465          137 QSLARARQEL  146 (312)
Q Consensus       137 q~L~~~rqeL  146 (312)
                      ++|...+++|
T Consensus       249 ~kL~~~~etL  258 (365)
T KOG2391|consen  249 QKLVAMKETL  258 (365)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family

Probab=80.30  E-value=64  Score=31.92  Aligned_cols=13  Identities=8%  Similarity=0.399  Sum_probs=5.6

Q ss_pred             HHHHHhhhhhhhh
Q 021465           56 AAEIERLARDNHR   68 (312)
Q Consensus        56 ~~Ei~~L~~dNqr   68 (312)
                      +.....+..+.+.
T Consensus        12 ~~~lk~~~~~~qk   24 (332)
T TIGR01541        12 DRKLKKLNTADEK   24 (332)
T ss_pred             HHHHhhhhHHHHH
Confidence            3334444444443

This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=80.28  E-value=16  Score=27.81  Aligned_cols=41  Identities=27%  Similarity=0.393  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 021465          123 ERLKKDLQQAHIEAQSLA-RARQELTSKIQQASEALHKARLE  163 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~-~~rqeL~aevq~l~~EL~r~kad  163 (312)
                      +.+..-|.|...|++.+- +.|..+..++...+.+|.+++.+
T Consensus        35 ~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~   76 (79)
T PF05008_consen   35 DEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE   76 (79)
T ss_dssp             HHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666667777665 67777777777777777776653

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia

Probab=80.13  E-value=44  Score=29.88  Aligned_cols=59  Identities=17%  Similarity=0.191  Sum_probs=40.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      ++-.+-+++..+++.++.....|..-...-..+-.+++.+.+.++.+.+-.+.-+.+.+
T Consensus        87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~  145 (158)
T PF09486_consen   87 RVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQ  145 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhc
Confidence            33455566677777777777776666666677777777777777777776666655543

>PLN03188 kinesin-12 family protein; Provisional

Probab=80.12  E-value=30  Score=39.95  Aligned_cols=168  Identities=15%  Similarity=0.229  Sum_probs=0.0

Q ss_pred             HHHHHhhhhhhhhh---hhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465           56 AAEIERLARDNHRL---AASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQA  132 (312)
Q Consensus        56 ~~Ei~~L~~dNqrL---a~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~  132 (312)
                      +.|+-.|+.++..|   -..|    =++..+.-||.++.......+.=.                |+-+.|.|-.|++++
T Consensus       939 ~~~~~~~~~~~~~~~~~y~~~----p~~~~~~~e~~~~~~e~~~~~~~~----------------d~~ErEvll~eI~dl  998 (1320)
T PLN03188        939 EEELASLMHEHKLLKEKYENH----PEVLRTKIELKRVQDELEHYRNFY----------------DMGEREVLLEEIQDL  998 (1320)
T ss_pred             hhhhhhhhhhHHHHHHHhhcC----hhhhhhhHHHHHHHHHHHHHHhhc----------------cchhHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHH
Q 021465          133 HIEAQSLARARQ-------------------------------ELTSKIQQASEALHKARLEVKNL---PDLHAELDSLR  178 (312)
Q Consensus       133 r~e~q~L~~~rq-------------------------------eL~aevq~l~~EL~r~kad~qql---~alraELe~Lr  178 (312)
                      |+.+|-+...--                               +...+..-+...+.=.+++.+=|   +.||.|||.-+
T Consensus       999 r~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r 1078 (1320)
T PLN03188        999 RSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASR 1078 (1320)
T ss_pred             HHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHhhcHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCCccccCC
Q 021465          179 QEHRRLRATFEYEKGLNIDNVEQL--------------QAMEKNLVGMAREMEKLHAEVVNAEMR-GHAP-NPYSRTYTN  242 (312)
Q Consensus       179 qElq~~RaaiE~EKk~~~elleq~--------------qaMEknL~~marEvekLrAEIanaekr-a~a~-~~y~~~~~n  242 (312)
                      .=.+++|..++.||+--.|+-+-|              ..++.+.+.+...=-+++.-|...++. ++|| .+-+..|.|
T Consensus      1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188       1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFIN 1158 (1320)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH


Q ss_pred             C
Q 021465          243 P  243 (312)
Q Consensus       243 ~  243 (312)
                      +
T Consensus      1159 a 1159 (1320)
T PLN03188       1159 A 1159 (1320)
T ss_pred             H

>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=80.11  E-value=1.1e+02  Score=34.35  Aligned_cols=55  Identities=18%  Similarity=0.235  Sum_probs=42.0

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhH---------------HHHHHHHHhhhhhHhhh
Q 021465           62 LARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDS---------------HIRVLLDKIAKMEADCK  120 (312)
Q Consensus        62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~---------------qiR~L~ek~~k~Eaelr  120 (312)
                      |+-+|-.+....    |++.++-.|.+.....|.-.++++|+               .||---++.-++++-|.
T Consensus       221 LLPeN~GVrKAF----QDMEsALRENRMTLEAIkvTQsDRDLFKHLItE~tnYVAaDYMRhANeRR~~~~~al~  290 (1480)
T COG3096         221 LLPENSGVRKAF----QDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDQALE  290 (1480)
T ss_pred             hCcccccHHHHH----HHHHHHHHhchhhHHHHHhhhhhHHHHHHHHHhhhhHHHHHHHHhhhhhhccHHHHHH
Confidence            566776666666    89999999999999989888888864               56666677777776654

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=80.09  E-value=11  Score=38.16  Aligned_cols=30  Identities=13%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          198 NVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       198 lleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      +.++++.+.+.+..+..++..++.++...-
T Consensus        71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  100 (425)
T PRK05431         71 LIAEVKELKEEIKALEAELDELEAELEELL  100 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666666666777777777766533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 26/184 (14%), Positives = 72/184 (39%), Gaps = 4/184 (2%)

Query: 48   LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRV 107
            LE+++  + A  ++L  +          M +D+   + +  ++    + +          
Sbjct: 960  LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 108  LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
            L ++  K +   K   + +  + +  +  +   ++RQEL    ++          ++  L
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 168  ----PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV 223
                 +L A+L    +E +   A  E E     + +++++ +E ++  +  ++E   A  
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR 1139

Query: 224  VNAE 227
              AE
Sbjct: 1140 NKAE 1143

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 30/193 (15%), Positives = 73/193 (37%), Gaps = 9/193 (4%)

Query: 40   RLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQ---EIPRIKAHIRN 96
               E L   +++     AE++ L + + +L      ++E L A  +   E   ++  +  
Sbjct: 861  AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAA 920

Query: 97   IHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEA 156
               E +  +  +  +I + E   +  +  KK +QQ   +   L    +E  +  Q+    
Sbjct: 921  KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ---QMLDLEEQLEEEEAARQKLQLE 977

Query: 157  LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREM 216
               A  ++K + D   ++  +  ++ +L    +  +    D    L   E+    + +  
Sbjct: 978  KVTADGKIKKMED---DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 217  EKLHAEVVNAEMR 229
             K  + +   E+R
Sbjct: 1035 NKHESMISELEVR 1047

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-07
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 30/174 (17%)

Query: 43  EPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNI-HTES 101
           E   LL   +  +  ++ R     +    S I      A + ++     A   N  H   
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGL---ATWDNWKHVNC 352

Query: 102 DSHIRVLLDKIAKME-ADCKAGERLKKDL----QQAHIEAQSLARARQELTSK-IQQASE 155
           D    ++   +  +E A+ +   ++   L      AHI    L+    ++    +     
Sbjct: 353 DKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 156 ALHKARLEVKN-------LPDLHAEL----DSLRQEHRRLRATFEYEKGLNIDN 198
            LHK  L  K        +P ++ EL    ++    HR +   +   K  + D+
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 42/265 (15%), Positives = 86/265 (32%), Gaps = 68/265 (25%)

Query: 41  LLEPL------PLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHI 94
           L+ P+      P +  ++ ++  + +RL  DN   A  +++ R       Q   +++  +
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVS-RL------QPYLKLRQAL 144

Query: 95  RNIHTESDSHIRVLLDKIAKMEADC-K---AGERLKKDLQQAHIEAQ----SLARARQEL 146
             +         VL+D    +     K   A +       Q  ++ +    +L       
Sbjct: 145 LEL----RPAKNVLID---GV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP- 195

Query: 147 TSKIQQASEALHKARLEVKNLPDLHA----ELDSLRQEHRRLRATFEYEKGLNI-DNV-- 199
            + ++   + L++      +  D  +     + S++ E RRL  +  YE  L +  NV  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 200 -EQLQAME---KNLVGMAREMEKLHAEVVNAEMRGHAP-NPYSRTYT------------- 241
            +   A     K L+   R   K   + ++A    H   + +S T T             
Sbjct: 256 AKAWNAFNLSCKILL-TTR--FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 242 NPIPSYPPSVQGGGVYVDGYSQPLL 266
                 P  V            P  
Sbjct: 313 CRPQDLPREVLTTN--------PRR 329

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 29/190 (15%), Positives = 72/190 (37%), Gaps = 26/190 (13%)

Query: 49   EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVL 108
              K+ ++A  +ER  + +  L    + ++  +    +E   +   + N+           
Sbjct: 906  LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT----YSTE 961

Query: 109  LDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLP 168
             +K+                L+ +  EA++       L  +I +  + LH+ + E K + 
Sbjct: 962  TEKLRSDVER----------LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 169  DLHAEL--------DSLRQEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAREMEKL 219
            +   +           L++++  L+   E       D  +++ + MEK LV    E ++L
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV---EETKQL 1068

Query: 220  HAEVVNAEMR 229
              ++ +  +R
Sbjct: 1069 ELDLNDERLR 1078

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 26/182 (14%), Positives = 66/182 (36%), Gaps = 3/182 (1%)

Query: 48  LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRV 107
           L+ K+     E+++ +              +    A+ ++  +   I+    E D     
Sbjct: 46  LQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQER 105

Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
           L   + K+E   KA +  ++ ++     AQ      +    ++++A      A  + +  
Sbjct: 106 LATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE-- 163

Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227
            ++  +L  +  +  R     E  +G   +  E+++ +  NL  +  + EK   +    E
Sbjct: 164 -EVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYE 222

Query: 228 MR 229
             
Sbjct: 223 EE 224

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 23/176 (13%), Positives = 62/176 (35%), Gaps = 3/176 (1%)

Query: 48  LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRV 107
              K+       +   R    + +      E +   + ++   K    +   + +   R 
Sbjct: 109 ALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARK 168

Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
           L+   + +E   +  E  +    +   E +++    + L ++ ++ S+   K   E+K L
Sbjct: 169 LVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 228

Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV 223
            D   E ++  +   R     E       D  ++L A +     ++ E++    ++
Sbjct: 229 SDKLKEAETRAEFAERSVTKLEKSID---DLEDELYAQKLKYKAISEELDHALNDM 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.9
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.61
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.58
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.58
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.5
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.31
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	96.99
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.91
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.65
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.43
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.27
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.16
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.83
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.71
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.54
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	95.45
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	95.38
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	95.2
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	95.08
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.78
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	94.77
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	94.67
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	93.86
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	93.81
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.74
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.59
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	93.5
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	93.46
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	93.24
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	93.15
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.0
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.98
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	92.95
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	92.72
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	92.33
3edv_A	323	Spectrin beta chain, brain 1; spectrin repeat, coi	92.25
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	92.2
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	92.15
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	91.95
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	91.73
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	91.7
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.67
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	91.59
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	91.59
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	91.49
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.35
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	91.33
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	91.23
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	90.78
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	90.6
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	89.98
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	89.88
3lay_A	175	Zinc resistance-associated protein; salmonella typ	89.18
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	89.17
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	89.16
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.05
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	88.98
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	88.91
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.8
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	88.7
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	88.63
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	88.43
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	87.94
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	87.92
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	87.91
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	87.68
3lay_A	175	Zinc resistance-associated protein; salmonella typ	87.54
3bas_A	89	Myosin heavy chain, striated muscle/general contro	87.38
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	87.38
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	87.37
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	86.89
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	86.69
2pih_A	151	Protein YMCA; regulate community development, stru	86.67
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.55
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	86.43
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	86.18
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	86.01
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	85.37
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	85.36
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	85.33
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	85.16
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	85.08
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	84.99
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	84.91
3etw_A	119	Adhesin A; antiparallel helix-loop-helix, leucine	84.8
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	84.62
2qyw_A	102	Vesicle transport through interaction with T-SNAR	84.57
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	84.57
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.95
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	83.29
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	82.34
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	81.67
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	80.62
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	80.57
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	80.34

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.90  E-value=0.0012  Score=60.40  Aligned_cols=128  Identities=15%  Similarity=0.161  Sum_probs=63.8

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHH
Q 021465           58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHI  134 (312)
Q Consensus        58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~  134 (312)
                      +|.+|...=..|......|+.++..++..+..+...+.+++.+.   +..|..+.+++.+.+..+..+-.-| |+..+..
T Consensus        19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~k-E~~aL~k   97 (256)
T 3na7_A           19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER-ELRSLNI   97 (256)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS-HHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH-HHHHHHH
Confidence            34444444444555566666666666666666655555555443   5666666677766666543222212 3444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465          135 EAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       135 e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE  189 (312)
                      |+..+......|-.++..++..++..+.   .+..+.+.++.++.++...++.++
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~---~l~~~~~~l~~~~~~l~~~~~~~~  149 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSE---KQEDLKKEMLELEKLALELESLVE  149 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444443   333333445555555555554444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.61  E-value=8.9e-05  Score=80.96  Aligned_cols=40  Identities=10%  Similarity=0.237  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhH
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIP   88 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq   88 (312)
                      +++|..-..++.++-..-..|......|++++..++.+++
T Consensus       863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.58  E-value=7.2e-05  Score=81.65  Aligned_cols=44  Identities=11%  Similarity=0.221  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      +.++.....++..|-..=.++......++..+..+++++..+..
T Consensus       856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~  899 (1184)
T 1i84_S          856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE  899 (1184)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445444444444444444444555555555544443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.58  E-value=0.0012  Score=71.90  Aligned_cols=120  Identities=10%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 021465           62 LARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR  141 (312)
Q Consensus        62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~  141 (312)
                      |...|..|......|++.|.....+...|...+..++...+.++-+|       +.++...+.+.+|+.+++.++.+|..
T Consensus       919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L-------~~~l~~le~~~~e~~~~~~~v~~L~~  991 (1080)
T 2dfs_A          919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLSLQE  991 (1080)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555444443333333333333       33333333333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHH
Q 021465          142 ARQELTSKIQQASEALHKARLEVKNL-PDLHAELDSLRQEHRRLRATF  188 (312)
Q Consensus       142 ~rqeL~aevq~l~~EL~r~kad~qql-~alraELe~LrqElq~~Raai  188 (312)
                      .-.+|..+++.+.+|....+...+++ ..|...+..|++|.+.+|..+
T Consensus       992 e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A          992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333332221111 233344445555555555543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.50  E-value=0.011  Score=53.97  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=22.2

Q ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 021465           58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHT   99 (312)
Q Consensus        58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~a   99 (312)
                      ++|.|...=.+|......|..+|..++.++..+...+..+++
T Consensus        12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~   53 (256)
T 3na7_A           12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEE   53 (256)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344454444555555555555555555555555554444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.31  E-value=0.014  Score=69.62  Aligned_cols=133  Identities=11%  Similarity=0.079  Sum_probs=57.0

Q ss_pred             hhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 021465           95 RNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAEL  174 (312)
Q Consensus        95 ~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraEL  174 (312)
                      ..++.|-..+--+|.+|....|..|..+..=+++.++.+.++++....-++-.++++..+.+.++.=+++.=..-+|+++
T Consensus      1937 ~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l 2016 (3245)
T 3vkg_A         1937 KDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEV 2016 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHH
Confidence            34444444444455555555554444444444444444444433333323333333333333222111111112344555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          175 DSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       175 e~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ..+.+++..+++.+..-++.-.++-++++.++.++....+|.++|+.++...+
T Consensus      2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A         2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554444444444444555555555555555555555554444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.14  E-value=0.061  Score=64.41  Aligned_cols=76  Identities=11%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          149 KIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       149 evq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae  227 (312)
                      ++..+.++|+..++   ++.+.+++|..+.+++..+++.++.-.++...+-.+++..++.|..-.+=+..|-.|-.++.
T Consensus      2015 ~l~~ae~~l~~~~~---~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A         2015 EVEQLENAANELKL---KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence            34445555555554   45556666666666666666666665666666666666666666665555555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.12  E-value=0.0037  Score=62.11  Aligned_cols=34  Identities=15%  Similarity=0.104  Sum_probs=21.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465          197 DNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRG  230 (312)
Q Consensus       197 elleq~qaMEknL~~marEvekLrAEIanaekra  230 (312)
                      ++-.+.+.+++.+.++.+|..+++++|...+.+.
T Consensus       548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333445556666666777777777777766554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.07  E-value=0.0093  Score=59.17  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHH
Q 021465          169 DLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKN  208 (312)
Q Consensus       169 alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEkn  208 (312)
                      +.+.+++.+++|..+.+..++..|+..+++-+++....++
T Consensus       534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~  573 (597)
T 3oja_B          534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQK  573 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            3335555555566666665555555555444444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.91  E-value=0.027  Score=61.38  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          145 ELTSKIQQASEALHK  159 (312)
Q Consensus       145 eL~aevq~l~~EL~r  159 (312)
                      +|..++..+++++.+
T Consensus       988 ~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A          988 SLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.65  E-value=0.19  Score=43.94  Aligned_cols=62  Identities=16%  Similarity=0.131  Sum_probs=33.0

Q ss_pred             hhHHHHHHHHHhhhhhHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          101 SDSHIRVLLDKIAKMEADC----KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       101 ~e~qiR~L~ek~~k~Eael----ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      .|...|+|-++...++..-    +.+-.|...|.+.|.+-......-.+|...++.|..||.+.+.
T Consensus        46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~  111 (168)
T 3o0z_A           46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH  111 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666655432    2333344455555555554444445555566666666665554

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.43  E-value=0.32  Score=43.24  Aligned_cols=147  Identities=14%  Similarity=0.223  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQ  152 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~  152 (312)
                      ....++.+..++.|+.-....-..+.+|-|.++..+..+...+...   +..|+.|++..+...+.   ...+....+..
T Consensus        19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~---~~~L~~E~e~~k~K~~~---~~~e~~~~~~~   92 (189)
T 2v71_A           19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD---NQRLKYEVEALKEKLEH---QYAQSYKQVSV   92 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            3456788899999999998888889998888888888887776643   34566666666655443   33344445555


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH----HHHHHHhhcHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 021465          153 ASEALHKARLEVKNLPDLHAELDSLRQEHRRLRA----TFEYEKGLNIDNVEQLQAMEKNLVGMA---REMEKLHAEVVN  225 (312)
Q Consensus       153 l~~EL~r~kad~qql~alraELe~LrqElq~~Ra----aiE~EKk~~~elleq~qaMEknL~~ma---rEvekLrAEIan  225 (312)
                      |..+|...+..+..+-.-..+|+.....+++...    +++.--..+...|+...-++..|++-.   .+++.|+-|+..
T Consensus        93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rD  172 (189)
T 2v71_A           93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARD  172 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555444444444555555555554433    333334444555666655555555422   244455555543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.27  E-value=0.38  Score=39.71  Aligned_cols=111  Identities=15%  Similarity=0.298  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 021465          103 SHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHR  182 (312)
Q Consensus       103 ~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq  182 (312)
                      .+|+.+.+.+.++...+...+..+.+|+.   ...+|.....+|..+++.-+.-+..+..   ....+.+.-..|...+.
T Consensus        13 ~E~~~~~eel~~lke~l~k~e~~r~ele~---~~~~l~~Ek~~L~~qL~~E~~~l~e~EE---~~~~L~~~k~eLe~~l~   86 (129)
T 2fxo_A           13 KEMASMKEEFTRLKEALEKSEARRKELEE---KMVSLLQEKNDLQLQVQAEQDNLADAEE---RCDQLIKNKIQLEAKVK   86 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH
Confidence            35555555555555555444444444432   2344455555555555555444443332   11222222223334444


Q ss_pred             HHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHH
Q 021465          183 RLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKL  219 (312)
Q Consensus       183 ~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekL  219 (312)
                      .+...++.+...+.++...-+.++.++..+...++.+
T Consensus        87 el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           87 EMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666665555555554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.16  E-value=0.59  Score=40.83  Aligned_cols=124  Identities=16%  Similarity=0.214  Sum_probs=88.0

Q ss_pred             hhhhhchhhHHHHHHHHHhhhhhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Q 021465           94 IRNIHTESDSHIRVLLDKIAKMEADCK-AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHA  172 (312)
Q Consensus        94 ~~~~~ae~e~qiR~L~ek~~k~Eaelr-a~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alra  172 (312)
                      ...+++|.|.     ..|..|.-+|++ ....+..-+..++..+..|...+..|-.++..|...|...+.+-.+...+.+
T Consensus        19 n~kLk~EsE~-----~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~   93 (168)
T 3o0z_A           19 NDLLRTESDT-----AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIG   93 (168)
T ss_dssp             HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666643     456777777875 5566666777778888888899999999999999999888877766666555


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHH----HHHHHHHHH
Q 021465          173 ----ELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMA----REMEKLHAE  222 (312)
Q Consensus       173 ----ELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~ma----rEvekLrAE  222 (312)
                          -+..|..|+.+.+.....-...+..+.+.+-.+||...++.    =++..|..-
T Consensus        94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~  151 (168)
T 3o0z_A           94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence                45778899999988876666666666666666666666555    444444433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.71  E-value=0.71  Score=38.06  Aligned_cols=104  Identities=13%  Similarity=0.154  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-  202 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-  202 (312)
                      .+..++.+++..+.+....|++|-.+...+..+...++..++.--..-++.+.+..-+...+..++...+.-.+.+++. 
T Consensus        17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeee   96 (129)
T 2fxo_A           17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEE   96 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556777777777777777777777777777777666654433344445666666666666666666655555555554 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 ---QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       203 ---qaMEknL~~marEvekLrAEIanae  227 (312)
                         ..+...--.+..++..|+.+|...+
T Consensus        97 e~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           97 EMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3333333334446666666665443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=95.45  E-value=0.11  Score=52.69  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          173 ELDSLRQEHR-RLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       173 ELe~LrqElq-~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      +.+....|+- .+|..|+|-|..-..++.++++++++|..+..+|+||+-.|.
T Consensus       103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444 556666666666666667777777777777777777777776

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=95.38  E-value=0.21  Score=40.81  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHH
Q 021465          148 SKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKL  219 (312)
Q Consensus       148 aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekL  219 (312)
                      .++..+++++.+.+.++       ..|.-|++.+.-.+..|+.|+..+..+-+....++.++..+.+++.+|
T Consensus        45 ~~idelk~ei~q~~~~l-------E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l  109 (110)
T 2v4h_A           45 ELIDKLKEEAEQHKIVM-------ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL  109 (110)
T ss_dssp             HHHHHHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            33445555666555444       446667777778888888888888887777777777777777766554

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=95.20  E-value=0.01  Score=50.75  Aligned_cols=60  Identities=15%  Similarity=0.082  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      ++.+|...+...+++.+.-+.|.+++..+..+++++..++|..++.|   .+|+.++...|.+
T Consensus        71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASR---qgLrRDLeASReA  130 (146)
T 2xnx_M           71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR---QSLRRDLDASREA  130 (146)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence            33444444444444444444555566667777777777777666666   4566677666665

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=95.08  E-value=0.94  Score=35.84  Aligned_cols=87  Identities=20%  Similarity=0.280  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHH
Q 021465          131 QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLV  210 (312)
Q Consensus       131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~  210 (312)
                      .+..+++.|...-..|+.++..+.++=+.+..   +|.++.++.+.+.++=...-..+-.-+....+..++++..+..|.
T Consensus         8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~---el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~   84 (96)
T 3q8t_A            8 QLQRELKELALEEERLIQELEDVEKNRKVVAE---NLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR   84 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455555555444444332   233333444444332222222222223333445555566666666


Q ss_pred             HHHHHHHHHH
Q 021465          211 GMAREMEKLH  220 (312)
Q Consensus       211 ~marEvekLr  220 (312)
                      --...+++|+
T Consensus        85 ~~~~qLdkL~   94 (96)
T 3q8t_A           85 YAQMQLDKLK   94 (96)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            6666777765

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.78  E-value=0.62  Score=39.23  Aligned_cols=83  Identities=17%  Similarity=0.210  Sum_probs=40.9

Q ss_pred             chhhHHHHHHHHH--hhhhhHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 021465           99 TESDSHIRVLLDK--IAKMEADCKAG---ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAE  173 (312)
Q Consensus        99 ae~e~qiR~L~ek--~~k~Eaelra~---e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraE  173 (312)
                      ..-|.+|+++..+  ...+..+-.++   =.+=.|+.+++.+...|...-+++..++..++.+|...+.   +++.++.+
T Consensus        35 ~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~---k~e~~~~e  111 (138)
T 3hnw_A           35 SYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI---KAESSAKE  111 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            3345567777633  55554432111   1234466666666666655555555555555555555443   33334444


Q ss_pred             HHHHHHHHHHH
Q 021465          174 LDSLRQEHRRL  184 (312)
Q Consensus       174 Le~LrqElq~~  184 (312)
                      ++.+++++..+
T Consensus       112 ~~~l~~~~~~l  122 (138)
T 3hnw_A          112 IKELKSEINKY  122 (138)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444333333

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=94.77  E-value=0.89  Score=36.75  Aligned_cols=88  Identities=19%  Similarity=0.304  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEA-LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ  203 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~E-L~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q  203 (312)
                      +-+.|-..++-...+...+++|..++..+..+ ..+.+..+.+|+.++.||+.-+.|++.++.+++.-......+..++.
T Consensus        13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~   92 (107)
T 2no2_A           13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFA   92 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456666666666667777777777776533 35566667788888888888888888888876665555555555554


Q ss_pred             HHHHHHHHH
Q 021465          204 AMEKNLVGM  212 (312)
Q Consensus       204 aMEknL~~m  212 (312)
                      ...+..+.+
T Consensus        93 ~l~~Ek~~L  101 (107)
T 2no2_A           93 ELEKERDSL  101 (107)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=94.67  E-value=0.21  Score=50.60  Aligned_cols=82  Identities=13%  Similarity=0.246  Sum_probs=45.8

Q ss_pred             HhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Q 021465           93 HIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHA  172 (312)
Q Consensus        93 ~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alra  172 (312)
                      .+.+-..+.+..++.+++...+             .+.+....-..+...-.+|-..++-|+.+|...-   ++|-+|+.
T Consensus        75 dlsKnsKdseqy~k~~~E~Lr~-------------rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl---snIrvLQs  138 (562)
T 3ghg_A           75 EYQKNNKDSHSLTTNIMEILRG-------------DFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV---QHIQLLQK  138 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSS-------------HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHhhchhHHHHHHHHHHHHHH-------------HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            3344455556667766665433             2222221111222233345555556666665443   36777778


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          173 ELDSLRQEHRRLRATFEY  190 (312)
Q Consensus       173 ELe~LrqElq~~RaaiE~  190 (312)
                      -|+.++.+++++..+|+-
T Consensus       139 nLedq~~kIQRLEvDIdi  156 (562)
T 3ghg_A          139 NVRAQLVDMKRLEVDIDI  156 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888887665

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=93.86  E-value=1.3  Score=36.58  Aligned_cols=53  Identities=26%  Similarity=0.346  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT  187 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa  187 (312)
                      ++.|++-|...++-.|+   .-++|-.|++.|.+.|..+.          +|++.||.+.+.+...
T Consensus        55 V~tL~~SL~~ekaq~q~---~vqeLqgEI~~Lnq~Lq~a~----------ae~erlr~~~~~~~~r  107 (121)
T 3mq7_A           55 VMALMASLDAEKAQGQK---KVEELEGEITTLNHKLQDAS----------AEVERLRRENQVLSVR  107 (121)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhchhhhhH
Confidence            34455555544443322   23444455555555444444          4555555555544444

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=93.81  E-value=1.8  Score=43.46  Aligned_cols=99  Identities=15%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH--
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL--  202 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~--  202 (312)
                      ...+|...+.|+-+.....+++.+.++.-..|+....      .++++|.+.+++.-..+++.+|.+++.+.+-++.-  
T Consensus         7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n------~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~   80 (497)
T 3iox_A            7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAAN------AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQK   80 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777666665544      35678888999888888888888888877777655  


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465          203 --QAMEKNLVGMAREMEKLHAEVVNAEMR  229 (312)
Q Consensus       203 --qaMEknL~~marEvekLrAEIanaekr  229 (312)
                        ..+++.|.....+..++.++++.+++.
T Consensus        81 ~~AeY~~kl~aYe~~~~~~~k~lae~ek~  109 (497)
T 3iox_A           81 DLADYPVKLKAYEDEQTSIKAALAELEKH  109 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence              667777888888888888888887753

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.74  E-value=2.1  Score=34.18  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ  203 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q  203 (312)
                      +|.++++.+|.++..|.........++..|+.+|.+.+.   .-...-.+...+.+|++.+=++          +.++..
T Consensus         2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~---~R~~aE~~~~~ie~ElEeLTas----------LFeEAN   68 (97)
T 2eqb_B            2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENE---LRTKAEEEADKLNKEVEDLTAS----------LFDEAN   68 (97)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
T ss_pred             cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence            345566677777777777777788888888888877774   1122223333344444444443          333332


Q ss_pred             HH----HHHHHHHHHHHHHHHHHHHHH
Q 021465          204 AM----EKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       204 aM----EknL~~marEvekLrAEIana  226 (312)
                      .|    .+.-.......++|+++|...
T Consensus        69 ~MVa~ar~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           69 NMVADARKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            22    333444555777787777653

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.59  E-value=1  Score=37.10  Aligned_cols=19  Identities=16%  Similarity=0.508  Sum_probs=4.3

Q ss_pred             HHHHHHHhHHHHHHhhhhh
Q 021465           80 LAAAQQEIPRIKAHIRNIH   98 (312)
Q Consensus        80 L~aaq~Elq~L~~~~~~~~   98 (312)
                      |..++.||..|+..|..++
T Consensus        33 l~~~k~Ei~elrr~iq~L~   51 (131)
T 3tnu_A           33 VQSGKSEISELRRTMQNLE   51 (131)
T ss_dssp             --------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=93.50  E-value=0.52  Score=36.63  Aligned_cols=50  Identities=18%  Similarity=0.249  Sum_probs=37.3

Q ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          112 IAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       112 ~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      -.|.|.|+.....+..++.-+|.++..+.-.+-+|-+++..|+.||.=.+
T Consensus        34 k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk   83 (86)
T 3swk_A           34 REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK   83 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44667777777777778888888888888888888888888877776544

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=93.46  E-value=0.24  Score=38.45  Aligned_cols=48  Identities=10%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          113 AKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA  160 (312)
Q Consensus       113 ~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~  160 (312)
                      ..+|+|+++-+.+..||.++|.+...+.+.-++--.+.+.|..||.+.
T Consensus        17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l   64 (81)
T 1wt6_A           17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347889999999999999999888887764444444444444443333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.24  E-value=1.3  Score=36.42  Aligned_cols=6  Identities=17%  Similarity=0.462  Sum_probs=0.0

Q ss_pred             HHHHhh
Q 021465           57 AEIERL   62 (312)
Q Consensus        57 ~Ei~~L   62 (312)
                      .|++..
T Consensus        18 eel~~~   23 (129)
T 3tnu_B           18 EELQQT   23 (129)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=93.15  E-value=2.3  Score=41.00  Aligned_cols=76  Identities=17%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          145 ELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       145 eL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa  224 (312)
                      +...-.+-|++.|.+.+.   .++.+++.-..-..-...++.++|.++....   ..+++.|..+..+..+++.++++|.
T Consensus       394 e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  467 (471)
T 3mq9_A          394 EARNVTHLLQQELTEAQK---GFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVE  467 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhh---hHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566677777774   5566666666666777777777776665522   4667778888888888888888887


Q ss_pred             HH
Q 021465          225 NA  226 (312)
Q Consensus       225 na  226 (312)
                      +.
T Consensus       468 ~~  469 (471)
T 3mq9_A          468 RL  469 (471)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.00  E-value=2.8  Score=33.24  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEA  156 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~E  156 (312)
                      ++|..+..++.+......--..+-.++..+...
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~   38 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEER   38 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444443333333333333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.98  E-value=0.85  Score=38.38  Aligned_cols=64  Identities=14%  Similarity=0.170  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGM  212 (312)
Q Consensus       146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~m  212 (312)
                      +..++-.++++....+.   ++..+..|+..|+.|+..++-.++.-++...++-++.+..+++++.+
T Consensus        66 iadEl~k~~~~~~~L~~---~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSL---DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444443   44555566666666666666555554444444444444444443333

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=92.72  E-value=0.25  Score=35.22  Aligned_cols=43  Identities=28%  Similarity=0.376  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHH
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIK   91 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~   91 (312)
                      |+++.....++..|..-|.+|+.++..-+++|..++.+|.+|.
T Consensus         8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A            8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8898888899999999999999999999999999999988873

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=92.33  E-value=2.5  Score=34.65  Aligned_cols=18  Identities=6%  Similarity=-0.081  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHhhcHHh
Q 021465          181 HRRLRATFEYEKGLNIDN  198 (312)
Q Consensus       181 lq~~RaaiE~EKk~~~el  198 (312)
                      +...+.+++.|..+|-.+
T Consensus       108 LlnvKl~Ld~EIatYRkL  125 (129)
T 3tnu_B          108 LMNTKLALDVEIATYRKL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            333344444444444333

>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}

Probab=92.25  E-value=6.2  Score=35.46  Aligned_cols=156  Identities=10%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh-HHHHHHHHHhhhhh----HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESD-SHIRVLLDKIAKME----ADCKAGERLKKDLQQAHIEAQSLARAR  143 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e-~qiR~L~ek~~k~E----aelra~e~lk~EL~q~r~e~q~L~~~r  143 (312)
                      +-..|..++.+|.+.+..+..|......+....- .....+..+...+.    .-......-+..|++.. +.+.|...-
T Consensus       150 l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~  228 (323)
T 3edv_A          150 LQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMV  228 (323)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3445666677777776666666665555543221 01122222222221    11223333344455444 355666666


Q ss_pred             HHHHHHHHHHHHHHHHHH--HhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHH
Q 021465          144 QELTSKIQQASEALHKAR--LEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREME  217 (312)
Q Consensus       144 qeL~aevq~l~~EL~r~k--ad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEknL~~marEve  217 (312)
                      .+|..=+......|....  .|+..++.+....+.++.|+...+..|+.-...-..++...    ..+...|..+....+
T Consensus       229 ~~l~~Wl~~~~~~l~~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~L~~~w~  308 (323)
T 3edv_A          229 RDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRK  308 (323)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence            666666665555554211  12222233333334444444444443333222222222211    445556666666666


Q ss_pred             HHHHHHHH
Q 021465          218 KLHAEVVN  225 (312)
Q Consensus       218 kLrAEIan  225 (312)
                      +|......
T Consensus       309 ~l~~~w~~  316 (323)
T 3edv_A          309 EMIDKWED  316 (323)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.20  E-value=5.1  Score=34.41  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTES  101 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~  101 (312)
                      ..|..+|..+.++|..+..-+..+...+
T Consensus        16 s~LeD~L~~~R~el~~~~~ri~~lE~~r   43 (154)
T 2ocy_A           16 SHLEEQLNKSLKTIASQKAAIENYNQLK   43 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777776666444444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=92.15  E-value=1.5  Score=34.00  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=42.1

Q ss_pred             hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 021465          113 AKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL  184 (312)
Q Consensus       113 ~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~  184 (312)
                      ++++.++   +.++..++..|.....=.+.|+.+-+++..+++++..+--   .--.|.+.+++|+.||.=+
T Consensus        17 ~~l~~e~---dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l---~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           17 ARVEVER---DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL---ARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            4444443   4567777777777777777888888888888888866543   2234445555665555433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=91.95  E-value=6.3  Score=34.90  Aligned_cols=79  Identities=19%  Similarity=0.250  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHH
Q 021465          104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLE-VKNLPDLHAELDSLRQEHR  182 (312)
Q Consensus       104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad-~qql~alraELe~LrqElq  182 (312)
                      ..-++.+-+.-||++|      -++|.++....+.|...-..|..++...+..+...+.+ ..++..|..+|..++.+..
T Consensus        32 El~EFqesSrELE~EL------E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~  105 (189)
T 2v71_A           32 ELVEFQEGSRELEAEL------EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE  105 (189)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777788655      34444444444445555455555555555555444432 2245666666666666666


Q ss_pred             HHHHHH
Q 021465          183 RLRATF  188 (312)
Q Consensus       183 ~~Raai  188 (312)
                      .++..|
T Consensus       106 ~l~~~i  111 (189)
T 2v71_A          106 QLHKYV  111 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=91.73  E-value=2.5  Score=34.59  Aligned_cols=94  Identities=17%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTS  148 (312)
Q Consensus        69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~a  148 (312)
                      |-...+.|+.+|..+..|-..|......-+.++..||-+|.+++...|..|..   |++-..|          .+.+...
T Consensus        11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~---Lqq~fsq----------~q~~vq~   77 (112)
T 1x79_B           11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEE---LQQGLSQ----------AKRDVQE   77 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----------HHHHHHH
Confidence            33445667777777777777777778888888899999999999888876642   3333333          3334445


Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465          149 KIQQASEALHKARLEVKNLPDLHAELDSLR  178 (312)
Q Consensus       149 evq~l~~EL~r~kad~qql~alraELe~Lr  178 (312)
                      +++.|+.+-.+...   +|..|..|-+.|.
T Consensus        78 qL~~Lt~~Re~V~~---eL~rLQ~eNd~L~  104 (112)
T 1x79_B           78 QMAVLMQSREQVSE---ELVRLQKDNDSLQ  104 (112)
T ss_dssp             HHHHHHHHHHHHHT---C------------
T ss_pred             HHHHHHHHHHHHHH---HHHHHHhhccchh
Confidence            66666666666653   4555555555544

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=91.70  E-value=2.5  Score=32.37  Aligned_cols=67  Identities=15%  Similarity=0.273  Sum_probs=42.2

Q ss_pred             HHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465           89 RIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH  158 (312)
Q Consensus        89 ~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~  158 (312)
                      .|...+.++..-.+.++..+-.++..+|++|.   .+|.++..--.|-|.|...+-.|-.++..-++-|+
T Consensus        12 sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~---~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE   78 (84)
T 1gk4_A           12 SLERQMREMEENFAVEAANYQDTIGRLQDEIQ---NMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE   78 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            33444445555556667777777777776553   36666666666777777777777777666666554

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.67  E-value=4.1  Score=32.12  Aligned_cols=39  Identities=10%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      +.+..+|..++.+...|...-.....++..+..++....
T Consensus        35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~   73 (96)
T 3q8t_A           35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD   73 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555444444444444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=91.59  E-value=3.8  Score=33.44  Aligned_cols=47  Identities=19%  Similarity=0.142  Sum_probs=19.0

Q ss_pred             hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          115 MEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       115 ~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      .++++--++-||+.+.--+.|-..=-+.|..+..+...|..+|+.++
T Consensus        57 ~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq  103 (110)
T 2v4h_A           57 HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ  103 (110)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence            33344334444444444444433333333334444444444443333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=91.59  E-value=6.9  Score=39.04  Aligned_cols=98  Identities=10%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465          124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ  203 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q  203 (312)
                      .++..|++++-.+++|...-.+-..-++.++..+...+.   +++.+..-|.....++++.+..|+.-..  ...-.+++
T Consensus        97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~---Qi~en~n~~~~~~~~~e~~~~~i~~~~~--~~~~~~i~  171 (464)
T 1m1j_B           97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQK---QRKDNDIILSEYNTEMELHYNYIKDNLD--NNIPSSLR  171 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccc---cccchhhHHHHHHHHHHHHHHHHHHHHh--ccchhHHH
Confidence            345555555555555543333333333444444444442   4555555555555666655555432111  11223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021465          204 AMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       204 aMEknL~~marEvekLrAEIana  226 (312)
                      .++..+..+...|.+|...|...
T Consensus       172 ~L~~~~~~l~~ki~~l~~~~~~~  194 (464)
T 1m1j_B          172 VLRAVIDSLHKKIQKLENAIATQ  194 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666667776666543

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=91.49  E-value=0.89  Score=36.21  Aligned_cols=65  Identities=20%  Similarity=0.329  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          150 IQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHA  221 (312)
Q Consensus       150 vq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrA  221 (312)
                      +..|+.++.+.+.++       ..++-|++.+.-.+..|..|+..+..+-++...+...+..+.++..+|..
T Consensus        25 id~lke~~~q~~~~~-------E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~   89 (94)
T 3jsv_C           25 IDKLKEEAEQHKIVM-------ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV   89 (94)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666666544       55566666667777777777777766666666666666666666666654

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.35  E-value=4.7  Score=33.11  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=14.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465          169 DLHAELDSLRQEHRRLRATFEYEKGLNIDNV  199 (312)
Q Consensus       169 alraELe~LrqElq~~RaaiE~EKk~~~ell  199 (312)
                      ..+..|..|..++..+|..++.-...|.+++
T Consensus        81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll  111 (131)
T 3tnu_A           81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILL  111 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555554444433443333

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=91.33  E-value=3.2  Score=41.69  Aligned_cols=59  Identities=17%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHH
Q 021465           75 TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEA  136 (312)
Q Consensus        75 ~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~  136 (312)
                      .-+-+|++-|.||-|......+++++-|.-+.+.-.+.+.++||   ++++|+.=.+++++-
T Consensus         6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae---NeaikkrNa~aka~Y   64 (497)
T 3iox_A            6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE---NTAIKKRNADAKADY   64 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999888888888877764   455554444444443

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=91.23  E-value=0.57  Score=41.66  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAH   93 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~   93 (312)
                      .++++|..-|-.|+.|..+|.+|........+++.+++.+|+.++..
T Consensus        10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~   56 (190)
T 4emc_A           10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ   56 (190)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999888773

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=90.78  E-value=1.2  Score=35.15  Aligned_cols=18  Identities=6%  Similarity=0.283  Sum_probs=7.1

Q ss_pred             hhhhHhhhhhHHHHHHHH
Q 021465          113 AKMEADCKAGERLKKDLQ  130 (312)
Q Consensus       113 ~k~Eaelra~e~lk~EL~  130 (312)
                      ..++.+++.++.+..||.
T Consensus        30 ~~l~~~~~e~~~~~~eL~   47 (117)
T 2zqm_A           30 QKVQLELTEAKKALDEIE   47 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444444443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=90.60  E-value=4  Score=35.04  Aligned_cols=43  Identities=26%  Similarity=0.233  Sum_probs=25.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      +.++.+++|+..++.++..+....+.|..+-+.|-+-+.+.++
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~  138 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE  138 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666666666666666555544443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.98  E-value=5.4  Score=31.87  Aligned_cols=18  Identities=6%  Similarity=0.231  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHhHHHHHH
Q 021465           76 MREDLAAAQQEIPRIKAH   93 (312)
Q Consensus        76 L~qeL~aaq~Elq~L~~~   93 (312)
                      |.++|..++++|++|...
T Consensus         3 ~~~~~e~lre~l~~le~~   20 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRE   20 (97)
T ss_dssp             --CCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHH
Confidence            455666666777666553

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=89.88  E-value=1.4  Score=36.40  Aligned_cols=39  Identities=31%  Similarity=0.434  Sum_probs=24.7

Q ss_pred             HHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhh
Q 021465           82 AAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCK  120 (312)
Q Consensus        82 aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelr  120 (312)
                      .++.||.+|+..+..|+.|.-..|..|..++..||++|-
T Consensus        19 ~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~   57 (120)
T 3i00_A           19 RLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLA   57 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555566666677777777777776554

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=89.18  E-value=2.3  Score=37.06  Aligned_cols=23  Identities=9%  Similarity=0.234  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIan  225 (312)
                      ++..+.+..+..++...|.+..+
T Consensus       116 ~aL~~Ei~~Lr~qL~~~R~k~~~  138 (175)
T 3lay_A          116 NAVAKEMESLGQKLDEQRVKRDV  138 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444443

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=89.17  E-value=3.1  Score=35.53  Aligned_cols=22  Identities=9%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIa  224 (312)
                      +...++|+.....-.++.++++
T Consensus       118 qgLrRDLeASReAKKqlEadl~  139 (146)
T 2xnx_M          118 QSLRRDLDASREAKKQVEKDLL  139 (146)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555444444444444443

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=89.16  E-value=8.4  Score=31.77  Aligned_cols=53  Identities=19%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHhh----cHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465          178 RQEHRRLRATFEYEKGL----NIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRG  230 (312)
Q Consensus       178 rqElq~~RaaiE~EKk~----~~elleq~qaMEknL~~marEvekLrAEIanaekra  230 (312)
                      .+-...++++++.||..    ..++-.+++.+.++|.....++|+||++..-...|.
T Consensus        52 NqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~  108 (121)
T 3mq7_A           52 NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence            34444455555554444    344445557788888888889999998887655544

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.05  E-value=12  Score=35.92  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=22.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRATFEYEK  192 (312)
Q Consensus       166 ql~alraELe~LrqElq~~RaaiE~EK  192 (312)
                      .|.++..||-.+.++|+.+++.|+..|
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          444 KVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            678888889999999999999887654

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.99  E-value=7.1  Score=30.66  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      +++|..+..++.+......--..+-.++..+.....+..
T Consensus         5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E   43 (101)
T 3u59_A            5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLE   43 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444444444444443444444444444433333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.98  E-value=14  Score=35.58  Aligned_cols=55  Identities=9%  Similarity=0.052  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       172 aELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEknL~~marEvekLrAEIana  226 (312)
                      ...+.+.++.+..|..++.+.+...+.++++    +..++.+.....++++.++.+.++
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (487)
T 3oja_A          417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL  475 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence            3344455555555555555444444444444    233333444444444444444443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=88.91  E-value=6.2  Score=33.86  Aligned_cols=65  Identities=18%  Similarity=0.106  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465          135 EAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL  202 (312)
Q Consensus       135 e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~  202 (312)
                      .+..|......|..++..+..+|.....   .++.++.|+.+|+-++-.+...+..-+++|.++++..
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K---~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW  133 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNK---NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW  133 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555556666666655442   5667777888888777777777777777777777765

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.80  E-value=2.4  Score=32.83  Aligned_cols=32  Identities=16%  Similarity=0.169  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465          200 EQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH  231 (312)
Q Consensus       200 eq~qaMEknL~~marEvekLrAEIanaekra~  231 (312)
                      ++.+....+-..+.++.++|+.|..+++.|.+
T Consensus        41 ~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A           41 QEVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444455566666666665555543

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=88.70  E-value=3  Score=32.79  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVVNAE  227 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIanae  227 (312)
                      +.+++++..+..++++++..|....
T Consensus        87 ~~le~~~~~l~~~l~~lk~~l~~~~  111 (117)
T 2zqm_A           87 NALERQEKKLNEKLKELTAQIQSAL  111 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666666544

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=88.63  E-value=6.4  Score=40.18  Aligned_cols=87  Identities=13%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhhhh---HHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhH
Q 021465           47 LLEDKIAVQAAEIERLARDNHRLAAS---HITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGE  123 (312)
Q Consensus        47 ~lE~~l~~q~~Ei~~L~~dNqrLa~t---h~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e  123 (312)
                      +|.+.|......-..++--++.|...   ....+..=.++++|.+.|.......+.--+.|-|.+.+.+..|+      +
T Consensus       460 vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~------~  533 (592)
T 1f5n_A          460 ILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT------E  533 (592)
T ss_dssp             HHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence            77777777777766676555555442   22233344455666666666555555555666666666666655      3


Q ss_pred             HHHHHHHHHHHHHHHH
Q 021465          124 RLKKDLQQAHIEAQSL  139 (312)
Q Consensus       124 ~lk~EL~q~r~e~q~L  139 (312)
                      .|..|-.+...|.+++
T Consensus       534 kme~~~~~~~~e~~~~  549 (592)
T 1f5n_A          534 KMENDRVQLLKEQERT  549 (592)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=88.43  E-value=11  Score=32.25  Aligned_cols=81  Identities=15%  Similarity=0.142  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          144 QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       144 qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEI  223 (312)
                      ..+-.++..|+..|..+..   ..+..-..+..|.+++.++-..+..+|..+....+.+...-..|.+|..-.-.|.-+|
T Consensus        73 d~yEeqIk~L~~kLKEAE~---RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~  149 (155)
T 2efr_A           73 DKYEEEIKVLSDKLKEAET---RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV  149 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            3444555555555544332   2233445566777888888888888888888888888666677777777777777777


Q ss_pred             HHHH
Q 021465          224 VNAE  227 (312)
Q Consensus       224 anae  227 (312)
                      ++..
T Consensus       150 ~~~~  153 (155)
T 2efr_A          150 ARLK  153 (155)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            6654

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=87.94  E-value=6.7  Score=32.04  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQ  201 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq  201 (312)
                      .+.|..++.|++-++.++...+++|....+.-+.+=.+      ++-.|..-++.-.+.|..+|.+|.--+..-.++|.+
T Consensus         8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~------qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~   81 (112)
T 1x79_B            8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSH------QISALVLRAQASEILLEELQQGLSQAKRDVQEQMAV   81 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777888888888888888888776655554332      666777777777777777777766555544444443


Q ss_pred             H
Q 021465          202 L  202 (312)
Q Consensus       202 ~  202 (312)
                      +
T Consensus        82 L   82 (112)
T 1x79_B           82 L   82 (112)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=87.91  E-value=6.8  Score=30.62  Aligned_cols=33  Identities=6%  Similarity=0.262  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          127 KDLQQAHIEAQSLARARQELTSKIQQASEALHK  159 (312)
Q Consensus       127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r  159 (312)
                      .++..+|..+..+...+..|..++..+..++.+
T Consensus        56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~   88 (93)
T 3s4r_A           56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMR   88 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=87.68  E-value=3.7  Score=31.63  Aligned_cols=52  Identities=19%  Similarity=0.167  Sum_probs=26.4

Q ss_pred             HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH  158 (312)
Q Consensus       104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~  158 (312)
                      ++..+-.++..+|++|.   .+|.++..--.|-|.|...+-.|-.++..-++-|+
T Consensus        29 ~l~~~q~~i~~lE~el~---~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE   80 (86)
T 1x8y_A           29 ERDTSRRLLAEKEREMA---EMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence            33344444444444432   24555555555555555555555555555555554

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=87.54  E-value=1.4  Score=38.49  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=9.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHH
Q 021465          166 NLPDLHAELDSLRQEHRRLRA  186 (312)
Q Consensus       166 ql~alraELe~LrqElq~~Ra  186 (312)
                      +|.++..||..|++++...|.
T Consensus       114 kI~aL~~Ei~~Lr~qL~~~R~  134 (175)
T 3lay_A          114 KINAVAKEMESLGQKLDEQRV  134 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=87.38  E-value=7.5  Score=30.00  Aligned_cols=38  Identities=13%  Similarity=0.062  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      +..++.+++..+.+....+++|-.+...+.++...+..
T Consensus        19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~   56 (89)
T 3bas_A           19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFG   56 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555544443

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=87.38  E-value=1.8  Score=30.87  Aligned_cols=41  Identities=12%  Similarity=0.157  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465          146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE  189 (312)
Q Consensus       146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE  189 (312)
                      |..+|+.|...+..++.   ++.+++.++...+.|..|+-.+|+
T Consensus         9 Lss~V~~L~~kVdqLss---dV~al~~~v~~ak~eA~RAN~RlD   49 (52)
T 1jcd_A            9 ASSDAQTANAKADQASN---DANAARSDAQAAKDDAARANQRAD   49 (52)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44444444444444443   334455666677777777777665

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=87.37  E-value=21  Score=36.34  Aligned_cols=63  Identities=17%  Similarity=0.266  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHH-----------------------HHHHHHHHH
Q 021465          168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAR-----------------------EMEKLHAEV  223 (312)
Q Consensus       168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-qaMEknL~~mar-----------------------EvekLrAEI  223 (312)
                      ++.+++.+.|.+-.......++..++.+.+++.|+ +.||++...+-+                       ++++|..||
T Consensus       497 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei  576 (592)
T 1f5n_A          497 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEI  576 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666555666666777778888888886 224433322222                       566677777


Q ss_pred             HHHHHhc
Q 021465          224 VNAEMRG  230 (312)
Q Consensus       224 anaekra  230 (312)
                      .+..++.
T Consensus       577 ~~l~~~~  583 (592)
T 1f5n_A          577 QDLQTKM  583 (592)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            7766653

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=86.89  E-value=9.9  Score=30.06  Aligned_cols=19  Identities=5%  Similarity=0.104  Sum_probs=7.8

Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 021465          122 GERLKKDLQQAHIEAQSLA  140 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~  140 (312)
                      ++.++.++..++..+.+|.
T Consensus        14 v~~I~~~i~~i~~~v~~l~   32 (127)
T 1ez3_A           14 VEEIRGFIDKIAENVEEVK   32 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=86.69  E-value=5.9  Score=31.02  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      ++.++.++.+++.++.+|.....++..++..+.+.|.....
T Consensus         5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~   45 (112)
T 1l8d_A            5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK   45 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45566677777777777777777777777777777766553

>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1

Probab=86.67  E-value=13  Score=31.14  Aligned_cols=56  Identities=5%  Similarity=0.102  Sum_probs=39.2

Q ss_pred             HHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          105 IRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL  162 (312)
Q Consensus       105 iR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka  162 (312)
                      +.+++|+...|...|+..+.++ .+.+++..++. ...-+.|+.+.+.+++++...+.
T Consensus         6 ~~~I~d~A~eL~~aI~eseeyk-~yk~A~~~i~~-D~eaq~li~eF~~~Q~~~~~~q~   61 (151)
T 2pih_A            6 KKDIVQQARNLAKMISETEEVD-FFKRAEAQINE-NDKVSTIVNQIKALQKQAVNLKH   61 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTBHHHH-HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888888888888888888 66666666653 33345566777777777766654

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.55  E-value=9.6  Score=30.25  Aligned_cols=51  Identities=18%  Similarity=0.143  Sum_probs=20.9

Q ss_pred             HhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          111 KIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       111 k~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k  161 (312)
                      .+.+.++++--++-||+.+.--+.|-+.=-+.|..+..+...+..+|..++
T Consensus        31 ~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq   81 (94)
T 3jsv_C           31 EAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ   81 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344444444444445544444444433333333333333333333333333

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=86.43  E-value=15  Score=35.92  Aligned_cols=15  Identities=13%  Similarity=-0.084  Sum_probs=5.7

Q ss_pred             hHHHHHHHHHHHHHH
Q 021465          169 DLHAELDSLRQEHRR  183 (312)
Q Consensus       169 alraELe~LrqElq~  183 (312)
                      .+....+.+++++..
T Consensus       289 ~l~~~~~~~~~~l~~  303 (517)
T 4ad8_A          289 DVVEFGAQAAEELAG  303 (517)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333334444333

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=86.18  E-value=12  Score=30.10  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=15.8

Q ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 021465          112 IAKMEADCKAGERLKKDLQQAHIEAQSLA  140 (312)
Q Consensus       112 ~~k~Eaelra~e~lk~EL~q~r~e~q~L~  140 (312)
                      ..|++.....++.++.+|..-..|++.|.
T Consensus        46 ~~k~~eq~~~le~lk~eL~~~~~el~~lq   74 (107)
T 2no2_A           46 QRKTQEQLEVLESLKQELATSQRELQVLQ   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566666666555555533

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=86.01  E-value=17  Score=36.31  Aligned_cols=50  Identities=16%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          177 LRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA  226 (312)
Q Consensus       177 LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIana  226 (312)
                      ..+-...+|..|+|-|..-..++..++.+..+|..+..+|++|+-.|.-.
T Consensus       109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q  158 (491)
T 1m1j_A          109 YGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK  158 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667777778777778888888999999999999999999988843

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=85.37  E-value=3.7  Score=31.49  Aligned_cols=17  Identities=29%  Similarity=0.464  Sum_probs=10.7

Q ss_pred             HHHHhhhhhhhhhhhhH
Q 021465           57 AEIERLARDNHRLAASH   73 (312)
Q Consensus        57 ~Ei~~L~~dNqrLa~th   73 (312)
                      .|++.|+.+|..|-.|+
T Consensus         9 kevEnLi~EN~eLl~TK   25 (77)
T 2w83_C            9 REVENLILENTQLLETK   25 (77)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45666666666666666

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=85.36  E-value=0.57  Score=47.62  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=14.4

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHhhhhhch
Q 021465           71 ASHITMREDLAAAQQEIPRIKAHIRNIHTE  100 (312)
Q Consensus        71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae  100 (312)
                      ..+..++|==+.|++|=.+-...-..+..|
T Consensus       297 ~d~~e~qqm~~~a~e~~~~~~~e~~~l~~~  326 (575)
T 2i1j_A          297 PDTIDVQQMKAQAREEKLAKQAQREKLQLE  326 (575)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555544444433344333

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=85.33  E-value=5.8  Score=30.61  Aligned_cols=21  Identities=5%  Similarity=0.390  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEV  223 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEI  223 (312)
                      +.+++++..+..++++++..|
T Consensus        82 ~~le~~~~~~~~~l~~lk~~l  102 (107)
T 1fxk_A           82 KTIERQEERVMKKLQEMQVNI  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555554444

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=85.16  E-value=20  Score=31.89  Aligned_cols=18  Identities=17%  Similarity=0.265  Sum_probs=8.1

Q ss_pred             hhhhhhhhhhHHHHHHHH
Q 021465           63 ARDNHRLAASHITMREDL   80 (312)
Q Consensus        63 ~~dNqrLa~th~~L~qeL   80 (312)
                      +.+..+++..|..+-+.|
T Consensus        75 l~~~e~~a~~h~~~a~~L   92 (301)
T 2efk_A           75 LQEVNDFAGQRELVAENL   92 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444454444444

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=85.08  E-value=7.4  Score=31.97  Aligned_cols=72  Identities=21%  Similarity=0.238  Sum_probs=33.7

Q ss_pred             hhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 021465           97 IHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDS  176 (312)
Q Consensus        97 ~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~  176 (312)
                      ...++|.+|..|.          +.++.||.+|+.++.|.|....   .|...|-.|..||+..+.   ..-..+.|.+.
T Consensus         9 ~~d~rD~~Ie~Lk----------reie~lk~ele~l~~E~q~~v~---ql~~~i~~Le~eL~e~r~---~~q~a~~e~e~   72 (120)
T 3i00_A            9 NKDEKDHLIERLY----------REISGLKAQLENMKTESQRVVL---QLKGHVSELEADLAEQQH---LRQQAADDCEF   72 (120)
T ss_dssp             -CCTHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            4455665554433          3346666666666666665433   233444444445444432   22223344444


Q ss_pred             HHHHHHHH
Q 021465          177 LRQEHRRL  184 (312)
Q Consensus       177 LrqElq~~  184 (312)
                      |+.|++.+
T Consensus        73 Lr~e~~~l   80 (120)
T 3i00_A           73 LRAELDEL   80 (120)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=84.99  E-value=8.3  Score=38.61  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=18.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQA  153 (312)
Q Consensus       121 a~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l  153 (312)
                      .+-.+-.+..++..+++.|.+.|+.++.++..+
T Consensus        71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~  103 (501)
T 1wle_A           71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRAL  103 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555566666666666666665543

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=84.91  E-value=12  Score=29.18  Aligned_cols=84  Identities=13%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhch-hhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 021465           74 ITMREDLAAAQQEIPRIKAHIRNIHTE-SDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSL---ARARQELTSK  149 (312)
Q Consensus        74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae-~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L---~~~rqeL~ae  149 (312)
                      ...+++...+..+|...-..+..+..| +-..|+.+..          .++-...=|.|...|++.+   .+.|..+.++
T Consensus         4 ~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~----------~ldEA~ell~qMelE~~~~~~p~~~R~~~~~k   73 (97)
T 3onj_A            4 ISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQ----------QQDELFDLLDQMDVEVNNSIGDASERATYKAK   73 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            345677888888888777666655433 2222222222          2234444567778888888   2678999999


Q ss_pred             HHHHHHHHHH-HHHhcccc
Q 021465          150 IQQASEALHK-ARLEVKNL  167 (312)
Q Consensus       150 vq~l~~EL~r-~kad~qql  167 (312)
                      +..-+.+|.+ .+.+++++
T Consensus        74 lr~Yk~dl~~~lk~~lk~l   92 (97)
T 3onj_A           74 LREWKKTIQSDIKRPLQSL   92 (97)
T ss_dssp             HHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999988 88655544

>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A

Probab=84.80  E-value=15  Score=30.20  Aligned_cols=39  Identities=26%  Similarity=0.254  Sum_probs=24.8

Q ss_pred             HHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCC
Q 021465          196 IDNVEQL-QAMEKNLVGMAREMEKLHAEVVNAE--MRGHAPN  234 (312)
Q Consensus       196 ~elleq~-qaMEknL~~marEvekLrAEIanae--kra~a~~  234 (312)
                      -+.+.++ +.|++-+-.+..++.+...-|-+.+  ++.|.||
T Consensus        70 k~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~lr~gn  111 (119)
T 3etw_A           70 KSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGN  111 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3444444 5556666666667777777777777  6666665

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=84.62  E-value=1.2  Score=41.08  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465           49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA   92 (312)
Q Consensus        49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~   92 (312)
                      |+++..-..++..|..-|.+|.+++..++++|..+++||.+|..
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88888889999999999999999999999999999999999864

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=84.57  E-value=9.7  Score=30.05  Aligned_cols=82  Identities=16%  Similarity=0.195  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhh-h-chhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 021465           73 HITMREDLAAAQQEIPRIKAHIRNI-H-TESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLA-RARQELTSK  149 (312)
Q Consensus        73 h~~L~qeL~aaq~Elq~L~~~~~~~-~-ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~-~~rqeL~ae  149 (312)
                      ....+++...+..+|.+.-..+... - .++...||++....          +-...=|.|...|++.+- +.|..+.++
T Consensus        17 Fe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~l----------dEA~eLl~qMelE~r~~p~s~R~~~~~k   86 (102)
T 2qyw_A           17 FEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQ----------QEANETLAEMEEELRYAPLTFRNPMMSK   86 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4556777777777777766655433 2 23333333333222          333334555566666653 457888888


Q ss_pred             HHHHHHHHHHHHHhc
Q 021465          150 IQQASEALHKARLEV  164 (312)
Q Consensus       150 vq~l~~EL~r~kad~  164 (312)
                      +..-+.+|.+.+.|+
T Consensus        87 lr~Yk~dL~~lk~el  101 (102)
T 2qyw_A           87 LRNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc
Confidence            888888888877644

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=84.57  E-value=7.2  Score=30.49  Aligned_cols=15  Identities=20%  Similarity=0.220  Sum_probs=8.3

Q ss_pred             HHHHHHHhhhhhHhh
Q 021465          105 IRVLLDKIAKMEADC  119 (312)
Q Consensus       105 iR~L~ek~~k~Eael  119 (312)
                      +|.|++....||+++
T Consensus        25 VR~LEqqN~~Le~~i   39 (93)
T 3s4r_A           25 VRFLEQQNKILLAEL   39 (93)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455555555555544

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.95  E-value=20  Score=30.77  Aligned_cols=18  Identities=11%  Similarity=0.228  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLH  220 (312)
Q Consensus       203 qaMEknL~~marEvekLr  220 (312)
                      +..+.-|.++..++..|.
T Consensus       125 ~e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A          125 REKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444444444444443

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=83.29  E-value=13  Score=28.25  Aligned_cols=20  Identities=5%  Similarity=0.061  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHhhcHHhH
Q 021465          180 EHRRLRATFEYEKGLNIDNV  199 (312)
Q Consensus       180 Elq~~RaaiE~EKk~~~ell  199 (312)
                      ++...+.+++.|..+|-.++
T Consensus        58 ~LlnvK~~Ld~EIatYRkLL   77 (84)
T 1gk4_A           58 DLLNVKMALDIEIATYRKLL   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHH
Confidence            33344444555555554444

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=82.34  E-value=7.5  Score=31.14  Aligned_cols=20  Identities=15%  Similarity=0.214  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 021465          206 EKNLVGMAREMEKLHAEVVN  225 (312)
Q Consensus       206 EknL~~marEvekLrAEIan  225 (312)
                      ++.+..+.+|+++||.-|..
T Consensus        74 ~~~~e~Lq~E~erLr~~v~~   93 (100)
T 1go4_E           74 REDHSQLQAECERLRGLLRA   93 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555544443

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=81.67  E-value=41  Score=32.83  Aligned_cols=19  Identities=5%  Similarity=-0.022  Sum_probs=8.2

Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 021465          167 LPDLHAELDSLRQEHRRLR  185 (312)
Q Consensus       167 l~alraELe~LrqElq~~R  185 (312)
                      +...|..-+...+|...++
T Consensus       152 l~KaKk~Y~~~cke~e~a~  170 (486)
T 3haj_A          152 VEAAKKAHHAACKEEKLAI  170 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.62  E-value=2.2  Score=35.99  Aligned_cols=17  Identities=12%  Similarity=0.309  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021465          145 ELTSKIQQASEALHKAR  161 (312)
Q Consensus       145 eL~aevq~l~~EL~r~k  161 (312)
                      .+..++..|..+|.+.+
T Consensus        43 ~~~~e~~~L~~~l~eE~   59 (135)
T 2e7s_A           43 DRDDEVKRLREDIAKEN   59 (135)
T ss_dssp             THHHHHHTHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            34444445555554444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=80.57  E-value=14  Score=28.57  Aligned_cols=13  Identities=15%  Similarity=0.360  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q 021465          173 ELDSLRQEHRRLR  185 (312)
Q Consensus       173 ELe~LrqElq~~R  185 (312)
                      +.+.|++|...-+
T Consensus        56 en~qLk~E~~~wq   68 (81)
T 2jee_A           56 ENNHLKEQQNGWQ   68 (81)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333433333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.34  E-value=0.93  Score=38.31  Aligned_cols=19  Identities=5%  Similarity=0.106  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARAR  143 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~r  143 (312)
                      ++.+|...+..++.+...+
T Consensus        13 ~r~~l~~~~~~~~~le~l~   31 (135)
T 2e7s_A           13 SLKTIASQKAAIENYNQLK   31 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	92.05
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	91.96
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	90.78
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	89.19
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	89.05
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	86.92
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	83.64

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=2.7  Score=34.59  Aligned_cols=17  Identities=6%  Similarity=-0.054  Sum_probs=7.5

Q ss_pred             hhHHHHHHHHHhhhhhH
Q 021465          101 SDSHIRVLLDKIAKMEA  117 (312)
Q Consensus       101 ~e~qiR~L~ek~~k~Ea  117 (312)
                      .+...+.+.+...+++.
T Consensus       109 ~~~~~K~~~~~~~k~~k  125 (288)
T d2efla1         109 LKQERKSNFHDGRKAQQ  125 (288)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444443

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.96  E-value=0.21  Score=37.83  Aligned_cols=20  Identities=15%  Similarity=0.150  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 021465          142 ARQELTSKIQQASEALHKAR  161 (312)
Q Consensus       142 ~rqeL~aevq~l~~EL~r~k  161 (312)
                      ...+|...+..+..++.+..
T Consensus        66 ~~~~l~~~~e~l~~~i~~l~   85 (107)
T d1fxka_          66 LTEELQEKLETLQLREKTIE   85 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.78  E-value=1.2  Score=33.47  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSLARARQELTSKIQQASEA  156 (312)
Q Consensus       125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~E  156 (312)
                      .=.++.+++.+++.+...++.|.++++....-
T Consensus         6 ~~~~~q~lq~el~~~~~q~~~le~q~~E~~~v   37 (107)
T d1fxka_           6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKA   37 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456666777777777777776655544433

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.19  E-value=3.1  Score=30.55  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 021465          203 QAMEKNLVGMAREMEKLHAEVV  224 (312)
Q Consensus       203 qaMEknL~~marEvekLrAEIa  224 (312)
                      ..+++.+..+...++.+...+.
T Consensus       154 ~~l~~~~~~~~~~~~~~~~~~~  175 (185)
T d2ap3a1         154 KAIEQNYKKLKEVSDKYTKVLN  175 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444433

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.05  E-value=2  Score=32.81  Aligned_cols=15  Identities=0%  Similarity=0.191  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 021465          125 LKKDLQQAHIEAQSL  139 (312)
Q Consensus       125 lk~EL~q~r~e~q~L  139 (312)
                      +++++..+.+.+..|
T Consensus        13 l~~~l~~l~~~i~~l   27 (133)
T d1fxkc_          13 YQSQVELIQQQMEAV   27 (133)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.92  E-value=7.2  Score=32.15  Aligned_cols=13  Identities=15%  Similarity=0.297  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHH
Q 021465          215 EMEKLHAEVVNAE  227 (312)
Q Consensus       215 EvekLrAEIanae  227 (312)
                      +.+.|+.+|..+.
T Consensus       285 ~~~~l~~ei~~Lk  297 (300)
T d1f5na1         285 ESRIMKNEIQDLQ  297 (300)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=83.64  E-value=3.2  Score=30.81  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=16.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465          119 CKAGERLKKDLQQAHIEAQSLARARQELTSKI  150 (312)
Q Consensus       119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aev  150 (312)
                      +..+-.+-.+..++..+++.|.+.++.++.++
T Consensus        27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i   58 (110)
T d1seta1          27 LEALLALDREVQELKKRLQEVQTERNQVAKRV   58 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555555555555444