Citrus Sinensis ID: 021473

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMSQRSPVFTKALVYVSNSWVSLFLSRTLA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHHHcccccccccHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHcccccEEEEcccc
Coil and Loop (DISEMBL)
mkqatfrskilppshfipktllklqpsittltfpskspnpltfktlsclesqsqsetkTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRvilslippVIAFTMVAVVIASYNSaldshllpgflpvlrasslpyqltAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVIsgtdnstdecIKDSLLRYIMAFPVALKghvicdsdvsgdlqdlldaddlaivldskhrprCIIEFISQSLQLLNLEATkqnmsqrspvFTKALVYVSNSWVSLFLSRTLA
Flexible Loop (DISEMBL)
mkqatfrskilppshfipKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVlraipdwadrvkergvkqkrtlyshekwvehrsslRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMSQRSPVFTKALVYVSNSWVSLFLSRTLA
Low Complexity Region (SEG)
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHrsslrhvrhllsslssrvilsliPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGdlqdlldaddlaivldSKHRPRCIIEFISQSLQLLNLEATKQNMSQRSPVFTKALVYVSNSWVSLFLSRTLA
Disordered region (IsUnstruct)
**************HFIPKTLLKLQPSITTLTF************L***********KTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEAT*******SPVFTKALVYVSNSWVSLFLS****
Disordered Region (DISOPRED)
********************************************************************************VKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNL*******SQRSPVFTKALVYVSNSWVSLFLSRTLA
Disordered Region (DISEMBL)
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMSQRSPVFTKALVYVSNSWVSLFLSRTLA
Disordered Region (DISPRO)
****TFRSKILPPSHFIPKTLLKLQPSITTLTF*************************TLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMSQRSPVFTKALVYVSNSWVSLFLSR***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKQATFRSKILPPSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMSQRSPVFTKALVYVSNSWVSLFLSRTLA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9M2D2	410	UPF0187 protein At3g61320	yes	no	0.865	0.658	0.644	1e-84
O80832	410	UPF0187 protein At2g45870	no	no	0.801	0.609	0.633	1e-81
Q8YSU5	307	UPF0187 protein alr2987 O	yes	no	0.378	0.384	0.316	4e-07
Q8XTY1	306	UPF0187 protein RSc3414 O	yes	no	0.480	0.490	0.240	5e-05
P72926	307	UPF0187 protein sll1024 O	N/A	no	0.346	0.351	0.288	0.0002

>sp|Q9M2D2|YU88_ARATH UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 176/273 (64%), Positives = 213/273 (78%), Gaps = 3/273 (1%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 11  SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 69

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 70  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           +++L +KHRPRC+IEFISQS+QLL L+  K+++
Sbjct: 250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 282

Arabidopsis thaliana (taxid: 3702)

>sp|O80832|YU87_ARATH UPF0187 protein At2g45870, chloroplastic OS=Arabidopsis thaliana GN=At2g45870 PE=2 SV=1

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/254 (63%), Positives = 205/254 (80%), Gaps = 4/254 (1%)

Query: 35  SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHE 91
           +++P  L FK   SC+ S  +S+   L+  LIS+L+A+P+W+D +KER ++QKR+LY+HE
Sbjct: 29  ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHE 88

Query: 92  KWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVL 151
            WV HRSSLRH+RH+ SS SSRVILSLIPPV  FT VA++IA YNSA+D   LP F PVL
Sbjct: 89  NWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVL 148

Query: 152 RASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE 211
           RAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +II+GTND A +VIS    S DE
Sbjct: 149 RASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDE 208

Query: 212 -CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQ 270
             I+D+LLRYI+AFPVALK HVI  SD++ DL+++++ DDL+++L SKHRPRC+I+FISQ
Sbjct: 209 LIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQ 268

Query: 271 SLQLLNLEATKQNM 284
           SLQLLNL++TK +M
Sbjct: 269 SLQLLNLDSTKIDM 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q8YSU5|Y2987_NOSS1 UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2987 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 21/139 (15%)

Query: 123 IAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPA-------------LALLL 169
           IAF +   VI +    +    L G L      +L YQL  P              L LLL
Sbjct: 11  IAFQLRGSVIGAIYKRVICCALFGVL-----VTLLYQLKIPVSQPILGSVIPSIVLGLLL 65

Query: 170 VFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNST--DECIKDSLLRYIMAFPVA 227
           VFRT  +Y RF +G+KAW  I+  T + A  +    +  +  D   K S+L  ++AF VA
Sbjct: 66  VFRTNTAYDRFWEGRKAWGSIVNNTRNLARQIWVSVEEVSLKDREAKISVLNLLVAFAVA 125

Query: 228 LKGHVICDSDVSGDLQDLL 246
            K H+  +  ++ +L+DL+
Sbjct: 126 TKLHLRGEP-INSELEDLI 143

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8XTY1|Y3414_RALSO UPF0187 protein RSc3414 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc3414 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 117 SLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEAS 176
           S++P ++    +   I+    A+  H LP     +  S+ P+ L   ALA+ L FR  AS
Sbjct: 19  SVLPQLLPRLFLIFCISLVAMAVHVHWLP---ITVNLSTTPFSLIGIALAVFLGFRNNAS 75

Query: 177 YSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDS 236
           Y R+ + +K W Q++          ++    +         ++ + A P AL+ H +  +
Sbjct: 76  YDRYWEARKLWGQLLNDARSMTRQALTLPRETLAAADVREFVQVLGALPHALR-HQLRRT 134

Query: 237 DVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQ 270
           D   DL   L A     V+ S++RP  ++ ++ +
Sbjct: 135 DPRDDLSARLPAPLFERVMASRYRPAALMLWLGE 168

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|P72926|Y1024_SYNY3 UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1024 PE=3 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKD--SLLRYIM 222
           L LLLVFRT  +Y RF +G+KAW  ++    + + ++       + +  +D   +L  ++
Sbjct: 68  LGLLLVFRTNTAYERFWEGRKAWGTMVNTIRNLSRIIWVSVAEPSPQAHQDKIKILHLLV 127

Query: 223 AFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQ 273
           AF VA K H +    ++ ++  LL       + D  + P  I  +IS  LQ
Sbjct: 128 AFAVATKLH-LRSQPLNEEIWALLPESGYRKLEDLNNPPLEIAFWISNYLQ 177

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
225454194	419	PREDICTED: UPF0187 protein At3g61320, ch	0.868	0.646	0.665	2e-91
255541568	417	conserved hypothetical protein [Ricinus	0.852	0.637	0.68	3e-90
6850899	406	putative protein [Arabidopsis thaliana]	0.865	0.665	0.644	6e-83
22331898	410	Bestrophin-like protein [Arabidopsis tha	0.865	0.658	0.644	6e-83
297817446	410	hypothetical protein ARALYDRAFT_907660 [	0.865	0.658	0.644	1e-82
224127656	348	predicted protein [Populus trichocarpa]	0.714	0.640	0.748	1e-81
110741398	354	hypothetical protein [Arabidopsis thalia	0.714	0.629	0.714	2e-81
297824643	411	hypothetical protein ARALYDRAFT_483727 [	0.858	0.652	0.615	4e-80
15225904	410	Bestrophin-like protein [Arabidopsis tha	0.801	0.609	0.633	7e-80
297745270	339	unnamed protein product [Vitis vinifera]	0.653	0.601	0.745	6e-77

>gi|225454194|ref|XP_002273844.1| PREDICTED: UPF0187 protein At3g61320, chloroplastic [Vitis vinifera]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/275 (66%), Positives = 220/275 (80%), Gaps = 4/275 (1%)

Query: 13  PSHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSE---TKTLTLISVLRAI 69
           P++  P + LK  P+   L  PSK P  L+F+  S   + S      T+ LTLIS+LR +
Sbjct: 11  PTNLAPYSSLKTIPNFHFLPLPSK-PTKLSFRVFSSRSADSPPPPSSTQNLTLISILRTV 69

Query: 70  PDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVA 129
           PDWAD +KERG++QKR+LY+HE WVEHRSS RHVRHLLSS SSRVILSLIPPVIAFT VA
Sbjct: 70  PDWADAIKERGMQQKRSLYNHETWVEHRSSRRHVRHLLSSFSSRVILSLIPPVIAFTSVA 129

Query: 130 VVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQ 189
           V++ASYNSA+  H LP F P+LRASSLPYQLTAPALALLLVFRTEASYSRF +G+KAWT+
Sbjct: 130 VIVASYNSAVTFHWLPEFFPLLRASSLPYQLTAPALALLLVFRTEASYSRFEEGRKAWTK 189

Query: 190 IIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDAD 249
           IIAGTNDFA  V++G ++S D  +K +LL+YIMAFPVALK HVI  SD+  DLQ+LL+ D
Sbjct: 190 IIAGTNDFARQVVAGVESSGDALLKKALLQYIMAFPVALKCHVIYGSDIRQDLQNLLEVD 249

Query: 250 DLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           DLA+VL SKHRPRCIIEFISQSLQLLNL+  K+++
Sbjct: 250 DLAVVLSSKHRPRCIIEFISQSLQLLNLDDAKRHV 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541568|ref|XP_002511848.1| conserved hypothetical protein [Ricinus communis] gi|223549028|gb|EEF50517.1| conserved hypothetical protein [Ricinus communis]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/275 (68%), Positives = 228/275 (82%), Gaps = 9/275 (3%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPN----PLTFKTLSCLESQSQSETKTLTLISVLRAI 69
           S+F PK LL L  +    TFPSK PN     L+ KTL      +  +T TLTLIS+LRAI
Sbjct: 20  SNFTPKILLTLHLT----TFPSK-PNRKKSNLSLKTLCSKPPPNPHKTLTLTLISLLRAI 74

Query: 70  PDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVA 129
           PDW+DR+KERG++QKRTLY+H KWVEHRSSLRH+RHLLSSL SRVILSLIPPVIAFT VA
Sbjct: 75  PDWSDRIKERGMQQKRTLYNHNKWVEHRSSLRHLRHLLSSLQSRVILSLIPPVIAFTSVA 134

Query: 130 VVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQ 189
           V+IASYNSA++ H  PGF PVLRASSLPYQLTAPALALLLVFRTEASYSR+ +G+KAWT+
Sbjct: 135 VIIASYNSAVEMHFFPGFFPVLRASSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWTK 194

Query: 190 IIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDAD 249
           +I+G NDFA  VI+  DNS D  +K++LL+Y++AFPVALK HVI  SD++ DL++LL+ D
Sbjct: 195 VISGVNDFARQVIATVDNSKDAVLKNALLQYVIAFPVALKCHVIYGSDINRDLRNLLEVD 254

Query: 250 DLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           DLA++L+S+HRPRCIIEFISQSLQLLNLE +K+++
Sbjct: 255 DLAMLLNSRHRPRCIIEFISQSLQLLNLEESKRHL 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6850899|emb|CAB71062.1| putative protein [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/273 (64%), Positives = 213/273 (78%), Gaps = 3/273 (1%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 7   SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 65

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 66  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 125

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 126 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 185

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 186 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 245

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           +++L +KHRPRC+IEFISQS+QLL L+  K+++
Sbjct: 246 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331898|ref|NP_191691.2| Bestrophin-like protein [Arabidopsis thaliana] gi|20141056|sp|Q9M2D2.2|YU88_ARATH RecName: Full=UPF0187 protein At3g61320, chloroplastic; Flags: Precursor gi|16604549|gb|AAL24280.1| AT3g61320/T20K12_220 [Arabidopsis thaliana] gi|23296291|gb|AAN12915.1| At3g61320/T20K12_220 [Arabidopsis thaliana] gi|332646666|gb|AEE80187.1| Bestrophin-like protein [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/273 (64%), Positives = 213/273 (78%), Gaps = 3/273 (1%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 11  SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 69

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 70  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           +++L +KHRPRC+IEFISQS+QLL L+  K+++
Sbjct: 250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 282

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817446|ref|XP_002876606.1| hypothetical protein ARALYDRAFT_907660 [Arabidopsis lyrata subsp. lyrata] gi|297322444|gb|EFH52865.1| hypothetical protein ARALYDRAFT_907660 [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/273 (64%), Positives = 213/273 (78%), Gaps = 3/273 (1%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLES-QSQSETKTLTLISVLRAIPDW 72
           S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct: 11  SNFAHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESGDSGHETLTEKLILLLRAVPDW 69

Query: 73  ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
           AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV  FT VAVVI
Sbjct: 70  ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
           ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct: 130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
           GTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ DL++L++ADDL
Sbjct: 190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           +++L +KHRPRC+IEFISQS+QLL L+  K+++
Sbjct: 250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 282

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127656|ref|XP_002320128.1| predicted protein [Populus trichocarpa] gi|222860901|gb|EEE98443.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/223 (74%), Positives = 195/223 (87%)

Query: 62  LISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPP 121
           + S+LRAIPDWADRVKERG+++KR+LY+HEKWVEHRSS RHVRHLLSSLSSRV+LSL+PP
Sbjct: 1   ITSLLRAIPDWADRVKERGMRKKRSLYNHEKWVEHRSSFRHVRHLLSSLSSRVVLSLVPP 60

Query: 122 VIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFV 181
           VIAFT VAVV+ASYNSA++ H LPGF PVLR SSLPYQLTAPALALLLVFRTEASYSRF 
Sbjct: 61  VIAFTSVAVVVASYNSAVEMHFLPGFFPVLRTSSLPYQLTAPALALLLVFRTEASYSRFE 120

Query: 182 DGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGD 241
           DGK AWT++I+GTNDFA  VISG D S++  +K  LLRYIMAFP+ALK HV   S++  D
Sbjct: 121 DGKTAWTKVISGTNDFARQVISGVDGSSNSALKSELLRYIMAFPIALKCHVTYGSNIGQD 180

Query: 242 LQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           LQ+LL+A DLAIVL S+HRPRCIIEFISQ LQLLNL+ + +N+
Sbjct: 181 LQNLLEAGDLAIVLKSRHRPRCIIEFISQCLQLLNLDESMRNL 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110741398|dbj|BAF02248.1| hypothetical protein [Arabidopsis thaliana]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/224 (71%), Positives = 190/224 (84%), Gaps = 1/224 (0%)

Query: 62  LISVLRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPP 121
           LI +LRA+PDWAD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPP
Sbjct: 3   LIHLLRAVPDWADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPP 62

Query: 122 VIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFV 181
           V  FT VAVVIASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ 
Sbjct: 63  VFFFTSVAVVIASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYE 122

Query: 182 DGKKAWTQIIAGTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSG 240
           +G+KAW  IIAGTND A  VI   D+S DE  IKD LLRYI AFPVALK HVI  SD++ 
Sbjct: 123 EGRKAWVGIIAGTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIAR 182

Query: 241 DLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           DL++L++ADDL+++L +KHRPRC+IEFISQS+QLL L+  K+++
Sbjct: 183 DLRNLIEADDLSLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824643|ref|XP_002880204.1| hypothetical protein ARALYDRAFT_483727 [Arabidopsis lyrata subsp. lyrata] gi|297326043|gb|EFH56463.1| hypothetical protein ARALYDRAFT_483727 [Arabidopsis lyrata subsp. lyrata]

 Score =  304 bits (778), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 170/276 (61%), Positives = 216/276 (78%), Gaps = 8/276 (2%)

Query: 14  SHFIPKTLLKLQPSITTLTFPSKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIP 70
           S+F  ++ LK  P + +    +++P  L FK   SCL S S+S+   L+  LIS+L+A+P
Sbjct: 11  SNFTNRSFLK--PRLCS-GISARAPKSLHFKFNPSCLSSGSKSDDSPLSEKLISLLKAVP 67

Query: 71  DWADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAV 130
           +W+D +KER ++QKR+LY+HE WV HRSSLRH+RH+ SS SSRVILSLIPPV  FT VA 
Sbjct: 68  NWSDGIKERRMEQKRSLYTHENWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAF 127

Query: 131 VIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQI 190
           +IA YNSA+D   LP F PVLRAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +I
Sbjct: 128 LIAGYNSAVDLDWLPDFFPVLRASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKI 187

Query: 191 IAGTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALK-GHVICDSDVSGDLQDLLDA 248
           I+GTND A +VIS    S DE  I+D+LLRYI+AFPVALK  HVI  SD++ DLQ++++A
Sbjct: 188 ISGTNDLARLVISSVHGSGDELVIRDALLRYIVAFPVALKVCHVIYGSDIATDLQNVIEA 247

Query: 249 DDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
           DDL+++L SKHRPRC+I+FISQSLQLLNL++TK +M
Sbjct: 248 DDLSLILQSKHRPRCVIQFISQSLQLLNLDSTKIDM 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225904|ref|NP_182111.1| Bestrophin-like protein [Arabidopsis thaliana] gi|20140947|sp|O80832.1|YU87_ARATH RecName: Full=UPF0187 protein At2g45870, chloroplastic; Flags: Precursor gi|3386607|gb|AAC28537.1| hypothetical protein [Arabidopsis thaliana] gi|18491251|gb|AAL69450.1| At2g45870/F4I18.15 [Arabidopsis thaliana] gi|330255518|gb|AEC10612.1| Bestrophin-like protein [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 161/254 (63%), Positives = 205/254 (80%), Gaps = 4/254 (1%)

Query: 35  SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHE 91
           +++P  L FK   SC+ S  +S+   L+  LIS+L+A+P+W+D +KER ++QKR+LY+HE
Sbjct: 29  ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHE 88

Query: 92  KWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVL 151
            WV HRSSLRH+RH+ SS SSRVILSLIPPV  FT VA++IA YNSA+D   LP F PVL
Sbjct: 89  NWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVL 148

Query: 152 RASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE 211
           RAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +II+GTND A +VIS    S DE
Sbjct: 149 RASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDE 208

Query: 212 -CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQ 270
             I+D+LLRYI+AFPVALK HVI  SD++ DL+++++ DDL+++L SKHRPRC+I+FISQ
Sbjct: 209 LIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQ 268

Query: 271 SLQLLNLEATKQNM 284
           SLQLLNL++TK +M
Sbjct: 269 SLQLLNLDSTKIDM 282

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745270|emb|CBI40350.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 178/204 (87%)

Query: 81  VKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALD 140
           ++QKR+LY+HE WVEHRSS RHVRHLLSS SSRVILSLIPPVIAFT VAV++ASYNSA+ 
Sbjct: 1   MQQKRSLYNHETWVEHRSSRRHVRHLLSSFSSRVILSLIPPVIAFTSVAVIVASYNSAVT 60

Query: 141 SHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATM 200
            H LP F P+LRASSLPYQLTAPALALLLVFRTEASYSRF +G+KAWT+IIAGTNDFA  
Sbjct: 61  FHWLPEFFPLLRASSLPYQLTAPALALLLVFRTEASYSRFEEGRKAWTKIIAGTNDFARQ 120

Query: 201 VISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR 260
           V++G ++S D  +K +LL+YIMAFPVALK HVI  SD+  DLQ+LL+ DDLA+VL SKHR
Sbjct: 121 VVAGVESSGDALLKKALLQYIMAFPVALKCHVIYGSDIRQDLQNLLEVDDLAVVLSSKHR 180

Query: 261 PRCIIEFISQSLQLLNLEATKQNM 284
           PRCIIEFISQSLQLLNL+  K+++
Sbjct: 181 PRCIIEFISQSLQLLNLDDAKRHV 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2098881	410	AT3G61320 "AT3G61320" [Arabido	0.865	0.658	0.534	1.8e-64
TAIR|locus:2050740	410	AT2G45870 "AT2G45870" [Arabido	0.801	0.609	0.535	6e-64

TAIR|locus:2098881 AT3G61320 "AT3G61320" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 146/273 (53%), Positives = 176/273 (64%)

Query:    14 SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
             S+F  ++LL+ +  I +  F  KS N    +  S  ES  S  ET T  LI +LRA+PDW
Sbjct:    11 SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 69

Query:    73 ADRVKERGVKQKRTLYSHEKWVEHXXXXXXXXXXXXXXXXXXXXXXXPPVIAFTMVAVVI 132
             AD +KERG++QKR+LY+HEKWVEH                       PPV  FT VAVVI
Sbjct:    70 ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129

Query:   133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
             ASYNSA+    LPG  P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW  IIA
Sbjct:   130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189

Query:   193 GTNDFATMVISGTDNSTDECI-KDSLLRYIMAFPVALKGHVICDSDVSGXXXXXXXXXXX 251
             GTND A  VI   D+S DE I KD LLRYI AFPVALK HVI  SD++            
Sbjct:   190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249

Query:   252 XXXXXSKHRPRCIIEFISQSLQLLNLEATKQNM 284
                  +KHRPRC+IEFISQS+QLL L+  K+++
Sbjct:   250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 282

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2050740 AT2G45870 "AT2G45870" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 136/254 (53%), Positives = 170/254 (66%)

Query:    35 SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHE 91
             +++P  L FK   SC+ S  +S+   L+  LIS+L+A+P+W+D +KER ++QKR+LY+HE
Sbjct:    29 ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHE 88

Query:    92 KWVEHXXXXXXXXXXXXXXXXXXXXXXXPPVIAFTMVAVVIASYNSALDSHLLPGFLPVL 151
              WV H                       PPV  FT VA++IA YNSA+D   LP F PVL
Sbjct:    89 NWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVL 148

Query:   152 RASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE 211
             RAS LPYQLTAPALALLLVFRTEASYSRF  G+KAW +II+GTND A +VIS    S DE
Sbjct:   149 RASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDE 208

Query:   212 CI-KDSLLRYIMAFPVALKGHVICDSDVSGXXXXXXXXXXXXXXXXSKHRPRCIIEFISQ 270
              I +D+LLRYI+AFPVALK HVI  SD++                 SKHRPRC+I+FISQ
Sbjct:   209 LIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQ 268

Query:   271 SLQLLNLEATKQNM 284
             SLQLLNL++TK +M
Sbjct:   269 SLQLLNLDSTKIDM 282


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      312       273    0.0010  114 3  11 22  0.45    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  194 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.08u 0.11s 20.19t   Elapsed:  00:00:01
  Total cpu time:  20.08u 0.11s 20.19t   Elapsed:  00:00:01
  Start:  Mon May 20 20:23:59 2013   End:  Mon May 20 20:24:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2D2	YU88_ARATH	No assigned EC number	0.6446	0.8653	0.6585	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
pfam01062	284	pfam01062, Bestrophin, Bestrophin, RFP-TM, chlorid	2e-26
COG3781	306	COG3781, COG3781, Predicted membrane protein [Func	6e-15

>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel

 Score =  104 bits (263), Expect = 2e-26
 Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 11/173 (6%)

Query: 101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQL 160
            +   LL      ++ S+ P ++ F +++ ++ +         +   L        P+ L
Sbjct: 7   PNFFRLLFRWRGSILKSIWPELLVFLLLSALVTAIY-------IFELLAKYCLPIAPFTL 59

Query: 161 TAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRY 220
              AL+  L FR  A+Y R+ + +K W  ++  +   A  V +      +   +  LLR 
Sbjct: 60  IGLALSFFLGFRNNAAYDRWWEARKLWGALVNWSRSLARQVSTLIPGDDE---RRRLLRR 116

Query: 221 IMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQ 273
            +A+  AL+   +     + DL+ LL  ++   +L S + P  ++   + SL 
Sbjct: 117 TIAYAHALRAL-LRGISPAVDLEHLLSEEEEEKLLQSSNPPYALLIVWAASLA 168

Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members. Length = 284

>gnl|CDD|226304 COG3781, COG3781, Predicted membrane protein [Function unknown]

 Score = 73.6 bits (181), Expect = 6e-15
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 114 VILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRT 173
           V+  ++P ++   + ++V+    +A+     P  +P       P+ +   ALA+ L FR 
Sbjct: 20  VLPKILPRLLLCFLFSLVV----TAVLPWYTPLSIPFTLT---PFSIPGIALAIFLGFRN 72

Query: 174 EASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVI 233
            A+Y R+ + +K W Q++    + A  + +    + D       LR ++AF  AL+   +
Sbjct: 73  NAAYDRYWEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQ-L 131

Query: 234 CDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQ 273
                + DL  LL   D   VL S + P  I  ++ + LQ
Sbjct: 132 RKQPQNEDLAALLPTSDYEKVLASNNPPLEIALWMGEWLQ 171

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
COG3781	306	Predicted membrane protein [Function unknown]	100.0
PF01062	293	Bestrophin: Bestrophin, RFP-TM, chloride channel;	100.0
KOG3547	450	consensus Bestrophin (Best vitelliform macular dys	95.92
PF14023	209	DUF4239: Protein of unknown function (DUF4239)	91.97

>COG3781 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.3e-43  Score=326.87  Aligned_cols=187  Identities=23%  Similarity=0.345  Sum_probs=171.5

Q ss_pred             hhHHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHhcccccccCCCcccccccCCchhhhHHHHHHHHHHhccchhhhhh
Q 021473          101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRF  180 (312)
Q Consensus       101 R~~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFRtNtAYdRw  180 (312)
                      .||+.+++.++|+|+++|.|.++.++++|++|.+++..    +.+.   .+.+..+||++.|++||++||||||+|||||
T Consensus         7 ~hw~r~~f~~rGSVl~~i~~rll~~~~fS~~v~~~~~w----~~~~---~i~~~~tpf~i~giaLai~L~FRnNaaYdR~   79 (306)
T COG3781           7 QHWLRLIFVWRGSVLPKILPRLLLCFLFSLVVTAVLPW----YTPL---SIPFTLTPFSIPGIALAIFLGFRNNAAYDRY   79 (306)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh----hccc---cceeccCcchhHHHHHHHHHhhccchHHHHH
Confidence            56899999999999999999999999999999988762    1221   2445668999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhhcCCHHHHHHHhcCCCh
Q 021473          181 VDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR  260 (312)
Q Consensus       181 WEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~ALK~hLR~~~d~~~eL~~lL~~eele~l~~~~n~  260 (312)
                      |||||+||++||.+||++|++++.++++-|.+++++++++++||++|+|.|||++ +..+|+..+|+.+.++.++...|+
T Consensus        80 wEaRKlWG~lvn~~Rnl~R~i~t~v~e~~d~a~~~~~l~llvAFahalr~~LR~q-p~~~~l~a~l~~~~~~kv~a~~np  158 (306)
T COG3781          80 WEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQLRKQ-PQNEDLAALLPTSDYEKVLASNNP  158 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHhcCHHHHHHHHhccCC
Confidence            9999999999999999999999999877788999999999999999999999975 678999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc----cCChHHHHHHhcccccccce
Q 021473          261 PRCIIEFISQSLQLL----NLEATKQNMSQRSPVFTKAL  295 (312)
Q Consensus       261 P~~il~~ls~~L~~l----~Ld~~~~~~Ld~~l~~~~~~  295 (312)
                      |+.++..||+.+++.    ++|+++...||++++++++.
T Consensus       159 p~ei~~wmGe~l~~q~r~g~l~~~~~~sl~~~L~~~s~v  197 (306)
T COG3781         159 PLEIALWMGEWLQQQRRNGQLDAIQFTSLDRRLNSISAV  197 (306)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence            999999999999875    79999999999999998763

>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE)

Probab=100.00  E-value=5.8e-36  Score=280.40  Aligned_cols=190  Identities=26%  Similarity=0.363  Sum_probs=163.0

Q ss_pred             HHhhhccchhHHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHhcccccccCCCcccccccCCchhhhHHHHHHHHHHhc
Q 021473           93 WVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFR  172 (312)
Q Consensus        93 W~~HRs~~R~~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFR  172 (312)
                      +..||++ +.|.++++.++|+|+++++++++++++++++|++++....       ...+..+..+++++|++|||+||||
T Consensus         6 ~~~~~~~-~~~~~~l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~l~g~~l~~lL~Fr   77 (293)
T PF01062_consen    6 NQDVRTS-RSWWRLLFRWRGSVLKRIWPPLLVFLALAAAVALLYIFEP-------ICWLSLPSSPFSLLGIALSFLLVFR   77 (293)
T ss_pred             ccccCCc-ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccccccccchhHHHHHHHHHHHHH
Confidence            3457777 6677888899999999999999999999999999874221       1135567789999999999999999


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhhcC---CHH
Q 021473          173 TEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLL---DAD  249 (312)
Q Consensus       173 tNtAYdRwWEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~ALK~hLR~~~d~~~eL~~lL---~~e  249 (312)
                      ||+||+|||||||+||+|+|.+||+++++.+++++   +..+++++++++||++++|+|||++++ .+++++++   .++
T Consensus        78 ~n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~---~~~~~~l~r~~ia~~~~~~~~lR~~~~-~~~~~~ll~~g~~~  153 (293)
T PF01062_consen   78 TNTAYDRWWEARKLWGNLVNWSRNLARQICAFVPD---DDERRRLLRRLIAFAVALKAHLRGEST-SEELEDLLEAGLTE  153 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhhhccchH
Confidence            99999999999999999999999999999999963   223889999999999999999998653 44577776   666


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHhcc----cCChHHHHHHhcccccccc
Q 021473          250 DLAIVLDSKHRPRCIIEFISQSLQLL----NLEATKQNMSQRSPVFTKA  294 (312)
Q Consensus       250 ele~l~~~~n~P~~il~~ls~~L~~l----~Ld~~~~~~Ld~~l~~~~~  294 (312)
                      |.+.+.++.|+|+.++..+++.++++    .+|+..+.+|+++++.+..
T Consensus       154 ~~~~l~~~~~~p~~i~~~~~~~l~~~~~~g~~~~~~~~~l~~~l~~l~~  202 (293)
T PF01062_consen  154 EERRLESADNPPNWILIQWSQRLREARREGLIDSFQLAQLDNELNALRD  202 (293)
T ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            66688889999999999999999876    4999999999999988764

It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.

>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]

Probab=95.92  E-value=0.061  Score=54.75  Aligned_cols=189  Identities=11%  Similarity=0.086  Sum_probs=108.1

Q ss_pred             ccchhHHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHhccc-ccccCCCcccccccCCchhhhHHHHHHHHHHhccchh
Q 021473           98 SSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSAL-DSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEAS  176 (312)
Q Consensus        98 s~~R~~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~-~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFRtNtA  176 (312)
                      +....+..+++.|||+|.+.|+..+++..+.=.+|.+++.+. .... ...+..+..----. .--+-|.++|||=.+.-
T Consensus        12 ~~~~~f~kll~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~q-q~~Fe~~~~~~d~~-~~~iPLtFmLGFfVt~V   89 (450)
T KOG3547|consen   12 SYSFTFLKLLLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQ-QETFEKFVMYCDSR-LDFIPLTFMLGFFVTIV   89 (450)
T ss_pred             hccHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcc-cccccchHhhhhhHHHH
Confidence            444557788999999999999999887766655665555432 1000 00000000000000 01125677888888889


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHHH-HHHH-----HHHhcccCCCCCchhh-hhcCC
Q 021473          177 YSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTD--ECIKDSLLRYIM-AFPV-----ALKGHVICDSDVSGDL-QDLLD  247 (312)
Q Consensus       177 YdRwWEARKlWG~IVn~SRnLaR~~~~~i~~~~d--~~~~~~l~r~~i-AF~~-----ALK~hLR~~~d~~~eL-~~lL~  247 (312)
                      .+|||+-=..-|    -.+|++..+.+++++.++  ...|+.++|+++ +-+-     ++|-.-|-. ...... .++|.
T Consensus        90 v~RW~~~f~nig----~id~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkRFP-t~d~lv~AG~mt  164 (450)
T KOG3547|consen   90 VDRWWKQFRNIG----WIDNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKRFP-TLDHLVEAGLMT  164 (450)
T ss_pred             HHHHHHHHhccC----chHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHhcCCc
Confidence            999998765544    456777788888864221  133555665543 1111     234444432 222222 68999


Q ss_pred             HHHHHHHhc---CCC-----hHHHHHHHHHHHHhcccC-ChHHHHHHhccccccc
Q 021473          248 ADDLAIVLD---SKH-----RPRCIIEFISQSLQLLNL-EATKQNMSQRSPVFTK  293 (312)
Q Consensus       248 ~eele~l~~---~~n-----~P~~il~~ls~~L~~l~L-d~~~~~~Ld~~l~~~~  293 (312)
                      ++|++.+.+   ..|     +=+.+.+.+.+.-++..| ++.....+-+.+++|.
T Consensus       165 ~~E~~~~~~~~~~~~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~~~~~~~~ei~~fR  219 (450)
T KOG3547|consen  165 EEELDILENIVDSKYMKYWVPINWAFSLLRKARKEGRIESDYLYNSLLGEIKKFR  219 (450)
T ss_pred             HHHHHHHHhcccccccceeecHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHH
Confidence            999998843   334     235777777777777776 3445556655555543

>PF14023 DUF4239: Protein of unknown function (DUF4239)

Probab=91.97  E-value=2.2  Score=38.31  Aligned_cols=68  Identities=19%  Similarity=0.315  Sum_probs=53.7

Q ss_pred             hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Q 021473          158 YQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALK  229 (312)
Q Consensus       158 ~sLlG~ALsLLLvFRtNtAYdRwWEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~ALK  229 (312)
                      ++++|+..|++|+|=-+.+|+|+-++++.=-.=.+..+++.|.+..+.++|    .++++-..+.+|..++-
T Consensus         2 ~~~vg~l~al~laf~~~~~~~~~~~a~~~v~~EA~al~~l~~~~~~lp~~~----~~~~~r~~l~~Y~~~vv   69 (209)
T PF14023_consen    2 FGVVGVLFALLLAFTISSAWSRYDNARQAVNQEANALGTLYRLLASLPEPP----DRDEIRALLRAYTRAVV   69 (209)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc----hhHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999988874122    24445555555655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 52/278 (18%), Positives = 90/278 (32%), Gaps = 99/278 (35%)

Query: 10  ILPPSHFIPKTLLKL----QPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISV 65
           + PPS  IP  LL L          +   +K          S +E Q +  T +      
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK------LHKYSLVEKQPKESTIS------ 427

Query: 66  LRAIPDWADRVKERGVKQKRTLYSHEKWVEHRSSLR------------------HV-RHL 106
              IP     +K + ++ +  L  H   V+H +  +                  H+  HL
Sbjct: 428 ---IPSIYLELKVK-LENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 107 LS-SLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPV-LRASSLPYQLTAPA 164
            +     R+ L        F MV      +   LD      FL   +R  S  +  +   
Sbjct: 482 KNIEHPERMTL--------FRMV------F---LDFR----FLEQKIRHDSTAWNASGSI 520

Query: 165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAF 224
           L  L   +    Y  ++                        DN       + L+  I+ F
Sbjct: 521 LNTLQQLKF---YKPYI-----------------------CDNDPK---YERLVNAILDF 551

Query: 225 PVALKGHVICD--SDVSGDLQDLLDADDLAIVLDSKHR 260
              ++ ++IC   +D+   L+  L A+D AI  ++ H+
Sbjct: 552 LPKIEENLICSKYTDL---LRIALMAEDEAIFEEA-HK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00