Citrus Sinensis ID: 021491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSAFKFLL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHcccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEEcccEEEEEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccEEEEEcccccccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccEEcccccccHHHHHHHHHHccccccccccccccccccEEEEEccccccEEEEEEEcccccccEEEEEEEHHcccEEEEEEEEcccccEEEEEEEEEEEcccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mkdmewpaclDEYEKLVIRMntprvvidnavcptatLVKVDSARRHGILLEAVQVLTDLNLLIKKAyissdgrffMDVFHVtdlngnkltdESVISYIEQSLETIhygrsnsfngltaleltgtdrvGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYvkdcnsgspiedsqqIDRIEARLRNVLkgdndirsAKMTVSMAVTHTERRLHQMMFadrdyermpvlrhstdypvvtvqnwadRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCyqfdsnyccIYSAFKFLL
Flexible Loop (DISEMBL)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRnvlkgdndirsakmtvSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSAFKFLL
Low Complexity Region (SEG)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSAFKFLL
Disordered region (IsUnstruct)
*****WPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNS************IEARLRNVLKG***I***KMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSAFKFL*
Disordered Region (DISOPRED)
******P***DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI**************************************DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIY**FKFLL
Disordered Region (DISEMBL)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSAFKFLL
Disordered Region (DISPRO)
**DMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMP****STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSAFKFLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSAFKFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
A6U5G1	949	[Protein-PII] uridylyltra	yes	no	0.263	0.086	0.390	2e-08
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.456	0.151	0.276	3e-08
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.154	0.051	0.4	5e-08
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.286	0.093	0.340	7e-08
P56884	949	[Protein-PII] uridylyltra	yes	no	0.273	0.089	0.379	8e-08
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.491	0.161	0.285	1e-07
A6WV84	934	[Protein-PII] uridylyltra	yes	no	0.286	0.095	0.333	1e-06
Q2N784	919	[Protein-PII] uridylyltra	yes	no	0.141	0.047	0.35	1e-06
Q8G312	934	[Protein-PII] uridylyltra	yes	no	0.254	0.084	0.35	2e-06
C0RGK0	934	[Protein-PII] uridylyltra	yes	no	0.254	0.084	0.35	2e-06

>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=glnD PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%)

Query: 22  TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
           TP V I NA+    T+++V+   R G+L E   VL+DL+L I  A+I++ G   +D F+V
Sbjct: 830 TPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889

Query: 82  TDLNGNKLTDESVISYIEQSLETIHYG 108
           TDL G+K+T E+    I   L+ +  G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Sinorhizobium medicae (strain WSM419) (taxid: 366394)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARL 184
           D  GL S++   +A    ++++AK+ T +   A  I+      G  IE  ++I R+   +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794

Query: 185 RNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPV-LRHSTDYPVVTVQNWA 243
           R+VL GD  +  A                      R   R+P   RH T  P V V N A
Sbjct: 795 RDVLTGDLPLEKA--------------------LRRQPPRLPERTRHLTVPPRVIVDNQA 834

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
            ++++V+ +  +DR   L+ V   LTD+   +  A ++T GER
Sbjct: 835 SKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGER 877

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV+IDN    T T+++V+   R G+L +  + LT+L L I  A IS+ G   +DVF+V 
Sbjct: 845 PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVK 904

Query: 83  DLNGNKLTDESVISYIEQSL 102
           D+ G K+T E+ ++ I + L
Sbjct: 905 DVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 54/91 (59%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           P V+I N++    T+++V+   R G+L E   VL+DL+L I+ A I++ G   +D F+V 
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885

Query: 83  DLNGNKLTDESVISYIEQSLETIHYGRSNSF 113
           DL G K+++E+  +YI   L+ +  G  +  
Sbjct: 886 DLVGQKISNENRRAYITARLKAVMAGEEDEM 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain 1021) GN=glnD PE=3 SV=1

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%)

Query: 22  TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
           TP V I N +    T+++V+   R G+L E   VL+DL+L I  A+I++ G   +D F+V
Sbjct: 830 TPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889

Query: 82  TDLNGNKLTDESVISYIEQSLETIHYG 108
           TDL G+K+T E+    I   L+ +  G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 22/175 (12%)

Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIED 173
           G+T L +   D  GL S++   LA    S+V+A++ T  +G      +V+D   G   E+
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQD-GEGCSFEE 812

Query: 174 SQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTH-TERRLHQMMFADRDYERMPVLRHST 232
             Q+ R+   +   L G  DIR     +  A  H T RR+  +         +P      
Sbjct: 813 PHQLGRLNHLVEQALSGRLDIRKG---IEDASHHSTSRRMRAI--------HVP------ 855

Query: 233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
             P V + N A   ++V+ V  +DR  LL DV   L+     +  A I T G RA
Sbjct: 856 --PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRA 908

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 54/90 (60%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV I+N +    T+++V+   R G+L E   +++DL+L I  A+I++ G   +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DLNGNKLTDESVISYIEQSLETIHYGRSNS 112
           DL G+K+++ +    I + L  +  G + S
Sbjct: 894 DLVGHKISNATRQGNIRRKLLGVLSGENGS 923

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis (strain HTCC2594) GN=glnD PE=3 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 48/80 (60%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV+ DN      T+++V++  R  +L    + L +  ++++ A+I++ G    D F+VT
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884

Query: 83  DLNGNKLTDESVISYIEQSL 102
           DL G K+TDES +  I Q+L
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain 1330) GN=glnD PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 51/80 (63%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV I+N +    T+++V+   R G+L E   +++DL+L I  A+I++ G   +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DLNGNKLTDESVISYIEQSL 102
           DL G+K+++ +    I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=glnD PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 51/80 (63%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV I+N +    T+++V+   R G+L E   +++DL+L I  A+I++ G   +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DLNGNKLTDESVISYIEQSL 102
           DL G+K+++ +    I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
255537131	442	amino acid binding protein, putative [Ri	0.893	0.628	0.898	1e-150
224074729	442	predicted protein [Populus trichocarpa]	0.890	0.626	0.874	1e-146
225426651	444	PREDICTED: uncharacterized protein LOC10	0.916	0.641	0.860	1e-144
297742666	440	unnamed protein product [Vitis vinifera]	0.916	0.647	0.860	1e-144
224124920	442	predicted protein [Populus trichocarpa]	0.897	0.631	0.867	1e-143
356540171	441	PREDICTED: Protein-PII uridylyltransfera	0.887	0.625	0.821	1e-139
356497179	441	PREDICTED: uncharacterized protein LOC10	0.887	0.625	0.811	1e-136
449528978	450	PREDICTED: uncharacterized LOC101205369	0.919	0.635	0.836	1e-134
449460443	449	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.919	0.636	0.836	1e-134
449459664	448	PREDICTED: uncharacterized protein LOC10	0.897	0.622	0.795	1e-132

>gi|255537131|ref|XP_002509632.1| amino acid binding protein, putative [Ricinus communis] gi|223549531|gb|EEF51019.1| amino acid binding protein, putative [Ricinus communis]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/286 (89%), Positives = 269/286 (94%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEW A LDEYEKLVIRM TPRVVIDN VCPTAT+VKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 1   MEWSAYLDEYEKLVIRMTTPRVVIDNGVCPTATVVKVDSARKHGILLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTD+NGNKLTDESVI+YIEQSL TIHYGR++ FNGLTALELTG
Sbjct: 61  KKAYISSDGRWFMDVFHVTDINGNKLTDESVINYIEQSLGTIHYGRTHDFNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDRVGLLSEVFAVLADLQC VVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQ IDRIEAR
Sbjct: 121 TDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQHIDRIEAR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK +VSMAVTHTERRLHQMMFADRDYER P+LR S D PVVTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRDYERKPILRFSADSPVVTVQNWV 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
           +R YSVVNVQCKDR KLLFDVVCTLTDMEYVVFHATINTAG++AYL
Sbjct: 241 ERGYSVVNVQCKDRMKLLFDVVCTLTDMEYVVFHATINTAGDKAYL 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074729|ref|XP_002304443.1| predicted protein [Populus trichocarpa] gi|222841875|gb|EEE79422.1| predicted protein [Populus trichocarpa]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/286 (87%), Positives = 268/286 (93%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEW ACLDEYEKLVIRM TPRVVIDNAVCP AT+VKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 1   MEWSACLDEYEKLVIRMTTPRVVIDNAVCPKATVVKVDSARKHGILLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTD+SVI+YIEQSL TIHYGR    NGLTALELTG
Sbjct: 61  KKAYISSDGRWFMDVFHVTDLNGNKLTDKSVINYIEQSLVTIHYGRKTGSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDRVGLLSEVFAVLADLQC+VV+AKVWTHNGRIA+L++VKDCNSGSPIED+QQIDRIEAR
Sbjct: 121 TDRVGLLSEVFAVLADLQCNVVDAKVWTHNGRIAALMFVKDCNSGSPIEDTQQIDRIEAR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK  VSMAVTHTERRLHQMMFADRDYER P+L+ S D PVVTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKTMVSMAVTHTERRLHQMMFADRDYERNPILQPSGDSPVVTVQNWV 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
           +R YSVVNVQC+DRTKLLFDVVCTLTDMEY+VFHATI T+G+RAYL
Sbjct: 241 ERGYSVVNVQCRDRTKLLFDVVCTLTDMEYIVFHATIKTSGDRAYL 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426651|ref|XP_002281251.1| PREDICTED: uncharacterized protein LOC100242743 [Vitis vinifera] gi|147794108|emb|CAN62364.1| hypothetical protein VITISV_031924 [Vitis vinifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/286 (86%), Positives = 270/286 (94%), Gaps = 1/286 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP CLDEYEKLVIRMNTPRVV+DNAVC T TLVKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 5   MEWP-CLDEYEKLVIRMNTPRVVVDNAVCATTTLVKVDSARKHGILLEAVQVLTDLNLSI 63

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTDESVI+YIEQSL  IH+ RSNSFNGLTALELTG
Sbjct: 64  KKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLGCIHHVRSNSFNGLTALELTG 123

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDR+GLLSEVFAVLADL+C+VVE+K+WTHNGRIASLIYVKDC+SG+PIEDSQ+IDRIE R
Sbjct: 124 TDRLGLLSEVFAVLADLECNVVESKMWTHNGRIASLIYVKDCDSGNPIEDSQKIDRIEGR 183

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK +VS+AVTHTERRLHQMMFADRDYER P++R +++ P VTVQNW 
Sbjct: 184 LRNVLKGDNDIRSAKTSVSLAVTHTERRLHQMMFADRDYEREPIIRSASESPAVTVQNWV 243

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
           +R YSVVNVQCKDR KLLFDVVCTLTDM+YVVFHATINTAG++AYL
Sbjct: 244 ERGYSVVNVQCKDRRKLLFDVVCTLTDMQYVVFHATINTAGDKAYL 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742666|emb|CBI34815.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/286 (86%), Positives = 270/286 (94%), Gaps = 1/286 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP CLDEYEKLVIRMNTPRVV+DNAVC T TLVKVDSAR+HGILLEAVQVLTDLNL I
Sbjct: 1   MEWP-CLDEYEKLVIRMNTPRVVVDNAVCATTTLVKVDSARKHGILLEAVQVLTDLNLSI 59

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTDESVI+YIEQSL  IH+ RSNSFNGLTALELTG
Sbjct: 60  KKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLGCIHHVRSNSFNGLTALELTG 119

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDR+GLLSEVFAVLADL+C+VVE+K+WTHNGRIASLIYVKDC+SG+PIEDSQ+IDRIE R
Sbjct: 120 TDRLGLLSEVFAVLADLECNVVESKMWTHNGRIASLIYVKDCDSGNPIEDSQKIDRIEGR 179

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK +VS+AVTHTERRLHQMMFADRDYER P++R +++ P VTVQNW 
Sbjct: 180 LRNVLKGDNDIRSAKTSVSLAVTHTERRLHQMMFADRDYEREPIIRSASESPAVTVQNWV 239

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
           +R YSVVNVQCKDR KLLFDVVCTLTDM+YVVFHATINTAG++AYL
Sbjct: 240 ERGYSVVNVQCKDRRKLLFDVVCTLTDMQYVVFHATINTAGDKAYL 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124920|ref|XP_002329846.1| predicted protein [Populus trichocarpa] gi|222871083|gb|EEF08214.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/286 (86%), Positives = 264/286 (92%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEW AC DEYEKLVIRM TPRVVIDNAV   AT+VKVDSAR+H ILLEAVQVLTDLNL I
Sbjct: 1   MEWSACSDEYEKLVIRMTTPRVVIDNAVSSKATVVKVDSARKHRILLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYISSDGR+FMDVFHVTDLNGNKLTDESVI+YIEQSL TIH G++   NGLTALELTG
Sbjct: 61  KKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLGTIHPGKTTGSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDR+GLLSEVFAVLADLQCSVV+AKVWTHNGRIASL+YVKDCNSGSPIED+Q IDRIEAR
Sbjct: 121 TDRIGLLSEVFAVLADLQCSVVDAKVWTHNGRIASLMYVKDCNSGSPIEDTQHIDRIEAR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK  VSMAVTHTERRLHQ+MFADRDYER P+L+ S D PVVTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKTMVSMAVTHTERRLHQVMFADRDYERKPILQPSGDSPVVTVQNWV 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
           +R YSVVNVQCKDRTKLLFDVVCTLTDMEY+VFHATINTAG+RAYL
Sbjct: 241 ERGYSVVNVQCKDRTKLLFDVVCTLTDMEYIVFHATINTAGDRAYL 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540171|ref|XP_003538563.1| PREDICTED: Protein-PII uridylyltransferase [Glycine max]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/286 (82%), Positives = 262/286 (91%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWPA  DEYEKL+IRM+TPRVVIDN+VC +ATLVKVDSARRHGILL+AVQVLTDLNL I
Sbjct: 1   MEWPASTDEYEKLIIRMSTPRVVIDNSVCSSATLVKVDSARRHGILLDAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYIS+DG++FMDVFHVTD NGNK+ DESV+ YIEQSL  IHYGR+N  NGLTALELTG
Sbjct: 61  KKAYISADGKWFMDVFHVTDQNGNKIMDESVLKYIEQSLGNIHYGRTNRSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           +DRVGLLSEVFAVLADLQC V +AKVWTHNGRIASLIYVKDC+SGS IEDSQ+I++IE R
Sbjct: 121 SDRVGLLSEVFAVLADLQCDVADAKVWTHNGRIASLIYVKDCSSGSAIEDSQKINKIELR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAKM+VSMAV HTERRLHQ+MF DRDYER P+L+ ++D P+VTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKMSVSMAVMHTERRLHQLMFVDRDYERTPILKLTSDNPLVTVQNWE 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
            R YSVVNVQCKDRTKLLFD+VC LTDMEYVVFHATINT+G+RAYL
Sbjct: 241 GRGYSVVNVQCKDRTKLLFDIVCNLTDMEYVVFHATINTSGDRAYL 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497179|ref|XP_003517440.1| PREDICTED: uncharacterized protein LOC100780903 [Glycine max]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/286 (81%), Positives = 257/286 (89%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWPAC DEYEKL+IRMNTPRVVIDN+V  +ATLVKVDSARRHGILL+AV+VL DLNL I
Sbjct: 1   MEWPACTDEYEKLIIRMNTPRVVIDNSVFSSATLVKVDSARRHGILLDAVEVLADLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
           KKAYIS+DG++FMDVFHVTD NGNK+ DESV+ YIEQSL  IHYGR+N  NGLTALELTG
Sbjct: 61  KKAYISADGKWFMDVFHVTDQNGNKIIDESVLKYIEQSLGNIHYGRTNLSNGLTALELTG 120

Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           TDRVGLLSEVFAVLADLQC VVE+KVWTHNGRIASLIYVKD +SGS IEDSQ+I++IE R
Sbjct: 121 TDRVGLLSEVFAVLADLQCDVVESKVWTHNGRIASLIYVKDSSSGSAIEDSQKINKIELR 180

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
           LRNVLKGDNDIRSAK++ SMAV HTERRLHQ+MF DRDYER P+L+ ++D   VTVQNW 
Sbjct: 181 LRNVLKGDNDIRSAKISFSMAVMHTERRLHQLMFVDRDYERAPILKLTSDNASVTVQNWE 240

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
            R YSVVNVQCKDRTKLLFD+VC LTDMEYVVFHATINT G+RAYL
Sbjct: 241 GRGYSVVNVQCKDRTKLLFDIVCNLTDMEYVVFHATINTDGDRAYL 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528978|ref|XP_004171478.1| PREDICTED: uncharacterized LOC101205369 [Cucumis sativus]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/288 (83%), Positives = 255/288 (88%), Gaps = 2/288 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP+ LDEYEKLVIRMNTPRVVIDN  C TATLVKVDSARR G LLEAVQVLTDLNL I
Sbjct: 1   MEWPSRLDEYEKLVIRMNTPRVVIDNGACSTATLVKVDSARRFGNLLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLT-ALELT 122
           KKAY+SSDGR+FMDVFHVTD NG KLTDESVISY+EQSL T HY R+  FNG T ALELT
Sbjct: 61  KKAYVSSDGRWFMDVFHVTDQNGEKLTDESVISYLEQSLGTTHYRRNEEFNGTTTALELT 120

Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
           GTDRVGLLSEVFAVLADLQC VVEAKVWTHNGRIASLIYVKDCNSGSPIED Q+ID I A
Sbjct: 121 GTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIEDRQKIDTIVA 180

Query: 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTD-YPVVTVQN 241
           RLR+VLKGDNDIRSAK +VSMAVTHTERRLHQMMFADRDYER P+L+ + D  P VTVQN
Sbjct: 181 RLRSVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRDYERKPILKLNADNSPAVTVQN 240

Query: 242 WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
            A+R YSVV VQCKDRTKLLFDV+ TLTDM+YVVFHA INTA ERAYL
Sbjct: 241 CAERGYSVVCVQCKDRTKLLFDVIFTLTDMQYVVFHANINTAQERAYL 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460443|ref|XP_004147955.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101205369 [Cucumis sativus]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/288 (83%), Positives = 255/288 (88%), Gaps = 2/288 (0%)

Query: 4   MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
           MEWP+ LDEYEKLVIRMNTPRVVIDN  C TATLVKVDSARR G LLEAVQVLTDLNL I
Sbjct: 1   MEWPSRLDEYEKLVIRMNTPRVVIDNGACSTATLVKVDSARRFGNLLEAVQVLTDLNLSI 60

Query: 64  KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLT-ALELT 122
           KKAY+SSDGR+FMDVFHVTD NG KLTDESVISY+EQSL T HY R+  FNG T ALELT
Sbjct: 61  KKAYVSSDGRWFMDVFHVTDQNGEKLTDESVISYLEQSLGTTHYRRNEEFNGTTTALELT 120

Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
           GTDRVGLLSEVFAVLADLQC VVEAKVWTHNGRIASLIYVKDCNSGSPIED Q+ID I A
Sbjct: 121 GTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIEDRQKIDTIVA 180

Query: 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTD-YPVVTVQN 241
           RLR+VLKGDNDIRSAK +VSMAVTHTERRLHQMMFADRDYER P+L+ + D  P VTVQN
Sbjct: 181 RLRSVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRDYERKPILKLNADNSPAVTVQN 240

Query: 242 WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
            A+R YSVV VQCKDRTKLLFDV+ TLTDM+YVVFHA INTA ERAYL
Sbjct: 241 CAERGYSVVCVQCKDRTKLLFDVIFTLTDMQYVVFHANINTAQERAYL 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459664|ref|XP_004147566.1| PREDICTED: uncharacterized protein LOC101209959 [Cucumis sativus] gi|449520363|ref|XP_004167203.1| PREDICTED: uncharacterized LOC101209959 [Cucumis sativus]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/289 (79%), Positives = 253/289 (87%)

Query: 1   MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLN 60
           M ++EWP  LDEY KL+ RMNTPRVVIDNAVC TATLVKVDSARRHGILLEAVQVLTDLN
Sbjct: 5   MVEIEWPGSLDEYSKLINRMNTPRVVIDNAVCETATLVKVDSARRHGILLEAVQVLTDLN 64

Query: 61  LLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALE 120
           L I+KAYISSDG +FMDVFHVTDL GNKLTDE VISY+EQSL TIH G+  + N LTALE
Sbjct: 65  LSIQKAYISSDGIWFMDVFHVTDLEGNKLTDEGVISYLEQSLATIHCGKPATSNDLTALE 124

Query: 121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRI 180
           LTGTDRVGLLSEVFAVLA+LQC VVEAKVWTHNGRIASLIYVKDCNSGSPI++S++ID I
Sbjct: 125 LTGTDRVGLLSEVFAVLAELQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIKESERIDTI 184

Query: 181 EARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQ 240
             RLRNVLKGD+DI  AK +VSM VTHTERRLHQMMFADRDYER PV +H+ D PVVTVQ
Sbjct: 185 VGRLRNVLKGDDDILYAKTSVSMTVTHTERRLHQMMFADRDYERKPVQQHTEDSPVVTVQ 244

Query: 241 NWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
           N  +R YSVVN+QCKDR KLLFDV+CT+TDM+YVVFH TI T+  RAYL
Sbjct: 245 NLVERGYSVVNIQCKDRMKLLFDVICTMTDMDYVVFHGTITTSRHRAYL 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.900	0.634	0.726	2.1e-107
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.909	0.630	0.674	1.3e-98
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.893	0.610	0.558	3.4e-77
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.890	0.639	0.522	1.8e-69
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.684	0.467	0.543	3.3e-57
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.668	0.416	0.434	6.9e-57
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.742	0.509	0.502	7.8e-56
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.659	0.429	0.438	3.4e-38
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.800	0.605	0.224	2.8e-08
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.257	0.265	0.296	7.2e-05

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 205/282 (72%), Positives = 241/282 (85%)

Query:    10 LDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69
             LDEYEKLVIRMNTPRVVIDN VC +AT+VKVDS+RR+GILLEAVQ+LTDLNL IKKAYIS
Sbjct:     7 LDEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYIS 66

Query:    70 SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGL 129
             SDG + MDVFHVTDLNGNKL D+SV+ YIEQS+ET++YG +   NGLTALELTGTDR+GL
Sbjct:    67 SDGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSIETVYYGENIEVNGLTALELTGTDRIGL 126

Query:   130 LSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189
             LSE+FAVL+DL C VV+AK+WTHNGR+AS+IY+KDC SG+PI DS +I +IE RL+NVL 
Sbjct:   127 LSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVLN 186

Query:   190 GDNDIRSAKMT-VSM-AVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSY 247
             GDND+ SA  T V++ ++ H ERRLHQ+MF DRDYER       +   VVTVQNWA+R Y
Sbjct:   187 GDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHERSPMVVVTVQNWAERGY 246

Query:   248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
             SVVNV C+DRTKLLFDVVCTLTDMEY VFHATINTA ++A+L
Sbjct:   247 SVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHL 288

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 195/289 (67%), Positives = 233/289 (80%)

Query:     4 MEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLI 63
             ME   C +EYEKLV+RMN PRVVIDN VCP +T+VK+DSAR  GILLE+VQ+LTD+NL I
Sbjct:     1 MELSDCSNEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWI 60

Query:    64 KKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTG 123
             KKAYISSDG++ MDVFHV+DLNG+KLTDE++I YIE+S+ET HY ++  + GLTALELTG
Sbjct:    61 KKAYISSDGKWNMDVFHVSDLNGDKLTDENLIRYIEKSIETSHYCKTEGYTGLTALELTG 120

Query:   124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE-DSQQIDRIEA 182
             TDRVGLLSEVFAVLADL+C VVEAK WTHNGRIAS+IYVKD NSG+PI+ DS ++ R+E 
Sbjct:   121 TDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVEG 180

Query:   183 RLRNVLKGDNDIRSAKMT-VSMAV-THTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQ 240
             +LRN+LK D+  ++   T VS    TH ERRLHQ MF DRDYE+   +  S   P+V+VQ
Sbjct:   181 QLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEKKFDIEKS---PIVSVQ 237

Query:   241 NWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL 289
             N   R YSVVN+QCKDR KLLFDVVCTLTDM Y+VFHA I T GE A+L
Sbjct:   238 NLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFL 286

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 162/290 (55%), Positives = 202/290 (69%)

Query:    11 DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70
             +EYEKL+ RMN PRVVIDN  C  AT+++VDSA  +GILLE VQ+LTDLNL I KAYISS
Sbjct:    13 NEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISS 72

Query:    71 DGRFFMDVFHVTDLNGNKLTDESVISYIEQSL-ETIHYGRSNSFNGL------TALELTG 123
             DG +FMDVF+VTD +GNK+TDE V+ YI++SL     +  S    G+      T +ELTG
Sbjct:    73 DGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTVIELTG 132

Query:   124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
              DR GLLSE+ AVL  L+CSV+ A++WTHN R A+++ V D  +G  I D +++ RI+  
Sbjct:   133 CDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRIKNL 192

Query:   184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPV-----LRHSTDYPVVT 238
             LRNVLKG N  R AK  VS    HT+RRLHQMMF DRDYE   V     ++     P V 
Sbjct:   193 LRNVLKGSNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQRPDVC 252

Query:   239 VQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY 288
             V NW D+ YSVV V+CKDR KLLFD VCTLTDM+YVVFH +++T G  A+
Sbjct:   253 VDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAF 302

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 150/287 (52%), Positives = 198/287 (68%)

Query:    11 DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70
             DEY KL+ RMN PRVVIDN     AT+++VDS  +HG LLE VQVLTD+NL+IKKAYISS
Sbjct:     4 DEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISS 63

Query:    71 DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET-----IHYGRSN----SFNGLTALEL 121
             DG +FMDVF V D +GNK+ D  V+ YI++ +E+     I   RS+      +  T++EL
Sbjct:    64 DGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIEL 123

Query:   122 TGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE 181
              GTDR GLLSEV AVL DL C+VV A++WTHN R A++I+V D ++ S I D  ++  I+
Sbjct:   124 AGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTIK 183

Query:   182 ARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQN 241
               L NV++ ++  R+AK   S + TH ERRLHQ+MF DRDYE +   R S   P VT+ N
Sbjct:   184 ELLCNVVRTNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYEGVKRARTSASRPSVTLMN 243

Query:   242 WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY 288
               ++ Y+VV ++ KDR KL+FDVVCTLTDM+YVVFH  ++T    AY
Sbjct:   244 -IEKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAY 289

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 124/228 (54%), Positives = 159/228 (69%)

Query:    11 DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70
             DE  K + R+N PRVVIDN VC   T++KVDSA +HGILLE VQVLT+LNL IKKAYISS
Sbjct:    13 DEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISS 72

Query:    71 DGRFFMDVFHVTDLNGNKLTDESVISYIEQSL---ETIHYGRS-NSFNGL------TALE 120
             DG +FMDVF+VTD +GNK+TDE V+ YI +SL   E+  +  S  S  G+      T +E
Sbjct:    73 DGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTIGVKQSVDYTVVE 132

Query:   121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRI 180
             LTGTDR GLLSE+ AVL DLQC+VV A++WTH  + A+++ V D  + S I D +++ +I
Sbjct:   133 LTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLSKI 192

Query:   181 EARLRNVLKGDND---IRSAKMTVSMAV--THTERRLHQMMFADRDYE 223
                L  VL G +     R  K TVS A+  THT+R+LHQ+MFADRDY+
Sbjct:   193 RKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYD 240

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 99/228 (43%), Positives = 139/228 (60%)

Query:     1 MKDMEWPACLDEYEKLVIRMNTP--RVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTD 58
             M+ + WP    +++ L  R+  P  RV IDN      T+VKV+S  + G+LLE VQ+LTD
Sbjct:     1 MQKVCWPYFDPDFDNLGERIYGPPCRVYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTD 60

Query:    59 LNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET-------IHYGRSN 111
             +NL+I K+YISSDG +FMDVFHV D +GNKLTD+SVI++I+ ++ T       I    +N
Sbjct:    61 MNLIITKSYISSDGGWFMDVFHVKDEHGNKLTDKSVINHIKHAIGTSRRESDFIKASEAN 120

Query:   112 SFNGL----------TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY 161
             + N L          TA+E+TGTDR GL SE+FA  ADL C+V+EA  W+HN R+A + Y
Sbjct:   121 N-NSLEPQLADHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLACIAY 179

Query:   162 VKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTE 209
             V D N+ +PI+D  ++  IE  L  V++   D  S    V      T+
Sbjct:   180 VSDDNTHTPIDDPSRLASIEDHLSTVIRATADPASNSTHVGHKENETD 227

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 123/245 (50%), Positives = 156/245 (63%)

Query:     1 MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLN 60
             M  + WP    EYE L  R+N P V IDN  C   TLVKVDS  + GILLE VQVLTDL+
Sbjct:     1 MAKVYWPYFDPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLD 60

Query:    61 LLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI-HYGRS-NSFNGL-- 116
             L I KAYISSDG +FMDVFHVTD  GNK+TD   I YIE+ L    H   S N++ G   
Sbjct:    61 LTITKAYISSDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRV 120

Query:   117 --------TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
                     T++E+   DR GLLSEV AVLADL  +VV A+ WTHN RIA ++YV D  + 
Sbjct:   121 GVHSLGDHTSIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATS 180

Query:   169 SPIEDSQQIDRIEARLRNVLKG--DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMP 226
               ++D +++  +E +L NVL+G  + D + A+ ++S+  TH +RRLHQM FADRDYE + 
Sbjct:   181 RAVDDPERLSSMEEQLNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVT 240

Query:   227 VLRHS 231
              L  S
Sbjct:   241 KLDDS 245

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 97/221 (43%), Positives = 135/221 (61%)

Query:     1 MKDMEWPACLD-EYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDL 59
             M ++ +   +D E E LV R+N PRV +DN   P  TL+KVDSA ++GILL+ VQVL DL
Sbjct:     1 MMEIAYQPRIDSEIESLVERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADL 60

Query:    60 NLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG------RSNSF 113
             +L+I K YISSDG +FMDVFHVTD  GNKLTD S+I YI+Q++ +   G      +SN  
Sbjct:    61 DLVISKCYISSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLK 120

Query:   114 NGL---------TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164
               +         TA E+TG +R GLLSE+ AVL+D+ C V  A  WTH+ R A +IY++D
Sbjct:   121 REVQQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLED 180

Query:   165 CNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAV 205
               +G PI D  +  +++  L  V++  + +      V   V
Sbjct:   181 GFNGGPIIDPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVV 221

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 60/267 (22%), Positives = 129/267 (48%)

Query:    20 MNTPRVVID-NAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDV 78
             +N   V+I+   +    T+V V+     G+     +++ +  L I +A  S+DGR+   V
Sbjct:     4 LNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWCYIV 63

Query:    79 FHVT-DLNGNKLTDESV----ISYIEQSLETIHYGRSNSFN---GLTALELTGTDRVGLL 130
             F VT D++  K+  +S+    +S     L + ++   ++ +    L  L+    DR GLL
Sbjct:    64 FWVTPDISSPKIDWDSLKNRLLSACPSCLGSFYFCLQSNVSKPPSLYLLKFFCRDRKGLL 123

Query:   131 SEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189
              +V  VL +L+ ++   KV T  +GR+  + ++ D      +   Q+  +    L  VL 
Sbjct:   124 HDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMD--LLHTKQRQTKTCDHLTAVL- 180

Query:   190 GDNDIRSAKMTVSMAVTHTERRLHQM--MFADRDY--ERMPVLRHSTDYPVVTVQNWADR 245
             G++ + S ++ ++     + +R   +  + AD  +  +   +   S++  V+TV N    
Sbjct:   181 GEHGV-SCELELAGPELESVQRFSSLPPLAADELFGPDGFDISGSSSNKAVLTVDNQLSP 239

Query:   246 SYSVVNVQCKDRTKLLFDVVCTLTDME 272
             +++++ ++C D+  L +D++ T  D +
Sbjct:   240 AHTLLQIRCVDQKGLFYDILRTSKDCD 266

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
 Identities = 24/81 (29%), Positives = 43/81 (53%)

Query:    23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
             P V+ID    P AT+V++    R G L++ ++ L DL L + K  +S++G      F +T
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    83 DLN-GNKLTDESVISYIEQSL 102
               + G K+ D  ++  I  ++
Sbjct:   155 KRDTGRKVEDPDLLEQIRLTI 175

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	1e-38
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	2e-35
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	2e-20
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	6e-20
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-13
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-10
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-10
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	6e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-06
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-06
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	3e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	6e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	7e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	7e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-05
pfam01842	66	pfam01842, ACT, ACT domain	2e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	3e-05
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	9e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	2e-04
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	4e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	0.001
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	0.002
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.003
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	0.003
pfam13291	77	pfam13291, ACT_4, ACT domain	0.004
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	0.004

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (330), Expect = 1e-38
 Identities = 55/72 (76%), Positives = 62/72 (86%)

Query: 35  ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESV 94
            TLVKVDSAR+ GILLEAVQVLTDL+L I KAYISSDG +FMDVFHVTD  GNKLTD+S+
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 95  ISYIEQSLETIH 106
           I+YIE+SL T  
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  122 bits (309), Expect = 2e-35
 Identities = 50/74 (67%), Positives = 62/74 (83%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           TA+ELTGTDR GLLSEVFAVLADL C+VVEA+ WTHNGR+A +IYV+D  +G+PI+D  +
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 177 IDRIEARLRNVLKG 190
           +  IE RL NVL+G
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 83.2 bits (206), Expect = 2e-20
 Identities = 33/42 (78%), Positives = 38/42 (90%)

Query: 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAY 288
           YSVV VQC+DR KLLFDVVCTLTDM+YVVFHATI+T G+ A+
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAH 42

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 81.7 bits (203), Expect = 6e-20
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           T LELT  DR GLL++V  VLA+L  ++  AK+ T   R   + YV D   G P+ D ++
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPER 58

Query: 177 IDRIEARLRNVL 188
            + + A L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           T +E+   DR GLL+++  VLADL  ++ +A++ T   R   + YV D + G P+ D ++
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPER 58

Query: 177 IDRIEARLRNVL 188
           I R+E  L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 36  TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI 95
           T+V+V +  R G+L +  +VL DL L I  A IS+ G   +DVF+VTD +G  L D   I
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 96  SYIEQSLET 104
           + +E++LE 
Sbjct: 60  ARLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 33/80 (41%), Positives = 52/80 (65%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV IDN      T+++V+   R G+L +  + L+DLNL I  A+I++ G   +DVF+VT
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Query: 83  DLNGNKLTDESVISYIEQSL 102
           DL G K+T+E+  + I ++L
Sbjct: 891 DLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 22/177 (12%)

Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSP 170
              G+T + +   D  GL S +    A    ++V+A+++T  +GR     +++D   G  
Sbjct: 728 PARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRD 786

Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
            ++ +++ R+   + + L G                  E RL + + A R   +    R 
Sbjct: 787 EDEPRRLARLAKAIEDALSG------------------EVRLPEAL-AKRTKPK-KRARA 826

Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
               P VT+ N A   ++V+ V  +DR  LL+D+   L+D+   +  A I T GERA
Sbjct: 827 FHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERA 883

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 28/167 (16%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           D+ GL ++V   LA L  SV +A+V T  +G       V+D   GSP          E  
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF-GSPPAA-------ERV 728

Query: 184 LRNVLKGDNDIRSAK---MTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQ 240
            + +L+G  D+ +          A     RRL                      P VT+ 
Sbjct: 729 FQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVP----------------PRVTIL 772

Query: 241 NWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
           N A R  +++ V+  DR  LL  V  TL ++   +  A I T GE+A
Sbjct: 773 NTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKA 819

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLV 290
           +VV V   DR  LL D+   L D+   +  A I+T GERA  V
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDV 43

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query: 22  TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
            PRV I N     AT+++V +  R G+L    + L +L L I+ A I++ G    DVF+V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 82  TDLNGNKLTDE 92
           TDL G KLTDE
Sbjct: 826 TDLFGLKLTDE 836

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 34/197 (17%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI--SSDGRFFMDVFH 80
           P  +ID       T V + +  + G+  +    L  L+L +  A +  + DG    D F 
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVAL-DTFV 714

Query: 81  VTDLNGNKLTDESVISYIEQSLETIHYG----------------RSNSF----------- 113
           V DL G+    E V   + Q L  +  G                R   F           
Sbjct: 715 VQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNT 774

Query: 114 --NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI 171
                T +E+   DR GLL+ V   L +L  S+  AK+ T   +   + YV D   G  +
Sbjct: 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKL 833

Query: 172 EDSQQIDRIEARLRNVL 188
            D ++  R+   L   +
Sbjct: 834 TDEEE-QRLLEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 37/165 (22%)

Query: 67  YISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLE----------------------- 103
           + ++DGR  +D F + D  G    +   ++ + +++E                       
Sbjct: 766 FTTTDGRA-LDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRA 824

Query: 104 ---------TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG 154
                    TI    SN F   T +E+ G DR GLL ++   L+DL  ++  A + T+  
Sbjct: 825 RAFHVPPRVTIDNEASNRF---TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGE 881

Query: 155 RIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKM 199
           R   + YV D   G  I +  +   I   L   L        A  
Sbjct: 882 RAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGEAEARAAR 925

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 29/161 (18%)

Query: 59  LNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL-ETIHYG--------- 108
           L+++  + + + DG   +D F V + +G    +E   + +   L E +  G         
Sbjct: 710 LSIVDAQIFTTRDGYA-LDTFIVLEPDG-FPVEEDRRAALRGELIEALLSGKAQPPRRRR 767

Query: 109 ---RSNSF-------------NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152
              +   F             N  T LE+   DR GLL+ +  V ADL  S+  AK+ T 
Sbjct: 768 IPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827

Query: 153 NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDND 193
             R+  +  V D   G  +    +   ++  L  +L  D  
Sbjct: 828 GERVEDVFIVTDA-DGQALNAELRQSLLQRLLEALLPNDEG 867

Length = 867

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 44/160 (27%), Positives = 60/160 (37%), Gaps = 23/160 (14%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARL 184
           DR GLLS+   VLA  +  V  A V +H+G  A L +V     GSP         +   L
Sbjct: 608 DRRGLLSKAAGVLALHRLRVRSASVRSHDGV-AVLEFVVSPRFGSPP----DAALLRQDL 662

Query: 185 RNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWAD 244
           R  L GD D+ +              R       +     +PV R     P V   + A 
Sbjct: 663 RRALDGDLDVLAR----------LAAR-------EAAAAAVPV-RRPAAPPRVLWLDGAS 704

Query: 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284
              +V+ V+  DR  LL  +   L      V  A + T G
Sbjct: 705 PDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744

Length = 774

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 36  TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI 95
           T++++ +  R G+L +  +VL +L L I  A I++ G    DVF+VTD +G  L  E   
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQE 60

Query: 96  SYIEQSLET 104
           + +  +L  
Sbjct: 61  A-LRAALGE 68

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 40/196 (20%)

Query: 35  ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI-SSDGRFFMDVFHVTDLNGNKLTDES 93
            T + + +  +H      V  +  LNL I  A I +S  +F +D + V D +G  + D  
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 94  V-ISYIEQSLE------------------------------TIHYGRSNSFNGLTALELT 122
             I  I + L                               TI    +++   +T LE+ 
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTIS---NDAQRPVTVLEII 820

Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
             DR GLL+ +  +  +   S+  AK+ T   R+  + ++ D +   P+ D Q    + +
Sbjct: 821 APDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD-NQPLSDPQ----LCS 875

Query: 183 RLRNVLKGDNDIRSAK 198
           RL++ +    D R+ K
Sbjct: 876 RLQDAICEQLDARNEK 891

Length = 895

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 26/164 (15%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           DR  L + V A L+    S+V+A+++T  +G       V + + G P+E+    DR  A 
Sbjct: 693 DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD-GFPVEE----DRRAAL 747

Query: 184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWA 243
              +++    + S K           RR+               LRH    P VT+   A
Sbjct: 748 RGELIE---ALLSGKAQPP-----RRRRIP------------RKLRHFPIPPRVTILPTA 787

Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
               +V+ V+  DR  LL  +     D+   +  A I T GER 
Sbjct: 788 SNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERV 831

Length = 867

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 23/176 (13%)

Query: 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI- 171
           F G T + +   D+    +   A +  L  ++ +A++ T + +     Y+   + G PI 
Sbjct: 701 FEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIG 760

Query: 172 EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHS 231
           ++  +I++I   L   L+  +D  +    +        R+L    F  +           
Sbjct: 761 DNPARIEQIREGLTEALRNPDDYPT---IIQ---RRVPRQLKHFAFPTQ----------- 803

Query: 232 TDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
                VT+ N A R  +V+ +   DR  LL  +     + +  + +A I T GER 
Sbjct: 804 -----VTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERV 854

Length = 895

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQID 178
           L ++G DR GLL++V +VLA+   ++   +  T      + I++        ++    ++
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV-------VDGDGDLE 53

Query: 179 RIEARLR 185
           ++   L 
Sbjct: 54  KLLEALE 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
           T LE+   DR GLL+EVF  LAD   ++      T   +   +  V        + D + 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVV-------VVDEED 53

Query: 177 IDRIEARLRNVL 188
           ++     L+ +L
Sbjct: 54  LEAALEALKKLL 65

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQI 177
            LEL   DRVGLLS+V  V  +   +V  A++ T      ++ YV D N G+P+ D + I
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN-GNPV-DPKTI 60

Query: 178 DRIEARLR 185
           + +   + 
Sbjct: 61  EAVRQEIG 68

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 35  ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI--SSDGRFFMDVFHVTDLNGNKLTDE 92
            T V + +  R G+       L  L L I  A I  + DG + +D F V D +G  + + 
Sbjct: 1   GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDG-YALDTFVVLDPDGEPIGER 59

Query: 93  SVISYIEQSLE 103
             ++ I ++LE
Sbjct: 60  ERLARIREALE 70

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 28/83 (33%), Positives = 41/83 (49%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV I        T+++V +  R G+L     V  DL L +  A I++ G    DVF VT
Sbjct: 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838

Query: 83  DLNGNKLTDESVISYIEQSLETI 105
           D +G  L  E   S +++ LE +
Sbjct: 839 DADGQALNAELRQSLLQRLLEAL 861

Length = 867

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 45  RHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET 104
           R G+L +  +V  +  L + +A IS+ G   ++VF+VTD NGN   D   I  + Q +  
Sbjct: 11  RVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP-VDPKTIEAVRQEIGP 69

Query: 105 IH 106
             
Sbjct: 70  AC 71

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
           DR GL + +   L  L  ++++A+++T  +G       V D   G PI + +++ RI   
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREA 68

Query: 184 LRNVL 188
           L + L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 19/80 (23%), Positives = 42/80 (52%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
            +V I N      T++++ +  R G+L    ++  + +L ++ A I++ G    DVF +T
Sbjct: 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861

Query: 83  DLNGNKLTDESVISYIEQSL 102
           D +   L+D  + S ++ ++
Sbjct: 862 DADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 12/72 (16%)

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASL---IYVKDCNSGSPIEDSQ 175
           + +   DR GLL+++  V+A+ + +++     T +  +A++   + V+         D +
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR---------DLE 51

Query: 176 QIDRIEARLRNV 187
            + RI  +LR +
Sbjct: 52  HLARIMRKLRQI 63

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
           +V+ +   DR  LL DV   L ++   +  A I T GERA
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERA 40

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 23  PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
           PRV+  +   P AT+++V +A R G+L    + L    + ++ A +++ G   +DVF+VT
Sbjct: 695 PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVT 754

Query: 83  DLNGNKLTDE 92
              G  L D 
Sbjct: 755 GAAGGPLADA 764

Length = 774

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 34/177 (19%)

Query: 2   KDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNL 61
           K + W A L     L+       V I N      T + +    +  + L+ V  +    L
Sbjct: 649 KQIAWHALL-----LLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKL 703

Query: 62  LIKKAYI--SSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL-ETIHYGRSNSFNGL-- 116
            I  A I  S DG    D F VT+LNG KL +      +EQ+L + ++  +    N    
Sbjct: 704 SIHDAQIITSQDGYVL-DSFIVTELNG-KLLEFDRRRQLEQALTKALNTNKLKKLNLEEN 761

Query: 117 ----------------------TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151
                                 T +EL   DR GLL++V  V ++L  +++ AK+ T
Sbjct: 762 HKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT 818

Length = 854

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 14/72 (19%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASL-IYVKDCNSGSPIEDSQ 175
             LE+   DR GLL+++  V+++ + +++     + +  IA++ + ++       ++D +
Sbjct: 5   ADLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLE-------VKDLE 57

Query: 176 QIDRIEARLRNV 187
            + R+  +LR +
Sbjct: 58  HLARLIRKLRKI 69

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 37  LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTD---LNGNKLTD 91
           L+K+  + R G+L +  +VL +L L I++  +S+  DGR  +D+F +TD   L   K   
Sbjct: 2   LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGR-VLDLFFITDARELLHTKKRR 60

Query: 92  ESVISYIEQSL 102
           E    Y+   L
Sbjct: 61  EETYDYLRAVL 71

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.97
PRK05007	884	PII uridylyl-transferase; Provisional	99.97
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.94
PRK03059	856	PII uridylyl-transferase; Provisional	99.94
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.94
PRK05092	931	PII uridylyl-transferase; Provisional	99.94
PRK03381	774	PII uridylyl-transferase; Provisional	99.94
PRK05092	931	PII uridylyl-transferase; Provisional	99.94
PRK03381	774	PII uridylyl-transferase; Provisional	99.94
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.94
PRK03059	856	PII uridylyl-transferase; Provisional	99.93
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.82
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.81
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.78
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.76
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.76
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.71
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.68
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.66
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.62
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.62
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.59
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.59
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.59
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.56
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.52
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.45
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.45
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.39
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.38
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.37
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.35
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.33
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.28
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.18
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.96
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.86
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.86
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.65
COG4747	142	ACT domain-containing protein [General function pr	98.63
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.62
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.58
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.57
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.55
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.51
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.49
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.41
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.28
PRK00194	90	hypothetical protein; Validated	98.19
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.18
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.16
PRK00194	90	hypothetical protein; Validated	98.14
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.13
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.12
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.1
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.82
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.81
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.81
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.8
COG4747	142	ACT domain-containing protein [General function pr	97.79
COG3830	90	ACT domain-containing protein [Signal transduction	97.73
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.71
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.7
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.63
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.62
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.58
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.53
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.52
COG3830	90	ACT domain-containing protein [Signal transduction	97.5
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.47
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.47
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.38
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.36
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.36
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.27
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.26
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.25
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.22
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.19
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.18
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.17
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.13
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.12
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.07
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.06
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.03
PRK07431	587	aspartate kinase; Provisional	97.03
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.01
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.01
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.95
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.93
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.9
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.86
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.84
PRK07431	587	aspartate kinase; Provisional	96.81
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.81
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.8
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.79
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.72
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.71
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.69
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.67
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.67
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.65
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.65
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.63
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.59
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.57
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.53
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.5
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.49
PRK08577	136	hypothetical protein; Provisional	96.43
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.43
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.37
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.34
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.34
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.3
PRK08577	136	hypothetical protein; Provisional	96.3
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.29
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.29
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.29
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.28
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.25
cd02116	60	ACT ACT domains are commonly involved in specifica	96.21
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.18
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.15
PRK04435	147	hypothetical protein; Provisional	96.13
PRK04435	147	hypothetical protein; Provisional	96.1
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.98
PRK06635	404	aspartate kinase; Reviewed	95.98
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.97
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.92
cd02116	60	ACT ACT domains are commonly involved in specifica	95.9
PRK07334	403	threonine dehydratase; Provisional	95.88
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.84
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.77
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	95.54
PRK08210	403	aspartate kinase I; Reviewed	95.51
PRK06635	404	aspartate kinase; Reviewed	95.49
PRK06291	465	aspartate kinase; Provisional	95.36
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.22
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.05
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.84
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.81
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.73
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.71
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.59
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	94.52
PRK09034	454	aspartate kinase; Reviewed	94.42
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.41
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	94.31
PRK07334	403	threonine dehydratase; Provisional	94.31
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	94.23
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.04
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.68
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.68
PLN02551	521	aspartokinase	93.64
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.62
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.6
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.58
COG1707	218	ACT domain-containing protein [General function pr	93.46
COG1707	218	ACT domain-containing protein [General function pr	93.38
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.35
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	93.31
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	93.28
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.25
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	93.09
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.95
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.94
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	92.79
PRK09181	475	aspartate kinase; Validated	92.7
PRK06291	465	aspartate kinase; Provisional	92.62
PRK11899	279	prephenate dehydratase; Provisional	92.55
PRK06382	406	threonine dehydratase; Provisional	92.32
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	92.22
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	92.17
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.93
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	91.84
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.79
PRK12483	521	threonine dehydratase; Reviewed	91.62
PRK08210	403	aspartate kinase I; Reviewed	91.51
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	91.45
PRK08818	370	prephenate dehydrogenase; Provisional	91.35
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	91.34
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.2
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.49
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	90.42
PRK09084	448	aspartate kinase III; Validated	90.42
PRK09224	504	threonine dehydratase; Reviewed	90.33
PRK09034	454	aspartate kinase; Reviewed	90.08
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	89.94
PRK06545	359	prephenate dehydrogenase; Validated	89.87
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	89.62
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.5
PRK08198	404	threonine dehydratase; Provisional	88.99
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	88.85
PRK11899	279	prephenate dehydratase; Provisional	88.73
PRK06382	406	threonine dehydratase; Provisional	88.7
PRK06349	426	homoserine dehydrogenase; Provisional	88.43
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	88.17
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	87.87
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	87.85
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.46
PRK06545	359	prephenate dehydrogenase; Validated	87.42
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	87.38
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	86.97
PRK06349	426	homoserine dehydrogenase; Provisional	86.4
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	86.38
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	86.32
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	86.02
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	85.92
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	85.68
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	85.62
PRK08818	370	prephenate dehydrogenase; Provisional	85.35
PLN02551	521	aspartokinase	84.13
PRK08526	403	threonine dehydratase; Provisional	84.1
PRK08198	404	threonine dehydratase; Provisional	83.55
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	82.93
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	82.56
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	82.14
COG2150	167	Predicted regulator of amino acid metabolism, cont	81.72
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	81.43
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	81.28
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	80.84
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	80.8
PRK09181	475	aspartate kinase; Validated	80.76
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	80.58
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	80.51
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	80.17
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	80.1

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=9.7e-31  Score=271.97  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=144.5

Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      +.+.+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|++.|+|+|.+ .+|.++. +++++.|++.|.++|.
T Consensus       672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~L~~aL~  749 (854)
T PRK01759        672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQALTKALN  749 (854)
T ss_pred             cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHHHHHHHc
Confidence            55678999999999999999999999999999999999998 6899999999999 6888885 5788999999999998


Q ss_pred             CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (311)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~  269 (311)
                      +...+.   .       .. ++.++.    +.|         ..|++|.|||+.|..+|+|+|.|+|||||||+|+++|.
T Consensus       750 ~~~~~~---~-------~~-~~~~~~----~~~---------~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~  805 (854)
T PRK01759        750 TNKLKK---L-------NL-EENHKL----QHF---------HVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFS  805 (854)
T ss_pred             CCCCcc---h-------hc-cccccc----cCC---------CCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence            754321   0       00 011110    223         68999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491          270 DMEYVVFHATINTAGERAYLVINCYQFDSNYCC  302 (311)
Q Consensus       270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~  302 (311)
                      ++|++|++|||+|.|++|+|+|||++.+|+++.
T Consensus       806 ~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~  838 (854)
T PRK01759        806 ELNLNLLNAKITTIGEKAEDFFILTNQQGQALD  838 (854)
T ss_pred             HCCCEEEEEEEcccCceEEEEEEEECCCCCcCC
Confidence            999999999999999999999999999999765

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=3.1e-30  Score=269.00  Aligned_cols=167  Identities=23%  Similarity=0.205  Sum_probs=143.6

Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      +...+.++|+|+++||||||++|+++|+.+|+||++|+|+|. +|++.|+|+|.+ .+|.++. ++++++|++.|.++|.
T Consensus       696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~L~~aL~  773 (884)
T PRK05007        696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKALEQALT  773 (884)
T ss_pred             cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHHHHHHHc
Confidence            456689999999999999999999999999999999999988 569999999999 6888874 5788999999999998


Q ss_pred             CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (311)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~  269 (311)
                      +.....   . .       .++.+..   .+++         ..|++|.|+|+.|..+|+|+|.|+|||||||+|+++|.
T Consensus       774 ~~~~~~---~-~-------~~~~~~~---~~~~---------~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~  830 (884)
T PRK05007        774 QSSPQP---P-K-------PRRLPAK---LRHF---------NVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFA  830 (884)
T ss_pred             CCCCCc---c-c-------ccccccc---cCCC---------CCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence            754321   1 1       1111110   0223         68999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491          270 DMEYVVFHATINTAGERAYLVINCYQFDSNYCC  302 (311)
Q Consensus       270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~  302 (311)
                      ++|++|++|||+|.|++|+|+|||++.+|+++.
T Consensus       831 ~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~  863 (884)
T PRK05007        831 DLGISLHGARITTIGERVEDLFILATADRRALN  863 (884)
T ss_pred             HCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC
Confidence            999999999999999999999999999998764

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.7e-28  Score=252.68  Aligned_cols=176  Identities=22%  Similarity=0.343  Sum_probs=152.1

Q ss_pred             hHHHHHHHhcC-CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCC
Q 021491           11 DEYEKLVIRMN-TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNK   88 (311)
Q Consensus        11 ~~~~~~~~~~~-~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~   88 (311)
                      .||.+++.... .|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.+
T Consensus       652 ~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~  731 (854)
T PRK01759        652 AWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKL  731 (854)
T ss_pred             HHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCC
Confidence            36777775554 5788899999999999999999999999999999999999999999998 899999999999999998


Q ss_pred             CCcH---HHHHHHHHHhhhccC-----C----------C------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeE
Q 021491           89 LTDE---SVISYIEQSLETIHY-----G----------R------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSV  144 (311)
Q Consensus        89 ~~~~---~~~~~l~~~L~~~~~-----r----------r------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI  144 (311)
                      ++++   .+.+.|+++|.+...     +          +      ++.+..+|+|+|.++|||||||+|+++|.++|++|
T Consensus       732 ~~~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i  811 (854)
T PRK01759        732 LEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL  811 (854)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence            7643   355666666765321     0          0      36778999999999999999999999999999999


Q ss_pred             EEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          145 VEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       145 ~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      +.|+|.|.|+++.|+|||++ .+|.+++++++ +.|+++|.++|
T Consensus       812 ~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        812 LNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             EEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence            99999999999999999999 78999987555 89999988765

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=7.7e-28  Score=251.13  Aligned_cols=178  Identities=21%  Similarity=0.269  Sum_probs=154.5

Q ss_pred             hHHHHHHHhc--CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCC
Q 021491           11 DEYEKLVIRM--NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGN   87 (311)
Q Consensus        11 ~~~~~~~~~~--~~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~   87 (311)
                      .||.+++.+.  ..|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++|.
T Consensus       675 ~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~  754 (884)
T PRK05007        675 AWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS  754 (884)
T ss_pred             HHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC
Confidence            4677777665  36888899988999999999999999999999999999999999999997 67899999999999998


Q ss_pred             CCCcH---HHHHHHHHHhhhccC------C----------C------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 021491           88 KLTDE---SVISYIEQSLETIHY------G----------R------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQC  142 (311)
Q Consensus        88 ~~~~~---~~~~~l~~~L~~~~~------r----------r------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~gl  142 (311)
                      +++.+   .+.+.|+++|.+...      +          +      ++.+..+|+|+|.++|||||||+|+++|.++|+
T Consensus       755 ~~~~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l  834 (884)
T PRK05007        755 PLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGI  834 (884)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCc
Confidence            87542   356777777765421      0          0      367889999999999999999999999999999


Q ss_pred             eEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          143 SVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       143 nI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      +|++|+|.|.|+++.|+|||++ .+|.+++ ++..+.|++.|.++|..
T Consensus       835 ~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        835 SLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             EEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999 6888887 67889999999988754

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3e-27  Score=246.82  Aligned_cols=180  Identities=21%  Similarity=0.361  Sum_probs=153.5

Q ss_pred             hHHHHHHHhcC---CCeEEEEecCC---CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491           11 DEYEKLVIRMN---TPRVVIDNAVC---PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD   83 (311)
Q Consensus        11 ~~~~~~~~~~~---~~~V~~~~~~~---~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~   83 (311)
                      .||.+++.+..   .|.|.+.+.++   .++++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++
T Consensus       674 ~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d  753 (895)
T PRK00275        674 AWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD  753 (895)
T ss_pred             HHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC
Confidence            47888887653   57777877665   58999999999999999999999999999999999986 7899999999999


Q ss_pred             CCCCCCCc-H----HHHHHHHHHhhhccC-------C-----C-----------CCCCCCeEEEEEEeCCcccHHHHHHH
Q 021491           84 LNGNKLTD-E----SVISYIEQSLETIHY-------G-----R-----------SNSFNGLTALELTGTDRVGLLSEVFA  135 (311)
Q Consensus        84 ~~g~~~~~-~----~~~~~l~~~L~~~~~-------r-----r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~  135 (311)
                      ++|.++.. +    .+.+.|+++|.+...       +     +           ++.+.+.|+|+|+++||||||++|++
T Consensus       754 ~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~  833 (895)
T PRK00275        754 DDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR  833 (895)
T ss_pred             CCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHH
Confidence            99887532 2    355667777765431       0     0           25667899999999999999999999


Q ss_pred             HHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          136 VLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       136 ~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      +|+.+|+||++|+|.|.|+++.|+|||++ .+|.++.+++++++|++.|.++|.+.
T Consensus       834 ~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        834 IFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             HHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999 68888887788899999999988653

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.95  E-value=1.9e-27  Score=248.47  Aligned_cols=169  Identities=29%  Similarity=0.300  Sum_probs=144.0

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE-ccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW-THNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~-T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      ...+.++|+|+++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|||++ .+|.++.+++++++|++.|.++|.+
T Consensus       664 ~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L~~  742 (850)
T TIGR01693       664 RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVLAG  742 (850)
T ss_pred             CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHHcC
Confidence            346889999999999999999999999999999999999 55899999999999 6888887777889999999999987


Q ss_pred             CCCcchhhhhhhhccccchh-hhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491          191 DNDIRSAKMTVSMAVTHTER-RLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (311)
Q Consensus       191 ~~~~~~~~~~l~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~  269 (311)
                      .....   ..+..     .+ +.++.    +++         .+|++|.|+|+.+.++|+|+|.|.|||||||+|+++|+
T Consensus       743 ~~~~~---~~~~~-----~~~~~~~~----~~~---------~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~  801 (850)
T TIGR01693       743 LAKDP---DTISA-----RRARRRRL----QHF---------AVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLE  801 (850)
T ss_pred             CCccc---ccccc-----ccCCcccc----cCC---------CCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHH
Confidence            54321   11100     00 11110    223         68999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491          270 DMEYVVFHATINTAGERAYLVINCYQFDSNYCC  302 (311)
Q Consensus       270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~  302 (311)
                      ++|++|++|+|+|.|++++|+|||++..|.+..
T Consensus       802 ~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~  834 (850)
T TIGR01693       802 ELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLT  834 (850)
T ss_pred             HCCCeEEEEEEEecCccceeEEEEECCCCCCCC
Confidence            999999999999999999999999999988754

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2e-26  Score=239.42  Aligned_cols=177  Identities=22%  Similarity=0.218  Sum_probs=149.1

Q ss_pred             hHHHHHHHhcC--CCeEEEEe-cCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCC
Q 021491           11 DEYEKLVIRMN--TPRVVIDN-AVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNG   86 (311)
Q Consensus        11 ~~~~~~~~~~~--~~~V~~~~-~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g   86 (311)
                      .||.+++.+..  .|.|.+.. .++.+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|
T Consensus       663 ~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~  742 (869)
T PRK04374        663 AWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDT  742 (869)
T ss_pred             HHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCC
Confidence            46777776643  56666655 66779999999999999999999999999999999999997 8999999999999888


Q ss_pred             CCCCc-HHHHHHHHHHhhhccC------C------C-----------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 021491           87 NKLTD-ESVISYIEQSLETIHY------G------R-----------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQC  142 (311)
Q Consensus        87 ~~~~~-~~~~~~l~~~L~~~~~------r------r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~gl  142 (311)
                      .+... .++.+.|+++|.+...      +      +           ++.+.+.|+|+|.+.||||||++|+++|+++|+
T Consensus       743 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l  822 (869)
T PRK04374        743 YADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHL  822 (869)
T ss_pred             CChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCC
Confidence            64322 3467788888876321      1      0           256678999999999999999999999999999


Q ss_pred             eEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          143 SVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       143 nI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      ||++|+|+|.|+++.|+|||++ .+|.++.++++ +.|++.|.++|.
T Consensus       823 ~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        823 RVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             eEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            9999999999999999999999 67888766555 899999988774

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.6e-26  Score=239.83  Aligned_cols=166  Identities=22%  Similarity=0.326  Sum_probs=142.1

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCC-ChHHHHHHHHHHHHHhcCC
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIE-DSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~  191 (311)
                      .+.+.|.|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.++. +++++++|++.|.++|.+.
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999999876 789999999999 6788753 4578899999999999886


Q ss_pred             CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcC
Q 021491          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM  271 (311)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~  271 (311)
                      ..+.   ..+       .++.+...   +.+         ..++.|.|+++.+..+|+|+|.|+||||||++|+.+|+++
T Consensus       781 ~~~~---~~~-------~~~~~~~~---~~~---------~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~  838 (895)
T PRK00275        781 DDYP---TII-------QRRVPRQL---KHF---------AFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF  838 (895)
T ss_pred             Cccc---hhh-------hhhhhhhc---cCC---------CCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence            5432   111       12221110   223         5789999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491          272 EYVVFHATINTAGERAYLVINCYQFDSNYCC  302 (311)
Q Consensus       272 gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~  302 (311)
                      |++|++|+|.|.|++|.|+|||++.+|++..
T Consensus       839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~  869 (895)
T PRK00275        839 DLSLQNAKIATLGERVEDVFFITDADNQPLS  869 (895)
T ss_pred             CCEEEEeEEEecCCEEEEEEEEECCCCCCCC
Confidence            9999999999999999999999999998754

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=4.2e-26  Score=236.97  Aligned_cols=164  Identities=24%  Similarity=0.210  Sum_probs=139.0

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      ...+.+.|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ +++.+   .+.+.++++.|.++|.+
T Consensus       686 ~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~~  761 (869)
T PRK04374        686 PDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLAG  761 (869)
T ss_pred             cCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHcC
Confidence            45578999999999999999999999999999999999985 799999999998 56654   35678899999999988


Q ss_pred             CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhc
Q 021491          191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD  270 (311)
Q Consensus       191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~  270 (311)
                      +..+.   . +.      .++....   .+         +..+||+|.|+|+.+..+|+|+|.|.|||||||+|+.+|++
T Consensus       762 ~~~~~---~-~~------~~~~~~~---~~---------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~  819 (869)
T PRK04374        762 DLQKV---R-PA------RRAVPRQ---LR---------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRM  819 (869)
T ss_pred             CCCcc---c-cc------cccCccc---cc---------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHH
Confidence            65322   1 10      1111110   02         33689999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEecCCeEEEEEEEEecCCCee
Q 021491          271 MEYVVFHATINTAGERAYLVINCYQFDSNYC  301 (311)
Q Consensus       271 ~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~  301 (311)
                      +|++|++|+|+|.|++|+|+|||++.+|.+.
T Consensus       820 ~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~  850 (869)
T PRK04374        820 QHLRVHDARIATFGERAEDQFQITDEHDRPL  850 (869)
T ss_pred             CCCeEEEeEEEecCCEEEEEEEEECCCCCcC
Confidence            9999999999999999999999999999864

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1e-25  Score=234.40  Aligned_cols=174  Identities=19%  Similarity=0.211  Sum_probs=146.4

Q ss_pred             hHHHHHHHhcC---CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCC
Q 021491           11 DEYEKLVIRMN---TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNG   86 (311)
Q Consensus        11 ~~~~~~~~~~~---~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g   86 (311)
                      .||.+++.+..   .|.|.+...++.+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++|
T Consensus       651 ~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~  730 (856)
T PRK03059        651 AWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEE  730 (856)
T ss_pred             HHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCC
Confidence            47888887753   5777788888889999999999999999999999999999999999986 8899999999999877


Q ss_pred             CCCCc----HHHHHHHHHHhhhccC-------C-----C-----------CCCCCCeEEEEEEeCCcccHHHHHHHHHHh
Q 021491           87 NKLTD----ESVISYIEQSLETIHY-------G-----R-----------SNSFNGLTALELTGTDRVGLLSEVFAVLAD  139 (311)
Q Consensus        87 ~~~~~----~~~~~~l~~~L~~~~~-------r-----r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~  139 (311)
                      . ..+    +++.+.|+++|.+...       +     +           ++...+.|+|+|+++||||||++|+++|+.
T Consensus       731 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~  809 (856)
T PRK03059        731 D-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAE  809 (856)
T ss_pred             C-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHH
Confidence            7 322    2466777777766321       1     0           255668999999999999999999999999


Q ss_pred             CCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          140 LQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       140 ~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      +|+||++|+|+|.||++.|+|||.+ .   +..+++++++|++.|.++|.
T Consensus       810 ~~l~I~~AkI~T~~~~v~DvF~V~~-~---~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        810 HRVSVHTAKINTLGERVEDTFLIDG-S---GLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             CCCeEEEEEEeecCCEEEEEEEEcC-C---CCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999965 2   24456888999999988763

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.5e-26  Score=230.24  Aligned_cols=165  Identities=25%  Similarity=0.312  Sum_probs=140.3

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      ...+.+.|.|+++|+|+||+.+++++...|.||++|+|+|. +|++.|+|+|.+ .+|.++. +.+...++..|.+++..
T Consensus       680 ~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~~l~s  757 (867)
T COG2844         680 PHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIEALLS  757 (867)
T ss_pred             ccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHHHHhc
Confidence            34477999999999999999999999999999999999986 799999999999 6788886 57777788888877654


Q ss_pred             CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhc
Q 021491          191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD  270 (311)
Q Consensus       191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~  270 (311)
                      ....+   .        ..+|.++..   ++|         .+||+|+|.|+.+...|+|||++.||||||++++.+|++
T Consensus       758 ~~~~~---~--------~~~r~~r~~---~~f---------~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~d  814 (867)
T COG2844         758 GKAQP---P--------RRRRIPRKL---RHF---------PIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFAD  814 (867)
T ss_pred             CCCCC---c--------cccccCccc---cee---------ccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHh
Confidence            33211   1        112221110   345         799999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEEecCCeEEEEEEEEecCCCee
Q 021491          271 MEYVVFHATINTAGERAYLVINCYQFDSNYC  301 (311)
Q Consensus       271 ~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~  301 (311)
                      +|++|++|+|+|.||+|+|+|||++..|++.
T Consensus       815 l~l~i~~AkItT~GErveD~F~vt~~~~~~l  845 (867)
T COG2844         815 LGLSLHSAKITTFGERVEDVFIVTDADGQAL  845 (867)
T ss_pred             cccceeeeeeccccccceeEEEEeccccccC
Confidence            9999999999999999999999999999876

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.9e-25  Score=234.99  Aligned_cols=171  Identities=24%  Similarity=0.412  Sum_probs=144.3

Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      +...+.+.|+|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.+..++++++.|++.|.+++.
T Consensus       727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l~  805 (931)
T PRK05092        727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALS  805 (931)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHc
Confidence            345578999999999999999999999999999999999985 789999999998 678776667889999999999987


Q ss_pred             CCCCcchhhhhhhhccccchhhh-hhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHh
Q 021491          190 GDNDIRSAKMTVSMAVTHTERRL-HQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTL  268 (311)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l  268 (311)
                      +..++.   ..+       .+|. ...  ..++|         ..+++|.|+|+.+..+|+|+|.++||||||++|+++|
T Consensus       806 ~~~~~~---~~~-------~~r~~~~~--~~~~~---------~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l  864 (931)
T PRK05092        806 GEVRLP---EAL-------AKRTKPKK--RARAF---------HVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRAL  864 (931)
T ss_pred             CCCCCc---ccc-------ccccCccc--cccCC---------CCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHH
Confidence            754432   111       1111 100  00223         6789999999999999999999999999999999999


Q ss_pred             hcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEE
Q 021491          269 TDMEYVVFHATINTAGERAYLVINCYQFDSNYCCI  303 (311)
Q Consensus       269 ~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~  303 (311)
                      +++|++|.+|+|.|.|+++.|+|||++.+|+++..
T Consensus       865 ~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~  899 (931)
T PRK05092        865 SDLNLNIASAHIATYGERAVDVFYVTDLFGLKITN  899 (931)
T ss_pred             HHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCC
Confidence            99999999999999999999999999999987643

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.4e-25  Score=229.65  Aligned_cols=161  Identities=24%  Similarity=0.255  Sum_probs=140.5

Q ss_pred             CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           21 NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        21 ~~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ..|.|.+.+.+ .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+++.+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            56788888877 89999999999999999999999999999999999999999999999999988886665678888888


Q ss_pred             HhhhccC--------------CC-------------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC
Q 021491          101 SLETIHY--------------GR-------------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN  153 (311)
Q Consensus       101 ~L~~~~~--------------rr-------------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~  153 (311)
                      +|.+...              ++             ++.+.+.++|+|.++||||||++|+++|+.+|+||++|+|.|.|
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            8876411              10             14455789999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491          154 GRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (311)
Q Consensus       154 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (311)
                      +++.|+|||++ .+|.++.++  .+.|++.|.
T Consensus       745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence            99999999999 688888753  567776653

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=8.1e-25  Score=230.22  Aligned_cols=180  Identities=22%  Similarity=0.254  Sum_probs=153.5

Q ss_pred             hHHHHHHHhcC----CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCC
Q 021491           11 DEYEKLVIRMN----TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLN   85 (311)
Q Consensus        11 ~~~~~~~~~~~----~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~   85 (311)
                      .||.+++.+..    .+.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++
T Consensus       704 ~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~  783 (931)
T PRK05092        704 ARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF  783 (931)
T ss_pred             HHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence            47888887753    3577788888889999999999999999999999999999999999997 889999999999988


Q ss_pred             CCCCCcH----HHHHHHHHHhhhccC-------C-----C-------------CCCCCCeEEEEEEeCCcccHHHHHHHH
Q 021491           86 GNKLTDE----SVISYIEQSLETIHY-------G-----R-------------SNSFNGLTALELTGTDRVGLLSEVFAV  136 (311)
Q Consensus        86 g~~~~~~----~~~~~l~~~L~~~~~-------r-----r-------------~~~~~~~t~i~V~~~DrpGLL~~I~~~  136 (311)
                      |.+..++    .+.+.|+.+|.+...       +     +             ++.+.+.|+|+|.++||||||++|+++
T Consensus       784 g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~  863 (931)
T PRK05092        784 GRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRA  863 (931)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHH
Confidence            8776554    355566666644211       0     0             245667899999999999999999999


Q ss_pred             HHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          137 LADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       137 L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      |+++|+||++|+|.|.++++.|+|+|++ .+|.++.+++.++.|++.|.++|.+.
T Consensus       864 l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        864 LSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             HHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999 68888888778899999999988663

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.2e-25  Score=229.87  Aligned_cols=166  Identities=25%  Similarity=0.238  Sum_probs=137.8

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCC
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDND  193 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  193 (311)
                      .+.+.|+|+++||||||++|+++|+.+|+||++|+|+|.+|.+.|+|+|.+ +.|.+.    .++++++.|.++|.++..
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~~~~~  671 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALDGDLD  671 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHcCCCc
Confidence            688999999999999999999999999999999999998999999999998 566643    248899999999988543


Q ss_pred             cchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCe
Q 021491          194 IRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEY  273 (311)
Q Consensus       194 ~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi  273 (311)
                      ..   ..+       .++....    .+.    ...+...|+.|.++++.+..+|+|+|.|+|||||||+|+.+|+++|+
T Consensus       672 ~~---~~~-------~~~~~~~----~~~----~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~l  733 (774)
T PRK03381        672 VL---ARL-------AAREAAA----AAV----PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGV  733 (774)
T ss_pred             hh---hhh-------hcccccc----ccc----ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCC
Confidence            21   111       0110000    000    00133688999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491          274 VVFHATINTAGERAYLVINCYQFDSNYCC  302 (311)
Q Consensus       274 ~I~~A~I~T~g~~a~D~F~v~~~~g~~~~  302 (311)
                      ||++|+|+|.|++|+|+|||++.+|+++.
T Consensus       734 nI~~AkI~T~g~~a~D~F~V~d~~g~~~~  762 (774)
T PRK03381        734 DVRWARVATLGADVVDVFYVTGAAGGPLA  762 (774)
T ss_pred             eEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence            99999999999999999999999998764

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=7e-25  Score=229.18  Aligned_cols=176  Identities=23%  Similarity=0.289  Sum_probs=151.8

Q ss_pred             hHHHHHHHhcC---CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-EcCCEEEEEEEEEeCCC
Q 021491           11 DEYEKLVIRMN---TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNG   86 (311)
Q Consensus        11 ~~~~~~~~~~~---~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~~g~~~d~f~v~~~~g   86 (311)
                      .||.+++.+..   .|.|.+.+....++++|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++.+|
T Consensus       641 ~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g  720 (850)
T TIGR01693       641 AWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFG  720 (850)
T ss_pred             HHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCC
Confidence            47888887753   578888876668999999999999999999999999999999999999 58999999999999999


Q ss_pred             CCCCcHH----HHHHHHHHhhhccC------------CC-------------CCCCCCeEEEEEEeCCcccHHHHHHHHH
Q 021491           87 NKLTDES----VISYIEQSLETIHY------------GR-------------SNSFNGLTALELTGTDRVGLLSEVFAVL  137 (311)
Q Consensus        87 ~~~~~~~----~~~~l~~~L~~~~~------------rr-------------~~~~~~~t~i~V~~~DrpGLL~~I~~~L  137 (311)
                      .++.+++    +.+.|.++|.+...            ++             ++.+..+|+|+|.+.||||||++|+++|
T Consensus       721 ~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l  800 (850)
T TIGR01693       721 SPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTL  800 (850)
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHH
Confidence            8876643    55666667765210            00             3667789999999999999999999999


Q ss_pred             HhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          138 ADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       138 ~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      +++|+||++|+|.|.|+++.|+|+|++ ..|.|+++ +..+.|++.|.++|
T Consensus       801 ~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       801 EELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999999998 67889876 77889999988765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.3e-25  Score=220.01  Aligned_cols=177  Identities=24%  Similarity=0.282  Sum_probs=145.4

Q ss_pred             hHHHHHHHhc--CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCC
Q 021491           11 DEYEKLVIRM--NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGN   87 (311)
Q Consensus        11 ~~~~~~~~~~--~~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~   87 (311)
                      .||++++.++  ++|.|.+...+..+.++|+|++||+|.||+.+|+++...|+||++|+|+| .+|+++|+|+|++++|.
T Consensus       658 awH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~  737 (867)
T COG2844         658 AWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF  737 (867)
T ss_pred             hHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCC
Confidence            5899988887  36899888777778999999999999999999999999999999999996 88999999999999999


Q ss_pred             CCCcHHH---HHHHHHHhhhc-cC--------C--C-----------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 021491           88 KLTDESV---ISYIEQSLETI-HY--------G--R-----------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQC  142 (311)
Q Consensus        88 ~~~~~~~---~~~l~~~L~~~-~~--------r--r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~gl  142 (311)
                      +++.++.   ...+.+++... ..        |  +           |+.+...++|+|.+.||||||++++++|+++|+
T Consensus       738 ~~~~dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l  817 (867)
T COG2844         738 PVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGL  817 (867)
T ss_pred             ccchhHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhccc
Confidence            8885432   23333333221 11        1  0           255667999999999999999999999999999


Q ss_pred             eEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          143 SVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       143 nI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      +|++|+|.|.|++++|+|||++ ..|.++++ +..+.+.+.+.+.+.
T Consensus       818 ~i~~AkItT~GErveD~F~vt~-~~~~~l~~-~~~q~l~~~ll~al~  862 (867)
T COG2844         818 SLHSAKITTFGERVEDVFIVTD-ADGQALNA-ELRQSLLQRLLEALL  862 (867)
T ss_pred             ceeeeeeccccccceeEEEEec-cccccCCH-HHHHHHHHHHHHHhc
Confidence            9999999999999999999999 68888854 444555555555443

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=7.9e-25  Score=227.77  Aligned_cols=163  Identities=20%  Similarity=0.237  Sum_probs=136.2

Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      ....+.+.|.|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|.+ ++|. ..+++++++|++.|.++|.
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l~  750 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERLA  750 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHHc
Confidence            345588999999999999999999999999999999999875 799999999998 5555 4446788999999999998


Q ss_pred             CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT  269 (311)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~  269 (311)
                      ++.++.   ..+       .+|.+..   .+.|         ..|+.|.|+++.+..+|+|+|.|+|||||||+|+.+|+
T Consensus       751 ~~~~~~---~~~-------~~~~~~~---~~~~---------~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~  808 (856)
T PRK03059        751 EQAPLP---EPS-------KGRLSRQ---VKHF---------PITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLA  808 (856)
T ss_pred             CCCCcc---hhh-------ccccccc---ccCC---------CCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHH
Confidence            865432   101       1121110   0223         68899999999999999999999999999999999999


Q ss_pred             cCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491          270 DMEYVVFHATINTAGERAYLVINCYQFD  297 (311)
Q Consensus       270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~  297 (311)
                      ++|++|++|+|.|.|++|.|+|||.+.+
T Consensus       809 ~~~l~I~~AkI~T~~~~v~DvF~V~~~~  836 (856)
T PRK03059        809 EHRVSVHTAKINTLGERVEDTFLIDGSG  836 (856)
T ss_pred             HCCCeEEEEEEeecCCEEEEEEEEcCCC
Confidence            9999999999999999999999995443

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=2.8e-20  Score=136.66  Aligned_cols=57  Identities=60%  Similarity=0.877  Sum_probs=54.8

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEE
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCI  303 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~  303 (311)
                      +|+|||.|+|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++.+|+++..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~   57 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLST   57 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCC
Confidence            689999999999999999999999999999999999999999999999999998753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=4.7e-20  Score=134.50  Aligned_cols=56  Identities=21%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCC  302 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~  302 (311)
                      +|+|+|.++|||||||+|+++|+++|++|++|+|+|+|++|+|+|||++.+|+|+.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~   56 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT   56 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.78  E-value=2.5e-18  Score=126.31  Aligned_cols=74  Identities=19%  Similarity=0.313  Sum_probs=69.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      +|+|+|.++||||||++|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.|+.++++.+.|++.|.+++..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999999 7899999888999999999988753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.76  E-value=6.5e-18  Score=123.24  Aligned_cols=69  Identities=26%  Similarity=0.400  Sum_probs=65.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (311)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.|+.+++.++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999999 78999988888888888875

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.76  E-value=1.8e-18  Score=127.04  Aligned_cols=53  Identities=21%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEE--ecCCeEEEEEEEEecCCCee
Q 021491          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN--TAGERAYLVINCYQFDSNYC  301 (311)
Q Consensus       248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~--T~g~~a~D~F~v~~~~g~~~  301 (311)
                      |+|+|.|+|||||||+|+++|+++|++|++|||+  |+|++|+|+||| +.+|+++
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl   55 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKI   55 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCcc
Confidence            6899999999999999999999999999999999  999999999999 8888774

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=7.9e-17  Score=118.38  Aligned_cols=71  Identities=24%  Similarity=0.333  Sum_probs=66.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE--ccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW--THNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~--T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      |+|+|.++|||||||+|+++|+++|++|++|+|.  |.|++++|+||| + .+|.++.++++.+.|++.|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 6 578889888888999999988764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.68  E-value=5.6e-16  Score=134.22  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=105.8

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      ++.++++|++.|+||||+++.|+++|+++||||.+++...++|.+.-++.|+.    .    ...+..|+..|.. +.+.
T Consensus         4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~----~~~~~~le~~L~~-l~~~   74 (190)
T PRK11589          4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----S----WNAITLIESTLPL-KGAE   74 (190)
T ss_pred             CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----C----hhHHHHHHHHHHh-hhhh
Confidence            35578999999999999999999999999999999999999999999998865    2    2466788888775 3333


Q ss_pred             CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcC
Q 021491          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM  271 (311)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~  271 (311)
                      .++.     +     ++ ++...      +.           +       ......+.++|.+.|||||+++||++|+++
T Consensus        75 ~~L~-----i-----~v-~~~~~------~~-----------~-------~~~~~~~~v~v~G~DrPGIV~~vT~~la~~  119 (190)
T PRK11589         75 LDLL-----I-----VM-KRTTA------RP-----------R-------PAMPATVWVQVEVADSPHLIERFTALFDSH  119 (190)
T ss_pred             cCeE-----E-----EE-Eeccc------cc-----------c-------ccCCceEEEEEEECCCCCHHHHHHHHHHHc
Confidence            3332     1     01 11110      00           0       001113589999999999999999999999


Q ss_pred             CeEEEEEEEEecCC--eEEEEEEEE
Q 021491          272 EYVVFHATINTAGE--RAYLVINCY  294 (311)
Q Consensus       272 gi~I~~A~I~T~g~--~a~D~F~v~  294 (311)
                      |+||...+..|++.  ...+.|.+.
T Consensus       120 ~iNI~~L~T~~~~a~~~~~~lf~~~  144 (190)
T PRK11589        120 HMNIAELVSRTQPAEGERPAQLHIQ  144 (190)
T ss_pred             CCChhheEEeeecCCCCCcccEEEE
Confidence            99999999999984  667777654

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.66  E-value=1.1e-15  Score=112.73  Aligned_cols=72  Identities=68%  Similarity=1.122  Sum_probs=66.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCC-CCCCCChHHHHHHHHHHHHHhc
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNS-GSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      |+|+|.++||||||++|+++|+++|+||++|+|+|.++++.|+|+|++ .+ +.++.+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999999999999999998 56 7777777889999999998775

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.62  E-value=5.5e-15  Score=128.02  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=109.1

Q ss_pred             CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC----
Q 021491           32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY----  107 (311)
Q Consensus        32 ~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----  107 (311)
                      ...+.+|+++++||||+.+.++++|+++||||++.+....+|.+.-++.|.   +.    |.-...|+..|.....    
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~----~~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GS----WNAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CC----hhHHHHHHHHHHhhhhhcCe
Confidence            457889999999999999999999999999999999999999888778774   22    3345556666544321    


Q ss_pred             ----CC-----CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc------eEEEEEEEEecCCCCCCC
Q 021491          108 ----GR-----SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG------RIASLIYVKDCNSGSPIE  172 (311)
Q Consensus       108 ----rr-----~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~------~~~d~F~V~~~~~g~~~~  172 (311)
                          ++     +......+.++|++.||||++++++++|+++|+||.+.+..|.+.      .+.-.|.+.-| .+    
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~----  152 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-AS----  152 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CC----
Confidence                11     111223489999999999999999999999999999999988753      34444444441 11    


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCc
Q 021491          173 DSQQIDRIEARLRNVLKGDNDI  194 (311)
Q Consensus       173 ~~~~~~~l~~~L~~~L~~~~~~  194 (311)
                        ...+.|++.|.+ +.+++.+
T Consensus       153 --~~~~~L~~~l~~-l~~eL~v  171 (190)
T PRK11589        153 --QDAANIEQAFKA-LCTELNA  171 (190)
T ss_pred             --CCHHHHHHHHHH-HHHHhCc
Confidence              235778888886 4444444

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.62  E-value=4e-15  Score=109.48  Aligned_cols=71  Identities=27%  Similarity=0.502  Sum_probs=64.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|. +|++.|+|+|++ .++.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            679999999999999999999999999999999998 699999999998 67887766788899999987754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.59  E-value=1.2e-14  Score=107.00  Aligned_cols=69  Identities=26%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhh
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLE  103 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~  103 (311)
                      +++|.|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++..+.|++.|.
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~   70 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE   70 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999985 79999999999988887766656666776664

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=1.4e-14  Score=107.40  Aligned_cols=71  Identities=31%  Similarity=0.462  Sum_probs=63.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      +++|+++||||||++++++|+++|+||++|+|+| .+|++.|+|+|++ .++. ..++++++++++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 6899999999998 5555 44567889999999988755

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.59  E-value=1.2e-14  Score=104.75  Aligned_cols=65  Identities=20%  Similarity=0.279  Sum_probs=56.8

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSL  102 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (311)
                      .+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|++.+|.  +...+.+.++++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~--~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG--ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc--chHHHHHHHHHhh
Confidence            58999999999999999999999999999999996 78999999999998876  2245666666665

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.56  E-value=3.5e-14  Score=104.79  Aligned_cols=68  Identities=26%  Similarity=0.342  Sum_probs=58.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCC-CCCCCcHHHHHHHHHHhh
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLN-GNKLTDESVISYIEQSLE  103 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~-g~~~~~~~~~~~l~~~L~  103 (311)
                      |.|.|+++||||||++|+++|+.+||||++|+++|.+|+++|+|+|.+++ |.++.+++..++|++.|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~   69 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLD   69 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999987 777666544555555543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.52  E-value=1.3e-13  Score=102.31  Aligned_cols=65  Identities=26%  Similarity=0.370  Sum_probs=54.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSL  102 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (311)
                      .+.|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|++++|. ..+++..+.|++.|
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L   67 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYL   67 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999996 89999999999998766 33333344444444

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.45  E-value=5.2e-13  Score=111.31  Aligned_cols=151  Identities=14%  Similarity=0.175  Sum_probs=120.0

Q ss_pred             CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC---
Q 021491           32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG---  108 (311)
Q Consensus        32 ~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r---  108 (311)
                      ...+.+|+++++||||+...+|+...++||||+++++...++.+..+..+.   |.    |+-...|+..|....++   
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs----~dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GS----WDAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eC----HHHHHHHHHHhhcccccCCe
Confidence            356799999999999999999999999999999999999888888666664   33    77788899888765541   


Q ss_pred             -----C----C-CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHH
Q 021491          109 -----R----S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQ  176 (311)
Q Consensus       109 -----r----~-~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~  176 (311)
                           |    + ..+...+.+.|.+.||||++.++|+.|..+|+||.+....|.  .+.-...|.+.- .-+-|..  -.
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~--~~  151 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN--LS  151 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--Cc
Confidence                 2    1 446677899999999999999999999999999999888886  355566777765 3344543  45


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 021491          177 IDRIEARLRNVLKGDND  193 (311)
Q Consensus       177 ~~~l~~~L~~~L~~~~~  193 (311)
                      +..|+++|++ |.++..
T Consensus       152 i~~l~~~f~a-l~~~L~  167 (176)
T COG2716         152 ISALRDAFEA-LCDELN  167 (176)
T ss_pred             HHHHHHHHHH-HHHhhc
Confidence            6789999886 555443

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.45  E-value=2.7e-13  Score=112.96  Aligned_cols=128  Identities=19%  Similarity=0.232  Sum_probs=100.6

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN  192 (311)
Q Consensus       113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (311)
                      ..++++|++++.||||++..|++...++||||.++|+.+.|+.+.-+..|+.    .    .+...+|+..|.. +..+.
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s----~dav~~le~~l~~-l~~~~   72 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----S----WDAVTLLEATLPL-LGAEL   72 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----C----HHHHHHHHHHhhc-ccccC
Confidence            4567899999999999999999999999999999999999999998888875    2    3667888888764 55545


Q ss_pred             CcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCC
Q 021491          193 DIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDME  272 (311)
Q Consensus       193 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~g  272 (311)
                      ++.     +.+      +|...                  .++      ......+.++|.+.||||++.++|+.|..+|
T Consensus        73 ~L~-----v~m------~rt~~------------------~~~------~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~  117 (176)
T COG2716          73 DLL-----VVM------KRTGA------------------HPT------PANPAPVWVYVDANDRPGIVEEFTALFDGHG  117 (176)
T ss_pred             CeE-----EEE------eecCC------------------Ccc------CCCCceEEEEEEecCCccHHHHHHHHHHhcC
Confidence            543     211      12110                  010      1223456899999999999999999999999


Q ss_pred             eEEEEEEEEecC
Q 021491          273 YVVFHATINTAG  284 (311)
Q Consensus       273 i~I~~A~I~T~g  284 (311)
                      ++|++....|+-
T Consensus       118 inie~L~~~~~~  129 (176)
T COG2716         118 INIENLVSRTYP  129 (176)
T ss_pred             Cchhhceeeeee
Confidence            999999988863

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.39  E-value=4.4e-12  Score=128.97  Aligned_cols=128  Identities=14%  Similarity=0.138  Sum_probs=107.7

Q ss_pred             EEEEEEe-CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcc
Q 021491          117 TALELTG-TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIR  195 (311)
Q Consensus       117 t~i~V~~-~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  195 (311)
                      ..++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.+...|.|.. ..|.+.+ +   ..+++.+...+.++.++.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~  620 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDFD-P---QEFLQAYKSGVYSELPDP  620 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCCC-h---HHHHHHHHHhhcCCCCcc
Confidence            5788888 9999999999999999999999999999 888999999998 6777653 3   567788877776654321


Q ss_pred             hhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCeEE
Q 021491          196 SAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVV  275 (311)
Q Consensus       196 ~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I  275 (311)
                                                 .        ..|+.+.+..      +++||++.||||+|+.|+++|.    +|
T Consensus       621 ---------------------------~--------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~  655 (693)
T PRK00227        621 ---------------------------A--------PGITATFWHG------NILEVRTEDRRGALGALLGVLP----DL  655 (693)
T ss_pred             ---------------------------c--------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hh
Confidence                                       0        1345555542      7999999999999999999999    99


Q ss_pred             EEEEEEecCCeEEEEEEEEe
Q 021491          276 FHATINTAGERAYLVINCYQ  295 (311)
Q Consensus       276 ~~A~I~T~g~~a~D~F~v~~  295 (311)
                      .+|+++|.|-.+.|.||+..
T Consensus       656 ~~~~~~~~g~~~~~~~~~~~  675 (693)
T PRK00227        656 LWITASTPGATMIVQAALKP  675 (693)
T ss_pred             hhHhhcCCCcceEEEEEecC
Confidence            99999999999999999983

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.38  E-value=6.3e-12  Score=127.87  Aligned_cols=141  Identities=16%  Similarity=0.147  Sum_probs=117.8

Q ss_pred             EEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC----CC
Q 021491           36 TLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----RS  110 (311)
Q Consensus        36 t~V~V~~-~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----r~  110 (311)
                      -.|+|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|.+..|.++++..+.+.++.++.+....    .|
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4677777 9999999999999999999999999999 8888899999998999888888999999888776531    12


Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      ...-..++++|.+.||+|+|+.++++|.    +|..|++.|.|..++|.|++..   +      .....++..+..+|.+
T Consensus       626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~------~~r~~~~~~~~~~~~~  692 (693)
T PRK00227        626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---G------FDRATVERDVTRVLAG  692 (693)
T ss_pred             ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---c------ccHHHHHHHHHHHHhc
Confidence            2222347999999999999999999999    8999999999999999999985   1      1235677777766543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.37  E-value=6.2e-12  Score=92.22  Aligned_cols=67  Identities=30%  Similarity=0.504  Sum_probs=59.9

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhh
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLE  103 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~  103 (311)
                      ++|+|+++|+||+|++++++|+.+|+||++|.++|.+++++|+|+|+++++.+. +.+..+.|++.|.
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            689999999999999999999999999999999988889999999999888876 4456677887775

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.35  E-value=1.1e-11  Score=90.86  Aligned_cols=67  Identities=33%  Similarity=0.556  Sum_probs=59.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (311)
                      +.++|.++||||+|++|+++|+++|+||++|+++|.++++.|+|+|.+ .++.++ ++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence            679999999999999999999999999999999999889999999998 677776 5667777777664

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.33  E-value=1.3e-11  Score=88.96  Aligned_cols=65  Identities=18%  Similarity=0.320  Sum_probs=54.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      ..|.|+++||||||++++++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|..      .+.|+++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCccc------hHHHHHHHHHhh
Confidence            578999999999999999999999999999999976 799999999998 44532      255667766554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.28  E-value=5.1e-11  Score=86.30  Aligned_cols=69  Identities=39%  Similarity=0.590  Sum_probs=61.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      |.+.|.++|+||+|++|+++|+++|+||.++++.|.++.+.|+|++++ .++.+. +.+++++|++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999998889999999998 677774 457888899988765

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.18  E-value=2.8e-10  Score=82.38  Aligned_cols=68  Identities=32%  Similarity=0.456  Sum_probs=59.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhh
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET  104 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (311)
                      |.|.|.++|+||+|++++++|+.+|+||.++++.+.+++++|+|++.+++|.+. +.+..++|++.|..
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~   68 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGE   68 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999987789999999999888874 44566677777653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.96  E-value=1e-08  Score=73.80  Aligned_cols=69  Identities=36%  Similarity=0.636  Sum_probs=59.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      +.|.|.++|+||+|++|+++|+++|++|.++++.+.+++..++|++.. .++.+. ++++++.|++.|.+.
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999998778999999998 455553 357888888888654

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.86  E-value=3.3e-08  Score=71.07  Aligned_cols=67  Identities=42%  Similarity=0.595  Sum_probs=56.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhh
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET  104 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (311)
                      .|.|.++|+||+|++++++|+.+|++|.++.+.+.+++..+.|++..+++... +++..+.|++.|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~   68 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERIARLEEALED   68 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHh
Confidence            68899999999999999999999999999999986669999999998876653 34556667776643

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.86  E-value=2.5e-08  Score=73.74  Aligned_cols=64  Identities=23%  Similarity=0.488  Sum_probs=54.8

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ..+|++.++||||+++.++++|+++|+||.+.+..+.++++.-++.|+. +       ++..++|+++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI-P-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE-S-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe-C-------cccHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999987 2       35678899998874

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.65  E-value=3.4e-07  Score=67.70  Aligned_cols=63  Identities=22%  Similarity=0.256  Sum_probs=49.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhh
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET  104 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (311)
                      +..|++.++||||+++.++++|+++|+||.+.+..+.+|.+.-.+.|.-+       |.-.+.|+++|..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~   64 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE   64 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998888888654       3344555555543

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.63  E-value=4.3e-07  Score=71.36  Aligned_cols=114  Identities=19%  Similarity=0.209  Sum_probs=87.2

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCCCC
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNG  115 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~~~  115 (311)
                      -+|.|+..|+||-++..+.+|.+.|+||..-.|.-.+.+-+-.+.|..+       +...+    +|.+...    ....
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~~----~Lee~gF----~Vr~   68 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAHS----VLEEAGF----TVRE   68 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHHH----HHHHCCc----EEEe
Confidence            3689999999999999999999999999988887667666666777533       22333    4544332    1223


Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~  164 (311)
                      .-++-|..+|+||-|++|+.+|..+++|+.+...++. ..++.-+|.+.+
T Consensus        69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            4578899999999999999999999999999999986 456665555443

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.62  E-value=2.3e-07  Score=68.79  Aligned_cols=69  Identities=23%  Similarity=0.403  Sum_probs=54.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI  194 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (311)
                      ++|++.|+||||++++|++.|+++|+||.+++.++.++++.-...+.. +   +    ...+.|++.|.+ +.++.++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~-~---~----~~~~~l~~~l~~-~~~~~~l   70 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG-S---W----DAIAKLEAALPG-LARRLDL   70 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe-c---c----ccHHHHHHHHHH-HHHHcCC
Confidence            689999999999999999999999999999999999888876666664 2   1    134678888876 4443443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.58  E-value=2.3e-07  Score=64.45  Aligned_cols=65  Identities=17%  Similarity=0.305  Sum_probs=54.1

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCC-CCCcHHHHHHHHH
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGN-KLTDESVISYIEQ  100 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~-~~~~~~~~~~l~~  100 (311)
                      ++|+|.|||+.||-.++|+++.+.|++|..++++|++.+++-+|+|...... ++....+..+|.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~   66 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMS   66 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence            4799999999999999999999999999999999999999999999965433 2333345666654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.57  E-value=2.9e-07  Score=67.79  Aligned_cols=63  Identities=24%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      +++|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.- +.+      ...+.|++.|...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~-p~~------~~~~~l~~~l~~l   63 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI-PDS------ADSEALLKDLLFK   63 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc-CCC------CCHHHHHHHHHHH
Confidence            47899999999999999999999999999999999988888888876 222      1346788888763

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.55  E-value=6.1e-07  Score=66.51  Aligned_cols=48  Identities=19%  Similarity=0.189  Sum_probs=42.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEe
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD   83 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~   83 (311)
                      ..|++.||||||+.+++++.|+++|+||.+.+.+..+|.+.-.+.+..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~   49 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG   49 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence            678999999999999999999999999999999998887765555553

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.51  E-value=1.3e-06  Score=61.84  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=47.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc--eEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG--RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~--~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      +.|.|.++||||+|++++++|+++|+||..+.+.+.++  ....++...+         ....+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999999865  3343443433         2444666666665

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.49  E-value=1.1e-06  Score=62.29  Aligned_cols=47  Identities=28%  Similarity=0.270  Sum_probs=39.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCC--EEEEEEEEE
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGR--FFMDVFHVT   82 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g--~~~d~f~v~   82 (311)
                      +.|.|.++||||++++++.+|+++|+||..+.+.+.++  ..+..+...
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~   49 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV   49 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC
Confidence            46899999999999999999999999999999997543  445444444

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.41  E-value=1.6e-06  Score=63.78  Aligned_cols=62  Identities=15%  Similarity=0.060  Sum_probs=49.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      .|+|.++||||+.++++++|+++|+||.+.+..+.++.+.-.+.+.-+.+.  ....+++.|+.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~--~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA--DSEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC--CHHHHHHHHHH
Confidence            378999999999999999999999999999988878887777888765542  22445555554

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.28  E-value=3.5e-06  Score=63.94  Aligned_cols=65  Identities=20%  Similarity=0.392  Sum_probs=53.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      .++++.|+||||++++|++.|+++|+||.+.+..+.++.+.-.+.+.. + +..    ...+.|++.|...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~-~-~~~----~~~~~L~~~l~~l   66 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI-S-ESN----LDFAELQEELEEL   66 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe-C-CCC----CCHHHHHHHHHHH
Confidence            578999999999999999999999999999999998888777777775 2 101    2246788888763

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.19  E-value=6.1e-06  Score=62.77  Aligned_cols=70  Identities=20%  Similarity=0.365  Sum_probs=53.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN  192 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (311)
                      .++++|.++||||+++++++.|+++|+||.+.+..+.++.+.-.+.+.. + +.+.    ..+.|++.|.+ +.+..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~-~-~~~~----~~~~l~~~l~~-l~~~~   72 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI-S-ESKK----DFAELKEELEE-LGKEL   72 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe-c-CCCC----CHHHHHHHHHH-HHHHc
Confidence            6789999999999999999999999999999999988887776666654 2 1121    23677777776 44433

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.18  E-value=1.1e-05  Score=59.05  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=44.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      +|+|.|+||||++++|++.|+++|+||.+.+..+.  ++.+.-.+.+.. +.+ .    -..+.|++.|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~-~~~-~----~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFEL-EGF-D----LSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEe-CCC-C----CCHHHHHHHHHH
Confidence            47899999999999999999999999999999974  333332333332 100 0    134778888776

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.16  E-value=1.4e-05  Score=59.23  Aligned_cols=62  Identities=21%  Similarity=0.311  Sum_probs=47.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC------ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN------GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~------~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      +++|.++|+||++++|++.|+++|+||.+.+..+.+      +.+.-.+.+.. +.+      .....|++.|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~-p~~------~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL-PAG------TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec-CCC------CCHHHHHHHHHH
Confidence            478999999999999999999999999999999876      44444555554 211      124678888776

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=98.14  E-value=1.2e-05  Score=61.19  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ...|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+. .+.+.+.+.+.|+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKKDFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCCCHHHHHHHHHH
Confidence            578999999999999999999999999999999988777776655654332 12222345555554

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.13  E-value=1e-05  Score=61.30  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=49.2

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+. ...+.+.+.+.|+.
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNLDFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999998777776666776442 11222455555554

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.12  E-value=2.1e-05  Score=58.32  Aligned_cols=62  Identities=21%  Similarity=0.237  Sum_probs=46.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcC------CEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDG------RFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~------g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      .|+|.|+|+||+.++|+..|+++|+||.+.+..+.+      +.+.-.+.+.-+.+  .+...+.+.|+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--CCHHHHHHHHHH
Confidence            378999999999999999999999999999998854      55555566665432  223455555554

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.10  E-value=2.8e-05  Score=56.88  Aligned_cols=63  Identities=14%  Similarity=0.093  Sum_probs=43.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      .|+|.|+||||+++++++.|+++|+||.+.+.++  .++.+.-.+.+.-+.+ ......+.+.++.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF-DLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHH
Confidence            3789999999999999999999999999999986  3344333344433321 1222445555554

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.82  E-value=0.00074  Score=62.28  Aligned_cols=110  Identities=12%  Similarity=0.068  Sum_probs=68.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC----CCC
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY----GRS  110 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----rr~  110 (311)
                      .|+|.|+||||+.+.+++.|+++|+||.+.+.+..  +|++.-.+.+.-+ +...+.+.+++.++.++.....    .+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l~i~l~~   80 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEMTWELIL   80 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCCEEEEec
Confidence            58999999999999999999999999999999974  4777656666543 2223335566666653333321    011


Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEE
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKV  149 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i  149 (311)
                      .  .....|-|.+.-+-.=|..|......-.++..=+-+
T Consensus        81 ~--~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v  117 (280)
T TIGR00655        81 A--DKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV  117 (280)
T ss_pred             C--CCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence            1  112234444444444567777776666555443333

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.81  E-value=0.00025  Score=52.52  Aligned_cols=64  Identities=22%  Similarity=0.363  Sum_probs=47.6

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (311)
                      -.+.|.|.+.||||+|++|+.++++.|+||.+.++.+.  ++.+.-.|.+.- .      +.++++.+-+.|.
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-~------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-K------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-S------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-C------CHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999985  567777777765 1      2455555555543

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.81  E-value=0.0001  Score=68.26  Aligned_cols=73  Identities=19%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc--cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT--HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      ...++|+|.|+||||+++.|+++|+++|+||.+.+..+  .+|.+.-.+.+..  +..+    ...+.|++.|.+ +.++
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~-l~~~   76 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAA-LAEE   76 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHH-HHHH
Confidence            35688999999999999999999999999999999999  7776555555543  1112    235788888876 4443


Q ss_pred             CC
Q 021491          192 ND  193 (311)
Q Consensus       192 ~~  193 (311)
                      ..
T Consensus        77 l~   78 (286)
T PRK06027         77 FE   78 (286)
T ss_pred             hC
Confidence            43

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.80  E-value=0.00055  Score=63.41  Aligned_cols=66  Identities=8%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--EcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS--SDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~--t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ...|+|.|+||||+.+++++.|+++|+||++.+.+  +..|.+.-.+.+.+......+...+.+.++.
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~   76 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQP   76 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999998  3334443333333221122333455555554

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.79  E-value=0.0012  Score=52.18  Aligned_cols=113  Identities=13%  Similarity=0.094  Sum_probs=79.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcchh
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSA  197 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~  197 (311)
                      +|+|...++||=|+..+..|.++|+||.-..|.-.++.-.--..|..         ++   .-.+.    |....     
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d---~A~~~----Lee~g-----   63 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PD---EAHSV----LEEAG-----   63 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hH---HHHHH----HHHCC-----
Confidence            68899999999999999999999999998888877664444444433         11   11122    22211     


Q ss_pred             hhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCeEEEE
Q 021491          198 KMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFH  277 (311)
Q Consensus       198 ~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~  277 (311)
                                              |           .  |.+       ..++-|...|+||=|.+|+.+|.+.++|+.+
T Consensus        64 ------------------------F-----------~--Vr~-------~dVlaVEmeD~PG~l~~I~~vl~d~diNldY   99 (142)
T COG4747          64 ------------------------F-----------T--VRE-------TDVLAVEMEDVPGGLSRIAEVLGDADINLDY   99 (142)
T ss_pred             ------------------------c-----------E--EEe-------eeEEEEEecCCCCcHHHHHHHHhhcCcCcee
Confidence                                    1           0  111       2278889999999999999999999999998


Q ss_pred             EEEEe-cCCeEEEEEEEEe
Q 021491          278 ATINT-AGERAYLVINCYQ  295 (311)
Q Consensus       278 A~I~T-~g~~a~D~F~v~~  295 (311)
                      +-.-+ ..++|.=+|-+.|
T Consensus       100 iYAFv~ek~KAlli~r~ed  118 (142)
T COG4747         100 IYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             eeeeeecCceEEEEEEhhH
Confidence            87654 4566665554443

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.73  E-value=5.3e-05  Score=57.06  Aligned_cols=67  Identities=18%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      ..+|+|.++||||+.+.++++|+++|+||++-.-.-..|.+.-.+.|..+  ...    .....++..|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~~----~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KEV----VDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hHh----ccHHHHHHHHHHHH
Confidence            57899999999999999999999999999998887788988888888762  111    23356777666543

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.71  E-value=0.00016  Score=50.52  Aligned_cols=67  Identities=13%  Similarity=0.241  Sum_probs=56.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ++|+|.++|+.||=.++++++.+.|++|..+.++|-|.=..-+|+|.. . ..++  +-++..|++.|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~-~-~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP-R-PPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec-C-CCCC--cccHHHHHHHHHhc
Confidence            479999999999999999999999999999999999888888899986 3 2233  35778888887753

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.70  E-value=0.00023  Score=52.68  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEEEEEec
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVINCYQF  296 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F~v~~~  296 (311)
                      .+.+.|.+.||||+|++|++++++.|+||.++.+.+.  ++.+.=.|.|.=.
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~   57 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK   57 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence            4579999999999999999999999999999999995  5666666665543

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.63  E-value=0.00058  Score=49.50  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      +.|.+.||||+|++|+.++++.|.||.+....+. .+.+...|.+.- .      +.++++.+...|.+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-~------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-P------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-C------CHHHHHHHHHHHhc
Confidence            6789999999999999999999999998888765 466666666664 1      24566666666553

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.62  E-value=0.00029  Score=65.01  Aligned_cols=69  Identities=16%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN  192 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (311)
                      +|+|.|+||||+++.|++.|+++|+||.+.+.+..  ++++.-.+.+.. + +...    ..+.|++.|.+++..+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~-~-~~~~----~~~~l~~~l~~~~~~~~   72 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL-E-GFRL----EESSLLAAFKSALAEKF   72 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe-C-CCCC----CHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999985  477776666665 2 2122    23667777776344333

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.58  E-value=0.00033  Score=64.90  Aligned_cols=67  Identities=19%  Similarity=0.319  Sum_probs=48.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE--ccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW--THNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~--T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..++|+|.|+||||+++.|++.|+++|+||.+.+.+  +..+.+...+.+.. .....+    ..+.|+++|.+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~   76 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQP   76 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHH
Confidence            356899999999999999999999999999999997  44454444444443 111122    24677777776

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.53  E-value=0.00057  Score=63.24  Aligned_cols=65  Identities=20%  Similarity=0.338  Sum_probs=49.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..++++|.|+||||+++++++.|+++|+||.+.+..+.  ++.+.-.+.+.. +.+      ...+.|++.|.+
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~-p~~------~~~~~L~~~L~~   72 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS-EEG------LDEDALRAGFAP   72 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec-CCC------CCHHHHHHHHHH
Confidence            35789999999999999999999999999999999854  455555555554 212      124678888776

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.52  E-value=0.0034  Score=58.13  Aligned_cols=49  Identities=14%  Similarity=0.087  Sum_probs=42.1

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEE
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT   82 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~   82 (311)
                      ....|+|.|+||||+.+.++++|+++|+||.+.+.++  .+|.+.-.+.+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~   55 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE   55 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence            3578999999999999999999999999999999998  777655455554

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.50  E-value=0.00013  Score=55.01  Aligned_cols=67  Identities=15%  Similarity=0.131  Sum_probs=47.3

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL  102 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (311)
                      ...|+|.++||||+.+.++++|+++|+||++-...--+|++.-.+.|.-+. +..+-..++++++...
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~-~~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK-EVVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh-HhccHHHHHHHHHHHH
Confidence            357999999999999999999999999999877666777766555554321 2122233445455443

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.47  E-value=0.0043  Score=57.43  Aligned_cols=64  Identities=9%  Similarity=0.095  Sum_probs=48.2

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ...|+|.|+||||+.++++++|+++|+||.+.+.++  .++.+.-.+.+..+.+.  +...+++.|+.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~   72 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAP   72 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHH
Confidence            467999999999999999999999999999999985  44555545666544432  22455665654

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.47  E-value=0.00066  Score=61.10  Aligned_cols=66  Identities=14%  Similarity=0.157  Sum_probs=48.7

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ....+++.|||+||+.++|++.|+.+||||.+++.++  ..|++.-...... ++.+.+.+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPLDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcccHHHHHHHHHH
Confidence            4578999999999999999999999999999999997  2466654444432 3343444455555554

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.38  E-value=0.0017  Score=47.01  Aligned_cols=46  Identities=11%  Similarity=0.150  Sum_probs=39.2

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD   83 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~   83 (311)
                      +.|.++||||+|++|+.+++..|.||.+....+ .++.+...|.+.-
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev   48 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA   48 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc
Confidence            678999999999999999999999999888876 4577776677754

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.36  E-value=0.0023  Score=45.45  Aligned_cols=61  Identities=25%  Similarity=0.387  Sum_probs=42.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-----CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      +.|..+|+||+|++|+.+|++.|+||.+......     .+...-.|.+.. .      +.++++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-~------~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-R------GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence            3578899999999999999999999998876643     244444444443 1      23455566666543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.36  E-value=0.0014  Score=47.77  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=32.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH  152 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~  152 (311)
                      .+.|.+.||+|+|++|+.++++.|+||.+.++.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999875

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.27  E-value=0.0021  Score=45.78  Aligned_cols=46  Identities=11%  Similarity=0.137  Sum_probs=38.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      ..+.|..+|+||.|++++..|+++|+||.+..++..++.  .++.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            367889999999999999999999999999998776554  4555543

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.26  E-value=0.0029  Score=45.13  Aligned_cols=61  Identities=21%  Similarity=0.259  Sum_probs=43.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-c-eEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-G-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~-~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      +.+.|..+|+||.|+++++.|+++|+||.+....... + ...-.+.+..         ++..+++.+.|.+
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~---------~~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT---------QEDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC---------HHHHHHHHHHHHH
Confidence            4688999999999999999999999999988777652 2 3333444443         1344566666554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.25  E-value=0.0011  Score=45.41  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      +.|..+|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999988765 66776776654

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.22  E-value=0.00084  Score=60.45  Aligned_cols=66  Identities=18%  Similarity=0.420  Sum_probs=47.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..+++++.|+|+||+++.|++.|+++|+||.++.-++-  +|++..--.+..  .+.+.    ..+.|+..+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence            56899999999999999999999999999999999953  344332222222  23332    34667777766

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.19  E-value=0.0029  Score=54.19  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=47.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      ..+.|.+.|+||+|++|++.|+++|+||.+......  .+...-++.+..        ++..+++|.+.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999763  344433343332        1233677777777643

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.18  E-value=0.0011  Score=45.49  Aligned_cols=46  Identities=15%  Similarity=0.124  Sum_probs=38.9

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC-CeEEEEEEEEe
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLVINCYQ  295 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g-~~a~D~F~v~~  295 (311)
                      +++..+|+||.|.+++..|.+.|+||.+..+...+ +++.=.|-+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35789999999999999999999999999987765 77777776554

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.17  E-value=0.0036  Score=46.15  Aligned_cols=62  Identities=6%  Similarity=0.086  Sum_probs=44.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceE-EEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRI-ASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~-~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..+.+...|+||.|++++++|+..|.||.+..+.-. .... .-++.+..        ++..+++|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            468999999999999999999999999999888743 3333 33333332        23556667666654

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.13  E-value=0.0046  Score=44.83  Aligned_cols=62  Identities=26%  Similarity=0.371  Sum_probs=45.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChH-HHHHHHHHHHH
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQ-QIDRIEARLRN  186 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~-~~~~l~~~L~~  186 (311)
                      .+.|.+.|+||+|++|++.|+++|+||......+. ++.+.-.|.+.. .      +.+ +++.|-+.|.+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v-~------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT-S------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc-C------chHHHHHHHHHHHhc
Confidence            57899999999999999999999999999877654 355666666654 1      123 55666666553

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.12  E-value=0.0035  Score=46.95  Aligned_cols=63  Identities=21%  Similarity=0.243  Sum_probs=46.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..+.+...|+||.|++|++.|+..|+||.+..+....  +...-++.+..   |    ++..++++.+.|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999998653  33333444431   2    24566777777664

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.07  E-value=0.0022  Score=45.57  Aligned_cols=45  Identities=13%  Similarity=0.084  Sum_probs=37.5

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQ  295 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~  295 (311)
                      .+.|..+|+||.|++|+.+|++.|+||.+.-+...++.  -++.+..
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            57788999999999999999999999999998776664  4454444

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.06  E-value=0.0044  Score=47.61  Aligned_cols=64  Identities=17%  Similarity=0.266  Sum_probs=45.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ....|++...|+||+|++|++.|+..|.||.+....-.+ ....-+..+..   +     +..++++.+.|.+
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~K   71 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEK   71 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhC
Confidence            456799999999999999999999999999999887543 22222222221   1     2466777777665

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.03  E-value=0.0018  Score=47.20  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=32.8

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA  283 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~  283 (311)
                      .++|.+.||+|+|++|+.++++.|+||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            37899999999999999999999999999999875

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK07431 aspartate kinase; Provisional

Probab=97.03  E-value=0.16  Score=51.72  Aligned_cols=183  Identities=14%  Similarity=0.119  Sum_probs=114.0

Q ss_pred             CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-
Q 021491           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-  108 (311)
Q Consensus        33 ~~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-  108 (311)
                      .+...|.|.+.   +.||+.+++..+|++.|++|....   .++..+ .|.|...+     .++..+.|++.+...... 
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d-----~~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAED-----GDKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence            35677888875   799999999999999999997544   333333 35554311     135667777776443221 


Q ss_pred             -------C---C-----CCCCCeEEEEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEEc-cC--ceEEEEEEEEecCCCC
Q 021491          109 -------R---S-----NSFNGLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWT-HN--GRIASLIYVKDCNSGS  169 (311)
Q Consensus       109 -------r---~-----~~~~~~t~i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~--~~~~d~F~V~~~~~g~  169 (311)
                             +   +     ....+...|++. .++.+|+++++.+.|+++|++|..-.... .+  |...-.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence                   0   0     223345566665 46889999999999999999998764432 12  22333344432     


Q ss_pred             CCCChHHHHHHHHHHHHHhcCCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeE
Q 021491          170 PIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSV  249 (311)
Q Consensus       170 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tv  249 (311)
                           ..+....+.+.+ +..+..                                        +..+.+    ..+.+.
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~----------------------------------------~~~i~~----~~~va~  521 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP----------------------------------------GAEVED----GPAIAK  521 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC----------------------------------------CceEEE----eCCeEE
Confidence                 222333333332 221111                                        011111    124667


Q ss_pred             EEEEeC---CccchHHHHHHHhhcCCeEEEEEE
Q 021491          250 VNVQCK---DRTKLLFDVVCTLTDMEYVVFHAT  279 (311)
Q Consensus       250 l~v~~~---DRpGLL~~I~~~l~~~gi~I~~A~  279 (311)
                      +.|.+.   .+||++.++.++|++.||+|....
T Consensus       522 VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        522 VSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             EEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            888875   889999999999999999997665

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.01  E-value=0.0059  Score=51.45  Aligned_cols=64  Identities=17%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      .+++|...|+||.|++|++.|+++|+||.+..+...+  +...-++.+..        ++..+++|.+.|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence            3689999999999999999999999999998887654  44444555542        2466788888887643

acetohydroxyacid synthase is a synonym.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.01  E-value=0.0033  Score=44.59  Aligned_cols=45  Identities=13%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc-----CCEEEEEEEEE
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD-----GRFFMDVFHVT   82 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~-----~g~~~d~f~v~   82 (311)
                      +.|.++|+||+|++++.+|+.+|+||.+......     .+.....|.+.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~   50 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLE   50 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEE
Confidence            3578899999999999999999999998877642     36665555554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.95  E-value=0.0061  Score=42.83  Aligned_cols=58  Identities=14%  Similarity=0.190  Sum_probs=44.4

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      +.|.++|+||++++++.+|+++|+||.+..+...  ++...-.|.+.++     ....+.+.|++
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-----~~~~l~~~l~~   61 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-----VPEEVLEELKA   61 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence            5788999999999999999999999999998864  3777766777321     12455555553

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.93  E-value=0.0024  Score=44.96  Aligned_cols=44  Identities=16%  Similarity=0.177  Sum_probs=38.1

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC--CeEEEEEEE
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG--ERAYLVINC  293 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g--~~a~D~F~v  293 (311)
                      +.|.+.|+||+|.+|+++|+++|++|.+..+...+  +.+.=.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57889999999999999999999999999998865  566666666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.90  E-value=0.0087  Score=50.62  Aligned_cols=64  Identities=20%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      ..++|...|+||.|++|++.|+.+|+||.+..+....  +...-++.+..        ++..++++...|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence            4689999999999999999999999999998876543  44555555543        2466778888877643

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.86  E-value=0.0053  Score=43.33  Aligned_cols=35  Identities=9%  Similarity=0.152  Sum_probs=32.5

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA  283 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~  283 (311)
                      .+.+.+.|+||+|.+|+.+|+++|++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT   36 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence            47889999999999999999999999999998875

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.84  E-value=0.007  Score=44.64  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=45.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-C-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-N-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..+++...|+||.|+++++.|...|.||.+..+... + +...-++.+.+         +..+++|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhc
Confidence            578999999999999999999999999999999864 3 43444444422         2345667666654

>PRK07431 aspartate kinase; Provisional

Probab=96.81  E-value=0.097  Score=53.32  Aligned_cols=191  Identities=14%  Similarity=0.157  Sum_probs=110.8

Q ss_pred             ecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-CCCCCCCeEEE
Q 021491           42 SARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-RSNSFNGLTAL  119 (311)
Q Consensus        42 ~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-r~~~~~~~t~i  119 (311)
                      .++.+|+++++...|+++|+||..-.... ..+..--.|.+...+-     ....+.+++ +...... .-....+...|
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~~~i~~~~~~a~I  351 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGGAEVLVETNVAKL  351 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCCCcEEEeCCeEEE
Confidence            57889999999999999999999765543 3333333577753211     112222332 2221110 00123467889


Q ss_pred             EEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcch
Q 021491          120 ELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRS  196 (311)
Q Consensus       120 ~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~  196 (311)
                      .|.+.   +++|+++++.++|++.|++|....  +. + ..-.|.|..          +..++.-+.|++.+..+..-. 
T Consensus       352 svvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS-e-~~Is~vv~~----------~d~~~av~~Lh~~f~~~~~~~-  416 (587)
T PRK07431        352 SISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS-E-VKVSCVIDA----------EDGDKALRAVCEAFELEDSQI-  416 (587)
T ss_pred             EEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC-C-CEEEEEEcH----------HHHHHHHHHHHHHhccCCccc-
Confidence            99985   799999999999999999996554  22 1 222344543          233445555665553221100 


Q ss_pred             hhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEE-eCCccchHHHHHHHhhcCCeEE
Q 021491          197 AKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVV  275 (311)
Q Consensus       197 ~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~-~~DRpGLL~~I~~~l~~~gi~I  275 (311)
                        + +.      +.+..+        +.       ..-+-|.    ...+...+.|. .++.||++++|...|+++|++|
T Consensus       417 --~-~~------~~~~~~--------~~-------~~v~gIa----~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~i  468 (587)
T PRK07431        417 --E-IN------PTASGQ--------DE-------PEVRGVA----LDRNQAQLAIRNVPDRPGMAASIFGALAEANISV  468 (587)
T ss_pred             --c-cC------ccccCC--------CC-------CcEEEEE----ccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeE
Confidence              0 10      000000        00       0112222    22344455553 5788999999999999999999


Q ss_pred             EEEEEE
Q 021491          276 FHATIN  281 (311)
Q Consensus       276 ~~A~I~  281 (311)
                      .....+
T Consensus       469 d~i~~~  474 (587)
T PRK07431        469 DMIVQS  474 (587)
T ss_pred             EEEEec
Confidence            988553

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.81  E-value=0.012  Score=42.30  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-C-ceEEEEEEE
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-N-GRIASLIYV  162 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~-~~~~d~F~V  162 (311)
                      .+.|.+.|+||+|+++++.|+++|+||......+. + +.+.-.+.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~   48 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT   48 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence            47889999999999999999999999999887654 2 444433333

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.80  E-value=0.011  Score=41.80  Aligned_cols=46  Identities=17%  Similarity=0.373  Sum_probs=36.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEE
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVK  163 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~  163 (311)
                      .+.+.++|+||.|++++..|+++|+||.+....+. ++.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998888765 34444344443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.79  E-value=0.016  Score=40.83  Aligned_cols=46  Identities=17%  Similarity=0.204  Sum_probs=36.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-C-ceEEEEEEEE
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-N-GRIASLIYVK  163 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~-~~~~d~F~V~  163 (311)
                      .+.+.+.|+||+|++|+..|+++|++|.+....+. + +.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   49 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE   49 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence            47788999999999999999999999999988775 3 4444444443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.72  E-value=0.0058  Score=43.59  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=37.3

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEEEEE
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVINCY  294 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F~v~  294 (311)
                      .+.+..+|+||.|++++++|+++|++|.+......  +....-.|.++
T Consensus         3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            57889999999999999999999999998877665  22444456665

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.71  E-value=0.0082  Score=43.45  Aligned_cols=47  Identities=6%  Similarity=-0.011  Sum_probs=38.8

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD   83 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~   83 (311)
                      .+.|.++|+||++++++.+|+.+|.||......+ .+|.+--.|.+..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v   49 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT   49 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence            4789999999999999999999999999887765 3466665677753

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.69  E-value=0.014  Score=41.32  Aligned_cols=46  Identities=9%  Similarity=0.016  Sum_probs=37.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc-CCEEEEEEEEE
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD-GRFFMDVFHVT   82 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~-~g~~~d~f~v~   82 (311)
                      ++.+.++|+||.+++++..|+++++||.+....+. ++...-.+.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998887764 45554445554

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.67  E-value=0.012  Score=44.10  Aligned_cols=45  Identities=16%  Similarity=0.150  Sum_probs=36.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-Ec-CCEEEEEEEE
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SD-GRFFMDVFHV   81 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~-~g~~~d~f~v   81 (311)
                      .+.++..|+||.++++++.|+..|+||.+-.+. |. .|..--++.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv   50 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQV   50 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEE
Confidence            589999999999999999999999999999987 43 3544433444

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.67  E-value=0.015  Score=40.86  Aligned_cols=58  Identities=26%  Similarity=0.314  Sum_probs=42.0

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-c-CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-D-GRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      +.+.++|+||.+++++..|+++|+||....... . ++...-.+.+.+.     ....+.+.|++
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-----~~~~~i~~l~~   61 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-----IDEEVIEEIKK   61 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-----CCHHHHHHHHc
Confidence            577899999999999999999999999888765 2 4555544555432     22455565553

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.65  E-value=0.24  Score=41.93  Aligned_cols=103  Identities=12%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-Ec-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-----
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SD-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-----  108 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-----  108 (311)
                      ..++|..+|+||.|+++++.|+..|+||.+-.+. +. .|...-++.+..   .    ++..+.|.+-|......     
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~---~----~~~i~qi~kQl~KLidV~~V~~   75 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG---D----EQVIEQITKQLNKLIDVLKVVD   75 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC---C----HHHHHHHHHHHhccccEEEEEe
Confidence            3688999999999999999999999999998886 43 566665666642   2    22334444434332210     


Q ss_pred             -C--CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEE
Q 021491          109 -R--SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       109 -r--~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                       .  +.-......+.|.+...  --.++.......+.+|.+.
T Consensus        76 ~~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv  115 (161)
T PRK11895         76 LTEEAHVERELALVKVRASGE--NRAEILRLADIFRAKIVDV  115 (161)
T ss_pred             cCCcchhheEEEEEEEECCcc--cHHHHHHHHHHhCCEEEEe
Confidence             0  11233455667766431  1346666666667666655

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.65  E-value=0.0075  Score=44.58  Aligned_cols=49  Identities=8%  Similarity=-0.008  Sum_probs=38.3

Q ss_pred             eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCC-eEEEEEEEEec
Q 021491          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLVINCYQF  296 (311)
Q Consensus       248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~-~a~D~F~v~~~  296 (311)
                      +.+.+..+|+||.|++|...|+++|+||.+......++ ...=.|||...
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~   51 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE   51 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence            35677889999999999999999999999998776543 34445666544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.63  E-value=0.0098  Score=45.70  Aligned_cols=37  Identities=3%  Similarity=0.129  Sum_probs=33.6

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491           33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS   69 (311)
Q Consensus        33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~   69 (311)
                      .+...+.++..|+||+++++++.|+..|+||.+-.+.
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg   42 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL   42 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence            3446799999999999999999999999999998886

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.59  E-value=0.0098  Score=43.83  Aligned_cols=46  Identities=9%  Similarity=0.061  Sum_probs=36.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-Ec-CCEEEEEEEE
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SD-GRFFMDVFHV   81 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~-~g~~~d~f~v   81 (311)
                      ..+.+...|+||.+++++++|+..|+||.+-.+. |. .|..--++.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~   50 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA   50 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE
Confidence            3589999999999999999999999999988886 43 3544433443

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.57  E-value=0.0029  Score=44.96  Aligned_cols=57  Identities=16%  Similarity=0.249  Sum_probs=42.2

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHH
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIE   99 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~   99 (311)
                      +++.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+..+     ..+++.++|+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~   58 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALR   58 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHH
Confidence            67899999999999999999999999877655555777655655432     2245555555

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.53  E-value=0.01  Score=41.37  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=35.7

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEE
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHV   81 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v   81 (311)
                      +.|..+|+||-+++++.+|+++|+||.+...+..  .+...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            6788999999999999999999999998877643  3555544555

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.50  E-value=0.0082  Score=43.18  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=32.1

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA  283 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~  283 (311)
                      .+.|.+.|+||+|.+|++.|+++|++|......+.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~   36 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA   36 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence            47899999999999999999999999999987664

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.49  E-value=0.0088  Score=42.13  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEE
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVI  291 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F  291 (311)
                      +.+.+.|+||.|.+|++.|+++|++|.+......  ++.+.=.|
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i   45 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVI   45 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEE
Confidence            5778999999999999999999999999987652  34444334

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.43  E-value=0.037  Score=45.39  Aligned_cols=70  Identities=20%  Similarity=0.282  Sum_probs=49.7

Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ......+.+.|.+.|+||+|++|++.|+++|+||.+....+.  ++.+.-.|.+.- + +.    +.++..+.+.|.+
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev-~-~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL-S-KS----DIDLEELEEELKK  122 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe-C-Cc----hhhHHHHHHHHHc
Confidence            445568899999999999999999999999999999887765  344444454543 1 11    1344556565553

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.43  E-value=0.0047  Score=43.85  Aligned_cols=45  Identities=13%  Similarity=0.148  Sum_probs=36.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEE
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK  163 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~  163 (311)
                      +.+.+.|+||+|++++..|++.|+||.+....+.++.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            567899999999999999999999998876665556665555544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.37  E-value=0.044  Score=37.46  Aligned_cols=46  Identities=20%  Similarity=0.384  Sum_probs=36.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      +.|.+.|+||.+.+++..|.+++++|.+..+...+ +...-.|.+..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV   47 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence            46779999999999999999999999999887765 44444454543

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.34  E-value=0.02  Score=40.95  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEe
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTD   83 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~   83 (311)
                      +.+..+|+||.+++++..|+++|+||.+.....  .++...-.|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            567899999999999999999999999887764  4567766676643

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.34  E-value=0.01  Score=41.43  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN  153 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~  153 (311)
                      ++.|.-+|+||-|+++++.|+++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367888999999999999999999999888775543

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.30  E-value=0.045  Score=39.09  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEE
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT   82 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~   82 (311)
                      +.+.+..+|+||.+.+++.+|+++|+||.+....-  ..+...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            57899999999999999999999999999886653  345666556664

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.30  E-value=0.064  Score=43.96  Aligned_cols=49  Identities=16%  Similarity=0.143  Sum_probs=39.8

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEEE
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVT   82 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v~   82 (311)
                      ....+.|.+.|+||++++++.+|+.+|+||.+....+.  ++.+.-.|.+.
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            46789999999999999999999999999998887763  45454445554

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.29  E-value=0.022  Score=42.01  Aligned_cols=46  Identities=9%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEe--cCCeEEEEEEE
Q 021491          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT--AGERAYLVINC  293 (311)
Q Consensus       248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T--~g~~a~D~F~v  293 (311)
                      ..+++...++||.|.+|+..|..+|+||.+..+.-  .++...=++-+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v   51 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV   51 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence            47899999999999999999999999999999975  45556656655

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.29  E-value=0.016  Score=49.70  Aligned_cols=107  Identities=9%  Similarity=0.094  Sum_probs=60.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC----C
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----R  109 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----r  109 (311)
                      ..+.|.+.|+||++++++++|+..|+||.+-.+..  ..|..  .+.+.-+.+... -+.+.++|++.. +....    .
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~~~~-ieqL~kQL~KLi-dVl~V~~~~~   78 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGDDRT-IEQLTKQLYKLV-NILKVQDITN   78 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECCHHH-HHHHHHHHHHHh-HhhEEEecCC
Confidence            46899999999999999999999999999999974  33444  333332322210 133444444422 11110    0


Q ss_pred             -CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEE
Q 021491          110 -SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAK  148 (311)
Q Consensus       110 -~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~  148 (311)
                       +.-......+.|.++..  --..+.+.....+..|.+..
T Consensus        79 ~~~v~rEl~LiKv~~~~~--~r~ei~~~~~~f~a~ivdv~  116 (174)
T CHL00100         79 IPCVERELMLIKINVNSQ--TRPEILEIAQIFRAKVVDLS  116 (174)
T ss_pred             ccceeeEEEEEEEecCCc--CHHHHHHHHHHhCCEEEEec
Confidence             11233455677776421  12344444445565555543

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.29  E-value=0.064  Score=39.52  Aligned_cols=48  Identities=17%  Similarity=0.281  Sum_probs=38.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      +.+.+..+|+||.|+++.+.|+++|+||.+-...... +...-.|+|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            3466777999999999999999999999988766553 34556788875

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.28  E-value=0.018  Score=48.56  Aligned_cols=102  Identities=12%  Similarity=0.154  Sum_probs=64.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-c-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC------
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-D-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG------  108 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r------  108 (311)
                      .++|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.|..   .    +...+.|.+-|......      
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d----~~~i~qi~kQl~Kli~V~~V~~~   75 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---D----DKVLEQITKQLNKLVDVIKVSDL   75 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---C----HHHHHHHHHHHhcCccEEEEEec
Confidence            5889999999999999999999999999988874 3 466665666642   2    23344444444433221      


Q ss_pred             C--CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEE
Q 021491          109 R--SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       109 r--~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                      .  +.-......+.|.++..  --..|.+.....+..|.+.
T Consensus        76 ~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv  114 (157)
T TIGR00119        76 TESAIVERELCLVKVSAPGE--GRDEIIRLTNIFRGRIVDV  114 (157)
T ss_pred             CCCcceeeEEEEEEEECCcc--CHHHHHHHHHHhCCEEEEe
Confidence            0  11233455677776432  2345555556667666654

acetohydroxyacid synthase is a synonym.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.25  E-value=0.0031  Score=45.83  Aligned_cols=47  Identities=23%  Similarity=0.487  Sum_probs=39.2

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEe--cCCeEEEEEEEEe
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT--AGERAYLVINCYQ  295 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T--~g~~a~D~F~v~~  295 (311)
                      -+|+.++-||-.+|++|-||+.+|+.|.+|.|..  .+++...+|-+--
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL   50 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLL   50 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEee
Confidence            3789999999999999999999999999999964  4667666644443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.21  E-value=0.016  Score=37.69  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG  284 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g  284 (311)
                      |.+.++|+||++++|+.+|+++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987754

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.18  E-value=0.014  Score=41.66  Aligned_cols=45  Identities=22%  Similarity=0.350  Sum_probs=36.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEE
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVK  163 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~  163 (311)
                      +.+..+|+||.++++++.|+++|+||.+......  ++...-+|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            4578999999999999999999999998887653  45666566554

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.15  E-value=0.045  Score=39.38  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH  152 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~  152 (311)
                      +.|.-+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998876654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=96.13  E-value=0.065  Score=44.64  Aligned_cols=69  Identities=28%  Similarity=0.350  Sum_probs=50.8

Q ss_pred             CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      .......+.+...|+||+|++|++.|++.|+||........ +|.+.-.|.+.. .  ..   ...++.|.+.|.+
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev-s--~~---~~~L~~Li~~L~~  134 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT-S--SM---EGDIDELLEKLRN  134 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe-C--Ch---HHHHHHHHHHHHc
Confidence            35567789999999999999999999999999998877654 566666666664 1  11   1255666666553

>PRK04435 hypothetical protein; Provisional

Probab=96.10  E-value=0.039  Score=45.98  Aligned_cols=58  Identities=14%  Similarity=0.008  Sum_probs=45.8

Q ss_pred             EEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491           26 VIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD   83 (311)
Q Consensus        26 ~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~   83 (311)
                      -+.....+....+.+..+|+||++++|+.+|+.+|+||....... .+|.+--.|.+..
T Consensus        60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            333434556678999999999999999999999999999888765 4576666677754

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.98  E-value=0.26  Score=47.65  Aligned_cols=105  Identities=16%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             eEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491           35 ATLVKVD---SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN  111 (311)
Q Consensus        35 ~t~V~V~---~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~  111 (311)
                      ...|+|.   .+++||+++++..+|++.|++|..-.... .. .--.|.|...+     .++..+.|++.+.......-.
T Consensus       260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~-~~Is~~V~~~d-----~~~a~~~L~~~~~~~~~~~i~  332 (401)
T TIGR00656       260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SE-TSISLTVDETD-----ADEAVRALKDQSGAAGLDRVE  332 (401)
T ss_pred             EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CC-ceEEEEEeHHH-----HHHHHHHHHHHHHhcCCceEE
Confidence            4456676   57889999999999999999997443321 22 11236663211     123444444433211100001


Q ss_pred             CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEE
Q 021491          112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE  146 (311)
Q Consensus       112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~  146 (311)
                      ...+...|.|.+.   ++||+++++..+|.+.|+||..
T Consensus       333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            2346778888885   7999999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK06635 aspartate kinase; Reviewed

Probab=95.98  E-value=0.18  Score=48.84  Aligned_cols=100  Identities=13%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             ecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCC-CCCCCCeEEE
Q 021491           42 SARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR-SNSFNGLTAL  119 (311)
Q Consensus        42 ~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr-~~~~~~~t~i  119 (311)
                      ..++||+++++..+|++.|+||.....+. .+|..--.|.|...+.     +...+.|++ +......+ -....+...+
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~~~i~~~~~ia~i  343 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGAESVTYDDDIAKV  343 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCcceEEEcCCeEEE
Confidence            56789999999999999999999654442 3334554566643111     223333333 11111000 0123466778


Q ss_pred             EEEe---CCcccHHHHHHHHHHhCCCeEEEE
Q 021491          120 ELTG---TDRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       120 ~V~~---~DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                      .|.+   +++||.++++.++|++.|+||...
T Consensus       344 svvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        344 SVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             EEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            8876   689999999999999999999874

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.97  E-value=0.033  Score=38.13  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=35.6

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC-CeEEEEEEE
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLVINC  293 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g-~~a~D~F~v  293 (311)
                      +.+.+.|+||++.+|+..|.+++++|....+...+ +.+.-.|-+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~   45 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL   45 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence            46789999999999999999999999999998776 433333433

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.92  E-value=0.033  Score=39.47  Aligned_cols=54  Identities=17%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             CcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          125 DRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       125 DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      |+||.|.+|++.|...|+||.+..+...  ++...-++.+..    .    +..++.|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhc
Confidence            7899999999999999999999999874  455554554443    1    1344566666554

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.90  E-value=0.052  Score=35.13  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.0

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD   71 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~   71 (311)
                      |.+.++|+||++++++.+|+..|++|........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~   34 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS   34 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence            4688999999999999999999999999998764

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK07334 threonine dehydratase; Provisional

Probab=95.88  E-value=0.18  Score=48.94  Aligned_cols=64  Identities=20%  Similarity=0.301  Sum_probs=49.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-----CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      .+.|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.|.- .      +.++++.+...|.+
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-~------d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-R------DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999998764     455555555543 1      24566677776664

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.84  E-value=0.023  Score=40.94  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=30.4

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA  283 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~  283 (311)
                      +.+.-+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5778999999999999999999999998876654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.77  E-value=0.037  Score=39.51  Aligned_cols=47  Identities=19%  Similarity=0.279  Sum_probs=35.5

Q ss_pred             eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEEEEE
Q 021491          248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVINCY  294 (311)
Q Consensus       248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F~v~  294 (311)
                      +.+.+..+|+||.|.+++.+|+++|+||.+....-.  ++...=+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            357888999999999999999999999998865432  23444444443

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=95.54  E-value=0.012  Score=44.30  Aligned_cols=67  Identities=18%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             EEEEEeCC-cccHHHHHHHHHHhCCCeEEEEEEEcc-----C----ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          118 ALELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTH-----N----GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       118 ~i~V~~~D-rpGLL~~I~~~L~~~glnI~~A~i~T~-----~----~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      +|+|.+.| +.|++++++++|+++|+||.+-+-.+.     +    ....-.|.|+.    .+.    ..+.++..|.+ 
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~----~~~----~~~~lr~~L~~-   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG----QPA----DLEALRAALLE-   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC----CCC----CHHHHHHHHHH-
Confidence            47899999 999999999999999999965444211     1    24455666664    222    23678888875 


Q ss_pred             hcCCCC
Q 021491          188 LKGDND  193 (311)
Q Consensus       188 L~~~~~  193 (311)
                      +..+.+
T Consensus        72 la~elg   77 (84)
T cd04871          72 LASELN   77 (84)
T ss_pred             HhcccC
Confidence            444444

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK08210 aspartate kinase I; Reviewed

Probab=95.51  E-value=0.85  Score=44.21  Aligned_cols=98  Identities=15%  Similarity=0.254  Sum_probs=64.3

Q ss_pred             eEEEEEEecCC-CcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCC
Q 021491           35 ATLVKVDSARR-HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSF  113 (311)
Q Consensus        35 ~t~V~V~~~Dr-pGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~  113 (311)
                      -..|+|...+. ||.++++..+|++.|+||.....+..  .  -.|++...        + .+...+.|..... .....
T Consensus       271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~--------~-~~~a~~~l~~~~~-~v~~~  336 (403)
T PRK08210        271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE--------D-SEKAKEILENLGL-KPSVR  336 (403)
T ss_pred             cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH--------H-HHHHHHHHHHhCC-cEEEe
Confidence            34556665444 99999999999999999997644322  1  23555421        1 1222333332210 01123


Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEE
Q 021491          114 NGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE  146 (311)
Q Consensus       114 ~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~  146 (311)
                      .+...|.|.+.   ++||+++++..+|++.|+||..
T Consensus       337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            46778888875   7999999999999999999974

>PRK06635 aspartate kinase; Reviewed

Probab=95.49  E-value=0.35  Score=46.86  Aligned_cols=106  Identities=15%  Similarity=0.196  Sum_probs=66.0

Q ss_pred             EEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcch
Q 021491          119 LELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRS  196 (311)
Q Consensus       119 i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~  196 (311)
                      |+|. ..++||+++++..+|+++|+||.....+... +...-.|.|..          +..+...+.|.+ +..+...  
T Consensus       265 Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~~--  331 (404)
T PRK06635        265 VTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIGA--  331 (404)
T ss_pred             EEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcCc--
Confidence            4444 3578999999999999999999965443222 23444555543          222333333333 1110100  


Q ss_pred             hhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEe---CCccchHHHHHHHhhcCCe
Q 021491          197 AKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQC---KDRTKLLFDVVCTLTDMEY  273 (311)
Q Consensus       197 ~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~---~DRpGLL~~I~~~l~~~gi  273 (311)
                                                            ..|++    ..+.+++.|.+   +|+||++++|.++|++.|+
T Consensus       332 --------------------------------------~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~I  369 (404)
T PRK06635        332 --------------------------------------ESVTY----DDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGI  369 (404)
T ss_pred             --------------------------------------ceEEE----cCCeEEEEEECCCCCCCchHHHHHHHHHHHCCC
Confidence                                                  11111    12355777765   6999999999999999999


Q ss_pred             EEEEEE
Q 021491          274 VVFHAT  279 (311)
Q Consensus       274 ~I~~A~  279 (311)
                      +|....
T Consensus       370 ni~~i~  375 (404)
T PRK06635        370 NIQMIS  375 (404)
T ss_pred             CEEEEE
Confidence            998853

>PRK06291 aspartate kinase; Provisional

Probab=95.36  E-value=0.78  Score=45.44  Aligned_cols=110  Identities=10%  Similarity=0.104  Sum_probs=71.8

Q ss_pred             eEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491           35 ATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN  111 (311)
Q Consensus        35 ~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~  111 (311)
                      ...|+|.+.   +.||+++++..+|+++|++|......+....  -.|.|...+     .+...+.|++.+....-..-.
T Consensus       321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d-----~~~av~~L~~~~~~~~~~~i~  393 (465)
T PRK06291        321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEAD-----LEKALKALRREFGEGLVRDVT  393 (465)
T ss_pred             EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHH-----HHHHHHHHHHHHHHhcCcceE
Confidence            456677654   7899999999999999999986544332221  235664311     123445555555431100011


Q ss_pred             CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491          112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT  151 (311)
Q Consensus       112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T  151 (311)
                      ...+...|.|.+.   +++|+.+++..+|.+.|+||..-...+
T Consensus       394 ~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        394 FDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS  436 (465)
T ss_pred             EeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence            2346778999985   799999999999999999998544433

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.22  E-value=0.074  Score=40.52  Aligned_cols=52  Identities=8%  Similarity=-0.057  Sum_probs=39.9

Q ss_pred             CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeE-EEEEEEEec
Q 021491          245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA-YLVINCYQF  296 (311)
Q Consensus       245 ~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a-~D~F~v~~~  296 (311)
                      ...|.|-+..+|+||-|+++...|+++|||+.+..-.-....- +=.|||.-.
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie   64 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD   64 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence            3446677777999999999999999999999999887655443 345666543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.05  E-value=0.09  Score=38.11  Aligned_cols=46  Identities=4%  Similarity=-0.149  Sum_probs=36.2

Q ss_pred             EEEeCCccchHHHHHHHhhcCCeEEEEEEEEec-CCeEEEEEEEEec
Q 021491          251 NVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLVINCYQF  296 (311)
Q Consensus       251 ~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~-g~~a~D~F~v~~~  296 (311)
                      -+..+|+||-|++|...|+++|+||.+..-.-. +....=.|||.-.
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~   49 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE   49 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence            345689999999999999999999999966543 4456666777655

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.84  E-value=0.086  Score=37.30  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEE
Q 021491           44 RRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT   82 (311)
Q Consensus        44 DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~   82 (311)
                      |+||.+.+++++|...|+||.+-.+..  .++..--++.+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~   41 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS   41 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe
Confidence            789999999999999999999999985  456655445554

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.81  E-value=0.41  Score=34.59  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=35.0

Q ss_pred             EEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          120 ELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       120 ~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      .+..+|+||-|+++...|+++|+||.+-.-.... ....-.|+|.-
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~   48 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF   48 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            4455899999999999999999999988655443 34555677775

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.73  E-value=0.25  Score=35.21  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=40.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      +.|.-+||||-|.+++..++. |.||...+-...+ +.+.-.+.+.. .      +++..+.+.+.|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-~------~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-P------DREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence            357789999999999999999 9999877665433 22222233332 1      24566777777664

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.71  E-value=0.03  Score=41.03  Aligned_cols=47  Identities=15%  Similarity=0.046  Sum_probs=36.4

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF  296 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~  296 (311)
                      |-+..+|+||-|+++...|+.+|+|+.+..-...+.. -+=.|||.-.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e   50 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE   50 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence            4455689999999999999999999999988765433 4455666543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.59  E-value=0.14  Score=53.36  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=43.8

Q ss_pred             EEEEcCCC-CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC--CeEEEEEEEE
Q 021491          237 VTVQNWAD-RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG--ERAYLVINCY  294 (311)
Q Consensus       237 V~id~~~s-~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g--~~a~D~F~v~  294 (311)
                      |+++...+ ...+.|.|.+.||+|||.+|+.++++.++||..+.+.+..  +.+.-.|-|.
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie  715 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE  715 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE
Confidence            45543322 2445899999999999999999999999999999998753  5555555443

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=94.52  E-value=0.097  Score=38.14  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      |+++++-||-.||+++-+|..+|+-|-+|+|...  +++-..++.+.-...+..+..+....++.+.+...|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999754  555555544433012223433333455555554443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=94.42  E-value=1.3  Score=43.78  Aligned_cols=107  Identities=14%  Similarity=0.142  Sum_probs=67.5

Q ss_pred             EEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHH-HHHHHHhhhccCCCC-
Q 021491           36 TLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI-SYIEQSLETIHYGRS-  110 (311)
Q Consensus        36 t~V~V~~---~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~-~~l~~~L~~~~~rr~-  110 (311)
                      +.|++..   ++++|+++++..+|+++|+||.-.   +.+. .--.|.|...+   .  +... ..+.+.|........ 
T Consensus       309 ~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~---~--~~a~~~~l~~el~~~~~~~~I  379 (454)
T PRK09034        309 TSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQ---L--TPKKEDEILAEIKQELNPDEL  379 (454)
T ss_pred             EEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHH---h--hHHHHHHHHHHHHHhhCCceE
Confidence            3455553   678999999999999999999874   2222 22347775421   1  1111 222223332111000 


Q ss_pred             CCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491          111 NSFNGLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (311)
Q Consensus       111 ~~~~~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T  151 (311)
                      ....+...|.+.+   .++||+++++..+|++.|+||......+
T Consensus       380 ~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        380 EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            2244677889976   4789999999999999999998665444

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.41  E-value=0.24  Score=51.58  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=49.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      -...|.|.+.||+|+|++|+.+++..++||.+..+.+.  ++.+...|.|.- .      +..++..+-..|.+
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-~------~~~~L~~l~~~L~~  731 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-Y------NLQVLGRVLGKLNQ  731 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-C------CHHHHHHHHHHHhc
Confidence            44588999999999999999999999999999998775  466666666654 1      23556666666553

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.31  E-value=0.038  Score=40.33  Aligned_cols=47  Identities=6%  Similarity=-0.050  Sum_probs=35.9

Q ss_pred             EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491          250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF  296 (311)
Q Consensus       250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~  296 (311)
                      |-+..+|+||-|+++...|+.+|||+.+..-.-...+ -+=.|||.-.
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~   50 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE   50 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence            4455689999999999999999999999888765443 3445656543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK07334 threonine dehydratase; Provisional

Probab=94.31  E-value=0.18  Score=49.01  Aligned_cols=37  Identities=14%  Similarity=0.182  Sum_probs=34.5

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA  283 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~  283 (311)
                      .+.|+|.+.||||+|.+|+++|++.++||.+....+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~  362 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL  362 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence            4689999999999999999999999999999998865

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=94.23  E-value=0.067  Score=37.99  Aligned_cols=47  Identities=13%  Similarity=0.187  Sum_probs=35.9

Q ss_pred             ceeEEEEEeC----CccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491          246 SYSVVNVQCK----DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFD  297 (311)
Q Consensus       246 ~~tvl~v~~~----DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~  297 (311)
                      ++..+.|.++    |.||+++++..+|++.||+|....  |+   -.|.|.|...+
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~~~   55 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKEED   55 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEGGG
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeHHH
Confidence            4667888877    899999999999999999998877  43   24556665543

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.04  E-value=1.7  Score=41.97  Aligned_cols=107  Identities=13%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             CeEEEEEE---eCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          115 GLTALELT---GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       115 ~~t~i~V~---~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      +...|+|.   ..+++|+++++..+|.++|++|..-......  ..-.|.|..          +..++..+.|++.+.. 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~----------~d~~~a~~~L~~~~~~-  325 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE----------TDADEAVRALKDQSGA-  325 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence            34467777   4678999999999999999999754332111  222355532          2223333334332211 


Q ss_pred             CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHh
Q 021491          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTL  268 (311)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l  268 (311)
                      ..                            +            ..+.++    .+.+++.|.+.   ++||+++++.++|
T Consensus       326 ~~----------------------------~------------~~i~~~----~~~a~IsvVG~~~~~~~g~~a~i~~~L  361 (401)
T TIGR00656       326 AG----------------------------L------------DRVEVE----EGLAKVSIVGAGMVGAPGVASEIFSAL  361 (401)
T ss_pred             cC----------------------------C------------ceEEEe----CCeEEEEEECCCcccCccHHHHHHHHH
Confidence            00                            0            111211    24567777764   7999999999999


Q ss_pred             hcCCeEEEEE
Q 021491          269 TDMEYVVFHA  278 (311)
Q Consensus       269 ~~~gi~I~~A  278 (311)
                      ++.|+||...
T Consensus       362 ~~~gIni~~i  371 (401)
T TIGR00656       362 EEKNINILMI  371 (401)
T ss_pred             HHCCCcEEEE
Confidence            9999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.68  E-value=0.064  Score=40.21  Aligned_cols=61  Identities=16%  Similarity=0.080  Sum_probs=42.0

Q ss_pred             EEEEEecC-CCcHHHHHHHHHHhCCceEEEEEEEEc---------CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           37 LVKVDSAR-RHGILLEAVQVLTDLNLLIKKAYISSD---------GRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        37 ~V~V~~~D-rpGL~~~i~~~L~~~glnI~~A~i~t~---------~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      .|+|.++| ..|++++++.+|+++|+||.+-+-.+.         .+...-.|.|..   .+.+.+.+++.|..
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~---~~~~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG---QPADLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC---CCCCHHHHHHHHHH
Confidence            38999999 999999999999999999986555321         123444577753   32333455555553

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.68  E-value=0.29  Score=43.16  Aligned_cols=53  Identities=15%  Similarity=0.148  Sum_probs=42.5

Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEE
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVK  163 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~  163 (311)
                      +..+....+-+.-.|+||.+.+++..|.++|+||...++...  ++.+.-+..+.
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD  197 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID  197 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence            334455667788899999999999999999999999999875  56776555553

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PLN02551 aspartokinase

Probab=93.64  E-value=4.8  Score=40.52  Aligned_cols=136  Identities=15%  Similarity=0.205  Sum_probs=78.7

Q ss_pred             eEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-CC
Q 021491           35 ATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-RS  110 (311)
Q Consensus        35 ~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-r~  110 (311)
                      .+.|+|.+.   +.+|+++++...|+++|++|.--  .+..  .--.|.+...+-..  .+.+.+.+++.+.+.... +-
T Consensus       366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~~~~~V  439 (521)
T PLN02551        366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWS--RELIQQELDHLVEELEKIAVV  439 (521)
T ss_pred             eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhhcCCeE
Confidence            345666544   68999999999999999999865  2222  12246665422110  011222222222111100 01


Q ss_pred             CCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          111 NSFNGLTALELTGT--DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       111 ~~~~~~t~i~V~~~--DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      ....+...|.|++.  ..+|+++++..+|++.|+||..-...+.  ..--.|.|..          +..++.-+.|++.+
T Consensus       440 ~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS--einIS~vV~~----------~d~~~Av~aLH~~F  507 (521)
T PLN02551        440 NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS--KVNISLIVND----------DEAEQCVRALHSAF  507 (521)
T ss_pred             EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC--CcEEEEEEeH----------HHHHHHHHHHHHHH
Confidence            12346778888864  6899999999999999999986555443  1222355543          23344455556544

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.62  E-value=0.27  Score=51.13  Aligned_cols=55  Identities=7%  Similarity=0.020  Sum_probs=42.1

Q ss_pred             EEEEcCCC-CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCC-eEEEEE
Q 021491          237 VTVQNWAD-RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLVI  291 (311)
Q Consensus       237 V~id~~~s-~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~-~a~D~F  291 (311)
                      |.++...+ .-.+.|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~  671 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFI  671 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEE
Confidence            45543322 23558999999999999999999999999999999988753 444344

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.60  E-value=1.4  Score=33.55  Aligned_cols=49  Identities=10%  Similarity=0.195  Sum_probs=38.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~  164 (311)
                      .+.+.+..+|+||-|+++...|+.+|+|+..-.-.-. +....-.|||.-
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi   63 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL   63 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            4556666699999999999999999999987776654 334456788875

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.58  E-value=0.42  Score=49.73  Aligned_cols=64  Identities=11%  Similarity=0.196  Sum_probs=48.5

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (311)
                      -...|.|.+.||+|+|++|+.+++..++||.+....+.+ +.+...|.|.- .      +.+++..|-..|.
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-~------~~~~L~~i~~~Lr  689 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-R------DRVHLANIMRKIR  689 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-C------CHHHHHHHHHHHh
Confidence            355889999999999999999999999999999987764 45555566654 1      2355555655554

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.46  E-value=0.27  Score=41.51  Aligned_cols=46  Identities=13%  Similarity=0.345  Sum_probs=37.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-c-eEEEEEEEE
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-G-RIASLIYVK  163 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~-~~~d~F~V~  163 (311)
                      -+.+.+.++||.|.++++.++++|.||..++.+..+ | .+.-.|.+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence            367889999999999999999999999999999874 3 444444444

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.38  E-value=0.29  Score=41.33  Aligned_cols=45  Identities=9%  Similarity=0.033  Sum_probs=37.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCC-EEEEEEEE
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGR-FFMDVFHV   81 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g-~~~d~f~v   81 (311)
                      -+.+.+.++||.|.++++.+++.|.||.-|+.+. .+| ...--|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            4788999999999999999999999999999996 455 44433444

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.35  E-value=0.34  Score=50.33  Aligned_cols=48  Identities=19%  Similarity=0.264  Sum_probs=39.2

Q ss_pred             EEEEcC-CCCceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491          237 VTVQNW-ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG  284 (311)
Q Consensus       237 V~id~~-~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g  284 (311)
                      |.++.. .+...+.|.|.+.||+|+|.+|+.++++.++||.++.+.+..
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~  647 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG  647 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence            445433 223455899999999999999999999999999999998874

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=93.31  E-value=2.8  Score=44.56  Aligned_cols=111  Identities=13%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC--
Q 021491           34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--  108 (311)
Q Consensus        34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r--  108 (311)
                      +...|+|.+.   .+||+++++..+|+++|++|......+ +..- -.|.|...+.     +...+.|++.+......  
T Consensus       314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~~  386 (819)
T PRK09436        314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKEGL  386 (819)
T ss_pred             CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccCC
Confidence            4456777654   689999999999999999997554433 2222 2466653211     23344455444322110  


Q ss_pred             -C-CCCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491          109 -R-SNSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT  151 (311)
Q Consensus       109 -r-~~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T  151 (311)
                       . -....+...|.|.+.   ++||+++++..+|.+.|+||..-...+
T Consensus       387 ~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs  434 (819)
T PRK09436        387 LEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS  434 (819)
T ss_pred             cceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence             0 122356788999986   789999999999999999998654433

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=93.28  E-value=0.25  Score=50.93  Aligned_cols=55  Identities=16%  Similarity=0.098  Sum_probs=43.9

Q ss_pred             EEEEcCC-CCceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEE
Q 021491          237 VTVQNWA-DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVI  291 (311)
Q Consensus       237 V~id~~~-s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F  291 (311)
                      |.++++. ....+.|.|.+.||+|||.+|+.+|++.++||.+....+.+++..++.
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~  671 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ  671 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence            5555553 345668999999999999999999999999999999988655544443

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.25  E-value=0.22  Score=39.74  Aligned_cols=49  Identities=8%  Similarity=-0.011  Sum_probs=38.4

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEE-EEEEEe
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL-VINCYQ  295 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D-~F~v~~  295 (311)
                      .|.|-+..+|+||-|+++...|+.+|||+.+..-...+..-.+ .|||.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            4566666799999999999999999999999988877555443 444543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=93.09  E-value=0.43  Score=33.81  Aligned_cols=46  Identities=22%  Similarity=0.416  Sum_probs=35.5

Q ss_pred             CCeEEEEEEeC----CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          114 NGLTALELTGT----DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       114 ~~~t~i~V~~~----DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      .+...|+|.++    |.||+++++.+.|++.|+||....  |.   ..+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence            35667888887    799999999999999999998766  33   355666664

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.95  E-value=0.66  Score=32.94  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=27.6

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE
Q 021491           38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS   70 (311)
Q Consensus        38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t   70 (311)
                      +.|.-||+||-|.+++.+++. |.||..-.-..
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~   32 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRN   32 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence            357889999999999999999 99999876543

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.94  E-value=0.69  Score=48.08  Aligned_cols=64  Identities=16%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (311)
                      -.+.|.|.+.||+|+|++|+.+++..++||.+.++.+.. +.+.-.|.|.-       .+-.++..|-..|.
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~  673 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIK  673 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            456889999999999999999999999999999998763 55555555553       12355555555544

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>TIGR00657 asp_kinases aspartate kinase

Probab=92.79  E-value=5  Score=39.35  Aligned_cols=107  Identities=18%  Similarity=0.221  Sum_probs=64.9

Q ss_pred             eEEEEEEecC-C-CcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCC
Q 021491           35 ATLVKVDSAR-R-HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNS  112 (311)
Q Consensus        35 ~t~V~V~~~D-r-pGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~  112 (311)
                      ...|+|.+.+ . +|+++++..+|+++|++|......+.. .. -.|.|...+ .    +...+.|........-..-..
T Consensus       302 v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~-~----~~a~~~L~~~~~~~~~~~I~~  374 (441)
T TIGR00657       302 QARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKED-A----DQAKTLLKSELNLSALSSVEV  374 (441)
T ss_pred             EEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHH-H----HHHHHHHHHHHHhcCcceEEE
Confidence            3345555432 3 799999999999999999866533322 11 235564321 0    122222322111111000123


Q ss_pred             CCCeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEE
Q 021491          113 FNGLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAK  148 (311)
Q Consensus       113 ~~~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~  148 (311)
                      ..+...|+|.+   .+.||+++++..+|++.|+||....
T Consensus       375 ~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       375 EKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             cCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            44677888875   4789999999999999999997664

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09181 aspartate kinase; Validated

Probab=92.70  E-value=5.6  Score=39.58  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491           34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (311)
Q Consensus        34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~  110 (311)
                      +.+.|+|.+.   +.+|+.+++..+|++.|++|.  -+.+..  .--.|.|...  . -..+++.+.|++.+....   -
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-~~~~~~~~~L~~~~~~~~---i  397 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-KTLKRVIAELEKRYPNAE---V  397 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-HHHHHHHHHHHHhcCCce---E
Confidence            3445566433   689999999999999999998  233322  2224666432  1 001223333333221110   0


Q ss_pred             CCCCCeEEEEEEeCC--cccHHHHHHHHHHhCCCeEEEEEEE
Q 021491          111 NSFNGLTALELTGTD--RVGLLSEVFAVLADLQCSVVEAKVW  150 (311)
Q Consensus       111 ~~~~~~t~i~V~~~D--rpGLL~~I~~~L~~~glnI~~A~i~  150 (311)
                      . ..+...|.|++..  +||+.+++..+|.+.|+||..-...
T Consensus       398 ~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        398 T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence            1 2567889999865  8999999999999999999754444

>PRK06291 aspartate kinase; Provisional

Probab=92.62  E-value=4.7  Score=39.94  Aligned_cols=112  Identities=13%  Similarity=0.170  Sum_probs=70.3

Q ss_pred             CeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       115 ~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      +...|+|.+.   +.+|+++++..+|+++|+||......+..  ..-.|.|..          +..+...+.|.+.+...
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~----------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE----------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHHh
Confidence            3466777764   78999999999999999999875443322  222344443          22233333344333221


Q ss_pred             CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHh
Q 021491          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTL  268 (311)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l  268 (311)
                      .                                         ...|++.    .+..+|.|.+.   ++||++.++..+|
T Consensus       388 ~-----------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~rif~aL  422 (465)
T PRK06291        388 L-----------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAGRIFSAL  422 (465)
T ss_pred             c-----------------------------------------CcceEEe----CCEEEEEEEcCCccCCcChHHHHHHHH
Confidence            0                                         0111221    23567888775   7999999999999


Q ss_pred             hcCCeEEEEEEEEec
Q 021491          269 TDMEYVVFHATINTA  283 (311)
Q Consensus       269 ~~~gi~I~~A~I~T~  283 (311)
                      ++.||+|....-.+.
T Consensus       423 ~~~~I~v~~isqgsS  437 (465)
T PRK06291        423 GESGINIKMISQGSS  437 (465)
T ss_pred             HHCCCCEEEEEeccc
Confidence            999999986554443

>PRK11899 prephenate dehydratase; Provisional

Probab=92.55  E-value=0.4  Score=44.23  Aligned_cols=49  Identities=4%  Similarity=-0.036  Sum_probs=38.8

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeE-EEEEEEEe
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA-YLVINCYQ  295 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a-~D~F~v~~  295 (311)
                      .|.|-+..+|+||.||++...|+++|||+.+..-.-.+.+- +=.|||.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            46666667899999999999999999999999988665454 44566543

>PRK06382 threonine dehydratase; Provisional

Probab=92.32  E-value=2.7  Score=40.80  Aligned_cols=65  Identities=25%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE----cc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW----TH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~----T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..+.+.|.-+|+||-|.+++..|.++|+||.+....    .. .+...-+|.|.. .      +++..+.|.+.|.+
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet-~------~~~~~~~v~~~L~~  398 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV-R------GQDHLDRILNALRE  398 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence            467899999999999999999999999999877664    12 345555676765 1      13454566666654

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.22  E-value=1.5  Score=31.73  Aligned_cols=46  Identities=11%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      +.+..+|+||-|+++...|+.+|+|+..-.-.... ....-.|+|.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            44455899999999999999999999876665543 34556788875

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=92.17  E-value=1.6  Score=31.77  Aligned_cols=46  Identities=17%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491          119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (311)
Q Consensus       119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~  164 (311)
                      +.+..+|+||-|+++...|+.+|+|+..-.-... +....-.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            3445589999999999999999999987776655 344556788875

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.93  E-value=0.76  Score=47.47  Aligned_cols=66  Identities=23%  Similarity=0.295  Sum_probs=47.6

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc-eEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLR  185 (311)
Q Consensus       113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~-~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  185 (311)
                      ..-.+.|.|.+.||+|+|++|+.+|+..++||......+.++ .+.-.|.+.-       .+-.++..|-..|.
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~  690 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK  690 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999988643 3444444443       12345555555444

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.84  E-value=1.7  Score=32.40  Aligned_cols=61  Identities=11%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ++.|.-+|+||-|++++.+|+  +.||....-... .+.+.-.+.+.. . +.    ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~-~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-A-NG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-C-Cc----HHHHHHHHHHHHH
Confidence            577888999999999999999  556664333322 233443444444 1 10    3566777777765

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.79  E-value=0.39  Score=46.80  Aligned_cols=49  Identities=18%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEE
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK  163 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~  163 (311)
                      ....|.+.-.|+||.+++|+..|+++|+||...+..+.++.+..++-+.
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D  385 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD  385 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence            5677888999999999999999999999999999998888888777554

>PRK12483 threonine dehydratase; Reviewed

Probab=91.62  E-value=9.9  Score=38.30  Aligned_cols=138  Identities=12%  Similarity=0.108  Sum_probs=80.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC-----
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY-----  107 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~-----  107 (311)
                      ....+.|.-|||||-|.+++.+|...  ||.+-.-.. ..+.+- ++....-.+.    +...+.|...|.....     
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~dl  416 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHPR----HDPRAQLLASLRAQGFPVLDL  416 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCCh----hhhHHHHHHHHHHCCCCeEEC
Confidence            45678899999999999999999988  888665543 223322 2322222221    2233556666654321     


Q ss_pred             ----------C-----CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCC
Q 021491          108 ----------G-----RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE  172 (311)
Q Consensus       108 ----------r-----r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~  172 (311)
                                |     |+.....--.+.|.-|.|||-|.+++..|... .||..-+=.-.+.....+|.=-.      +.
T Consensus       417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~vgi~------~~  489 (521)
T PRK12483        417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLAGLQ------VP  489 (521)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEEEEe------eC
Confidence                      1     12223344578888999999999999999852 34544433323443333442111      11


Q ss_pred             ChHHHHHHHHHHHH
Q 021491          173 DSQQIDRIEARLRN  186 (311)
Q Consensus       173 ~~~~~~~l~~~L~~  186 (311)
                      + +..+.+.+.|.+
T Consensus       490 ~-~~~~~~~~~l~~  502 (521)
T PRK12483        490 E-DERAALDAALAA  502 (521)
T ss_pred             h-hHHHHHHHHHHH
Confidence            1 334667777665

>PRK08210 aspartate kinase I; Reviewed

Probab=91.51  E-value=3.8  Score=39.72  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=61.9

Q ss_pred             eEEEEEEeCCc-ccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 021491          116 LTALELTGTDR-VGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI  194 (311)
Q Consensus       116 ~t~i~V~~~Dr-pGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (311)
                      ...++|...+. ||.+++|...|+++|+||.....+.  .  .-.|.+..          +..+++.+.|.+ + + .. 
T Consensus       271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~----------~~~~~a~~~l~~-~-~-~~-  332 (403)
T PRK08210        271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD----------EDSEKAKEILEN-L-G-LK-  332 (403)
T ss_pred             cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH----------HHHHHHHHHHHH-h-C-Cc-
Confidence            44556665444 9999999999999999998774432  1  12344432          222333333332 1 0 00 


Q ss_pred             chhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHhhcC
Q 021491          195 RSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTLTDM  271 (311)
Q Consensus       195 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l~~~  271 (311)
                                                                +.+    ..+.+++.|.+.   ++||++.++.++|++.
T Consensus       333 ------------------------------------------v~~----~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~  366 (403)
T PRK08210        333 ------------------------------------------PSV----RENCAKVSIVGAGMAGVPGVMAKIVTALSEE  366 (403)
T ss_pred             ------------------------------------------EEE----eCCcEEEEEEcCCcCCCccHHHHHHHHHHhC
Confidence                                                      011    113456666664   8999999999999999


Q ss_pred             CeEEEE
Q 021491          272 EYVVFH  277 (311)
Q Consensus       272 gi~I~~  277 (311)
                      |++|..
T Consensus       367 ~I~i~~  372 (403)
T PRK08210        367 GIEILQ  372 (403)
T ss_pred             CCCEEE
Confidence            999975

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=91.45  E-value=0.55  Score=43.20  Aligned_cols=55  Identities=2%  Similarity=-0.020  Sum_probs=44.0

Q ss_pred             ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCe
Q 021491          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNY  300 (311)
Q Consensus       246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~  300 (311)
                      ..|.|-+..+|+||-|+++...|+.+|||+.+..-.-.+..-.+-+|.-|-+|+.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCc
Confidence            4777888888999999999999999999999999986666655555555555543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=91.35  E-value=0.41  Score=45.97  Aligned_cols=51  Identities=10%  Similarity=-0.079  Sum_probs=38.4

Q ss_pred             ceeEEEEEeC-CccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491          246 SYSVVNVQCK-DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFD  297 (311)
Q Consensus       246 ~~tvl~v~~~-DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~  297 (311)
                      ..+.+.+.-+ |+||-|++|+..|+++||||.+..+ ....--+-.|||.-.+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence            3556777776 9999999999999999999999999 3332233338776554

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=91.34  E-value=16  Score=36.08  Aligned_cols=107  Identities=13%  Similarity=0.205  Sum_probs=68.7

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491           34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (311)
Q Consensus        34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~  110 (311)
                      +...|+|...   ..+|..+++.+.|+.+|+||.--........  -.|++...+.     +...+.+++....... +-
T Consensus       306 ~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~v  377 (447)
T COG0527         306 NVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-EV  377 (447)
T ss_pred             CeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-eE
Confidence            4445555532   3459999999999999999975444322222  3477753211     2344444444432211 00


Q ss_pred             CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEE
Q 021491          111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (311)
Q Consensus       111 ~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~  148 (311)
                      ....+.-.|.+++.   ..||..+++..+|++.|+||....
T Consensus       378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence            12446677888874   688999999999999999999776

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.20  E-value=1.1  Score=39.44  Aligned_cols=48  Identities=8%  Similarity=0.209  Sum_probs=40.0

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEE
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHV   81 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v   81 (311)
                      ....+.+.-.|+||...+++.+|.++|+||...++..  .+|.++-+..+
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            3456677789999999999999999999999999985  56778755555

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.49  E-value=6.5  Score=41.88  Aligned_cols=116  Identities=15%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          114 NGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       114 ~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      .+...|+|.+.   ++||+++++..+|+++|++|......+..  ..-.|.|..          +..+.....|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~----------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQ----------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence            45667888764   68999999999999999999766544322  222455543          1223333333332211


Q ss_pred             CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHH
Q 021491          191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCT  267 (311)
Q Consensus       191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~  267 (311)
                      +...                   +                  ....|++.    .+..+|.|.+.   ++||++.++.++
T Consensus       381 el~~-------------------~------------------~~~~i~~~----~~valIsvvG~gm~~~~gv~arif~a  419 (819)
T PRK09436        381 ELKE-------------------G------------------LLEPLEVE----ENLAIISVVGDGMRTHPGIAAKFFSA  419 (819)
T ss_pred             Hhcc-------------------C------------------CcceEEEe----CCEEEEEEEccCcccCcCHHHHHHHH
Confidence            1100                   0                  01122222    24667888776   789999999999


Q ss_pred             hhcCCeEEEEEEEEe
Q 021491          268 LTDMEYVVFHATINT  282 (311)
Q Consensus       268 l~~~gi~I~~A~I~T  282 (311)
                      |.+.||+|....-.+
T Consensus       420 L~~~~InI~~Isqgs  434 (819)
T PRK09436        420 LGRANINIVAIAQGS  434 (819)
T ss_pred             HHHCCCCEEEEEecc
Confidence            999999998764333

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=90.42  E-value=0.79  Score=41.25  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=33.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH  152 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~  152 (311)
                      ...+|.+...|-||.|++|+++|+..|.||.+.-+--.
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t  113 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT  113 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech
Confidence            45679999999999999999999999999998877644

>PRK09084 aspartate kinase III; Validated

Probab=90.42  E-value=13  Score=36.67  Aligned_cols=103  Identities=17%  Similarity=0.263  Sum_probs=62.8

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491           34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (311)
Q Consensus        34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~  110 (311)
                      +...|+|.+.   +.+|+++++...|+++|+||.--.  +. . .--+|.|...+-.......+.+.+.+.|.....  -
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss-e-~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~--i  378 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS-E-VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR--V  378 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc-C-cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe--E
Confidence            3446667644   689999999999999999998654  22 2 223466654221100001122333333432110  1


Q ss_pred             CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCC
Q 021491          111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQC  142 (311)
Q Consensus       111 ~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~gl  142 (311)
                      ....+...|.|.+.   ++||+.+++..+|.+.++
T Consensus       379 ~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        379 EVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             EEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence            12346788999986   799999999999987543

>PRK09224 threonine dehydratase; Reviewed

Probab=90.33  E-value=9.8  Score=38.15  Aligned_cols=109  Identities=14%  Similarity=0.112  Sum_probs=68.4

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC-----
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY-----  107 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~-----  107 (311)
                      ....+.|.-|||||-|.+++.+|.  +.||..-.-.-.+ +.+ .+|......+.    +.-.+.|.+.|.....     
T Consensus       327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a-~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l  399 (504)
T PRK09224        327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEA-HIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL  399 (504)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeE-EEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence            345788999999999999999999  6888765543322 322 23333222221    1113444455544321     


Q ss_pred             ----------C-----CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491          108 ----------G-----RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW  150 (311)
Q Consensus       108 ----------r-----r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~  150 (311)
                                |     |+....+--.+.|.-|.|||-|-+++..|. -+.||..-+=.
T Consensus       400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence                      1     221222445688889999999999999776 77888877764

>PRK09034 aspartate kinase; Reviewed

Probab=90.08  E-value=9.3  Score=37.74  Aligned_cols=37  Identities=5%  Similarity=0.101  Sum_probs=30.1

Q ss_pred             ceeEEEEEe---CCccchHHHHHHHhhcCCeEEEEEEEEe
Q 021491          246 SYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINT  282 (311)
Q Consensus       246 ~~tvl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~I~T  282 (311)
                      +...|.|.+   .++||+++++-.+|++.||+|....-.+
T Consensus       384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            355777755   3899999999999999999998886544

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=89.94  E-value=1.1  Score=37.75  Aligned_cols=66  Identities=20%  Similarity=0.285  Sum_probs=46.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      .-++.+.-.|.||.|+++++.|++.|+||.+-.+.-. .....-+-.+..   |    |+..++++.+.|....
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLi   70 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLI   70 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhc
Confidence            3467888999999999999999999999999888754 222322222332   2    1245677777777643

>PRK06545 prephenate dehydrogenase; Validated

Probab=89.87  E-value=1.4  Score=42.12  Aligned_cols=52  Identities=15%  Similarity=0.238  Sum_probs=42.1

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      .+..+.|.|.-+|+||-+++|+..|...|+||.+-+|.-..+...-++.++-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            4567899999999999999999999999999999999765444444444443

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=89.62  E-value=8.6  Score=36.85  Aligned_cols=65  Identities=20%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-----cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-----HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-----~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ....+.|.-+|+||.|++++..+++.|.||.+-.-..     ..+.+.-.+.+.. .      +++..+.|.+.|.+
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet-~------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET-R------GKEHLDEILKILRD  373 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence            3457899999999999999999999999998775442     1245554555554 1      13555667776654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.50  E-value=0.65  Score=45.24  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      +...+.+.-+|+||.+++|+..|+++|+||..-++.+.+++++-+|-+.   +. + ++++.+.|++
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D---~~-~-~~~~~~~i~~  398 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD---AD-Y-AEEALDALKA  398 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC---CC-C-cHHHHHHHHc
Confidence            5678888999999999999999999999999999988888888666553   32 2 2456666653

>PRK08198 threonine dehydratase; Provisional

Probab=88.99  E-value=4  Score=39.50  Aligned_cols=67  Identities=19%  Similarity=0.332  Sum_probs=46.4

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-----CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ......+.|.-+|+||-|+++...+++.|.||.+-.....     .+.+.-.+.|..   .    +++..+.|.+.|++
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~---~----~~~~~~~l~~~L~~  395 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET---R----GPEHIEEILDALRD  395 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe---C----CHHHHHHHHHHHHH
Confidence            3455689999999999999999999999999998876532     233333333332   1    24555666666654

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=88.85  E-value=0.62  Score=41.92  Aligned_cols=44  Identities=11%  Similarity=0.091  Sum_probs=36.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEE
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMD   77 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d   77 (311)
                      ....+.+...|.||.+.+|+|+|+..|+||.+--+--+....+.
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~Ls  119 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALS  119 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhh
Confidence            34578999999999999999999999999998888644444443

>PRK11899 prephenate dehydratase; Provisional

Probab=88.73  E-value=3.2  Score=38.34  Aligned_cols=64  Identities=16%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      .|.|-+..+|+||.|+++.+.|+.+|+|+..-.-.-. ++...=+|||.-  +|.. .+    ..++++|.+
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~~-~d----~~v~~aL~~  258 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGHP-ED----RNVALALEE  258 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECCC-CC----HHHHHHHHH
Confidence            4666666789999999999999999999987777655 344566899986  3543 23    235555554

>PRK06382 threonine dehydratase; Provisional

Probab=88.70  E-value=3.5  Score=40.08  Aligned_cols=51  Identities=16%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE----E-cCCEEEEEEEEEe
Q 021491           33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS----S-DGRFFMDVFHVTD   83 (311)
Q Consensus        33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~----t-~~g~~~d~f~v~~   83 (311)
                      +..+.+.|..+|+||-|.+++..|.++|+||.+....    . ..+...-+|.|..
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet  383 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV  383 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe
Confidence            3457889999999999999999999999999987664    1 2355555677754

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.43  E-value=1.2  Score=43.64  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=40.5

Q ss_pred             ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEec
Q 021491          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQF  296 (311)
Q Consensus       246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~  296 (311)
                      ..+.+.+...|+||.|++|+..|.++|++|.+..-....+....++++++.
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~  397 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE  397 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence            345799999999999999999999999999988665433345566667763

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=88.17  E-value=3.4  Score=32.88  Aligned_cols=49  Identities=10%  Similarity=0.099  Sum_probs=37.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      .+.+-+..+|+||-|+++...|+.+|+|+..-.-.... ....-.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            45566666999999999999999999999877666553 33445677775

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=87.87  E-value=20  Score=35.18  Aligned_cols=34  Identities=9%  Similarity=0.020  Sum_probs=28.7

Q ss_pred             ceeEEEEEe---CCccchHHHHHHHhhcCCeEEEEEE
Q 021491          246 SYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHAT  279 (311)
Q Consensus       246 ~~tvl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~  279 (311)
                      +.+.+.|.+   .++||++++|.++|++.|++|....
T Consensus       377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            455777755   4889999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=87.85  E-value=3.5  Score=38.01  Aligned_cols=65  Identities=17%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..|.+-+..+|+||-|+++.+.|+.+|+|+..-...-.. +-..-+|||.-  +|.. .+    ..++++|.+
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~-~~----~~v~~AL~e  258 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI-DD----PLVKEALEE  258 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc-Cc----HhHHHHHHH
Confidence            467777888899999999999999999998766665444 45566788876  3443 22    345566555

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.46  E-value=5.7  Score=29.45  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=25.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS   69 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~   69 (311)
                      .+.|.-||+||=|.+++.+|+  +.||....-.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~   33 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYR   33 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence            477889999999999999999  7777744443

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=87.42  E-value=0.94  Score=43.23  Aligned_cols=40  Identities=18%  Similarity=0.148  Sum_probs=35.5

Q ss_pred             CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491          245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG  284 (311)
Q Consensus       245 ~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g  284 (311)
                      ..++.|.|.-+||||-|++|+..|.+.||||.+.+|.-..
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~  327 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAR  327 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeecc
Confidence            3567899999999999999999999999999999995433

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=87.38  E-value=5.9  Score=27.56  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=25.8

Q ss_pred             EEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491          119 LELT-GTDRVGLLSEVFAVLADLQCSVVEAKVW  150 (311)
Q Consensus       119 i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~  150 (311)
                      |+|. .+|+||.++++.+.|++.|+||......
T Consensus         4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~   36 (75)
T cd04913           4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQN   36 (75)
T ss_pred             EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence            4443 4799999999999999999999855443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=86.97  E-value=1.8  Score=41.92  Aligned_cols=50  Identities=4%  Similarity=-0.045  Sum_probs=39.0

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF  296 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~  296 (311)
                      .|.|-+..+|+||.|+++...|+..|||+.+..-.-.+.+ -+=.|||.-.
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e  347 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ  347 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe
Confidence            5556677789999999999999999999999988844444 5555666444

>PRK06349 homoserine dehydrogenase; Provisional

Probab=86.40  E-value=3.8  Score=40.12  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      ...+.|.+...|+||.|++|++.|.++|+||.+.......+....++.++.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            345789999999999999999999999999998766554434455666665

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=86.38  E-value=46  Score=35.51  Aligned_cols=103  Identities=14%  Similarity=0.089  Sum_probs=64.2

Q ss_pred             eEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491           35 ATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN  111 (311)
Q Consensus        35 ~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~  111 (311)
                      ...|+|.+.   +.||.++++..+|+++|++|.--...+.+.  .-.|.+...  .   .+...+.|++ +....  +-.
T Consensus       317 v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~~--~---~~~~~~~l~~-~~~~~--~i~  386 (810)
T PRK09466        317 VCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTSE--V---ADSALKLLDD-AALPG--ELK  386 (810)
T ss_pred             EEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeHH--H---HHHHHHHHHh-hcCCC--cEE
Confidence            345566654   778999999999999999997554332322  223555421  1   1222233332 11111  001


Q ss_pred             CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEE
Q 021491          112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                      ...+...|.|++.   .++|+.+++..+|.+.|+++..-
T Consensus       387 v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~  425 (810)
T PRK09466        387 LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ  425 (810)
T ss_pred             EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence            2346778999984   68999999999999999998543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=86.32  E-value=2.1  Score=43.06  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=39.4

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEE
Q 021491          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYV  162 (311)
Q Consensus       113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V  162 (311)
                      ......+-+.-.|+||.++.++..|.++|+||...++...  |+.+.-++.+
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            3345556667799999999999999999999999999864  4666655544

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=86.02  E-value=28  Score=37.32  Aligned_cols=102  Identities=16%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             eEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491           35 ATLVKVD---SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN  111 (311)
Q Consensus        35 ~t~V~V~---~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~  111 (311)
                      ...|+|.   ..+.+|+++++...|+++|++|.--  .+. . .--+|.+.+.+.  .......+.+...|.....  -.
T Consensus       322 v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e-~sis~~i~~~~~--~~~~~~~~~l~~~l~~~~~--i~  393 (861)
T PRK08961        322 IVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-E-TNVTVSLDPSEN--LVNTDVLAALSADLSQICR--VK  393 (861)
T ss_pred             EEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-C-CEEEEEEccccc--cchHHHHHHHHHHHhhcCc--EE
Confidence            4456664   3468999999999999999999744  222 2 112355543221  1011223333333432110  01


Q ss_pred             CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeE
Q 021491          112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSV  144 (311)
Q Consensus       112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI  144 (311)
                      ...+...|.|++.   .+||+.+++..+|++.|+++
T Consensus       394 ~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        394 IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence            2235678999985   78999999999999987544

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=85.92  E-value=71  Score=36.56  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=108.2

Q ss_pred             eEEEEecCCCCeEEEEEEecC-C--CcHHHHHHHHHHhC-CceEEEEEE-EEcCCEEEEEEEEEeCCCCC--CCcHHHHH
Q 021491           24 RVVIDNAVCPTATLVKVDSAR-R--HGILLEAVQVLTDL-NLLIKKAYI-SSDGRFFMDVFHVTDLNGNK--LTDESVIS   96 (311)
Q Consensus        24 ~V~~~~~~~~~~t~V~V~~~D-r--pGL~~~i~~~L~~~-glnI~~A~i-~t~~g~~~d~f~v~~~~g~~--~~~~~~~~   96 (311)
                      .+.++.++.+.+.-+.|+.|- +  ..+-.+|-..|.+. +....+-.. ++.+..+.--|++....+..  ++...+.+
T Consensus       330 Rlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~le~  409 (1528)
T PF05088_consen  330 RLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEALEA  409 (1528)
T ss_pred             eEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHHHH
Confidence            455566667777777777653 3  34677888877664 334433343 34666777678887665554  33334444


Q ss_pred             HHHHHhhh-----------cc---C----------------C-----------------------------CC-CCCCCe
Q 021491           97 YIEQSLET-----------IH---Y----------------G-----------------------------RS-NSFNGL  116 (311)
Q Consensus        97 ~l~~~L~~-----------~~---~----------------r-----------------------------r~-~~~~~~  116 (311)
                      .|.++...           ..   .                +                             ++ ...++.
T Consensus       410 ~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~  489 (1528)
T PF05088_consen  410 RLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGR  489 (1528)
T ss_pred             HHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCe
Confidence            44432221           10   0                0                             01 334467


Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc---C--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH---N--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~---~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      +.+.++....+..|+++.-+|..+|+.|.+.+-+..   +  ...+.-|++.. ..+...+..+..+.+++.|.++..+.
T Consensus       490 ~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~~~v~~g~  568 (1528)
T PF05088_consen  490 LRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAFEAVWNGR  568 (1528)
T ss_pred             EEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999999999999999887664   2  24677899987 45554444456677888888776554


Q ss_pred             C
Q 021491          192 N  192 (311)
Q Consensus       192 ~  192 (311)
                      .
T Consensus       569 ~  569 (1528)
T PF05088_consen  569 A  569 (1528)
T ss_pred             C
Confidence            3

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=85.68  E-value=2.6  Score=35.64  Aligned_cols=37  Identities=8%  Similarity=0.191  Sum_probs=33.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-EcC
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDG   72 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~~   72 (311)
                      ..+.+.-.|.||.++++++.|+..|+||.+-.+. |.+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~   42 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTET   42 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCC
Confidence            4678889999999999999999999999998887 543

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=85.62  E-value=9.2  Score=26.12  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             EEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491          117 TALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (311)
Q Consensus       117 t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T  151 (311)
                      ..|.+.+   ++.||+++++.++|++.|+++......+
T Consensus         2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~   39 (66)
T cd04922           2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS   39 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            3567776   4889999999999999999997665433

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PRK08818 prephenate dehydrogenase; Provisional

Probab=85.35  E-value=2.2  Score=40.99  Aligned_cols=49  Identities=12%  Similarity=0.015  Sum_probs=37.2

Q ss_pred             CeEEEEEEeC-CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          115 GLTALELTGT-DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       115 ~~t~i~V~~~-DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      ..+.+.+.-+ |+||-|++++..|+.+|+||.+-++.-.. .....|+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEE
Confidence            3566777776 99999999999999999999998883222 1222288875

>PLN02551 aspartokinase

Probab=84.13  E-value=26  Score=35.33  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=68.3

Q ss_pred             CeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       115 ~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      +.+.|+|.+.   +.+|++++|...|+++|++|..-.  +. + ..-.|.+.. .   .+   ...+.+++.+.+++.. 
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e-~sIs~~v~~-~---~~---~~~~~i~~~l~~l~~e-  432 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-E-VSISLTLDP-S---KL---WSRELIQQELDHLVEE-  432 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-C-CEEEEEEeh-h---Hh---hhhhhHHHHHHHHHHH-
Confidence            4567788655   689999999999999999998762  22 2 223455543 1   11   1112233333222111 


Q ss_pred             CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC--CccchHHHHHHHhh
Q 021491          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK--DRTKLLFDVVCTLT  269 (311)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~--DRpGLL~~I~~~l~  269 (311)
                      ..                 +          +            ..|.+.    .+..+|.|.+.  .+||++.++-++|+
T Consensus       433 l~-----------------~----------~------------~~V~v~----~~vAiISvVG~~~~~~gvaariF~aLa  469 (521)
T PLN02551        433 LE-----------------K----------I------------AVVNLL----QGRSIISLIGNVQRSSLILEKVFRVLR  469 (521)
T ss_pred             hh-----------------c----------C------------CeEEEe----CCEEEEEEEccCCCCccHHHHHHHHHH
Confidence            00                 0          0            112221    23556666654  68999999999999


Q ss_pred             cCCeEEEEEEEEe
Q 021491          270 DMEYVVFHATINT  282 (311)
Q Consensus       270 ~~gi~I~~A~I~T  282 (311)
                      +.||||......+
T Consensus       470 ~~gInV~mIsqga  482 (521)
T PLN02551        470 TNGVNVQMISQGA  482 (521)
T ss_pred             HCCCCeEEEEecC
Confidence            9999998776544

>PRK08526 threonine dehydratase; Provisional

Probab=84.10  E-value=23  Score=34.40  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=55.6

Q ss_pred             CCcHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-----ceEEEEEEEE
Q 021491           89 LTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-----GRIASLIYVK  163 (311)
Q Consensus        89 ~~~~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-----~~~~d~F~V~  163 (311)
                      ++...+.+-+++.|....        ....+.|.-+||||-|.+++..+.+.|.||.+-.-....     +.+.-.+.+.
T Consensus       307 id~~~~~~i~~~~l~~~~--------r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e  378 (403)
T PRK08526        307 IDVQMLNIIIEKGLIKSY--------RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLE  378 (403)
T ss_pred             CCHHHHHHHHHHHHHhcC--------CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEE
Confidence            444445555555554332        467899999999999999999999999999887664431     3333334444


Q ss_pred             ecCCCCCCCChHHHHHHHHHHHH
Q 021491          164 DCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       164 ~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      . .      ++++.++|.+.|.+
T Consensus       379 ~-~------~~~~~~~~~~~l~~  394 (403)
T PRK08526        379 T-K------GKEHQEEIRKILTE  394 (403)
T ss_pred             e-C------CHHHHHHHHHHHHH
Confidence            3 1      35677777777754

>PRK08198 threonine dehydratase; Provisional

Probab=83.55  E-value=10  Score=36.67  Aligned_cols=36  Identities=14%  Similarity=0.181  Sum_probs=32.5

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS   69 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~   69 (311)
                      ....+.|.-+|+||-|++++..++++|.||.+....
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            345789999999999999999999999999988775

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=82.93  E-value=13  Score=25.70  Aligned_cols=29  Identities=10%  Similarity=0.365  Sum_probs=25.3

Q ss_pred             EEEEEEeC---CcccHHHHHHHHHHhCCCeEE
Q 021491          117 TALELTGT---DRVGLLSEVFAVLADLQCSVV  145 (311)
Q Consensus       117 t~i~V~~~---DrpGLL~~I~~~L~~~glnI~  145 (311)
                      ..|.|.+.   +.||+++++..+|.+.|+++.
T Consensus         2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            35777775   789999999999999999996

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=82.56  E-value=3  Score=42.02  Aligned_cols=50  Identities=14%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEE
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVK  163 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~  163 (311)
                      .....+-+.-.|+||.+..++..|.++++||...++...  |+.+.-++.+.
T Consensus       449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D  500 (525)
T TIGR01327       449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD  500 (525)
T ss_pred             cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence            344556667799999999999999999999999998865  56666555443

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=82.14  E-value=12  Score=24.66  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=30.3

Q ss_pred             eCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491          123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (311)
Q Consensus       123 ~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~  164 (311)
                      .+|.||.++++.+.|.++|++|........ ++...-.|.+..
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~   50 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK   50 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence            478999999999999999999977655432 233333455543

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=81.72  E-value=3  Score=35.04  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=27.7

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI   68 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i   68 (311)
                      +-.++.....+.||+++.+++.++++|++|..+-.
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            33444444678899999999999999999997654

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=81.43  E-value=10  Score=36.67  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~  164 (311)
                      .+.+-+..+|+||.|+++.+.|+.+|+|+..-.-.-. ++...=.|||.-
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~  346 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV  346 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence            5556666689999999999999999999987777644 445667888886

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=81.28  E-value=1.5  Score=44.09  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG  284 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g  284 (311)
                      .++|.|.||.|+..+|...|..++||+....|...|
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~   37 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG   37 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence            379999999999999999999999999999998865

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=80.84  E-value=3.1  Score=40.97  Aligned_cols=54  Identities=6%  Similarity=-0.055  Sum_probs=41.9

Q ss_pred             CCCceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEE--EEEEEec
Q 021491          243 ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL--VINCYQF  296 (311)
Q Consensus       243 ~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D--~F~v~~~  296 (311)
                      .+...|.|-+..+|+||-|+++.+.|+++|||+.+..-.-.+..-.+  .|||.-.
T Consensus        27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E   82 (464)
T TIGR01270        27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE   82 (464)
T ss_pred             CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence            34445666677799999999999999999999999888766555444  6767654

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=80.80  E-value=15  Score=35.19  Aligned_cols=47  Identities=15%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-----cCCEEEEEEEEE
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-----DGRFFMDVFHVT   82 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-----~~g~~~d~f~v~   82 (311)
                      ..+.|..+|+||.|++++..+++.|.||.+-....     ..+.+.-.+.+.
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~ve  357 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLE  357 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEE
Confidence            37889999999999999999999999999875542     234554445554

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09181 aspartate kinase; Validated

Probab=80.76  E-value=44  Score=33.33  Aligned_cols=106  Identities=21%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             CeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       115 ~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      +.+.|+|.+.   +.+|++++|...|+++|++|.  .+.+..  ..-.|.+..    .    ...++++.+.|...+   
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~----~----~~~~~~~~~~L~~~~---  392 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWG----S----LKTLKRVIAELEKRY---  392 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcC----C----hHHHHHHHHHHHHhc---
Confidence            4556677543   689999999999999999998  233321  223454543    1    112223322222111   


Q ss_pred             CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCC--ccchHHHHHHHhh
Q 021491          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKD--RTKLLFDVVCTLT  269 (311)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~D--RpGLL~~I~~~l~  269 (311)
                       ..                                        ..|+.     .+..+|.|.|..  +||+..++-++|+
T Consensus       393 -~~----------------------------------------~~i~~-----~~~a~VsvVG~gm~~~gv~ak~f~aL~  426 (475)
T PRK09181        393 -PN----------------------------------------AEVTV-----RKVAIVSAIGSNIAVPGVLAKAVQALA  426 (475)
T ss_pred             -CC----------------------------------------ceEEE-----CCceEEEEeCCCCCcccHHHHHHHHHH
Confidence             10                                        01111     235577777654  8999999999999


Q ss_pred             cCCeEEEEEEEE
Q 021491          270 DMEYVVFHATIN  281 (311)
Q Consensus       270 ~~gi~I~~A~I~  281 (311)
                      +.||||....-.
T Consensus       427 ~~~Ini~~i~qg  438 (475)
T PRK09181        427 EAGINVLALHQS  438 (475)
T ss_pred             HCCCCeEEEEec
Confidence            999999665443

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=80.58  E-value=16  Score=25.05  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=28.4

Q ss_pred             EEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491          117 TALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT  151 (311)
Q Consensus       117 t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T  151 (311)
                      ..|.+.+.   ++||+++++.++|++.|+++......+
T Consensus         2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            35677765   789999999999999999997665544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=80.51  E-value=62  Score=32.01  Aligned_cols=108  Identities=14%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             CCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          114 NGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       114 ~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      .+.+.|+|.+.   ..+|.+++|...|.++|+|+..-.......  .-.|.+..          .........|.+.+..
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~--~i~~~v~~----------~~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEV--SISFTVPE----------SDAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCC--eEEEEEch----------hhHHHHHHHHHHHHhh
Confidence            45667777764   345999999999999999997543332111  14566654          1112333333332211


Q ss_pred             CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEe---CCccchHHHHHHH
Q 021491          191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQC---KDRTKLLFDVVCT  267 (311)
Q Consensus       191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~---~DRpGLL~~I~~~  267 (311)
                      ...                                          .|.++.    ...++.+.+   +..||..+++..+
T Consensus       373 ~~~------------------------------------------~v~~~~----~~a~vsiVG~gm~~~~gvaa~~f~a  406 (447)
T COG0527         373 LLA------------------------------------------EVEVEE----GLALVSIVGAGMRSNPGVAARIFQA  406 (447)
T ss_pred             hcc------------------------------------------eEEeeC----CeeEEEEEccccccCcCHHHHHHHH
Confidence            110                                          111111    233455554   5789999999999


Q ss_pred             hhcCCeEEEEEE
Q 021491          268 LTDMEYVVFHAT  279 (311)
Q Consensus       268 l~~~gi~I~~A~  279 (311)
                      |++.||||....
T Consensus       407 L~~~~ini~~is  418 (447)
T COG0527         407 LAEENINIIMIS  418 (447)
T ss_pred             HHhCCCcEEEEE
Confidence            999999999877

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=80.17  E-value=3.1  Score=29.10  Aligned_cols=28  Identities=14%  Similarity=0.118  Sum_probs=24.4

Q ss_pred             eCCccchHHHHHHHhhcCCeEEEEEEEE
Q 021491          254 CKDRTKLLFDVVCTLTDMEYVVFHATIN  281 (311)
Q Consensus       254 ~~DRpGLL~~I~~~l~~~gi~I~~A~I~  281 (311)
                      .+|+||.++++.++|++.|++|....-.
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~   36 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQN   36 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence            4799999999999999999999866543

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=80.10  E-value=11  Score=27.83  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      .+.+.+.+.++|+.|.++.++....|..+.....++.  +|.+---|.|..   ..+      .+.|...|+++
T Consensus         3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~------~~lL~~QLeKl   67 (86)
T COG3978           3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRS------VDLLTSQLEKL   67 (86)
T ss_pred             eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCC------hHHHHHHHHHH
Confidence            5789999999999999999999999999999998886  566655565653   222      25567776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 6e-08
 Identities = 50/322 (15%), Positives = 97/322 (30%), Gaps = 83/322 (25%)

Query: 11  DEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70
           +  E ++  +      ID          + D +    + + ++Q      LL  K Y + 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTS-----RSDHSSNIKLRIHSIQ-AELRRLLKSKPYENC 246

Query: 71  ----DGRFFMDVFHVTDLN----GNK--LT--DESVISYIEQSLETIHYGRSNSFNGLTA 118
                     +V +    N      K  LT   + V  ++  +  T H    +    LT 
Sbjct: 247 LLVLL-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTP 300

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQID 178
            E+       LL +        Q    E    T N R  S+I          I D   + 
Sbjct: 301 DEV-----KSLLLKYLDC--RPQDLPREVL--TTNPRRLSII-------AESIRD--GLA 342

Query: 179 RIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVT 238
             +   ++V     +       +  ++   E   ++ M     ++R+ V   S   P + 
Sbjct: 343 TWD-NWKHV-----NCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPSAHIPTIL 391

Query: 239 VQN-WAD-------------RSYSVVNVQCKDRTK----LLFDVVCTLTDMEYVVFHATI 280
           +   W D               YS+V  Q K+ T     +  ++   L +   +  H +I
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--HRSI 449

Query: 281 NTAGERAYLVINCYQFDSNYCC 302
                     ++ Y     +  
Sbjct: 450 ----------VDHYNIPKTFDS 461

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 50/326 (15%), Positives = 109/326 (33%), Gaps = 78/326 (23%)

Query: 1   MKDMEWPACLD---------EYEKLVI---RMNTPRVVIDNAVCPTATLVK--VDSARR- 45
           + + +     D         E + +++    ++    +    +     +V+  V+   R 
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 46  -HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLE- 103
            +  L+  ++       ++ + YI    R + D       N   ++       + Q+L  
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALLE 146

Query: 104 -------TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLAD--LQCSVVEAKV-WTHN 153
                   I  G   S  G T +                V     +QC  ++ K+ W   
Sbjct: 147 LRPAKNVLID-GVLGS--GKTWV-------------ALDVCLSYKVQC-KMDFKIFW--- 186

Query: 154 GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLH 213
                 + +K+CNS   + +  Q      +L   +  +   RS   +      H+ +   
Sbjct: 187 ------LNLKNCNSPETVLEMLQ------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 214 QMMFADRDYER-MPVLRHSTDYPVVTVQNWADRSYSVVNVQCK----DRTKLLFDVVCTL 268
           + +   + YE  + VL +        VQN   ++++  N+ CK     R K + D +   
Sbjct: 235 RRLLKSKPYENCLLVLLN--------VQNA--KAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 269 TDMEYVVFHATIN-TAGERAYLVINC 293
           T     + H ++  T  E   L++  
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKY 310

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 9/72 (12%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQ 175
           L  + + G D+ G+ +++  V++    ++    +   +G     + +        ++++ 
Sbjct: 5   LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTD 57

Query: 176 QIDRIEARLRNV 187
           ++  +  +LR V
Sbjct: 58  KLTTLMDKLRKV 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.79
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.75
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.73
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.95
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.86
2f06_A	144	Conserved hypothetical protein; structural genomic	98.76
2f06_A	144	Conserved hypothetical protein; structural genomic	98.41
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.34
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.26
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.03
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.03
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.91
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.7
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.65
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.64
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.6
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.58
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.54
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.54
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.54
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.51
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.5
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.5
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.49
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.47
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.47
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.46
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.33
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.23
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.16
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.14
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	97.08
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.73
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.7
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.67
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.62
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.6
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.55
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.47
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.23
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.05
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.01
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.9
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.83
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.49
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	95.34
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	93.75
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.38
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	93.25
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.7
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.18
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	91.21
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	90.71
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	90.46
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	89.42
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	89.41
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.26
3luy_A	329	Probable chorismate mutase; structural genomics, A	88.53
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	87.57
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.9
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	86.43
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	86.01
3luy_A	329	Probable chorismate mutase; structural genomics, A	84.85
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	84.67
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	82.42
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	82.19
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	80.84

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.79  E-value=3.3e-18  Score=148.28  Aligned_cols=148  Identities=19%  Similarity=0.161  Sum_probs=110.8

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC------
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY------  107 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~------  107 (311)
                      ...+|+|+|+||||||++++++|+.+|+||++|++++..|.+.-.|.|..+. .  ......+.|++.|.....      
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA-K--DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCeE
Confidence            3578999999999999999999999999999999998555444478886542 1  212345667777754321      


Q ss_pred             -CCC---CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHH
Q 021491          108 -GRS---NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIE  181 (311)
Q Consensus       108 -rr~---~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~  181 (311)
                       .++   ......++|+|.|+||||++++|+++|+++|+||.++++.|.+  ++..+.|++.. ..+.+  +... +.|+
T Consensus        81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~-~~~~~--~~~~-~~l~  156 (195)
T 2nyi_A           81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS-RVAFP--FPLY-QEVV  156 (195)
T ss_dssp             CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE-EEEEE--GGGH-HHHH
T ss_pred             EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE-EEEcC--CCcc-HHHH
Confidence             011   2234678999999999999999999999999999999999987  55678888876 33323  2345 7888


Q ss_pred             HHHHHHh
Q 021491          182 ARLRNVL  188 (311)
Q Consensus       182 ~~L~~~L  188 (311)
                      +.|....
T Consensus       157 ~~l~~~a  163 (195)
T 2nyi_A          157 TALSRVE  163 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888643

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=3.8e-18  Score=147.84  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=105.1

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI  194 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (311)
                      ..++|+|+|+|||||+++|+++|+++|+||.++++++..+.+.-.|.|.. . ..  .....++.|++.|..++.+ ..+
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~-~-~~--~~~~~~~~l~~~L~~~~~~-~~~   78 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL-N-AK--DGKLIQSALESALPGFQIS-TRR   78 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-S-SS--SSHHHHHHHHHHSTTCEEE-EEE
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe-c-Cc--cchhHHHHHHHHHHHHHHh-cCC
Confidence            45789999999999999999999999999999999998777766888876 2 21  1223455566555432211 111


Q ss_pred             chhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCeE
Q 021491          195 RSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYV  274 (311)
Q Consensus       195 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~  274 (311)
                      .              .+          +.        . .+    . ..+...++|+|.|+|||||+++|+++|+++|+|
T Consensus        79 ~--------------~~----------~~--------~-~~----~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~n  120 (195)
T 2nyi_A           79 A--------------SS----------VA--------E-RH----V-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGAN  120 (195)
T ss_dssp             C--------------CC----------C-----------------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCE
T ss_pred             e--------------EE----------EE--------e-CC----c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCC
Confidence            0              00          10        0 01    1 344567899999999999999999999999999


Q ss_pred             EEEEEEEecC--CeEEEEEEEEec
Q 021491          275 VFHATINTAG--ERAYLVINCYQF  296 (311)
Q Consensus       275 I~~A~I~T~g--~~a~D~F~v~~~  296 (311)
                      |..++..|.+  +++.|.||++..
T Consensus       121 I~~~~~~t~~~~~~~~~~F~m~~~  144 (195)
T 2nyi_A          121 IVELETETLPAPFAGFTLFRMGSR  144 (195)
T ss_dssp             EEEEEEEEEECSSTTCEEEEEEEE
T ss_pred             EEEceeeecccccCCCCeEEEEEE
Confidence            9999999999  889999999865

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.75  E-value=2.6e-17  Score=142.00  Aligned_cols=138  Identities=14%  Similarity=0.182  Sum_probs=106.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI  194 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (311)
                      ..++|+|.|+||||++++|+++|+++|+||.++++++.++.+...|.|.. +       ....+.|++.|.++. ++.++
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~~~-~~~~~   75 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S-------PSNITRVETTLPLLG-QQHDL   75 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C-------HHHHHHHHHHHHHHH-HHHTC
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec-C-------CCCHHHHHHHHHHHH-HhcCC
Confidence            45789999999999999999999999999999999998887777888876 2       245678888888754 22222


Q ss_pred             chhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCeE
Q 021491          195 RSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYV  274 (311)
Q Consensus       195 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~  274 (311)
                      .     +         +.+.       ..         .++     +..+...++|.|.++||||++++|+.+|+++|+|
T Consensus        76 ~-----~---------~~~~-------~~---------~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~n  120 (192)
T 1u8s_A           76 I-----T---------MMKR-------TS---------PHD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIG  120 (192)
T ss_dssp             E-----E---------EEEE-------EC---------CCC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCC
T ss_pred             E-----E---------EEEe-------CC---------CCC-----CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCc
Confidence            1     0         1110       10         011     2444567899999999999999999999999999


Q ss_pred             EEEEEEEecCC----eEEEEEEEEec
Q 021491          275 VFHATINTAGE----RAYLVINCYQF  296 (311)
Q Consensus       275 I~~A~I~T~g~----~a~D~F~v~~~  296 (311)
                      |..++..|.++    +..|.||++..
T Consensus       121 I~~~~~~t~~~~~~~~~~~~F~~~~~  146 (192)
T 1u8s_A          121 MASLSAQTISKDKLHSEQNQFHIAIS  146 (192)
T ss_dssp             EEEEEEEEEC--------CEEEEEEE
T ss_pred             HHHhhhhcccCCccCCCCCEEEEEEE
Confidence            99999999985    78999999875

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.73  E-value=1.1e-16  Score=138.01  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=107.1

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhcc-C------
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH-Y------  107 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~-~------  107 (311)
                      ..+|+|+|+||||++++++++|+.+|+||+++++++..|.+.-.+.|..+. .  ..+.+.+.|...+.... .      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-~--~~~~l~~~L~~~~~~~~~~~~~~~~   82 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-S--NITRVETTLPLLGQQHDLITMMKRT   82 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-H--HHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-C--CHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            478999999999999999999999999999999998767666688886432 1  11344555554432211 0      


Q ss_pred             -CC-CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc----eEEEEEEEEecCCCCCCCChHHHHHHH
Q 021491          108 -GR-SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG----RIASLIYVKDCNSGSPIEDSQQIDRIE  181 (311)
Q Consensus       108 -rr-~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~----~~~d~F~V~~~~~g~~~~~~~~~~~l~  181 (311)
                       +. +......++|+|.++||||++++|+++|+++|+||.+++..|.+.    +..+.|+++. ..+.+  ++...+.|+
T Consensus        83 ~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~-~~~~~--~~~~~~~l~  159 (192)
T 1u8s_A           83 SPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI-SARVD--SGCNLMQLQ  159 (192)
T ss_dssp             CCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE-EEEEC--TTSCHHHHH
T ss_pred             CCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE-EEeCC--CCCCHHHHH
Confidence             01 133446789999999999999999999999999999999999873    5678888876 33322  123457788


Q ss_pred             HHHHHHh
Q 021491          182 ARLRNVL  188 (311)
Q Consensus       182 ~~L~~~L  188 (311)
                      +.|.+..
T Consensus       160 ~~l~~~~  166 (192)
T 1u8s_A          160 EEFDALC  166 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888643

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.95  E-value=3.6e-08  Score=94.07  Aligned_cols=129  Identities=10%  Similarity=-0.039  Sum_probs=92.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC------
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY------  107 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~------  107 (311)
                      ....|+|.|+||||+.+.++++|+++|+||++.+.+..+|.+.-...+.-+... .+.+.+.+.++. +.....      
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~~~~l~~~l~~-~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-ADGPALRHDVEA-AIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HTSHHHHHHHHH-HHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CCHHHHHHHHHH-HHHHcCeEEEEE
Confidence            356899999999999999999999999999999999888877655555432211 111345555553 222211      


Q ss_pred             ---CC-CCCCCCeEEEEEEeCC-cccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          108 ---GR-SNSFNGLTALELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       108 ---rr-~~~~~~~t~i~V~~~D-rpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                         .+ ......+..+++.+.| ++|++.+|+.+++++|+||...+..+....+.--|++..
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence               01 1234467889999999 999999999999999999998887774333333366654

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.86  E-value=5.1e-08  Score=93.01  Aligned_cols=140  Identities=11%  Similarity=0.068  Sum_probs=97.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI  194 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  194 (311)
                      ..++|+|.|+||||+++.|++.|+++|+||.+++.++.+|.+.-...+.. +..     ....+.|++.|.. +.++..+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~-~~~-----~~~~~~l~~~l~~-~~~~~~~   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCC-PAD-----VADGPALRHDVEA-AIRKVGL   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEE-CHH-----HHTSHHHHHHHHH-HHHHTTC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEe-cCC-----cCCHHHHHHHHHH-HHHHcCe
Confidence            46789999999999999999999999999999999998888776666654 111     0123678888775 3333333


Q ss_pred             chhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCC-ccchHHHHHHHhhcCCe
Q 021491          195 RSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKD-RTKLLFDVVCTLTDMEY  273 (311)
Q Consensus       195 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~D-RpGLL~~I~~~l~~~gi  273 (311)
                      .     +         +...       ..         .+++     .....+.++++.++| +||++.+|+.+++++|+
T Consensus        84 ~-----~---------~~~~-------~~---------~~~~-----~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~  128 (415)
T 3p96_A           84 D-----V---------SIER-------SD---------DVPI-----IREPSTHTIFVLGRPITAAAFGAVAREVAALGV  128 (415)
T ss_dssp             E-----E---------EEEE-------CS---------SSCS-----SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred             E-----E---------EEEE-------CC---------cccc-----cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCC
Confidence            2     1         1100       00         0000     022346689999999 99999999999999999


Q ss_pred             EEEEEEEEecCCeEEEEEEEEec
Q 021491          274 VVFHATINTAGERAYLVINCYQF  296 (311)
Q Consensus       274 ~I~~A~I~T~g~~a~D~F~v~~~  296 (311)
                      ||...+.-+......=.|++.-.
T Consensus       129 Ni~~l~~~~~~~~~~~~~~v~~~  151 (415)
T 3p96_A          129 NIDLIRGVSDYPVIGLELRVSVP  151 (415)
T ss_dssp             EEEEEEEEESSSSEEEEEEEECC
T ss_pred             CccceeeccCCCceEEEEEeeCC
Confidence            99998887743333333666443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.76  E-value=5.8e-07  Score=73.20  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=74.7

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCCCC
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNG  115 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~~~  115 (311)
                      .+++|..+|+||.++++++.|++.|+||..-.+....+..+-.|.+.       +.+...+.|+    ....    ....
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~-------d~~~a~~~L~----~~G~----~v~~   71 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS-------DPDKAYKALK----DNHF----AVNI   71 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES-------CHHHHHHHHH----HTTC----CEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC-------CHHHHHHHHH----HcCC----eEee
Confidence            57889999999999999999999999999887764222122224432       1133444333    2211    0112


Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEE
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLI  160 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F  160 (311)
                      ..++.+..+|+||.+++++++|++.|+||.....+..+++..-+|
T Consensus        72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence            346777889999999999999999999998776653344444344

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.41  E-value=1.2e-05  Score=65.27  Aligned_cols=111  Identities=19%  Similarity=0.116  Sum_probs=73.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcc
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIR  195 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  195 (311)
                      ...++|..+|+||.++++++.|++.|+||..-.+....+...-.|.+.         ++   +..++.|.+.  +   ..
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~---------d~---~~a~~~L~~~--G---~~   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS---------DP---DKAYKALKDN--H---FA   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES---------CH---HHHHHHHHHT--T---CC
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC---------CH---HHHHHHHHHc--C---Ce
Confidence            357889999999999999999999999999877753322111123221         22   2233333321  1   00


Q ss_pred             hhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCeEE
Q 021491          196 SAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVV  275 (311)
Q Consensus       196 ~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I  275 (311)
                                               ..                       .+.++-+..+|+||.+++++++|++.|+||
T Consensus        69 -------------------------v~-----------------------~~svv~v~~~d~pGvla~i~~~L~~~~InI  100 (144)
T 2f06_A           69 -------------------------VN-----------------------ITDVVGISCPNVPGALAKVLGFLSAEGVFI  100 (144)
T ss_dssp             -------------------------EE-----------------------EEEEEEEEEESSTTHHHHHHHHHHHTTCCE
T ss_pred             -------------------------Ee-----------------------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCE
Confidence                                     00                       023677788999999999999999999999


Q ss_pred             EEEEEEecCCeEEEEE
Q 021491          276 FHATINTAGERAYLVI  291 (311)
Q Consensus       276 ~~A~I~T~g~~a~D~F  291 (311)
                      .+......+.++.=+|
T Consensus       101 ~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A          101 EYMYSFANNNVANVVI  116 (144)
T ss_dssp             EEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCcEEEEE
Confidence            8766552344444444

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.34  E-value=3.2e-06  Score=63.05  Aligned_cols=66  Identities=12%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ..+.|+|.++||||+|++|+++|+++|+||.+....+.++.+.-.+.+.. + + .    ..++.|.+.|.+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~-~-~----~~l~~l~~~L~~~   69 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-D-E-K----QDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-S-S-C----CCHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-C-C-C----CCHHHHHHHHHHH
Confidence            45789999999999999999999999999999999987777777777755 2 1 1    2356777777753

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.26  E-value=8.9e-06  Score=60.55  Aligned_cols=64  Identities=14%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ...|+|.++||||++++++++|+++|+||.+....+.+|.+.-.+.+.-++..  .-+.+.+.|++
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~--~l~~l~~~L~~   68 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ--DFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC--CHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCC--CHHHHHHHHHH
Confidence            46799999999999999999999999999999999877877767777543312  22456666654

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.03  E-value=1.7e-05  Score=58.35  Aligned_cols=50  Identities=4%  Similarity=0.060  Sum_probs=43.2

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEec
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQF  296 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~  296 (311)
                      .+.+.|.+.||||+|++|+.+|++.|+||.++.+.+.++.+...|.+.-.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~   54 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK   54 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence            45789999999999999999999999999999999877777777665543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.03  E-value=2.7e-05  Score=57.28  Aligned_cols=50  Identities=12%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      -.+.|.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+..
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~   53 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV   53 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence            35678999999999999999999999999999999887665566666654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.91  E-value=0.00015  Score=60.42  Aligned_cols=109  Identities=12%  Similarity=0.160  Sum_probs=75.5

Q ss_pred             CCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEE-EcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491           33 PTATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (311)
Q Consensus        33 ~~~t~V~V~-~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~  110 (311)
                      .+...|+|. .+|+||.++++..+|+++|+||..-... +.+|...-.|+|...+     .++..+.|++ +........
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~-----~~~a~~~l~~-~~~~l~~~~   96 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGD-----YKQTLEILSE-RQDSIGAAS   96 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGG-----HHHHHHHHHH-SSTTTTCSE
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechH-----HHHHHHHHHH-HHHHcCCce
Confidence            367889998 5999999999999999999999876654 2346555567775311     1233343443 211111100


Q ss_pred             -CCCCCeEEEEEEeCC---cccHHHHHHHHHHhCCCeEEEE
Q 021491          111 -NSFNGLTALELTGTD---RVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       111 -~~~~~~t~i~V~~~D---rpGLL~~I~~~L~~~glnI~~A  147 (311)
                       ....+...+.|.+.+   +||+++++..+|++.|+||..-
T Consensus        97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence             123467889999977   9999999999999999999883

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.70  E-value=0.0017  Score=58.80  Aligned_cols=115  Identities=9%  Similarity=0.009  Sum_probs=71.6

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC--CC
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--RS  110 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r--r~  110 (311)
                      ...+++.|+||||+.+++++.|+++|+||.+.+.++  ..|.+.-...+.-+.+ ..+.+.+.+.++. +.....-  +-
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~~L~~~f~~-la~~~~m~~~l   83 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLASLRTGFGV-IAAKFTMGWHM   83 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHHHHHHHHHH-HHHHTTCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHHHHHHHHHH-HHHHcCCEEEe
Confidence            468999999999999999999999999999999985  4577765555543332 2333456665553 3332210  00


Q ss_pred             CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491          111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (311)
Q Consensus       111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T  151 (311)
                      ........|-|...-+-.-|.+|......-.++..=+-+.+
T Consensus        84 ~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           84 RDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             EETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             eccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            01112334555544444567788777777666554333333

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.65  E-value=0.00026  Score=64.65  Aligned_cols=66  Identities=15%  Similarity=0.127  Sum_probs=48.8

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ....++|.|+||||+.+++++.|+++|+||.+++.++.  .|++.-...+..+.+ ..+.+.+++.++.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PFDLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SSCHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CCCHHHHHHHHHH
Confidence            34689999999999999999999999999999999974  677765555543222 2333455555543

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.64  E-value=0.0012  Score=54.85  Aligned_cols=110  Identities=11%  Similarity=0.079  Sum_probs=73.9

Q ss_pred             CCeEEEEEEe-CCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491          114 NGLTALELTG-TDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD  191 (311)
Q Consensus       114 ~~~t~i~V~~-~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  191 (311)
                      .+...|+|.+ +|+||.+++|.+.|+++|+||..-..... +|...-.|.|..          ...++..+.|.+ +..+
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~----------~~~~~a~~~l~~-~~~~   91 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR----------GDYKQTLEILSE-RQDS   91 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG----------GGHHHHHHHHHH-SSTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec----------hHHHHHHHHHHH-HHHH
Confidence            3667888884 99999999999999999999987655432 344444566653          111333344443 2221


Q ss_pred             CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCC---ccchHHHHHHHh
Q 021491          192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKD---RTKLLFDVVCTL  268 (311)
Q Consensus       192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~D---RpGLL~~I~~~l  268 (311)
                      ...                                        ..|.++    .+.+.+.|.+.+   +||+++++.++|
T Consensus        92 l~~----------------------------------------~~i~~~----~~~a~vsvvG~~m~~~~Gv~a~i~~aL  127 (167)
T 2re1_A           92 IGA----------------------------------------ASIDGD----DTVCKVSAVGLGMRSHVGVAAKIFRTL  127 (167)
T ss_dssp             TTC----------------------------------------SEEEEE----SSEEEEEEECSSCTTCCCHHHHHHHHH
T ss_pred             cCC----------------------------------------ceEEec----CCEEEEEEECCCcCCCcCHHHHHHHHH
Confidence            110                                        112221    246789998887   999999999999


Q ss_pred             hcCCeEEEEE
Q 021491          269 TDMEYVVFHA  278 (311)
Q Consensus       269 ~~~gi~I~~A  278 (311)
                      ++.||||...
T Consensus       128 ~~~~InI~~i  137 (167)
T 2re1_A          128 AEEGINIQMI  137 (167)
T ss_dssp             HHTTCCCCEE
T ss_pred             HHCCCcEEEE
Confidence            9999999994

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.60  E-value=0.0024  Score=57.83  Aligned_cols=64  Identities=6%  Similarity=0.058  Sum_probs=48.1

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ...++|.|+||||+.+++++.|+++|+||.+.+.++  ..|++.-...+..+.  ..+.+.+++.+..
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~   73 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAE   73 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHH
Confidence            468999999999999999999999999999999996  457766555554322  2333456665553

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.58  E-value=0.0005  Score=57.84  Aligned_cols=110  Identities=14%  Similarity=0.162  Sum_probs=73.7

Q ss_pred             CCCeEEEEE-EecCCCcHHHHHHHHHHhCCceEEEEEEEEc---CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC
Q 021491           32 CPTATLVKV-DSARRHGILLEAVQVLTDLNLLIKKAYISSD---GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY  107 (311)
Q Consensus        32 ~~~~t~V~V-~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~  107 (311)
                      ..+.+.|+| ..+|+||.++++...|++.|+||..-...+.   +|..--.|.+...+.     ++..+.|++ +.....
T Consensus        12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~-----~~a~~~l~~-~~~~~~   85 (178)
T 2dtj_A           12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGN   85 (178)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHH-----HHHHHHHHT-TTTTTT
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccH-----HHHHHHHHH-HHHhcC
Confidence            346788888 4799999999999999999999986655432   333333477753110     223333332 211111


Q ss_pred             CCC-CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEE
Q 021491          108 GRS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       108 rr~-~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                      .+. ....+...|.|.+.   ++||.++++.++|++.|+||..-
T Consensus        86 ~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           86 WTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             CSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             CCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            110 12346778899886   89999999999999999999884

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.54  E-value=0.0017  Score=54.61  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=73.4

Q ss_pred             CCeEEEEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEEcc---CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          114 NGLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWTH---NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       114 ~~~t~i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~T~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      .+.+.|+|. .+|+||.+++|.+.|++.|+||..-...+.   ++...-.|.+..          ...++..+.|.+ +.
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~~   81 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-LQ   81 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-TT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-HH
Confidence            356778884 699999999999999999999987766554   222323366553          222333333332 11


Q ss_pred             CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHH
Q 021491          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVC  266 (311)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~  266 (311)
                      .+..                            +            ..+.++    .+.+.+.|.|.   ++||+++++.+
T Consensus        82 ~~~~----------------------------~------------~~v~~~----~~~a~VsvVG~gm~~~~Gv~arif~  117 (178)
T 2dtj_A           82 VQGN----------------------------W------------TNVLYD----DQVGKVSLVGAGMKSHPGVTAEFME  117 (178)
T ss_dssp             TTTT----------------------------C------------SEEEEE----SCEEEEEEEEECCTTCHHHHHHHHH
T ss_pred             HhcC----------------------------C------------CeEEEe----CCeEEEEEEcCCcccCccHHHHHHH
Confidence            1110                            0            122222    24667888776   89999999999


Q ss_pred             HhhcCCeEEEEEE
Q 021491          267 TLTDMEYVVFHAT  279 (311)
Q Consensus       267 ~l~~~gi~I~~A~  279 (311)
                      +|++.||||....
T Consensus       118 aLa~~~InI~~is  130 (178)
T 2dtj_A          118 ALRDVNVNIELIS  130 (178)
T ss_dssp             HHHHTTCCCCEEE
T ss_pred             HHHHCCCCEEEEE
Confidence            9999999999853

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.54  E-value=0.00038  Score=63.13  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=49.6

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc--cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT--HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..++|+|.|+||||++++|++.|+++|+||.+++.++  ..|++.-...+.. + . .    ...+.|++.|.+
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~-~-~----~~~~~L~~~f~~   73 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ-P-D-D----FDEAGFRAGLAE   73 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-C-S-S----CCHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec-C-C-C----CCHHHHHHHHHH
Confidence            4578999999999999999999999999999999985  4566554444443 1 1 1    124778888875

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.54  E-value=0.00073  Score=56.13  Aligned_cols=110  Identities=12%  Similarity=0.126  Sum_probs=74.4

Q ss_pred             CCCeEEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEEc---CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC
Q 021491           32 CPTATLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISSD---GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY  107 (311)
Q Consensus        32 ~~~~t~V~V~~-~DrpGL~~~i~~~L~~~glnI~~A~i~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~  107 (311)
                      ..+...|+|.+ +|+||.++++..+|++.|+||..-.....   .|..--.|.|...+.     ++..+.|++...... 
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~~~~~~~-   86 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEPVLAEIG-   86 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHHHHHHHC-
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHHHHHHhC-
Confidence            34677888875 89999999999999999999986544322   345555688864211     223333433211111 


Q ss_pred             CCCCCCCCeEEEEEEeCC---cccHHHHHHHHHHhCCCeEEEE
Q 021491          108 GRSNSFNGLTALELTGTD---RVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       108 rr~~~~~~~t~i~V~~~D---rpGLL~~I~~~L~~~glnI~~A  147 (311)
                      ..-....+...+.|++.+   +||.++++.++|++.|+||..-
T Consensus        87 ~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           87 GEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             CEEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             CcEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence            000123466779999976   9999999999999999999543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.51  E-value=0.0003  Score=64.21  Aligned_cols=67  Identities=19%  Similarity=0.251  Sum_probs=49.9

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ...++|+|.|+||||+++.|++.|+++|+||.+++.++.  .|++.-...+.. + +...    ..+.|++.|..
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~-~-~~~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA-D-TLPF----DLDGFREAFTP   88 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG-G-GSSS----CHHHHHHHHHH
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec-C-CCCC----CHHHHHHHHHH
Confidence            356789999999999999999999999999999999864  566655444443 1 1111    24667777764

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.50  E-value=0.00049  Score=62.47  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc--cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT--HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..++|+|.|+||||++++|++.|+++|+||.+++.++  ..|.+.-...+.. +.. ..    ..+.|++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~-~~----~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA-AAK-VI----PLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE-SSC-CC----CHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc-CCC-CC----CHHHHHHHHHH
Confidence            4578999999999999999999999999999999974  3566655555554 211 12    23667777765

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.50  E-value=0.0032  Score=57.11  Aligned_cols=108  Identities=6%  Similarity=0.009  Sum_probs=63.8

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCC-CCCCCcHHHHHHHHHHhhhccCC--
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLN-GNKLTDESVISYIEQSLETIHYG--  108 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~-g~~~~~~~~~~~l~~~L~~~~~r--  108 (311)
                      ....+++.|+||||+.+++++.|+++|+||.+.+.++  ..|.+.-...+..+. +...+.+.+++.++. +.....-  
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~-la~~~~m~~   87 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP-IAERFRMQW   87 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH-HHHHHTCEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH-HHHhcCcEE
Confidence            3468999999999999999999999999999999996  457766444443220 112233455555543 2222110  


Q ss_pred             --CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeE
Q 021491          109 --RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSV  144 (311)
Q Consensus       109 --r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI  144 (311)
                        +.........|.+.+.  ---|.+|......-.+++
T Consensus        88 ~l~~~~~~~ri~vl~Sg~--g~~l~~ll~~~~~g~l~~  123 (292)
T 3lou_A           88 AIHDVAARPKVLIMVSKL--EHCLADLLFRWKMGELKM  123 (292)
T ss_dssp             EEEETTSCCEEEEEECSC--CHHHHHHHHHHHHTSSCC
T ss_pred             EeeccCCCCEEEEEEcCC--CcCHHHHHHHHHcCCCCc
Confidence              1111122333333333  335677776666655543

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.49  E-value=0.00038  Score=63.17  Aligned_cols=64  Identities=19%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc--cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT--HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..++|+|.|+||||++++|++.|+++|+||.+++.++  ..|++.-...+.. + +      ...+.|++.|..
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~-~------~~~~~L~~~f~~   71 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-P-V------AGVNDFNSAFGK   71 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-C-C---------CHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-C-C------CCHHHHHHHHHH
Confidence            4678999999999999999999999999999999974  3566554444432 1 1      123467777765

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.47  E-value=0.0004  Score=63.17  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=48.4

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc--cCceEEEEEEEEecCC-CCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT--HNGRIASLIYVKDCNS-GSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T--~~~~~~d~F~V~~~~~-g~~~~~~~~~~~l~~~L~~  186 (311)
                      ..++++|.|+||||++++|++.|+++|+||.+++.++  ..|++.-...+.. .. ...    ...+.|++.|..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~~~~----~~~~~L~~~f~~   78 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHA-TDDADA----LRVDALRREFEP   78 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE-CC--------CCHHHHHHHHHH
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEc-cCcccC----CCHHHHHHHHHH
Confidence            4578999999999999999999999999999999985  4566554444433 10 101    124667777765

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.47  E-value=0.0035  Score=56.77  Aligned_cols=112  Identities=11%  Similarity=-0.027  Sum_probs=67.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC---
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG---  108 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r---  108 (311)
                      ....+++.|+||||+.+++++.|+++|+||.+.+.++  ..|++.-...+.. .+.  ..+.+.+.++. +.....-   
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~--~~~~L~~~f~~-la~~~~m~~~   81 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PVA--GVNDFNSAFGK-VVEKYNAEWW   81 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC-----CHHHHHHHH-HHGGGTCEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CCC--CHHHHHHHHHH-HHHHcCCeeE
Confidence            4578999999999999999999999999999999985  4577664444432 221  11245555553 3332210   


Q ss_pred             -CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491          109 -RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT  151 (311)
Q Consensus       109 -r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T  151 (311)
                       +....  ...|-|.+.-+-.-|.+|......-.++..=+-+.+
T Consensus        82 l~~~~~--~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           82 FRPRTD--RKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             EEETTC--CCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             eeccCC--CcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence             11111  223444443333457777777776655543333333

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.46  E-value=0.02  Score=56.99  Aligned_cols=183  Identities=14%  Similarity=0.147  Sum_probs=119.0

Q ss_pred             CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC--
Q 021491           33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY--  107 (311)
Q Consensus        33 ~~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~--  107 (311)
                      .+...|.|.+.   .+||+.+++..+|++.|+||....  +. ..-+ .|.|...+     .+...+.|.+.+.....  
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~I-s~vI~~~d-----~~~Av~aLh~~f~~~~t~~  423 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVKV-SCVIDQRD-----ADRAIAALSNAFGVTLSPP  423 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSEE-EEEEEGGG-----HHHHHHHHHHHTTCCBCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCEE-EEEEcHHH-----HHHHHHHHHHhhcccCCCc
Confidence            46778898875   799999999999999999997654  32 3222 35565321     13466667776644211  


Q ss_pred             --C------C--C--CCCCCeEEEEEEe-CCcccHHHHHHHHHHhCCCeEEEEEEEcc----Cc--eEEEEEEEEecCCC
Q 021491          108 --G------R--S--NSFNGLTALELTG-TDRVGLLSEVFAVLADLQCSVVEAKVWTH----NG--RIASLIYVKDCNSG  168 (311)
Q Consensus       108 --r------r--~--~~~~~~t~i~V~~-~DrpGLL~~I~~~L~~~glnI~~A~i~T~----~~--~~~d~F~V~~~~~g  168 (311)
                        .      +  +  ....+...|+|.. +|+||+.++|.+.|++.|+||..-.....    .|  ...-.|.+..    
T Consensus       424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----  499 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----  499 (600)
T ss_dssp             CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred             cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence              0      0  0  1234667777764 89999999999999999999954433322    23  2334565553    


Q ss_pred             CCCCChHHHHHHHHHHHHHhcCCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCcee
Q 021491          169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYS  248 (311)
Q Consensus       169 ~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~t  248 (311)
                            +.+++..+.|.+ +..+..                                        +.+|.++    .+..
T Consensus       500 ------~d~~~a~~~l~~-~~~~~~----------------------------------------~~~v~~~----~~~a  528 (600)
T 3l76_A          500 ------GDSSQAEAILQP-LIKDWL----------------------------------------DAAIVVN----KAIA  528 (600)
T ss_dssp             ------HHHHHHHHHHHH-HTTTST----------------------------------------TCEEEEE----CCEE
T ss_pred             ------HHHHHHHHHHHH-HHHhcC----------------------------------------CceEEEe----CCeE
Confidence                  333444444443 222111                                        1223333    2467


Q ss_pred             EEEEEe---CCccchHHHHHHHhhcCCeEEEEEE
Q 021491          249 VVNVQC---KDRTKLLFDVVCTLTDMEYVVFHAT  279 (311)
Q Consensus       249 vl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~  279 (311)
                      .+.|.+   +.+||+.+++-++|++.||||....
T Consensus       529 kVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          529 KVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             EEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             EEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            888876   5999999999999999999998766

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.33  E-value=0.00086  Score=55.75  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=51.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ...|+|.+.|+||+|++|+++|++.|+||.+..+.+..  +...-+|.+..        +...+++|.+.|.+.
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCC
Confidence            35789999999999999999999999999999997543  55666666653        246778888888863

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.23  E-value=0.0028  Score=52.54  Aligned_cols=124  Identities=15%  Similarity=0.086  Sum_probs=78.2

Q ss_pred             CCeEEEEEEe-CCcccHHHHHHHHHHhCCCeEEEEEEEcc---CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491          114 NGLTALELTG-TDRVGLLSEVFAVLADLQCSVVEAKVWTH---NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK  189 (311)
Q Consensus       114 ~~~t~i~V~~-~DrpGLL~~I~~~L~~~glnI~~A~i~T~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  189 (311)
                      .+.+.|+|.+ +|+||.++++.++|++.|+||..-.....   .|...-.|.|.. .      +.   ++..+.|.+.. 
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~-~------d~---~~a~~~L~~~~-   82 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK-D------FA---QEALEALEPVL-   82 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG-G------GH---HHHHHHHHHHH-
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh-H------HH---HHHHHHHHHHH-
Confidence            4567788876 89999999999999999999987544322   234445677754 1      11   22223333211 


Q ss_pred             CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCC---ccchHHHHHH
Q 021491          190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKD---RTKLLFDVVC  266 (311)
Q Consensus       190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~D---RpGLL~~I~~  266 (311)
                      .+                              +         ..  .+.++    .+.+.+.|.|.+   +||+++++.+
T Consensus        83 ~~------------------------------~---------~~--~v~~~----~~~a~vsvVG~gm~~~~Gv~a~~f~  117 (167)
T 2dt9_A           83 AE------------------------------I---------GG--EAILR----PDIAKVSIVGVGLASTPEVPAKMFQ  117 (167)
T ss_dssp             HH------------------------------H---------CC--EEEEE----CSEEEEEEEESSGGGSTHHHHHHHH
T ss_pred             HH------------------------------h---------CC--cEEEe----CCEEEEEEECCCcccCcCHHHHHHH
Confidence            00                              0         01  22222    246688888876   9999999999


Q ss_pred             HhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491          267 TLTDMEYVVFHATINTAGERAYLVINCYQFD  297 (311)
Q Consensus       267 ~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~  297 (311)
                      +|++.||||....  |- +. .=.|.|...+
T Consensus       118 aL~~~~InI~~is--~S-e~-~is~vv~~~d  144 (167)
T 2dt9_A          118 AVASTGANIEMIA--TS-EV-RISVIIPAEY  144 (167)
T ss_dssp             HHHHTTCCCCEEE--EC-SS-EEEEEEEGGG
T ss_pred             HHHHCCCCEEEEE--cc-CC-EEEEEEeHHH
Confidence            9999999996553  33 22 3345455443

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.16  E-value=0.0016  Score=54.20  Aligned_cols=64  Identities=13%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ...++|...|+||+|++|+++|++.|+||.+..+...  .+...-+|.+..        ++..+++|.+.|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCC
Confidence            3678999999999999999999999999999998754  356666677764        146778888888864

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.14  E-value=0.012  Score=58.65  Aligned_cols=195  Identities=14%  Similarity=0.138  Sum_probs=116.9

Q ss_pred             EEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-----C
Q 021491           37 LVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-----R  109 (311)
Q Consensus        37 ~V~V~-~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-----r  109 (311)
                      .|++. .++.||..+++...|+.+|++|.--..+. .+|..--.|+|...+-     +...+.+++ +....+.     .
T Consensus       272 ~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~~~~  345 (600)
T 3l76_A          272 KVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPEADQ  345 (600)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTTCSS
T ss_pred             EEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhccccccC
Confidence            34443 47899999999999999999996443332 4565555687753211     222233332 2222100     0


Q ss_pred             --C-CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHH
Q 021491          110 --S-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR  183 (311)
Q Consensus       110 --~-~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~  183 (311)
                        . ....+...|.|++.   .+||+.+++..+|++.|+||..-.  |. + .--.|.|..          +..++.-+.
T Consensus       346 ~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e-~~Is~vI~~----------~d~~~Av~a  411 (600)
T 3l76_A          346 EAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-E-VKVSCVIDQ----------RDADRAIAA  411 (600)
T ss_dssp             SSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-S-SEEEEEEEG----------GGHHHHHHH
T ss_pred             cceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-C-CEEEEEEcH----------HHHHHHHHH
Confidence              0 12356788999985   799999999999999999997665  22 2 233465654          223444455


Q ss_pred             HHHHhcCCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEE-EeCCccchHH
Q 021491          184 LRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNV-QCKDRTKLLF  262 (311)
Q Consensus       184 L~~~L~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v-~~~DRpGLL~  262 (311)
                      |++.+..+....   .          .+.       ...+       ...-+-|..+.    +.+.|.| ..+|+||+.+
T Consensus       412 Lh~~f~~~~t~~---~----------~~~-------~~~~-------~~~v~Gia~~~----~~a~i~i~~~~~~~g~~~  460 (600)
T 3l76_A          412 LSNAFGVTLSPP---K----------NQT-------DTSH-------LPAVRGVALDQ----DQAQIAIRHVPDRPGMAA  460 (600)
T ss_dssp             HHHHTTCCBCCC---C----------CCC-------C----------CCSCCEEEEEC----SEEEEEEEEEESSTTHHH
T ss_pred             HHHhhcccCCCc---c----------ccc-------cccc-------cCceEEEEeeC----CEEEEEEecCCCCccHHH
Confidence            666553321100   0          000       0001       01224455443    3445655 4589999999


Q ss_pred             HHHHHhhcCCeEEEEEEEEe
Q 021491          263 DVVCTLTDMEYVVFHATINT  282 (311)
Q Consensus       263 ~I~~~l~~~gi~I~~A~I~T  282 (311)
                      +|-..|++.||+|....-+.
T Consensus       461 ~if~~La~~~I~vDmI~q~~  480 (600)
T 3l76_A          461 QLFTALAEANISVDMIIQSQ  480 (600)
T ss_dssp             HHHHHHHHTTCCCCEEEEEE
T ss_pred             HHHHHHHHcCCcEEEEEecc
Confidence            99999999999997665553

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=97.08  E-value=0.0035  Score=52.83  Aligned_cols=110  Identities=11%  Similarity=0.073  Sum_probs=74.5

Q ss_pred             CCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEE-c--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC
Q 021491           33 PTATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISS-D--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG  108 (311)
Q Consensus        33 ~~~t~V~V~-~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r  108 (311)
                      .+...|+|. .+|+||.++++..+|++.|+||.--.... .  +|..--.|+|...+.     +...+.|++ +......
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~-----~~a~~~L~~-~~~el~~   87 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLDS-LRNEIGF   87 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH-----HHHHHHHHH-THHHHCC
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH-----HHHHHHHHH-HHHhcCc
Confidence            355666664 78999999999999999999997554432 2  566566788864221     223333333 2111100


Q ss_pred             CC-CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEE
Q 021491          109 RS-NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK  148 (311)
Q Consensus       109 r~-~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~  148 (311)
                      .. ....+...|.|++.   ++||+.+++.++|++.|+||....
T Consensus        88 ~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            00 12346788998875   899999999999999999998766

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.73  E-value=0.0067  Score=50.31  Aligned_cols=103  Identities=13%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-c-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC----C
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-D-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----R  109 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----r  109 (311)
                      ..+.|.+.|+||+|++++++|+..|+||.+..+.. . .|...-+|.+.   +.    +...+.|.+.|..-...    |
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d----~~~leqI~kqL~Kl~dV~~V~r   76 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD----EKVLEQIEKQLHKLVDVLRVSE   76 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC----HHHHHHHHHHHHHSTTEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc----HHHHHHHHHHHcCCCCEEEEEE
Confidence            57899999999999999999999999999999974 4 37777667775   22    33455555555543321    1


Q ss_pred             -C---CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEE
Q 021491          110 -S---NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       110 -~---~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                       +   .-......+.|.+...  --..|.+...-.+.+|.+.
T Consensus        77 ~~~~~~v~rEl~liKv~~~~~--~r~~i~~~~~~fra~ivdv  116 (164)
T 2f1f_A           77 LGQGAHVEREIMLVKIQASGY--GRDEVKRNTEIFRGQIIDV  116 (164)
T ss_dssp             GGGSCEEEEEEEEEEEECCTH--HHHHHHHHHHHTTCEEEEE
T ss_pred             cCCcccceeEEEEEEEECCcc--cHHHHHHHHHHcCCEEEEE
Confidence             1   1122445667766432  2355666666667666654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.70  E-value=0.017  Score=48.54  Aligned_cols=110  Identities=10%  Similarity=0.100  Sum_probs=71.4

Q ss_pred             CeEEEEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEEcc---CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          115 GLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWTH---NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       115 ~~t~i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~T~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      +.+.|+|. .+|+||++++|...|+++|+||..-.....   .|...-.|.|.. .      +.   ++..+.|.+ +..
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~-~------~~---~~a~~~L~~-~~~   83 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR-D------VG---PAAVEKLDS-LRN   83 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET-T------TH---HHHHHHHHH-THH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh-h------HH---HHHHHHHHH-HHH
Confidence            45666665 489999999999999999999975543322   355556677764 1      11   222233332 111


Q ss_pred             CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHH
Q 021491          191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCT  267 (311)
Q Consensus       191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~  267 (311)
                      +..                                        ...|.++    .+...+.|.|.   ++||+.+++.++
T Consensus        84 el~----------------------------------------~~~v~~~----~~va~VsvVG~gm~~~~Gvaa~~f~a  119 (181)
T 3s1t_A           84 EIG----------------------------------------FSQLLYD----DHIGKVSLIGAGMRSHPGVTATFCEA  119 (181)
T ss_dssp             HHC----------------------------------------CSEEEEE----SCEEEEEEEEECCTTCHHHHHHHHHH
T ss_pred             hcC----------------------------------------cceEEEe----CCEEEEEEEecccccCchHHHHHHHH
Confidence            000                                        0122222    24567777765   899999999999


Q ss_pred             hhcCCeEEEEEE
Q 021491          268 LTDMEYVVFHAT  279 (311)
Q Consensus       268 l~~~gi~I~~A~  279 (311)
                      |++.||||....
T Consensus       120 La~~~InI~~Is  131 (181)
T 3s1t_A          120 LAAVGVNIELIS  131 (181)
T ss_dssp             HHHTTCCCCEEE
T ss_pred             HHHCCCcEEEEE
Confidence            999999998877

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.67  E-value=0.0072  Score=51.31  Aligned_cols=64  Identities=17%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE-ccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW-THN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~-T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ...|+|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.|.. .       +..+++|.+.|.++
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g-~-------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-D-------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-C-------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC-C-------HHHHHHHHHHhcCc
Confidence            56899999999999999999999999999998886 444 55555666764 1       24567888887763

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.62  E-value=0.0043  Score=53.20  Aligned_cols=111  Identities=11%  Similarity=0.060  Sum_probs=74.2

Q ss_pred             CCCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEE---cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC
Q 021491           32 CPTATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISS---DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY  107 (311)
Q Consensus        32 ~~~~t~V~V~-~~DrpGL~~~i~~~L~~~glnI~~A~i~t---~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~  107 (311)
                      ..+...|+|. .+|+||+.+++.++|++.|+||---....   .++..-..|.+...+.     +...+.+++ +.....
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~-----~~~~~~l~~-~~~~~~  105 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG-----PAAVEKLDS-LRNEIG  105 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH-----HHHHHHHHT-THHHHC
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH-----HHHHHHHHH-HHhhhc
Confidence            3467788886 69999999999999999999998654432   3455666688764211     122222222 221111


Q ss_pred             CC-CCCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEE
Q 021491          108 GR-SNSFNGLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAK  148 (311)
Q Consensus       108 rr-~~~~~~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~  148 (311)
                      .. -....+...|.|++   ..+||+.+++.++|++.|+||..-.
T Consensus       106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            00 01234567788876   6899999999999999999998664

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.60  E-value=0.038  Score=52.57  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             eEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEEc---CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491           35 ATLVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISSD---GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (311)
Q Consensus        35 ~t~V~V~-~~DrpGL~~~i~~~L~~~glnI~~A~i~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~  110 (311)
                      .+.|+|. .+|+||.++++...|+++|+||.--...+.   +|...-.|.|...  .   .++..+.|++ +..+....+
T Consensus       264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~--~---~~~a~~~l~~-~~~~~~~~~  337 (421)
T 3ab4_A          264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS--D---GRRAMEILKK-LQVQGNWTN  337 (421)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT--T---HHHHHHHHHH-HHTTTTCSE
T ss_pred             EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech--h---HHHHHHHHHH-HHHHcCCce
Confidence            3456666 689999999999999999999987655443   4555556877631  1   1233344443 222111000


Q ss_pred             -CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEE
Q 021491          111 -NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       111 -~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                       ....+...+.|++.   ++||.++++..+|++.|+||..-
T Consensus       338 v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          338 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             EEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             EEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence             12345677899985   79999999999999999999833

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.55  E-value=0.002  Score=53.24  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=34.2

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCC
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE  285 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~  285 (311)
                      .|+|.|.||+|||++|+.+|++.++||..+.+.+.|.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~   38 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR   38 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE
Confidence            3789999999999999999999999999999988754

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.47  E-value=0.011  Score=49.04  Aligned_cols=104  Identities=8%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-Ec-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC----C
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SD-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----R  109 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----r  109 (311)
                      ..+.|...|+||+|++++++|+..|+||.+..+. +. .|...-+|.+..   .    +...+.|.+.|..-...    +
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~---d----~~~leql~kQL~Kl~dV~~V~~   77 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG---P----DEIVEQITKQLNKLIEVVKLID   77 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE---C----HHHHHHHHHHHHHSTTEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec---c----HHHHHHHHHHhcCCCCEEEEEE
Confidence            5789999999999999999999999999999997 44 477776677752   2    34455555555543321    1


Q ss_pred             -C---CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEE
Q 021491          110 -S---NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAK  148 (311)
Q Consensus       110 -~---~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~  148 (311)
                       +   .-......+.|.+...  --..|.+...-.+.+|.+..
T Consensus        78 ~~~~~~v~rEl~liKv~~~~~--~r~~i~~~~~~fra~ivdv~  118 (165)
T 2pc6_A           78 LSSEGYVERELMLVKVRAVGK--DREEMKRLADIFRGNIIDVT  118 (165)
T ss_dssp             GGGSCEEEEEEEEEEEECCTH--HHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCcceeeeEEEEEEEeCCcc--cHHHHHHHHHHcCCEEEEEc
Confidence             1   1122445667765432  23556666666776776653

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.23  E-value=0.016  Score=47.60  Aligned_cols=59  Identities=24%  Similarity=0.324  Sum_probs=45.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      .|+|.|.||+|+|++|+++|+.+++||....+.+. |.    +++.- + .   .+.+.+..|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~-~-~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNF-A-E---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEE-C-C---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEE-E-e---CCHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999776 32    44544 1 1   124566777777665

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.05  E-value=0.013  Score=50.59  Aligned_cols=60  Identities=10%  Similarity=0.058  Sum_probs=42.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc-----CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD-----GRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~-----~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ..+.|.+.||||+|++++.+|++++.||...+..+.     +|.+.-.+.+.+.     ..+++.+.|++
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~-----~Le~LL~kLrk   69 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG-----DFEKILERVKT   69 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS-----CHHHHHHHHHT
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC-----CHHHHHHHHhC
Confidence            568899999999999999999999999999999873     5676655555432     22455555553

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.01  E-value=0.0088  Score=51.61  Aligned_cols=48  Identities=15%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-----ceEEEEEEEE
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-----GRIASLIYVK  163 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-----~~~~d~F~V~  163 (311)
                      ...|.|.+.||||+|++|+++|+++++||...+..+..     +.+.-.+.+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            46789999999999999999999999999999998853     3555444443

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.90  E-value=0.05  Score=46.09  Aligned_cols=103  Identities=12%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-EcC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC----
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDG-RFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----  108 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----  108 (311)
                      ...+.|...|+||.|++++++|+..|+||.+-.+. |.+ |..--++.|...       +...+.|.+.|......    
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidVikV~  101 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEVVKVT  101 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTEEEEE
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCceEEEE
Confidence            35799999999999999999999999999998887 544 666656677532       23455566656543210    


Q ss_pred             -CCC-----CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEE
Q 021491          109 -RSN-----SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEA  147 (311)
Q Consensus       109 -r~~-----~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A  147 (311)
                       -++     -......+.|.+...   -..|.+...-.+.+|.+.
T Consensus       102 dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv  143 (193)
T 2fgc_A          102 PIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDV  143 (193)
T ss_dssp             ECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEE
T ss_pred             EecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEE
Confidence             011     122345667766442   667777777777777665

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.83  E-value=0.17  Score=48.07  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=70.4

Q ss_pred             EEEEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEEcc---CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491          117 TALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWTH---NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN  192 (311)
Q Consensus       117 t~i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~T~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (311)
                      +.|+|. .+|+||.+++|.+.|+++|+||..-...|.   .|...-.|.|.. .      +.   ++..+.|.+ +..+.
T Consensus       265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~-~------~~---~~a~~~l~~-~~~~~  333 (421)
T 3ab4_A          265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR-S------DG---RRAMEILKK-LQVQG  333 (421)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET-T------TH---HHHHHHHHH-HHTTT
T ss_pred             EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec-h------hH---HHHHHHHHH-HHHHc
Confidence            456666 589999999999999999999987655443   233445566653 1      12   222233333 22211


Q ss_pred             CcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHhh
Q 021491          193 DIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTLT  269 (311)
Q Consensus       193 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l~  269 (311)
                      ..                                        ..|.++    .+..++.|.+.   ++||+++++.++|+
T Consensus       334 ~~----------------------------------------~~v~~~----~~~a~vsvVG~gm~~~~Gv~a~~f~aL~  369 (421)
T 3ab4_A          334 NW----------------------------------------TNVLYD----DQVGKVSLVGAGMKSHPGVTAEFMEALR  369 (421)
T ss_dssp             TC----------------------------------------SEEEEE----CCEEEEEEECGGGTSCTTHHHHHHHHHH
T ss_pred             CC----------------------------------------ceEEEe----CCeEEEEEEccCcccCccHHHHHHHHHH
Confidence            10                                        112222    24667888875   89999999999999


Q ss_pred             cCCeEEEEEE
Q 021491          270 DMEYVVFHAT  279 (311)
Q Consensus       270 ~~gi~I~~A~  279 (311)
                      +.||||....
T Consensus       370 ~~~InI~~is  379 (421)
T 3ab4_A          370 DVNVNIELIS  379 (421)
T ss_dssp             HTTCCCCEEE
T ss_pred             HCCCCEEEEE
Confidence            9999998553

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.49  E-value=0.068  Score=45.63  Aligned_cols=112  Identities=10%  Similarity=0.121  Sum_probs=70.4

Q ss_pred             CCCeEEEEEEe-CCcccHHHHHHHHHHhCCCeEEEEEEEcc---CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          113 FNGLTALELTG-TDRVGLLSEVFAVLADLQCSVVEAKVWTH---NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       113 ~~~~t~i~V~~-~DrpGLL~~I~~~L~~~glnI~~A~i~T~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      ..+...|+|.+ +|+||++++|-+.|++.|+||..--....   ++.....|.+..          ...++..+.|.+. 
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~----------~d~~~~~~~l~~~-  100 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR----------DVGPAAVEKLDSL-  100 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG----------GGHHHHHHHHHTT-
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch----------hhHHHHHHHHHHH-
Confidence            34667788874 89999999999999999999976433321   234555676654          1112222222211 


Q ss_pred             cCCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEE---EeCCccchHHHHH
Q 021491          189 KGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNV---QCKDRTKLLFDVV  265 (311)
Q Consensus       189 ~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v---~~~DRpGLL~~I~  265 (311)
                      ..+..                                        ...|.+++    +...+.|   -.+.+||+.+++-
T Consensus       101 ~~~~~----------------------------------------~~~v~~~~----~iakVSvVG~GM~~~~GVaak~F  136 (200)
T 4go7_X          101 RNEIG----------------------------------------FSQLLYDD----HIGKVSLIGAGMRSHPGVTATFC  136 (200)
T ss_dssp             HHHHC----------------------------------------CSEEEEEC----CEEEEEEEEESCTTCHHHHHHHH
T ss_pred             Hhhhc----------------------------------------eeeEEEec----CeeeeeeeccccccCCCcHHHHH
Confidence            00000                                        11222222    2334444   4668999999999


Q ss_pred             HHhhcCCeEEEEEE
Q 021491          266 CTLTDMEYVVFHAT  279 (311)
Q Consensus       266 ~~l~~~gi~I~~A~  279 (311)
                      ++|++.||||....
T Consensus       137 ~aLa~~~INI~mIs  150 (200)
T 4go7_X          137 EALAAVGVNIELIS  150 (200)
T ss_dssp             HHHHHTTCCCCEEE
T ss_pred             HHHHHCCCCEEEEE
Confidence            99999999998875

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=93.75  E-value=0.58  Score=44.73  Aligned_cols=119  Identities=11%  Similarity=0.150  Sum_probs=73.5

Q ss_pred             EEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCC
Q 021491           36 TLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNS  112 (311)
Q Consensus        36 t~V~V~~---~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~  112 (311)
                      +.|+|..   ++.||+.+++..+|+.+|++|.-..  +...  --.|.|...+-.. ....+.+.++..+....   -..
T Consensus       299 ~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~~~~--~is~~V~~~d~~~-~~~~~~~el~~~~~~~~---v~v  370 (446)
T 3tvi_A          299 TVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--SGVD--SVSLVIEDCKLDG-KCDKIIEEIKKQCNPDS---IEI  370 (446)
T ss_dssp             EEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--EETT--EEEEEEEHHHHTT-THHHHHHHHHHHSCCSE---EEE
T ss_pred             EEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--cCCC--EEEEEEecchHHH-HHHHHHHHHHHhcCCCc---EEE
Confidence            4466664   6899999999999999999997432  2222  2237775422110 01223333433322110   012


Q ss_pred             CCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          113 FNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       113 ~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      ..+...|.|++.   .+||+.+++.++|++.|+||....-.|..-  --.|.|..
T Consensus       371 ~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei--~Is~vV~~  423 (446)
T 3tvi_A          371 HPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEI--NVIVGVET  423 (446)
T ss_dssp             EEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTT--EEEEEEEG
T ss_pred             eCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCc--eEEEEEcH
Confidence            346778999975   589999999999999999998655434322  23455654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=93.25  E-value=0.21  Score=47.25  Aligned_cols=50  Identities=12%  Similarity=0.080  Sum_probs=44.0

Q ss_pred             eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEec
Q 021491          247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQF  296 (311)
Q Consensus       247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~  296 (311)
                      ...+-+.-.|+||.+..|+.+|.++||||......|.|+.|.=++-+.+.
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~  380 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEAD  380 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCC
Confidence            44577889999999999999999999999999999999999888766553

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.70  E-value=0.31  Score=46.01  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=44.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      +...|.+.-.|+||.+.+|+.+|.++|+||......+.|+.+.-++.+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            45678888999999999999999999999999999998888888887764

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.18  E-value=0.61  Score=45.53  Aligned_cols=51  Identities=16%  Similarity=0.156  Sum_probs=42.2

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEe
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKD  164 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~  164 (311)
                      +....+.+.-+|+||.+.+|+..|.++|+||...++...  ++.+.-++.+..
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~  504 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ  504 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC
Confidence            346778888999999999999999999999999999865  566665665543

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=91.21  E-value=0.79  Score=37.05  Aligned_cols=113  Identities=13%  Similarity=0.126  Sum_probs=68.0

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491           34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS  110 (311)
Q Consensus        34 ~~t~V~V~~---~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~  110 (311)
                      +...|+|.+   ++.||..+++..+|++.|+||..-.  +...  --.|+|.+.+    ...++.+    .|.....  -
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~----~~~~il~----~l~~~~~--v   82 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK----NLPDIVR----ALSDIGD--V   82 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT----THHHHHH----HHTTTEE--E
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH----HHHHHHH----HHhccCe--E
Confidence            566788874   5789999999999999999996433  2222  2346665321    1122222    2322110  0


Q ss_pred             CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       111 ~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      ....+...|.|.+.   ++||+.+++..+|+  |+||....-.+..  .--.|.|..
T Consensus        83 ~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se--~~is~vv~~  135 (157)
T 3mah_A           83 TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSN--YNVSVLVKA  135 (157)
T ss_dssp             EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSS--SCEEEEEEG
T ss_pred             EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCC--CEEEEEEcH
Confidence            11235678888875   68999999999999  9998765433332  233466654

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=90.71  E-value=1.6  Score=41.73  Aligned_cols=107  Identities=9%  Similarity=0.147  Sum_probs=67.2

Q ss_pred             eEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491          116 LTALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN  192 (311)
Q Consensus       116 ~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (311)
                      .+.|+|.+   ++.||++++|...|+++|+||..-.  + + ...-.|.|.. .+-.     .....+.+.|.+.+.   
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~-~-~~~is~~V~~-~d~~-----~~~~~~~~el~~~~~---  364 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--S-G-VDSVSLVIED-CKLD-----GKCDKIIEEIKKQCN---  364 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--E-E-TTEEEEEEEH-HHHT-----TTHHHHHHHHHHHSC---
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--c-C-CCEEEEEEec-chHH-----HHHHHHHHHHHHhcC---
Confidence            44577775   5899999999999999999997532  2 1 1233466654 1000     011222222222110   


Q ss_pred             CcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHhh
Q 021491          193 DIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTLT  269 (311)
Q Consensus       193 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l~  269 (311)
                                                               +..|.+++    +...+.|.+.   .+||+.+++-++|+
T Consensus       365 -----------------------------------------~~~v~v~~----~vA~VSvVG~gM~~~~Gvaarif~aLa  399 (446)
T 3tvi_A          365 -----------------------------------------PDSIEIHP----NMALVATVGTGMAKTKGIANKIFTALS  399 (446)
T ss_dssp             -----------------------------------------CSEEEEEE----EEEEEEEECGGGSSCTTHHHHHHHHHH
T ss_pred             -----------------------------------------CCcEEEeC----CeEEEEEECCCccCChhHHHHHHHHHH
Confidence                                                     11223322    4668888876   59999999999999


Q ss_pred             cCCeEEEEEEE
Q 021491          270 DMEYVVFHATI  280 (311)
Q Consensus       270 ~~gi~I~~A~I  280 (311)
                      +.||||....-
T Consensus       400 ~~~InI~mIsq  410 (446)
T 3tvi_A          400 KENVNIRMIDQ  410 (446)
T ss_dssp             HTTCCEEEEEE
T ss_pred             HCCCCEEEEEe
Confidence            99999987653

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=90.46  E-value=3.8  Score=39.76  Aligned_cols=137  Identities=14%  Similarity=0.164  Sum_probs=81.2

Q ss_pred             eEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCC-cHHHHHHHHHHhhhccCCCC
Q 021491           35 ATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLT-DESVISYIEQSLETIHYGRS  110 (311)
Q Consensus        35 ~t~V~V~~---~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~-~~~~~~~l~~~L~~~~~rr~  110 (311)
                      .+.|+|.+   +++||+.+++..+|+++|+||.--.  +...  --+|.|...+..... ..+..+.+.+.|.....  -
T Consensus       341 ~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--sse~--sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~--v  414 (510)
T 2cdq_A          341 VTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSEV--SISLTLDPSKLWSRELIQQELDHVVEELEKIAV--V  414 (510)
T ss_dssp             EEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EETT--EEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSE--E
T ss_pred             eEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eCCC--eEEEEEechHhhhhhHHHHHHHHHHHHhCCCCe--E
Confidence            34566664   6799999999999999999998662  2222  123666432211110 12233334333432110  0


Q ss_pred             CCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491          111 NSFNGLTALELTGT--DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL  188 (311)
Q Consensus       111 ~~~~~~t~i~V~~~--DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  188 (311)
                      ....+...|.|++.  ..||+.+++..+|++.|+||..-.-.+.  ..--.|.|..          +..++.-+.|++.+
T Consensus       415 ~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsS--ei~Is~vV~~----------~d~~~Av~aLH~~f  482 (510)
T 2cdq_A          415 NLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGAS--KVNISFIVNE----------AEAEGCVQALHKSF  482 (510)
T ss_dssp             EEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTT--CSEEEEEEEH----------HHHHHHHHHHHHHH
T ss_pred             EEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCC--cceEEEEEeH----------HHHHHHHHHHHHHH
Confidence            12336678888887  7889999999999999999986533222  2233466654          33344445555554


Q ss_pred             c
Q 021491          189 K  189 (311)
Q Consensus       189 ~  189 (311)
                      .
T Consensus       483 ~  483 (510)
T 2cdq_A          483 F  483 (510)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=89.42  E-value=0.46  Score=42.63  Aligned_cols=51  Identities=6%  Similarity=-0.003  Sum_probs=40.1

Q ss_pred             ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF  296 (311)
Q Consensus       246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~  296 (311)
                      ..|.|-+..+|+||-||++...|+.+|||+.+..-.-.+.+ -+=.|||.-.
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e  250 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI  250 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe
Confidence            35666667789999999999999999999999988765544 5556766543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=89.41  E-value=1.5  Score=41.48  Aligned_cols=49  Identities=12%  Similarity=0.102  Sum_probs=44.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEE
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK  163 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~  163 (311)
                      +...|.+.-.|.||.|.+|..+|+++|+||......|.|+.++-+.-|.
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            5679999999999999999999999999999999999998888777665

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.26  E-value=1.9  Score=42.01  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=48.1

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      .+..+.+.-+|+||...+++..|.++|+||...++..  .+|.++-++.+.+    +++ +++.+.|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~----~~~-~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ----DVP-DDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS----CCC-HHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC----CCC-HHHHHHHhc
Confidence            4567888999999999999999999999999999985  4677776666642    222 456666664

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=88.53  E-value=1.5  Score=40.07  Aligned_cols=44  Identities=9%  Similarity=-0.010  Sum_probs=34.7

Q ss_pred             CccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCC
Q 021491          256 DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSN  299 (311)
Q Consensus       256 DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~  299 (311)
                      |+||-||++...|+.+|||+.+..-.-.+.+-.+-+|.-|-+|.
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~  260 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA  260 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC
Confidence            89999999999999999999999888666665444444455554

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=87.57  E-value=0.67  Score=42.19  Aligned_cols=50  Identities=10%  Similarity=0.090  Sum_probs=38.9

Q ss_pred             ceeEEEEEeC-CccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEe
Q 021491          246 SYSVVNVQCK-DRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQ  295 (311)
Q Consensus       246 ~~tvl~v~~~-DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~  295 (311)
                      ..|.|-+..+ |+||-||++...|+.+|||+.+..-.-.+.+ -+=.|||.-
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  251 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA  251 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence            4677777775 9999999999999999999998888755444 344566653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.90  E-value=1.4  Score=41.60  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=44.3

Q ss_pred             ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEE
Q 021491          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCY  294 (311)
Q Consensus       246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~  294 (311)
                      ..+.+-+.-+|+||.|.+|+.+|++.|+||..-.-.|.|+.++-+.-|.
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            4568889999999999999999999999999999999999998776654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=86.43  E-value=0.58  Score=44.70  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEE
Q 021491          246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATI  280 (311)
Q Consensus       246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I  280 (311)
                      ..+-+.+...|+||.|.+|+.+|.++||+|.+..=
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            45578999999999999999999999999988653

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=86.01  E-value=1.1  Score=39.89  Aligned_cols=51  Identities=10%  Similarity=-0.033  Sum_probs=40.3

Q ss_pred             ceeEEEEEe---CCccchHHHHHHHhhcCCeEEEEEEEEecCC-eEEEEEEEEec
Q 021491          246 SYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLVINCYQF  296 (311)
Q Consensus       246 ~~tvl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~-~a~D~F~v~~~  296 (311)
                      ..|.|-+..   +|+||-||++...|+.+|||+.+..-.-.+. .-+=.|||.-.
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence            456666677   8999999999999999999999998875544 35566777544

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=84.85  E-value=7.2  Score=35.56  Aligned_cols=44  Identities=14%  Similarity=0.121  Sum_probs=34.6

Q ss_pred             CcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCC
Q 021491          125 DRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSP  170 (311)
Q Consensus       125 DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~  170 (311)
                      |+||-|+++.+.|+.+|+|+..-.-.-.. +...-.|||.-  +|..
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~  261 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAAP  261 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSCT
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCCc
Confidence            79999999999999999999877666554 44566788875  3553

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=84.67  E-value=3.9  Score=36.54  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=46.2

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      .|.|.+..+|+||-|+++.+.|+.+|+|+..-+-.-.. +...-.|||.-  +|.. .+    +.+++.|.+
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~~-~d----~~v~~aL~~  264 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGHR-ED----QNVHNALEN  264 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESCT-TS----HHHHHHHHH
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecCC-Cc----HHHHHHHHH
Confidence            45666666899999999999999999999877776554 34566788876  3543 23    345566554

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=82.42  E-value=5.1  Score=36.31  Aligned_cols=50  Identities=12%  Similarity=0.068  Sum_probs=38.6

Q ss_pred             CeEEEEEEeC-CcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          115 GLTALELTGT-DRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       115 ~~t~i~V~~~-DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      ..|.|.+..+ |+||-|+++.+.|+.+|+|+..-+-.-.. +...-.|||.-
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  251 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA  251 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence            4566667775 99999999999999999999776666443 33455788875

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=82.19  E-value=6.1  Score=34.93  Aligned_cols=50  Identities=18%  Similarity=0.147  Sum_probs=38.9

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          115 GLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       115 ~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      ..|.|.+..   +|+||-|+++.+.|+.+|+|+..-+-.-.. +...-.|||.-
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  238 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA  238 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence            345555555   899999999999999999999877776553 34566788886

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=80.84  E-value=3.8  Score=39.03  Aligned_cols=51  Identities=22%  Similarity=0.241  Sum_probs=35.9

Q ss_pred             CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEe
Q 021491          114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKD  164 (311)
Q Consensus       114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~  164 (311)
                      ...+-+.+...|+||.|++|+++|.++|++|.+..-.-..  +....+..++.
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th  409 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH  409 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence            3556788999999999999999999999999887654321  11234455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	311
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	6e-05
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	0.001

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.6 bits (90), Expect = 6e-05
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASL---IYVKDCNSGSPIE 172
           L  L +   +++G+L ++  ++A+   ++  A+ +            IY +         
Sbjct: 1   LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG----- 55

Query: 173 DSQQIDRIEARLRNV 187
                ++I  R++  
Sbjct: 56  ---DFEKILERVKTF 67

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQID 178
           +   GTDR G+ +EV  ++    C+++++++         L+ +              I 
Sbjct: 8   ITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS--------GSPSNIT 59

Query: 179 RIEARLRNV 187
           R+E  L  +
Sbjct: 60  RVETTLPLL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.93
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.72
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.68
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.66
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.34
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.2
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.98
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.86
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.76
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.75
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.71
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.54
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.53
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.49
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.46
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.44
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.44
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.39
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.01
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.94
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.54
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.52
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.1
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	94.6
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	93.9
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	92.5
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	90.24
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	89.42
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	88.96
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	87.45
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.65
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.09
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	80.37

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.93  E-value=4.6e-09  Score=76.79  Aligned_cols=72  Identities=21%  Similarity=0.439  Sum_probs=60.6

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN  192 (311)
Q Consensus       113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  192 (311)
                      ..++++|++.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|+. +       +..+++|++.|.. |.++.
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~-~-------~~~~~~l~~~L~~-l~~~l   72 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S-------PSNITRVETTLPL-LGQQH   72 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C-------HHHHHHHHHHHHH-HHHHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc-C-------cccHHHHHHHHHH-HHHHh
Confidence            4578899999999999999999999999999999999999999988888876 1       3567888888876 44433


Q ss_pred             C
Q 021491          193 D  193 (311)
Q Consensus       193 ~  193 (311)
                      +
T Consensus        73 ~   73 (86)
T d1u8sa1          73 D   73 (86)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.72  E-value=5.8e-08  Score=70.72  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEE
Q 021491           33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT   82 (311)
Q Consensus        33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~   82 (311)
                      ..+..|++.|+||||++++++++|+++|+||.+++..+.+|.+.-.+.|.
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            45789999999999999999999999999999999999898888777775

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.68  E-value=7.6e-08  Score=69.51  Aligned_cols=63  Identities=11%  Similarity=0.232  Sum_probs=52.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ++|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.. +.+  .    ..+.|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~-~~~--~----~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-DEK--Q----DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SSC--C----CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEE-ecC--C----CHHHHHHHHHH
Confidence            689999999999999999999999999999999998888887777776 222  1    13667787775

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.66  E-value=1.1e-07  Score=68.72  Aligned_cols=63  Identities=14%  Similarity=0.151  Sum_probs=50.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      ..|++.|+||||+.++++++|+++|+||.+.+.++.++.+.-.+.+..+.+.  +.+.+.+.|+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~--~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ--DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC--CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC--CHHHHHHHHHH
Confidence            4789999999999999999999999999999999988887777777654332  22455555554

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.34  E-value=6.4e-07  Score=65.93  Aligned_cols=65  Identities=14%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc--------eEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG--------RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~--------~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ....|.|.|+|||||+++|+++|+++|+||.+.+-.|..+        .+.-.+.+..| .+      ..+..|++.|..
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p-~~------~~~~~l~~~l~~   77 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SG------CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TT------SCHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcC-cc------ccHHHHHHHHHH
Confidence            4567889999999999999999999999999998877532        23333333331 11      234678888775

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.20  E-value=1.7e-06  Score=63.56  Aligned_cols=46  Identities=11%  Similarity=0.004  Sum_probs=37.2

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCC----eEEEEEEEE
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE----RAYLVINCY  294 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~----~a~D~F~v~  294 (311)
                      .+.|.|+|||||+++|+++|+++|+||..+.-.|+..    ...+.|+++
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~   57 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA   57 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEE
Confidence            6788999999999999999999999999999888643    345567654

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.98  E-value=1.5e-05  Score=55.39  Aligned_cols=47  Identities=13%  Similarity=0.162  Sum_probs=42.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      +|.|..+|+||-|++++++|.+.|+||++...+..++++.-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999988888887787765

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.86  E-value=3.4e-05  Score=53.45  Aligned_cols=47  Identities=15%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEe
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD   83 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~   83 (311)
                      +|.|..+|+||-|++++.+|.+.|+||.....+...++.+-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47888999999999999999999999999999987788888888854

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.76  E-value=6.9e-05  Score=51.67  Aligned_cols=47  Identities=19%  Similarity=0.183  Sum_probs=40.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEE
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT   82 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~   82 (311)
                      -++.|+..|+||.|++++++|+..|+||.+-.+....+..+-.+.|.
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            36899999999999999999999999999999886666666566654

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.75  E-value=7.5e-05  Score=51.50  Aligned_cols=47  Identities=21%  Similarity=0.102  Sum_probs=39.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      +++|...|+||.|++++++|++.|+||.+..+....+...-.+.+.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            58999999999999999999999999999999877666555554443

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=0.00014  Score=51.11  Aligned_cols=48  Identities=17%  Similarity=0.158  Sum_probs=40.6

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEE
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYV  162 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V  162 (311)
                      ..+.+.+.-.|+||.+++|+.+|+++|+||...++.+.  ++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            34678888999999999999999999999999999875  5667665554

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=0.00039  Score=48.75  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491           35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ  100 (311)
Q Consensus        35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (311)
                      .+.+.+.-.|+||.+++++.+|++.|+||....+.+  .+|.++-++.+   ++. + ++++.+.|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v---D~~-~-~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQD-V-PDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SSC-C-CHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc---CCC-c-cHHHHHHHHc
Confidence            357888899999999999999999999999999976  56777755555   222 2 2556677765

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.53  E-value=6.9e-05  Score=52.68  Aligned_cols=50  Identities=10%  Similarity=0.053  Sum_probs=35.7

Q ss_pred             EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--C-CeEEEEEEEEecCC
Q 021491          249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--G-ERAYLVINCYQFDS  298 (311)
Q Consensus       249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g-~~a~D~F~v~~~~g  298 (311)
                      -+.|.+.||||+|.+|+.+|++.|+||.+....+.  | ....=.|++.+.++
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~   55 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG   55 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcc
Confidence            58899999999999999999999999999987763  2 22344666666543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.49  E-value=0.00029  Score=49.25  Aligned_cols=63  Identities=13%  Similarity=0.167  Sum_probs=49.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ..+.+...|+||.|++|++.|+..|+||.+..+...  .|...-++.+..        +++.++++...|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCC
Confidence            468899999999999999999999999999999854  345555565554        246677777777753

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.00035  Score=48.95  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491          116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN  186 (311)
Q Consensus       116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  186 (311)
                      ...+.+...|+||+|++|++.|+..|+||.+..+....  |...-++.+..    .    ++.++++.+.|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g----~----~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----D----DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----C----TTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc----C----HHHHHHHHHHHhC
Confidence            35789999999999999999999999999999987653  44444455543    1    2445666666543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00063  Score=48.29  Aligned_cols=49  Identities=16%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEE
Q 021491          115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK  163 (311)
Q Consensus       115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~  163 (311)
                      ....+.+.-.|+||.|++|+++|+++|+||.+....+.++....+..+.
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~   58 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE   58 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEE
Confidence            4467888899999999999999999999999999988765444444443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.44  E-value=4.6e-05  Score=53.62  Aligned_cols=47  Identities=9%  Similarity=-0.005  Sum_probs=34.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEE--EEEEEEEe
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFF--MDVFHVTD   83 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~--~d~f~v~~   83 (311)
                      .|.|.+.||||+|++++.+++++|.||......+ .+|.+  .-.+++.+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            5889999999999999999999999999999887 44433  33455654

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00047  Score=48.03  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=46.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-C-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491          117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-N-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV  187 (311)
Q Consensus       117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  187 (311)
                      ..+.+...|+||+|+++++.|+..|+||.+..+.-. . +...-++.+..        +++.++++...|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~--------~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhCC
Confidence            358899999999999999999999999999999854 3 33333333332        245667777777653

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.0011  Score=46.41  Aligned_cols=47  Identities=15%  Similarity=0.167  Sum_probs=38.2

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-E-cCCEEEEEEEEE
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-S-DGRFFMDVFHVT   82 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t-~~g~~~d~f~v~   82 (311)
                      ..+.++..|+||+++++++.|+..|+||.+-.+. | ..|..--++.+.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~   52 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK   52 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE
Confidence            4689999999999999999999999999999987 4 445544444443

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.006  Score=42.93  Aligned_cols=41  Identities=12%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCE
Q 021491           34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRF   74 (311)
Q Consensus        34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~   74 (311)
                      +...+++.-+|+||.+++|+.+|++.|+||.+....+.++.
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~   50 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQM   50 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCC
Confidence            34688888999999999999999999999999888775543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.54  E-value=0.0039  Score=43.27  Aligned_cols=47  Identities=9%  Similarity=0.111  Sum_probs=39.1

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-E-cCCEEEEEEEEE
Q 021491           36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-S-DGRFFMDVFHVT   82 (311)
Q Consensus        36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t-~~g~~~d~f~v~   82 (311)
                      ..+.++..|+||.|+++++.|+..|+||.+-.+. | ..|..--++.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~   51 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN   51 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE
Confidence            3578999999999999999999999999999997 5 446665555554

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0044  Score=42.86  Aligned_cols=40  Identities=13%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-EcC-CEEE
Q 021491           37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDG-RFFM   76 (311)
Q Consensus        37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~~-g~~~   76 (311)
                      .++++..|+||+++++++.|+..|+||.+-.+. |.+ |..-
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR   44 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSR   44 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEE
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeE
Confidence            578999999999999999999999999999987 543 5443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.10  E-value=0.0065  Score=44.08  Aligned_cols=55  Identities=11%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             CCceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEecCCC
Q 021491          244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQFDSN  299 (311)
Q Consensus       244 s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~~g~  299 (311)
                      ....|.|-+..+|+||-|+++...|+++|||+....-.-.+.. -+=.|||. -+|+
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id-~eg~   68 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTY-LDKR   68 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEEC-BCGG
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEE-cccC
Confidence            3456777888899999999999999999999988877654433 34457775 4453

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.60  E-value=0.03  Score=38.84  Aligned_cols=45  Identities=11%  Similarity=0.010  Sum_probs=35.3

Q ss_pred             EEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491          252 VQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF  296 (311)
Q Consensus       252 v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~  296 (311)
                      +...|+||-|+++...|+++|||+.+..-.-.+.+ -+=.|||.-.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~   52 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD   52 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEe
Confidence            34569999999999999999999999888754433 4555777664

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.90  E-value=0.23  Score=34.10  Aligned_cols=43  Identities=16%  Similarity=0.136  Sum_probs=34.3

Q ss_pred             EeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491          122 TGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD  164 (311)
Q Consensus       122 ~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~  164 (311)
                      ...|+||-|+++.+.|+++|+|+..-.-.-.. ....=.|||.-
T Consensus         8 ~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           8 PMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             ESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             eCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            34699999999999999999999877666543 33455788986

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.50  E-value=0.16  Score=36.36  Aligned_cols=52  Identities=13%  Similarity=0.171  Sum_probs=39.9

Q ss_pred             CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491          113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD  164 (311)
Q Consensus       113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~  164 (311)
                      ....|.|.+..+|+||-|+++...|+.+|+|+..-.-... +....-.|||.-
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            3456777777899999999999999999999976666544 333444688875

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=90.24  E-value=0.88  Score=29.78  Aligned_cols=45  Identities=7%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             EEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          118 ALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       118 ~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      .|.+.+   .++||+.+++..+|++.|+||..-...+..  .--.|.|..
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeH
Confidence            577877   589999999999999999999866554432  334577765

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=89.42  E-value=0.36  Score=31.78  Aligned_cols=59  Identities=12%  Similarity=0.118  Sum_probs=39.3

Q ss_pred             EEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 021491           37 LVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL  102 (311)
Q Consensus        37 ~V~V~~---~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (311)
                      .|++.+   +++||+.+++..+|++.|+||.--...+..-..  .|.|.+.+.     ++..+.|++++
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~I--s~~V~~~d~-----~~Av~~Lh~~F   64 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNI--SFVIDEKDL-----LNCVRKLHEKF   64 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEE--EEEEEGGGH-----HHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceE--EEEEeHHHH-----HHHHHHHHHHH
Confidence            466765   689999999999999999999855443333222  377764321     34555555544

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.96  E-value=0.27  Score=34.58  Aligned_cols=35  Identities=9%  Similarity=0.168  Sum_probs=31.0

Q ss_pred             ceeEEEEEe---CCccchHHHHHHHhhcCCeEEEEEEE
Q 021491          246 SYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATI  280 (311)
Q Consensus       246 ~~tvl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~I  280 (311)
                      +.+.+.|.+   .++||++++|-.+|++.||||.....
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~   49 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT   49 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence            467899986   49999999999999999999998863

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=87.45  E-value=1.3  Score=31.40  Aligned_cols=48  Identities=13%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491          115 GLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD  164 (311)
Q Consensus       115 ~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~  164 (311)
                      +...|+|.+   +++||+.+++..+|++.|+||..-...+..  .--.|.|..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se--~~Isf~V~~   64 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSE   64 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEECS
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc--ceEEEEEeH
Confidence            556889987   699999999999999999999875544332  233566654

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.65  E-value=0.37  Score=33.82  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=30.6

Q ss_pred             CeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEE
Q 021491          115 GLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAKV  149 (311)
Q Consensus       115 ~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i  149 (311)
                      +.+.|+|.+   .++||+++++..+|++.|+||..-..
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~   49 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT   49 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence            567889987   49999999999999999999987653

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.09  E-value=0.71  Score=32.79  Aligned_cols=64  Identities=8%  Similarity=0.088  Sum_probs=43.9

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhh
Q 021491           34 TATLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET  104 (311)
Q Consensus        34 ~~t~V~V~~---~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (311)
                      +-..|++.+   +++||+.+++..+|++.|+||.--...+..-  --.|.|...+     .+...+.|++.+..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d-----~~~a~~~L~~~f~~   80 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEED-----VDKALKALKREFGD   80 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTT-----HHHHHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHH-----HHHHHHHHHHHHHh
Confidence            456888887   7999999999999999999999654433222  1246774321     14456666666643

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.37  E-value=2.8  Score=27.86  Aligned_cols=62  Identities=15%  Similarity=0.156  Sum_probs=41.5

Q ss_pred             EEEEEEe--CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491          117 TALELTG--TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG  190 (311)
Q Consensus       117 t~i~V~~--~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  190 (311)
                      ..|.|.+  .++||+.+++..+|++.|+||..-.-.+  ...--.|.|..          ++.++-...|++.+-.
T Consensus         2 a~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~--se~~Is~vV~~----------~d~~~Av~~Lh~~f~~   65 (75)
T d2cdqa3           2 AIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA--SKVNISFIVNE----------AEAEGCVQALHKSFFE   65 (75)
T ss_dssp             EEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT--TCSEEEEEEEH----------HHHHHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCc--cceEEEEEEeH----------HHHHHHHHHHHHHHhc
Confidence            3566776  5689999999999999999998644333  22344566654          3445555566665533