Citrus Sinensis ID: 021534
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | 2.2.26 [Sep-21-2011] | |||||||
| O81025 | 463 | Putative protein PHLOEM P | no | no | 0.826 | 0.555 | 0.461 | 2e-61 | |
| P54120 | 353 | Protein AIG1 OS=Arabidops | no | no | 0.659 | 0.580 | 0.575 | 9e-59 | |
| Q9NUV9 | 329 | GTPase IMAP family member | yes | no | 0.852 | 0.805 | 0.336 | 4e-37 | |
| Q8K3K9 | 310 | GTPase IMAP family member | no | no | 0.668 | 0.670 | 0.383 | 9e-33 | |
| Q8NHV1 | 300 | GTPase IMAP family member | no | no | 0.691 | 0.716 | 0.358 | 3e-32 | |
| P70224 | 277 | GTPase IMAP family member | no | no | 0.726 | 0.815 | 0.323 | 2e-29 | |
| Q8WWP7 | 306 | GTPase IMAP family member | no | no | 0.771 | 0.784 | 0.301 | 2e-28 | |
| Q99JY3 | 219 | GTPase IMAP family member | no | no | 0.591 | 0.840 | 0.378 | 2e-27 | |
| Q8ND71 | 665 | GTPase IMAP family member | no | no | 0.639 | 0.299 | 0.373 | 2e-26 | |
| Q8K349 | 305 | GTPase IMAP family member | no | no | 0.617 | 0.629 | 0.381 | 1e-24 |
| >sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/271 (46%), Positives = 177/271 (65%), Gaps = 14/271 (5%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80
+N+VLVGRTGNGKS+T N++LG K F SK + GVT CEM R ++ G ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140
DS + +S EI+ C+ MA++GIHAVLLV S R R SKEE + ++ L+ +FG +I DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGK 200
IVVFTGGD+LE++D+TL+DY CP+ L ++L+LC R VLFDNK+KD K+ EQV +
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 201 LLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKKSYDDQLKRITEMFESKLKETTTRL 260
LL+ V +V Q GG PYT +L ++K+ D++L+ E ++ E+ R
Sbjct: 186 LLARVENVGEQTGGIPYT---------YQLHRKIKEENDERLRE-----EERVIESKNRA 231
Query: 261 EQQLAEEQAARLKAEQATQSAQTKSNDEIGK 291
E +LAE Q L ++ Q + K+ I +
Sbjct: 232 EAELAEMQQNLLMEKEKLQMEEAKNKQLIAQ 262
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 118/205 (57%), Positives = 144/205 (70%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81
N+VLVGRTGNGKSAT NSI+ K F SK SSGVT C + + G ++NVIDTPGLF
Sbjct: 44 NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLF 103
Query: 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM 141
D S EF+ KEIVKC+ +A G+HAVLLV S+R R S+EE + L+ LFG KI DY+
Sbjct: 104 DLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYL 163
Query: 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKL 201
IVVFTGGD LED+ TLEDYLG P LK +L LC R +LFDNKTKD K+T+QV +L
Sbjct: 164 IVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHEL 223
Query: 202 LSLVNSVIVQNGGQPYTDEIFAELK 226
L L++ V QN PYTDE++ +K
Sbjct: 224 LKLIDLVRKQNNNIPYTDEMYHMIK 248
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 163/285 (57%), Gaps = 20/285 (7%)
Query: 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVI 75
P N + +VLVG+TG GKSAT NSILG+K F S + +TK CE + + K ++V V+
Sbjct: 26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84
Query: 76 DTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK 135
DTPG+FD+ SKEI++CI + G HA+LLV + R+++EE A + +FG+
Sbjct: 85 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143
Query: 136 KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRT 195
+ +MI++FT D+L D + L DYL RE P+ +++++ + +R +NK A++
Sbjct: 144 RARSFMILIFTRKDDLGDTN--LHDYL-REAPEDIQDLMDIFGDRYCALNNKA-TGAEQE 199
Query: 196 EQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE---------LKEQMKKSYDDQLKRIT 246
Q +LL L+ V+ +N YT+ ++ +RAE ++E + + + RI
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRMY---QRAEEEIQKQTQAMQELHRVELEREKARIR 256
Query: 247 EMFESKLKETTTRLEQQLAEEQAARLKAEQATQSA--QTKSNDEI 289
E +E K+++ ++EQ+ ++Q + AEQ A Q ++ E+
Sbjct: 257 EEYEEKIRKLEDKVEQEKRKKQMEKKLAEQEAHYAVRQQRARTEV 301
|
May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Homo sapiens (taxid: 9606) |
| >sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+VL+G+TG GKS+T NSILG+KAF+S + +TK CE ++ ++V V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCEKGVSIWDGKELV-VVDTPGIFD 91
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142
+ KEI +C+ + G HA+LLV + ++ EE A L S+F KK +MI
Sbjct: 92 TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150
Query: 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLL 202
++ T D+LED D + +YL P+ L+E++ NR LF+NK A++ EQ +LL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKA-SGAEQEEQKRQLL 206
Query: 203 SLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKK 236
+LV S++ +NGG+ +T++++ + K+ KK
Sbjct: 207 TLVQSMVRENGGKYFTNKMYESAEGVIQKQTWKK 240
|
May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Rattus norvegicus (taxid: 10116) |
| >sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 138/223 (61%), Gaps = 8/223 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+VLVG+TG+GKSATAN+ILG++ F S+ + VTK C+ + G+ + V+DTPGLFD
Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFD 69
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142
+ + KEI +CI + G HA++LV + R+++EE + +++++FGK +M+
Sbjct: 70 TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128
Query: 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDA-AKRTEQVGKL 201
++FT +ELE ++ D++ + LK I++ C NRC F N K + A++ QV +L
Sbjct: 129 ILFTRKEELE--GQSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185
Query: 202 LSLVNSVIVQNGGQPYTDEIF--AELKRAELKEQMKKSYDDQL 242
+ L+ ++ N G ++D+I+ E + + +E ++K Y DQL
Sbjct: 186 VELIEKMVQCNEGAYFSDDIYKDTEERLKQREEVLRKIYTDQL 228
|
Homo sapiens (taxid: 9606) |
| >sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 137/241 (56%), Gaps = 15/241 (6%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
L+LVGRTG GKSAT NSILG+K F+S+ G+ VT++C + M AG V V+DTP +F
Sbjct: 6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMW-AGWQVEVVDTPDIFS 64
Query: 83 S---SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISD 139
S DP V E +C ++ G HA+LLV + RF+ ++ A+ ++ LFGK++
Sbjct: 65 SEIPRTDPGCV--ETARCFVLSAPGPHALLLVTQL-GRFTMQDSQALAAVKRLFGKQVMA 121
Query: 140 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVG 199
+VVFT ++L ++L+DY+ + L++++ C R +N+ ++R Q
Sbjct: 122 RTVVVFTRQEDLA--GDSLQDYVHCTDNRALRDLVAECGGRVCALNNRAT-GSEREAQAE 178
Query: 200 KLLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKKSYDDQLKRITEMFESKLKETTTR 259
+LL +V ++ ++GG Y++E++ ++ + DQ+ ++ E+ +++ T
Sbjct: 179 QLLGMVACLVREHGGAHYSNEVYELVQDTRCADP-----QDQVAKVAEIVAERMQRRTRL 233
Query: 260 L 260
L
Sbjct: 234 L 234
|
May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells. Mus musculus (taxid: 10090) |
| >sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 142/265 (53%), Gaps = 25/265 (9%)
Query: 2 MGGRVIDADSK--------PTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS 53
MGGR + D + S R L+LVGRTG GKSAT NSILG++ F S+ G++
Sbjct: 1 MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60
Query: 54 GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA---DPEFVSKEIVKCIGMAKDGIHAVLL 110
VT+ C V V+DTP +F S DP +E C ++ G HA+LL
Sbjct: 61 SVTRACTTGSRRWDKCH-VEVVDTPDIFSSQVSKTDPG--CEERGHCYLLSAPGPHALLL 117
Query: 111 VFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170
V + RF+ ++ A+ + +FG+ + +M++VFT ++L +L DY+ + L
Sbjct: 118 VTQL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRAL 174
Query: 171 KEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAEL 230
+E++ C R FDN+ ++ QV +LL +V +++++ G Y++E++ EL
Sbjct: 175 RELVAECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY------EL 227
Query: 231 KEQMKKS-YDDQLKRITEMFESKLK 254
+ ++ + +++L+R+ E ++++
Sbjct: 228 AQVLRWAGPEERLRRVAERVAARVQ 252
|
May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells. Homo sapiens (taxid: 9606) |
| >sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+VL+G+TG GKS+T NSILG+K F S + +TK CE +R G+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142
+ +EI + + + G HA+LLV + R++ EE A + +FGK+ +MI
Sbjct: 92 TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150
Query: 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLL 202
++ T D+LED D + +YL + PK +E++ NR LF+N+ A K EQ +LL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASGAEKE-EQKMQLL 206
Query: 203 SLVNSVIVQN 212
+LV S+ + +
Sbjct: 207 TLVQSMFLSS 216
|
Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis. Mus musculus (taxid: 10090) |
| >sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 10/209 (4%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPG-- 79
N+VLVGR+G GKSAT NSILG F S+ + VTKT + R GQ V V+DTP
Sbjct: 440 NIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTWD-GQEVVVVDTPSFN 498
Query: 80 -LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS 138
+ D DP + +E+ +C+ + G +LVF + RF++E+ A+ LE++FG +
Sbjct: 499 QMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFT 557
Query: 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQV 198
Y I++FT ++L + LED++ K L+ I + C R F+NK A+ T QV
Sbjct: 558 KYAIMLFTRKEDLGAGN--LEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQET-QV 614
Query: 199 GKLLSLVNSVIVQNG--GQPYTDEIFAEL 225
LL+ VN + ++G G P+T E ++L
Sbjct: 615 KALLTKVNDLRKESGWSGYPHTQENVSKL 643
|
Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections. Homo sapiens (taxid: 9606) |
| >sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 7/199 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
L+LVG+TG+GKSAT NSILG++AF SK + VT T + + T G+ + VIDTP +F
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142
PE +K+I C +A G HAVLLV + R++ E+ A L+ +FG I Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221
Query: 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLL 202
+VFT ++L + +LE+Y+ K L + C+ R F+NK + ++ Q+ KL+
Sbjct: 222 LVFTRKEDLAEG--SLEEYIQENNNKSLDVLDVACERRHCGFNNKAQ-GDEQEAQLKKLM 278
Query: 203 SLVNSVIVQNGGQPYTDEI 221
V ++ +N G YT E
Sbjct: 279 EEVELILWENEGHCYTMEF 297
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| 296089429 | 345 | unnamed protein product [Vitis vinifera] | 0.996 | 0.898 | 0.667 | 1e-124 | |
| 225460273 | 340 | PREDICTED: protein AIG1 [Vitis vinifera] | 0.996 | 0.911 | 0.667 | 1e-124 | |
| 255539412 | 339 | aig1, putative [Ricinus communis] gi|223 | 0.993 | 0.911 | 0.673 | 1e-122 | |
| 224146305 | 335 | predicted protein [Populus trichocarpa] | 0.996 | 0.925 | 0.635 | 1e-116 | |
| 356526433 | 350 | PREDICTED: protein AIG1-like [Glycine ma | 0.980 | 0.871 | 0.616 | 1e-110 | |
| 363814318 | 336 | uncharacterized protein LOC100807910 [Gl | 0.996 | 0.922 | 0.607 | 1e-109 | |
| 4097585 | 344 | NTGP4, partial [Nicotiana tabacum] | 0.990 | 0.895 | 0.592 | 1e-108 | |
| 449464872 | 341 | PREDICTED: protein AIG1-like [Cucumis sa | 0.996 | 0.909 | 0.630 | 1e-107 | |
| 357470421 | 340 | AIG1 [Medicago truncatula] gi|355506550| | 1.0 | 0.914 | 0.573 | 1e-101 | |
| 357470409 | 346 | AIG1 [Medicago truncatula] gi|355506544| | 0.996 | 0.895 | 0.595 | 1e-101 |
| >gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/340 (66%), Positives = 266/340 (78%), Gaps = 30/340 (8%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
MGG ID + + T+PS+G R LVLVGRTGNGKSAT NSILG+K+F S+A SSGVT TCE+
Sbjct: 6 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
QRT+L+ GQ+VNVIDTPGLFD SA+ +FV KEIVKCI +AKDG+HAVL+VFS+R RFSKE
Sbjct: 66 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125
Query: 122 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181
E AA+H L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+ L LC NR
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE------------ 229
VLFDNKTKD AK+ EQV KLLSLVNSVI+QNGGQPYTDE+F ELK+
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245
Query: 230 -----------LKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAEQAT 278
LKEQM KSY++QLKRITEM E KL+ETT +LE+QLAEEQAARLKAE+
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 305
Query: 279 QSAQTKSNDEIGKLK-------KDTAELREQPKNGWCAIL 311
Q AQ SNDEI KL+ ++T ELR++ ++G CAIL
Sbjct: 306 QRAQLASNDEIRKLRENLERAQRETEELRKRAESGKCAIL 345
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/340 (66%), Positives = 266/340 (78%), Gaps = 30/340 (8%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
MGG ID + + T+PS+G R LVLVGRTGNGKSAT NSILG+K+F S+A SSGVT TCE+
Sbjct: 1 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
QRT+L+ GQ+VNVIDTPGLFD SA+ +FV KEIVKCI +AKDG+HAVL+VFS+R RFSKE
Sbjct: 61 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120
Query: 122 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181
E AA+H L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+ L LC NR
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE------------ 229
VLFDNKTKD AK+ EQV KLLSLVNSVI+QNGGQPYTDE+F ELK+
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240
Query: 230 -----------LKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAEQAT 278
LKEQM KSY++QLKRITEM E KL+ETT +LE+QLAEEQAARLKAE+
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEMVEVKLRETTMKLERQLAEEQAARLKAEEIA 300
Query: 279 QSAQTKSNDEIGKLK-------KDTAELREQPKNGWCAIL 311
Q AQ SNDEI KL+ ++T ELR++ ++G CAIL
Sbjct: 301 QRAQLASNDEIRKLRENLERAQRETEELRKRAESGKCAIL 340
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/340 (67%), Positives = 262/340 (77%), Gaps = 31/340 (9%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
MGG ID D + TSPSNG R +VLVGRTGNGKSAT NS+LG+KAF S+A SSGVT TCE+
Sbjct: 1 MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
Q+T++ GQV+NV+DTPGLFD SA+ EFV KEIVKCI MAKDGIHAVL+VFS+R RFS+E
Sbjct: 61 QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 122 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181
E AA+ L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PL+EIL LC NR
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK-RA------------ 228
VLFDNKTKD KR EQV +LLSLVN VI +NGGQPYTDE+F ELK RA
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240
Query: 229 ----------ELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAEQAT 278
ELKEQM +SY++QLKRITEM E KL+ETT RLEQQLAEEQAARLKAE+
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMVELKLRETTNRLEQQLAEEQAARLKAEEKA 300
Query: 279 QSAQTKSNDEIGKLK-------KDTAELREQPKNGWCAIL 311
Q AQ KSNDEI +L+ K+T ELR Q ++ C IL
Sbjct: 301 QLAQMKSNDEIRQLRENLERAQKETQELRRQAES-RCNIL 339
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/335 (63%), Positives = 258/335 (77%), Gaps = 25/335 (7%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
MGG +D D + SPSNG R +VLVGRTGNGKSAT NSILG+KAF S+A SSGVT +CE+
Sbjct: 1 MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
QRT+L+ GQ++NVIDTPGLFD SA EFV +EIVKCI MAKDGIHAVL+VFS+R RFS+E
Sbjct: 61 QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 122 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181
E AA+ L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLKE+L LC+NR
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKR-------------- 227
VLF+NKTKD K EQV +LLSLVN VI QNGGQPY+DE+FAE+++
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240
Query: 228 ----------AELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAEQA 277
+EL+EQMK+ Y+DQLKR+T+M E KLKE T LE++LAEEQAARL+AE++
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMVEMKLKEATGNLERRLAEEQAARLRAEES 300
Query: 278 TQSAQTKSNDEIGKLKKDTAELREQPKN-GWCAIL 311
Q Q KSN+EI L++ + E+ +N G CAIL
Sbjct: 301 AQLEQRKSNEEIRMLRERLEKAHEELRNKGGCAIL 335
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/331 (61%), Positives = 248/331 (74%), Gaps = 26/331 (7%)
Query: 7 IDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML 66
ID D + TS SN R +VLVGRTGNGKSAT N+ILG+KAF S+A SS V+ +CE++ T L
Sbjct: 20 IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79
Query: 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAI 126
GQ+VNVIDTPGLFD SA EFV KEIVKCI +AKDGIHAV++VFS+R RF++EE A+
Sbjct: 80 NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139
Query: 127 HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 186
L++LFG KI DYMIVVFTGGDELE+NDETLEDYLGRECP+PLKEIL LC+NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199
Query: 187 KTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRA------------------ 228
KTKD KR QV +LLS VN V+ +NGG+PYTDE+F +LK+
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYS 259
Query: 229 -----ELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAEQATQSAQT 283
E K+QM+++YD+QLKRITEM ESKL+E T RLE+QLAEEQAARLKAE+ AQ
Sbjct: 260 KGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARLKAEENAMLAQM 319
Query: 284 KSNDEIGKLKKDTAELREQPK---NGWCAIL 311
+S+DEI KL++ + E+ + G CAIL
Sbjct: 320 RSDDEIRKLREHLEKAHEELRKRGGGGCAIL 350
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/336 (60%), Positives = 247/336 (73%), Gaps = 26/336 (7%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
MGG I D + TS SN R +VLVGRTGNGKSAT N+ILG+K F S+A SS V+ +CE+
Sbjct: 1 MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
Q T L GQ+VNVIDTPGLFD S EFV KEIVKCI +AKDGIHAV++VFS+R RF++E
Sbjct: 61 QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120
Query: 122 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181
E A+ L++LFG KI DYMIVVFTGGDELE+N ETLEDYLGRECP+PLKEIL LCDNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRA------------- 228
VLFDNKTKD KR QV +LLS VN+V+ +NGG+PYTDE+F +LK+
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240
Query: 229 ----------ELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAEQAT 278
+ K+QM+++YDDQLKRITE+ ESKL+E T RLEQQL EEQAARLKAE+
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEIVESKLREATMRLEQQLVEEQAARLKAEENA 300
Query: 279 QSAQTKSNDEIGKLKKDTAELREQPKN---GWCAIL 311
AQ +S+DEI KL++ + E+ + G CAIL
Sbjct: 301 MLAQMRSDDEIRKLREHLEKAHEELRKRGEGRCAIL 336
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/341 (59%), Positives = 255/341 (74%), Gaps = 33/341 (9%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
MGG I D + +NG R LVLVGRTGNGKSAT NSILG+KAF S + S+GVT TCE+
Sbjct: 6 MGGSAISDDWE--FAANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
QRT+L+ GQ+++VIDTPGLFD SA+PEF+ EIVKCI MAKDGIHAVL+V S+R RFS+E
Sbjct: 64 QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123
Query: 122 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181
E AA+ L FG KISDYM++VFTGGD+LEDN+ETLEDYLGR+CP+PLK+IL +C NR
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRA------------- 228
VLFDNK+KD K+ +Q+ +LLSLVN V+ NGG+PYTD++F ELK+
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243
Query: 229 ----------ELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAEQAT 278
ELKEQM+KSY++QL+RITE+ ESKLK+TT RLE+QLA+EQAARL+AE +
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARLEAELSA 303
Query: 279 QSAQTKSNDEIGKLK-------KDTAELREQPKN-GWCAIL 311
+ AQ KS++EI KL+ ++T ELR + + G C IL
Sbjct: 304 KEAQKKSDNEIRKLREYLERAQRETEELRGRSADRGVCNIL 344
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 215/341 (63%), Positives = 256/341 (75%), Gaps = 31/341 (9%)
Query: 2 MGGRVIDADSKP--TSPSNGE--RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTK 57
MGG I+ D + TSP+NG R +VLVGRTGNGKSAT NSILG+KAF S+A SSGVT
Sbjct: 1 MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60
Query: 58 TCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR 117
T E+Q T+L GQ ++VIDTPG+FD SA +FV KEIVKCI MAKDGIHAVL+VFS+R R
Sbjct: 61 TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120
Query: 118 FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177
FS EE AA+ L++LFG KI +YMIVVFTGGDELE+N+ETLEDYLGR CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180
Query: 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRA--------- 228
NRCVLFDNKTKD ++ QV +LLSLVN +++QNGGQPY+DE+F+ELK
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240
Query: 229 --------------ELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKA 274
ELKEQM +SYD+QLKRITEM ESKL+ETT RLEQQLAEEQAARLKA
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMVESKLRETTMRLEQQLAEEQAARLKA 300
Query: 275 EQATQSAQTKSNDEIGKLK----KDTAELREQPKNGWCAIL 311
E+ Q AQ KSNDEI +L+ + ELR++ ++ CAIL
Sbjct: 301 EENAQHAQRKSNDEIRQLREHLQRAQEELRKRGESSNCAIL 341
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357470421|ref|XP_003605495.1| AIG1 [Medicago truncatula] gi|355506550|gb|AES87692.1| AIG1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/340 (57%), Positives = 240/340 (70%), Gaps = 29/340 (8%)
Query: 1 MMGGRVIDADS-KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTC 59
M G V+ D + S N + LVLVGRTGNGKSAT NSILGKK F S+A SSG+T +C
Sbjct: 1 MGGSSVLSVDDWEFASSPNDVKTLVLVGRTGNGKSATGNSILGKKVFNSRASSSGITTSC 60
Query: 60 EMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS 119
EMQ + + GQ VNVID+PGLFD S E + KEI+KCI +AKDGIHAV++VFS+R RF+
Sbjct: 61 EMQTSEMNDGQTVNVIDSPGLFDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRTRFT 120
Query: 120 KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179
+EE A+ ++ LFG KI D+MIVVFTGGDELE+NDETL+DYLGR+CP+PLK IL LC N
Sbjct: 121 EEEENALRNVQKLFGSKIVDHMIVVFTGGDELEENDETLDDYLGRDCPEPLKAILALCGN 180
Query: 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRA----------- 228
RCVLFDNKTKD K+TEQV +LLS VN V+ QNGGQPY DE+F ELK+
Sbjct: 181 RCVLFDNKTKDEKKQTEQVQQLLSFVNMVVSQNGGQPYRDELFKELKKKGQMELEKQQRE 240
Query: 229 -------------ELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKAE 275
ELK+Q ++ Y+DQL RIT+M ESKL+E TTRLE QLA+EQAARL+AE
Sbjct: 241 ADSMKGYSIEYILELKKQREQEYNDQLTRITDMVESKLREATTRLELQLAKEQAARLEAE 300
Query: 276 QATQSAQTKSNDEIGKLKKD----TAELREQPKNGWCAIL 311
+ +AQ KS EI +L++ ELR++ CAIL
Sbjct: 301 KYANAAQMKSKYEIEELRRHLEQAHQELRKRDAETSCAIL 340
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357470409|ref|XP_003605489.1| AIG1 [Medicago truncatula] gi|355506544|gb|AES87686.1| AIG1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/346 (59%), Positives = 252/346 (72%), Gaps = 36/346 (10%)
Query: 2 MGGRVIDADSKPTSP---------SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS 52
MGG ++ D + S +N R +VLVGRTGNGKSAT NSILGKK F S+A S
Sbjct: 1 MGGSYVEDDWELASSGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASS 60
Query: 53 SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVF 112
SGVT +CEMQ L GQ+VNVIDTPGLF+ SA EF+ KEIVKCI AKDGIHA+L+V
Sbjct: 61 SGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVL 120
Query: 113 SIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172
S+R+RFS+EE A+ L++LFG KI DYMIVVFTGGDELED+++TL+DYLGRECP+ LK+
Sbjct: 121 SVRSRFSEEEENALRSLQTLFGSKIVDYMIVVFTGGDELEDDEDTLDDYLGRECPESLKQ 180
Query: 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKR----- 227
IL LC NRCVLFDNKTKD KR+ QV +LLS VN +++QNGGQPYTDE+FAELK+
Sbjct: 181 ILSLCGNRCVLFDNKTKDEKKRSGQVQQLLSFVNLIVLQNGGQPYTDELFAELKKGAMKL 240
Query: 228 ------------------AELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQA 269
+ELK+ M+++Y++QLK ITEM ESKLKE TTRLE+QLAEEQA
Sbjct: 241 HREQRKVDSLEGYSEGQISELKKHMQQTYEEQLKHITEMIESKLKEATTRLEKQLAEEQA 300
Query: 270 ARLKAEQATQSAQTKSNDEIGKLKKD----TAELREQPKNGWCAIL 311
ARL+AE + + AQ KS+DEI KL+K ELR++ G CAIL
Sbjct: 301 ARLRAEDSAKLAQKKSDDEIRKLRKHLEKAHEELRKRGDKGGCAIL 346
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| TAIR|locus:2009041 | 342 | AT1G33970 [Arabidopsis thalian | 0.961 | 0.874 | 0.477 | 1.1e-66 | |
| TAIR|locus:2203817 | 311 | AT1G33950 [Arabidopsis thalian | 0.903 | 0.903 | 0.427 | 6.1e-55 | |
| TAIR|locus:2203807 | 353 | AIG1 "AVRRPT2-INDUCED GENE 1" | 0.942 | 0.830 | 0.412 | 3.5e-52 | |
| TAIR|locus:2039528 | 463 | PP2-A3 "phloem protein 2-A3" [ | 0.864 | 0.580 | 0.419 | 1.3e-50 | |
| TAIR|locus:2203802 | 334 | AT1G33890 [Arabidopsis thalian | 0.929 | 0.865 | 0.383 | 2.8e-50 | |
| TAIR|locus:2203797 | 326 | AT1G33900 [Arabidopsis thalian | 0.993 | 0.947 | 0.373 | 4.6e-50 | |
| TAIR|locus:2203832 | 336 | AT1G33930 [Arabidopsis thalian | 0.948 | 0.877 | 0.401 | 5.2e-49 | |
| TAIR|locus:2140568 | 336 | AT4G09950 [Arabidopsis thalian | 0.897 | 0.830 | 0.410 | 1.6e-47 | |
| TAIR|locus:2140558 | 394 | AT4G09940 [Arabidopsis thalian | 0.897 | 0.708 | 0.408 | 8.8e-47 | |
| TAIR|locus:2140548 | 335 | AT4G09930 [Arabidopsis thalian | 0.945 | 0.877 | 0.388 | 1.4e-46 |
| TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 151/316 (47%), Positives = 204/316 (64%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
MGG +++ D + S SN +R LVLVGRTGNGKSAT NSILG+KAF S+A + GVT TCE
Sbjct: 6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
QR + + G ++NV+DTPGLFD S +F+ KEIV+CI +A+DGIHA+LLVFS+R R ++E
Sbjct: 66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVR-RLAEE 124
Query: 122 EGAAIHILESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRC 181
E + L++LFG KI+DYMIVVF YL CP+ LKEIL +CDNR
Sbjct: 125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRA--ELKEQMKK--- 236
VLF+NKT D K+ EQV KLLSLV SV+ QN G+PY+DE+F EL+ +L++Q K+
Sbjct: 185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQKKEVEL 244
Query: 237 --SYD----DQLKRITEM-FESKLKETTTRLEQQL---AEEQAARLKAEQATQSAQTKSN 286
Y D+ K+ +M ++ +L T +E +L A+ +L EQA + K
Sbjct: 245 LQGYSNNEIDEFKKQIDMSYDRQLSRITEMVETKLRDTAKRLEQQLGEEQAARLEAEKRA 304
Query: 287 DEIGKLKKDTAE-LRE 301
+E+ K D + LRE
Sbjct: 305 NEVQKRSSDEIKKLRE 320
|
|
| TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 124/290 (42%), Positives = 180/290 (62%)
Query: 9 ADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA 68
A K S E N+VLVGRTGNGKSAT NS++GKK F SKA +SGVT C+ + K
Sbjct: 6 AQQKGHSSKQAE-NIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKD 64
Query: 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI 128
G +NVIDTPGLFD S E++SKEIV+C+ +A+ GIHAVLLV S R R ++EE +
Sbjct: 65 GHKINVIDTPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRT 124
Query: 129 LESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKT 188
L++LFG +I DY++VVF YLGR+CP +KE++++ NR V+ DNKT
Sbjct: 125 LQALFGSQILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKT 184
Query: 189 KDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKKSYDD-QLKRITE 247
D K+ EQV KLLSLV+ + G+ YTD+ + +K E E+++K +++ + K +E
Sbjct: 185 HDEGKKAEQVHKLLSLVDDIRRSKCGEAYTDDTYHMIK--EESEKLRKHHEELESKNYSE 242
Query: 248 MFESKLKETTTRLEQ----QLAEEQAARLK-AEQATQSAQTKSNDEIGKL 292
+++K + L + Q++E+ +LK A +A + A +K E +L
Sbjct: 243 ECAAEMKNQSLILYKENLKQMSEQLEKKLKDAAEAQEKALSKMTQENNEL 292
|
|
| TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 127/308 (41%), Positives = 174/308 (56%)
Query: 10 DSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG 69
D S + N+VLVGRTGNGKSAT NSI+ K F SK SSGVT C + + G
Sbjct: 32 DEFSASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91
Query: 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHIL 129
++NVIDTPGLFD S EF+ KEIVKC+ +A G+HAVLLV S+R R S+EE + L
Sbjct: 92 PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151
Query: 130 ESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTK 189
+ LFG KI DY+IVVF YLG P LK +L LC R +LFDNKTK
Sbjct: 152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211
Query: 190 DAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK------RAELKEQMKKSYDDQ-- 241
D K+T+QV +LL L++ V QN PYTDE++ +K + E +E K + ++
Sbjct: 212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQL 271
Query: 242 ---LKRITEMFESKLKETTTRLEQ--QLAEEQAARL--KAEQATQSAQTKSNDEIGKLKK 294
+K + M E LK +E+ ++A E +L + E+A + + + + KLK+
Sbjct: 272 AALMKELQIMNERNLKAMAEMMEKNMKIAMEAQEKLFEQREKAQEMSYQQKMEMQEKLKQ 331
Query: 295 DTAELREQ 302
+R +
Sbjct: 332 MEGRMRAE 339
|
|
| TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 119/284 (41%), Positives = 168/284 (59%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80
+N+VLVGRTGNGKS+T N++LG K F SK + GVT CEM R ++ G ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140
DS + +S EI+ C+ MA++GIHAVLLV S R R SKEE + ++ L+ +FG +I DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 141 MIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGK 200
IVVF Y CP+ L ++L+LC R VLFDNK+KD K+ EQV +
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 201 LLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKKSYDDQLKRITEMFESKLKETTTRL 260
LL+ V +V Q GG PYT +L ++K+ D++L+ + ESK R
Sbjct: 186 LLARVENVGEQTGGIPYT---------YQLHRKIKEENDERLREEERVIESK-----NRA 231
Query: 261 EQQLAEEQAARLKAEQATQSAQTKSNDEIGKLKKDTAELREQPK 304
E +LAE Q L ++ Q + K+ I + + + +L EQ +
Sbjct: 232 EAELAEMQQNLLMEKEKLQMEEAKNKQLIAQAEANE-KLMEQER 274
|
|
| TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 114/297 (38%), Positives = 172/297 (57%)
Query: 11 SKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ 70
S+ S +N+VLVGRTGNGKSAT NS++GK F+S+A ++GVTKTC+ + + G
Sbjct: 4 SEQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGS 63
Query: 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILE 130
+NVIDTPGLFD S EF+SKEI+ C+ +A+ G+H V+LV S+R R ++EE + L+
Sbjct: 64 RINVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQ 123
Query: 131 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 190
LFG +I DY+IV+F Y + CP LK +L LCD+R V+F+N TKD
Sbjct: 124 VLFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKD 183
Query: 191 AAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE--LKEQMKKSYDDQL--KRIT 246
K+ EQV + L+LV V +N G+P+ +++ E+K LK+Q K L +
Sbjct: 184 KHKKVEQVQQFLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEASNLGEAELA 243
Query: 247 EMFESKLKETTTRLEQQLAEEQAARLKAEQATQSAQTKS--NDEIGKLKKDTAELRE 301
+M + E TR+ Q E+ + E + + S N+ + ++ +LR+
Sbjct: 244 KMKKELQMEHDTRMSQM--EDMVKNMLKETSAAHERMVSMLNENLENAHRENIDLRK 298
|
|
| TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 118/316 (37%), Positives = 179/316 (56%)
Query: 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM 61
M G D + S S +N+VLVGRTGNGKSAT NS++GK+ F S+ ++GVT CE
Sbjct: 1 MAGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCET 60
Query: 62 QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE 121
+ G +NVIDTPGLFD S E++S+EI+ C+ +A+DG+HAV+LV S+R R S+E
Sbjct: 61 CVAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQE 120
Query: 122 EGAAIHILESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRC 181
E A ++ L+ +FG +I DY++V+F YL + CP+ LK +L+LC R
Sbjct: 121 EEATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRR 180
Query: 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAEL-KRAE-LKEQMKKSYD 239
+LFDN+T D K+ +QV +LL+ V ++ G P+TDE+ ++ K AE L+EQ K+
Sbjct: 181 ILFDNRTTDEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEAETLREQQKEVES 240
Query: 240 DQLKRIT-EMFESKLKETTTRLEQQLAEEQAARLKAEQATQSAQT---KSNDEIGKLKKD 295
L E ++ + + +AE RL+ + Q + N EI + +
Sbjct: 241 KDLAAAEIEKWKKHYQTEHDKNMNMMAEMLGNRLREDSERQEKMLLALRDNLEISQRQNK 300
Query: 296 TAELRE-QPKNGWCAI 310
EL + +P C +
Sbjct: 301 LNELTDNEPDLIHCGV 316
|
|
| TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 124/309 (40%), Positives = 174/309 (56%)
Query: 16 PSNGE--RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVN 73
PS E +N+VLVGRTGNGKSAT NSI+G+K F SK + GVT C+ R + G ++N
Sbjct: 29 PSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGPIIN 88
Query: 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLF 133
VIDTPGLFD + EF+SKEIV C+ +A++G+HAV+LV S+ R S+EE A+ L+ LF
Sbjct: 89 VIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQMLF 148
Query: 134 GKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAK 193
G KI DY+IVVF YL CP+ LK +L+LC R V+FDN+TKD
Sbjct: 149 GGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKDEGV 208
Query: 194 RTEQVGKLLSLVNSVIVQNGGQPYTD-------EIFAELKRAELKEQMKKSYDDQ---LK 243
+ +QV +LL V ++ + GG P+TD E A +KR E + + K D++ LK
Sbjct: 209 KAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEEKNIADEEKAALK 268
Query: 244 RITEMFESKLKETTTRLEQQLAEEQAARLKAEQATQSAQTKSNDEIGK-LKKDTAELREQ 302
+ +M S+ + +++ +E AA Q IG + AE ++
Sbjct: 269 KQLDMSYSQNMNMMALMMERIFKETAAA-NERQMNMMKDFMEISIIGNDAHRKRAEEKQA 327
Query: 303 PKNGWCAIL 311
K C IL
Sbjct: 328 EKKQECNIL 336
|
|
| TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 124/302 (41%), Positives = 176/302 (58%)
Query: 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79
ER LVL+GRTGNGKSAT NSILGK F SKA +TK C++ ++ L G +NVIDTPG
Sbjct: 17 ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKLPNGLTINVIDTPG 76
Query: 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISD 139
LF +S+ +F +EIV+C+ +AK GI AVLLVFS+RNR ++EE + + L+ LFG +I D
Sbjct: 77 LFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTLRTLKILFGSQIVD 136
Query: 140 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNK-TKDAAKRTEQV 198
Y+IVVF YL +CP+ +EIL+ CD+R VLFDN +K+ QV
Sbjct: 137 YIIVVFTNEDALECGETLDD-YL-EDCPE-FQEILEECDDRKVLFDNSYNAPVSKKDRQV 193
Query: 199 GKLLSLVNSVIVQNGGQPYTDEIFAELKRAE--LKEQMK-----KSYDD-----QLKRI- 245
LL+LV + +N G+ Y ++ EL+ E +KE+ K K + Q+K+
Sbjct: 194 HDLLNLVEQISKKNNGKSYMADLSHELRENEATIKEKQKQIEEMKGWSSKQEISQMKKEL 253
Query: 246 ----TEMFESKLKETTTRLEQQLAEEQAARLKAEQATQSAQTKSNDEIGKLKKDTAE-LR 300
EM E ++ + +L++ L + + KA+ + + K N EI KL D LR
Sbjct: 254 EKSHNEMLEGIKEKISNQLKESLEDVKEQLAKAQAEREETEKKMN-EIQKLSSDEIRRLR 312
Query: 301 EQ 302
EQ
Sbjct: 313 EQ 314
|
|
| TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 123/301 (40%), Positives = 179/301 (59%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80
R L+LVGR+GNGKSAT NSILG+KAF SK +SGVT CE+Q + L GQ++NVIDTPGL
Sbjct: 48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107
Query: 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140
F S EF +EI++C + K+GI AVLLVFS++NR ++EE +A+ L+ LFG KI DY
Sbjct: 108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167
Query: 141 MIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTK-DAAKRTEQVG 199
MIVVF YL + P KEIL+ C++R VLF N++ +++ +QV
Sbjct: 168 MIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225
Query: 200 KLLSLVNSVIVQNGGQPYTDEIFAELKRAE----LKEQ----MKKSYDDQ----LKRITE 247
+LL+ V + NG + Y ++ E++ E +K+Q MK Y Q +K+ E
Sbjct: 226 ELLNYVEEIARLNG-KSYMADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMKKDME 284
Query: 248 M-FESK-LKETTTRLEQQLAEEQAA---RLKAEQATQSAQTKSNDEIGKLKKDTA-ELRE 301
FE++ L++ R+E +L E + +LK E++ + K E+ K D EL +
Sbjct: 285 KSFENQQLRQMMERVETELRETKERLEQQLKEEKSARLELEKRAKEVEKRSSDVVKELND 344
Query: 302 Q 302
+
Sbjct: 345 E 345
|
|
| TAIR|locus:2140548 AT4G09930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 125/322 (38%), Positives = 182/322 (56%)
Query: 2 MGGRVIDADSKPTS-------PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG 54
MGG +++ D + P R LVL+G +GNGKSAT NSIL +AF SK ++
Sbjct: 1 MGGGLVEVDVQTGQDACESDLPMKPSRTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAA 60
Query: 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSI 114
VTK CE++ T GQ++NVIDTPGLF E +EI+KC +AK+GI AVL+VFS+
Sbjct: 61 VTKECELKSTKRPNGQIINVIDTPGLFSLFPSNESTIREILKCSHLAKEGIDAVLMVFSL 120
Query: 115 RNRFSKEEGAAIHILESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEIL 174
R+R ++EE + +L++LFG I DY+IVVF YL E KEIL
Sbjct: 121 RSRLTEEEKSVPFVLKTLFGDSIFDYLIVVFTNEDSLIDDNVTINEYL--EGSPDFKEIL 178
Query: 175 QLCDNRCVLFDNKTKDAA-KRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE--LK 231
C+NR VLF+N+ + + K+ +QV KLL LV V +N +P+ ++ E +E +
Sbjct: 179 AACNNRMVLFENRLRTSKRKKAKQVQKLLDLVEEVERKNNNKPFLFDLSHESMESEAVVD 238
Query: 232 EQ------MKKSYDDQL------KRITEMFESKLK---ETTTRLEQQLAEEQAARLKAEQ 276
E+ MK +Y Q + + K++ ETT+ LEQ+L +EQ ARL+AE+
Sbjct: 239 EKAKKIRAMKSNYTKQEMSNWKEEEVNSPLAKKVEKVIETTSLLEQKLNQEQNARLEAEK 298
Query: 277 ATQSAQTKSNDEIGKLKKDTAE 298
+S++EI K+ K+ E
Sbjct: 299 RANKLHEESSEEI-KILKEKLE 319
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9NUV9 | GIMA4_HUMAN | No assigned EC number | 0.3368 | 0.8520 | 0.8054 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 311 | |||
| pfam04548 | 211 | pfam04548, AIG1, AIG1 family | 3e-96 | |
| cd01852 | 201 | cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | 3e-94 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 4e-10 | |
| cd01853 | 248 | cd01853, Toc34_like, Translocon at the Outer-envel | 4e-10 | |
| cd00880 | 161 | cd00880, Era_like, E | 3e-08 | |
| TIGR00993 | 763 | TIGR00993, 3a0901s04IAP86, chloroplast protein imp | 5e-06 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 1e-05 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 3e-05 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 4e-05 | |
| TIGR00991 | 313 | TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch | 9e-05 | |
| cd01850 | 275 | cd01850, CDC_Septin, CDC/Septin GTPase family | 4e-04 |
| >gnl|CDD|218141 pfam04548, AIG1, AIG1 family | Back alignment and domain information |
|---|
Score = 282 bits (725), Expect = 3e-96
Identities = 110/207 (53%), Positives = 153/207 (73%), Gaps = 5/207 (2%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80
+VLVG+TGNGKSAT NSILG+KAF SK + GVTKTC++ G+++NVIDTPGL
Sbjct: 1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWD-GRIINVIDTPGL 59
Query: 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140
FD S +F+SKEI++C+ +A+ G HAVLLV S+ RF++EE A+ L+ LFG KI DY
Sbjct: 60 FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118
Query: 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGK 200
MIVVFT D+LED+ L+DYL CP+ LKE+L+ C R VLF+NK D ++ EQV +
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175
Query: 201 LLSLVNSVIVQNGGQPYTDEIFAELKR 227
LL+LV +++ +NGG+PYT++++ ++K
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIKE 202
|
Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211 |
| >gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | Back alignment and domain information |
|---|
Score = 277 bits (710), Expect = 3e-94
Identities = 102/207 (49%), Positives = 144/207 (69%), Gaps = 6/207 (2%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80
LVLVG+TGNGKSAT N+ILG+K F SK +SGVTKTC+ + + G+ VNVIDTPGL
Sbjct: 1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59
Query: 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140
FD+S PE +SKEI++C+ ++ G HA LLV + RF++EE A+ L+ LFG+K+ D+
Sbjct: 60 FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118
Query: 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGK 200
IV+FT GD+LE +LEDYL C LK +L+ C R V F+NK K ++ +QV +
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLEDSCE-ALKRLLEKCGGRYVAFNNKAKG-REQEQQVKE 174
Query: 201 LLSLVNSVIVQNGGQPYTDEIFAELKR 227
LL+ V ++ +NGG+PYT+E++ E +
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAEE 201
|
This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-10
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 24 VLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQV-VNVIDTPGLFD 82
V+VGR G GKS+ N++LG + + G T+ ++ L G+V + ++DTPGL +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59
Query: 83 SSA-DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM 141
E +++ +++ G +LLV +R S+E+ A + IL L + I +
Sbjct: 60 FGGLGREELARLLLR-------GADLILLVVDSTDRESEED-AKLLILRRLRKEGI--PI 109
Query: 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKE 172
I+V D L + E E E K L
Sbjct: 110 ILVGNKID-LLEEREVEELLRLEELAKILGV 139
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like) | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81
++++G+TG GKS+T NSI G++ A S + E+ RT+ G +N+IDTPGL
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90
Query: 82 DSSADPEFVSKEIVKCIG--MAKDGIHAVLLV---FSIRNRFSKEEGAAIHILESLFGKK 136
+S + V+++I+ I + K I VL V R + I +S FG
Sbjct: 91 ESQD--QRVNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNL-DVPLLRAITDS-FGPS 146
Query: 137 ISDYMIVVFT 146
I IVV T
Sbjct: 147 IWRNAIVVLT 156
|
The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 13/134 (9%)
Query: 24 VLVGRTGNGKSATANSILGKKAFM-SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+ GR GKS+ N++LG+ + S G T+ + L V +IDTPGL +
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPI--PGTTRDPVRKEWELLPLGPVVLIDTPGLDE 58
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142
+E + D VLLV + + + E A L GK + +
Sbjct: 59 EGGLGRERVEEARQVA----DRADLVLLV--VDSDLTPVEEEAKLGLLRERGKPV----L 108
Query: 143 VVFTGGDELEDNDE 156
+V D + +++E
Sbjct: 109 LVLNKIDLVPESEE 122
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81
N++++G++G GKSAT NSI G+ F + A G T E++ + G + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLK 177
Query: 82 DSSAD 86
S++D
Sbjct: 178 SSASD 182
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 24 VLVGRTGNGKSATANSILGKKAFMSKAGS-SGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
LVGR GKS N++ G K + G T+ + +L G+ + ++DTPGL +
Sbjct: 3 ALVGRPNVGKSTLINALTGAKV--AIVSDYPGTTR--DPILGVLGLGRQIILVDTPGLIE 58
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142
+++ + V + + + ++ +LLV ++++ + LE L K +I
Sbjct: 59 GASEGKGV-EGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP----II 112
Query: 143 VVFT 146
+V
Sbjct: 113 LVLN 116
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQV-VNVIDTP 78
E +V+VG GKS N +LG K +++ G T+ N++DT
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVTTVIEEDGKTYKFNLLDTA 59
Query: 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILES-----LF 133
G D A + + + + D V+LV + K+ IH ES L
Sbjct: 60 GQEDYDAIRRLYYRAVESSLRVF-DI---VILVLDVEEILEKQTKEIIHHAESGVPIILV 115
Query: 134 GKKI 137
G KI
Sbjct: 116 GNKI 119
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPG 79
L +VG GKS N++LG++ +GVT T + T+L+ G + V ++DTPG
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVL-----PTGVTPTTAVI-TVLRYGLLKGVVLVDTPG 55
Query: 80 LFDSSADP--EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKI 137
L +S+ + E + + AV+ V S ++ E + + GKKI
Sbjct: 56 L-NSTIEHHTEITESFLPRA--------DAVIFVLSADQPLTESEREFLKEILKWSGKKI 106
Query: 138 SDYMIVVFTGGDELEDNDE 156
V D L + +
Sbjct: 107 ----FFVLNKIDLLSEEEL 121
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 9e-05
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
++++G+ G GKS+T NSI+G++ A S + + RT +AG +N+IDTPGL +
Sbjct: 41 ILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIE 98
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR---NRFSKEEGAAIHILESLFGKKISD 139
+++ + V I G +L++ R R +G I + FGK I
Sbjct: 99 GG----YINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWR 154
Query: 140 YMIVVFT 146
+VV T
Sbjct: 155 KSLVVLT 161
|
[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313 |
| >gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSK---AGSSGVTKTCEMQRTM--LKAGQV---VN 73
N+++VG +G GKS N++ G K + SK A +TKT E++ + L+ V +
Sbjct: 6 NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLT 65
Query: 74 VIDTPGLFDSSADPEFVSKEIVKCI 98
VIDTPG D+ + K IV I
Sbjct: 66 VIDTPGFGDNI-NNSDCWKPIVDYI 89
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 100.0 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 100.0 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.95 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.9 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.9 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.9 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.9 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.89 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.89 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.89 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.89 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.88 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.87 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.86 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.86 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.86 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.85 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.85 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.85 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.85 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.85 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.84 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.84 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.84 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.84 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.84 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.84 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.84 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.84 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.84 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.83 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.83 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.83 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.83 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.83 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.83 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.82 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.82 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.82 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.82 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.82 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.82 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.82 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.82 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.82 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.82 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.82 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.82 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.82 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.82 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.82 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.82 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.82 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.81 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.81 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.81 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.81 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.81 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.81 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.81 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.81 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.81 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.81 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.81 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.81 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.81 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.81 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.8 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.8 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.8 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.8 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.8 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.8 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.8 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.8 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.8 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 99.8 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.8 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.8 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.8 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.8 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.8 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.8 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.79 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.79 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.79 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.79 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.79 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.79 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.79 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.79 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.79 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.79 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.79 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.79 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.79 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.79 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.79 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.79 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.79 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.79 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.79 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.78 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.78 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.78 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.78 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.78 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.78 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.78 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.78 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.78 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.78 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.78 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.78 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.78 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.78 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.78 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.78 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.78 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.78 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.78 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.78 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.77 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.77 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.77 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.77 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.77 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.77 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.77 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.77 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.77 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.77 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.77 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.77 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.77 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.76 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.76 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.76 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.76 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.76 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.76 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.76 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.76 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.76 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.76 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.75 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.75 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.75 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.75 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.75 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.75 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.75 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.75 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.75 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.75 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.75 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.74 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.74 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.74 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.74 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.74 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.74 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.74 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.74 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.74 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.74 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.74 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.74 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.74 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.74 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.73 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.73 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.73 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.73 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.73 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.73 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.73 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.72 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.72 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.72 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.71 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.71 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.71 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.71 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.7 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.7 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.7 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.7 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.7 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.7 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.69 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.68 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.68 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.68 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.68 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.68 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.68 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.68 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.68 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.68 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.67 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.67 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.67 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.67 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.67 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.67 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.67 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.67 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.67 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.67 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.66 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.66 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.66 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.66 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.66 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.65 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.65 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.64 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.64 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.64 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.64 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.64 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.63 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.63 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.63 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.63 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.63 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.62 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.61 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.61 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.61 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.61 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.6 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.6 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.6 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.6 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.6 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.6 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.59 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.59 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.58 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.58 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.57 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.57 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.56 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.56 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.56 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.55 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.54 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.54 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.54 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.54 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.54 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.53 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.53 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.52 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.51 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.51 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.5 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.49 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 99.48 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.47 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.45 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.44 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.44 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.42 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.42 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.41 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.41 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.41 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.4 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.39 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.39 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.38 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.38 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.38 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.38 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.36 | |
| PRK13768 | 253 | GTPase; Provisional | 99.36 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.36 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.36 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.34 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.32 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.32 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 99.32 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.31 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.31 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.31 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.29 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.28 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.26 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.26 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.26 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.23 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.22 | |
| PTZ00099 | 176 | rab6; Provisional | 99.22 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.22 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.21 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.21 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.2 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.2 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.19 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.17 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.14 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.14 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 99.14 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.12 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.12 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.11 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.1 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 99.1 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.08 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.04 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.03 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 99.02 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.02 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.01 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.01 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.0 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.98 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.98 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.98 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.95 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.92 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.91 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.91 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.91 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.91 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.89 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.88 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.88 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.86 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.85 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 98.85 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.84 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 98.84 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.83 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.82 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.82 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.81 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.8 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.79 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 98.79 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.78 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.76 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.74 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.72 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.69 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.68 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.68 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.67 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.67 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.59 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.58 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.56 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.56 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 98.56 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.54 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.52 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.49 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.49 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.47 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.45 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 98.43 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.42 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.39 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.37 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.35 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.34 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 98.34 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 98.33 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.33 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.31 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.29 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.27 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.25 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 98.24 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.24 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.23 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.22 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 98.17 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 98.16 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 98.16 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.15 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.15 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.12 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.12 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.1 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 98.07 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.05 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.03 | |
| PF02263 | 260 | GBP: Guanylate-binding protein, N-terminal domain; | 98.03 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 98.02 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.01 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.0 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.96 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.95 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.92 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.91 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.9 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.9 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 97.87 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.85 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.85 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.85 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.83 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 97.82 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 97.81 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.77 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 97.75 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.73 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 97.73 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.73 | |
| PF05879 | 742 | RHD3: Root hair defective 3 GTP-binding protein (R | 97.7 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.67 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.67 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 97.67 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.66 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 97.66 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.6 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.6 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 97.55 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 97.54 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.53 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.49 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 97.48 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 97.47 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 97.46 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.46 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.46 | |
| KOG2203 | 772 | consensus GTP-binding protein [General function pr | 97.46 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 97.46 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.45 | |
| KOG4181 | 491 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 97.39 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.38 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.37 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.34 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.33 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 97.31 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 97.26 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.25 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.24 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.23 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.21 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.2 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.19 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.19 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 97.19 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.17 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 97.16 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.16 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.16 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.14 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 97.13 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.12 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 97.11 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.09 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.08 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.08 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.07 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 97.06 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.05 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.04 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.04 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.04 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.03 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 97.03 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.03 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 97.02 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.02 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.01 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 97.01 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 97.01 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.01 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 97.01 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 97.01 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.0 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.0 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 96.99 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 96.99 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.98 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 96.98 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.97 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 96.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 96.97 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 96.97 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 96.97 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 96.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 96.96 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 96.96 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 96.96 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.96 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 96.96 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 96.95 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 96.95 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 96.94 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 96.94 |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=243.38 Aligned_cols=202 Identities=43% Similarity=0.752 Sum_probs=172.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+|+|.+|+||||++|+|+|...+.+..+..++|..+..+...+ .++.++|||||||.|+....+++.+.+..++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888877788999999998888 999999999999999888888888999999988
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
..+++|+||||++.+ +++..+...++.+.++||+++.++++||+|.+|...+ ..+++++....+..++.++..|+.+
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 899999999999999 9999999999999999999999999999999999888 6688888854456789999999999
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
|+.|++..........++.+|++.|..++.++++.+|+.+++.+++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~ 202 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAE 202 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Confidence 9999998555556678999999999999999999999999988887
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=238.60 Aligned_cols=195 Identities=51% Similarity=0.841 Sum_probs=176.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.||+|||||+|+|+|...+.+.....++|..+..+...+ .++.+.||||||+.++....+.+...+..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988777666778999999998888 899999999999999877667778888888888
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+.+++|+||||+|++ +++..+...++.+++.||....+++++|+|++|.+.. ..+++++.. ....++.++..|+.+
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 889999999999998 4999999999999999999888899999999999987 788999886 557899999999999
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI 221 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~ 221 (311)
++.|++... ++..+.++.+|++.|.++++++++++|+.++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999987 7788999999999999999999999998764
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=193.65 Aligned_cols=181 Identities=18% Similarity=0.291 Sum_probs=145.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
-..|+++|.||+|||||+|+|+|... +..++...|+......+...++.++.++||||+..+ ...+.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 37899999999999999999999998 556666677777777766657889999999999865 4556777888888
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc-HHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET-LEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|+++||+|+++.+...+..+++.+++ ...|+++++||+|...+ .. +...... +..
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~--~~~l~~~~~~-----~~~------ 142 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK-----TKTPVILVVNKIDKVKP--KTVLLKLIAF-----LKK------ 142 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhh-----cCCCeEEEEEccccCCc--HHHHHHHHHH-----HHh------
Confidence 88999999999999998899999999999887 12499999999998877 33 2222221 111
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
.+.|....+.||.++.+++.|++.+...+++ +..+|+.+++.+..
T Consensus 143 --~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~itD~~ 187 (298)
T COG1159 143 --LLPFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQITDRP 187 (298)
T ss_pred --hCCcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhccCCh
Confidence 1233344558999999999999999999976 78889999888877
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-26 Score=175.51 Aligned_cols=156 Identities=20% Similarity=0.270 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.||+|||||+|+|+|... ...+++|+|.......+.+ .+..+.+|||||+++...... .+.+.... .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~--ee~v~~~~-l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE--EERVARDY-L 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH--HHHHHHHH-H
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc--HHHHHHHH-H
Confidence 4799999999999999999999995 4567899999999999988 889999999999988654332 22232221 1
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
....+|++++|+|++ .+..+ ..++..+.++ | .|+++++||+|.+...+..++ ...+-...+.+
T Consensus 75 ~~~~~D~ii~VvDa~-~l~r~-l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLERN-LYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHHHH-HHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CHHHH-HHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 246799999999998 55443 3444455542 3 599999999998865333332 34455556888
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLV 205 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i 205 (311)
+++ .||.++.|+++|++.|
T Consensus 138 vi~------~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIP------VSARTGEGIDELKDAI 156 (156)
T ss_dssp EEE------EBTTTTBTHHHHHHHH
T ss_pred EEE------EEeCCCcCHHHHHhhC
Confidence 887 6888889999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=180.53 Aligned_cols=161 Identities=23% Similarity=0.307 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
+.|+++|.||+|||||+|+|+|..... ....+|+|++-.+....| .+..+.+|||+|+.+ ...+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI-V~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~--~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI-VSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDD--GDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE-eecCCCCccCCccceeEE-cCceEEEEECCCCCc--CCchHHHHHHHHHHHH
Confidence 689999999999999999999988633 345789999999999999 899999999999987 3346678888888888
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
++..+|++|||+|+..+++..|..+.+.|+.. .+|+++|+||+|..... ....+| .. .|
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~e-~~~~ef------------ys-lG-- 138 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKAE-ELAYEF------------YS-LG-- 138 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchhh-hhHHHH------------Hh-cC--
Confidence 88999999999999989999999999999842 25999999999976330 111111 11 12
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
|.....+||.++.|+.+|++.+...+
T Consensus 139 ---~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 139 ---FGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ---CCCceEeehhhccCHHHHHHHHHhhc
Confidence 22222379999999999999999987
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-23 Score=177.39 Aligned_cols=177 Identities=16% Similarity=0.225 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.||+|||||+|+|+|.....+ ...+++|... ...+...++..+.+|||||+.+.. ..+...+...+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v-s~~~~TTr~~-i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT-SPKAQTTRNR-ISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec-CCCCCcccCc-EEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 689999999999999999999875221 2234455543 333433356789999999988642 22334444445566
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-c
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-R 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (311)
+..+|+++||+|++...+.. ..++..+.. . ..|+++|+||+|+... ..+.+.. ..+....+. .
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~----~~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~~~~ 140 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQN-L----KRPVVLTRNKLDNKFK--DKLLPLI--------DKYAILEDFKD 140 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHh-c----CCCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcCCCc
Confidence 78899999999998544433 445555544 2 3599999999998744 3332222 222222221 3
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
+++ +||.++.|+++|++.|.+.+++ +.+.|+.++..+..
T Consensus 141 v~~------iSA~~g~gi~~L~~~l~~~l~~-~~~~~~~~~~t~~~ 179 (270)
T TIGR00436 141 IVP------ISALTGDNTSFLAAFIEVHLPE-GPFRYPEDYVTDQP 179 (270)
T ss_pred eEE------EecCCCCCHHHHHHHHHHhCCC-CCCCCCCcccCCCC
Confidence 343 7999999999999999999865 56678877766654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=172.17 Aligned_cols=191 Identities=23% Similarity=0.312 Sum_probs=135.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+......++|+|+|.+|+|||||+|+|+|...+.+.. ..+.|.......... .+..+.||||||+.+.....+...+.
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHH
Confidence 4456678999999999999999999999988643322 233344444444455 78999999999999864333333322
Q ss_pred HHHHHHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+..++ ...++|+||||.+.+ .+++..+..+++.+++.||.+..+++|+|+|++|...+++.++++|+.+ ....++.
T Consensus 110 ik~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 110 IKRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 22222 124799999997665 4788889999999999999999999999999999886666889999986 7777888
Q ss_pred HHHhcC-----------CcEEEecCCchhhhhhHHH----------HHHHHHHHHHHHH
Q 021534 173 ILQLCD-----------NRCVLFDNKTKDAAKRTEQ----------VGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~-----------~~~~~f~~~~~~sa~~~~~----------i~~l~~~i~~~~~ 210 (311)
++..+. .++.+..|+..+.. ...| +..|+..|.++..
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~-n~~ge~vlp~g~~w~~~l~~~~~~~~~ 244 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKK-NESDEKILPDGTPWIPKLMKEITEVIS 244 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccC-CCCCCeECCCCCccHHHHHHHHHHHHh
Confidence 777542 23344455433321 1111 6778888887764
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=183.21 Aligned_cols=177 Identities=18% Similarity=0.270 Sum_probs=137.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|+||+|||||+|+|+|.+. ...+++|+|++.....+.. .+..+.++|+||.++....+ ..+.+++-.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S--~DE~Var~~- 76 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYS--EDEKVARDF- 76 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCC--chHHHHHHH-
Confidence 36799999999999999999999998 6678999999999999999 88899999999999865432 223333221
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.....+|+++.|+|++ .+..+-+.+++.+. +| .|+++++|++|..+..+-.++ ...+-+..|.
T Consensus 77 ll~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g----~p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LGv 139 (653)
T COG0370 77 LLEGKPDLIVNVVDAT-NLERNLYLTLQLLE--LG----IPMILALNMIDEAKKRGIRID----------IEKLSKLLGV 139 (653)
T ss_pred HhcCCCCEEEEEcccc-hHHHHHHHHHHHHH--cC----CCeEEEeccHhhHHhcCCccc----------HHHHHHHhCC
Confidence 2246789999999999 88888877777665 33 489999999998866434443 4566677799
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
++++ ++|.++.|++++++.+.+....+.. .+..++.++++
T Consensus 140 PVv~------tvA~~g~G~~~l~~~i~~~~~~~~~-~~~~~y~~~ie 179 (653)
T COG0370 140 PVVP------TVAKRGEGLEELKRAIIELAESKTT-PREVDYGEEIE 179 (653)
T ss_pred CEEE------EEeecCCCHHHHHHHHHHhcccccc-ccccccchHHH
Confidence 9988 8889999999999999987765443 44344444443
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=164.94 Aligned_cols=155 Identities=22% Similarity=0.314 Sum_probs=114.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc----C--CCCCcceeEEEEEEEeeCCc---eEEEEeCCCCCCCCCChHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK----A--GSSGVTKTCEMQRTMLKAGQ---VVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----~--~~~~~T~~~~~~~~~~~~~~---~l~liDTPG~~~~~~~~~~ 89 (311)
-.++|+++|++|.|||||||+|++....... . .....|..+..+...+..+. +++++|||||+|.-.. ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence 4589999999999999999999998532221 1 11235666666666553322 8999999999997433 44
Q ss_pred HHHHHHHHHH----hc--------------cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 90 VSKEIVKCIG----MA--------------KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 90 ~~~~~~~~~~----~~--------------~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
.++.+...+. .+ ..++||+||++..+ +.+++.|..+|+.|.+.+ ++|.|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeecccc
Confidence 4444443332 11 25689999999865 899999999999988764 89999999999
Q ss_pred CCCChhcHHHHhhhcCCchHHHHHHhcCCcEE-EecCC
Q 021534 151 LEDNDETLEDYLGRECPKPLKEILQLCDNRCV-LFDNK 187 (311)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~ 187 (311)
+.. ..+..+... +...+..+..++| +|++.
T Consensus 175 lT~--~El~~~K~~-----I~~~i~~~nI~vf~pyd~e 205 (373)
T COG5019 175 LTD--DELAEFKER-----IREDLEQYNIPVFDPYDPE 205 (373)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHhCCceeCCCCcc
Confidence 988 888888776 8888898888887 45544
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=179.56 Aligned_cols=165 Identities=22% Similarity=0.289 Sum_probs=124.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..-.++|+|+|.||+|||||+|+|+|...+.+....+ .|+.+......+ .+..+.||||||+.++.... .....+..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk 191 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILS 191 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHH
Confidence 3445899999999999999999999998766544333 455555555555 78899999999999975433 22333333
Q ss_pred HHHhc--cCCccEEEEEEECCC-CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh-----hcHHHHhhhcCCc
Q 021534 97 CIGMA--KDGIHAVLLVFSIRN-RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDND-----ETLEDYLGRECPK 168 (311)
Q Consensus 97 ~~~~~--~~~~d~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-----~~~~~~~~~~~~~ 168 (311)
.+..+ ..++|+||||++.+. +....+..+++.+.++||.++++++|||+|++|.+.+++ .++++|+.. +..
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~ 270 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSH 270 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChH
Confidence 33222 246899999998762 233367789999999999999999999999999996532 579999986 788
Q ss_pred hHHHHHHhcCCcEEEec
Q 021534 169 PLKEILQLCDNRCVLFD 185 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (311)
.++.++..|..++..|+
T Consensus 271 ~Lq~~Irq~~g~~~l~n 287 (763)
T TIGR00993 271 IVQQAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHHHHhcCcceecc
Confidence 89999999988666554
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-22 Score=172.73 Aligned_cols=180 Identities=19% Similarity=0.317 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|.||||||||+|+|+|..... .++...|+......+...++..+.+|||||+.+.. ..+.+.+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 689999999999999999999987632 23333333333333333255789999999998643 2333444555555
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-C
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-N 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 179 (311)
++..+|+++||+|++++++..+..++..+.. ...|+++|+||+|+.... ..+...+.. +....+ .
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~-~~l~~~~~~--------l~~~~~~~ 146 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTPVILVLNKIDLVKDK-EELLPLLEE--------LSELMDFA 146 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCCEEEEEECCcCCCCH-HHHHHHHHH--------HHhhCCCC
Confidence 6788999999999986677777777766653 125999999999987331 333332222 222212 2
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
.+++ .|+.++.|+++|++.+...+++ +.+.|+.++..+..
T Consensus 147 ~i~~------iSA~~~~gv~~L~~~L~~~l~~-~~~~y~~~~~td~~ 186 (292)
T PRK00089 147 EIVP------ISALKGDNVDELLDVIAKYLPE-GPPYYPEDQITDRP 186 (292)
T ss_pred eEEE------ecCCCCCCHHHHHHHHHHhCCC-CCCCCCCCCCCCCC
Confidence 3333 7888899999999999998865 55678777655544
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=153.52 Aligned_cols=172 Identities=20% Similarity=0.247 Sum_probs=123.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
|.+..+-|+++|.+|+|||||||+|+|...+...+..+|.|.....+.+.. .+.+||.||++....+. +..+.+.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k-~~~e~w~ 94 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPK-EVKEKWK 94 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCH-HHHHHHH
Confidence 445678999999999999999999999876556667889999888877532 38899999999887665 3333333
Q ss_pred HHHHhcc---CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAK---DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~---~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+..++ ....+++.++|+.+.+...|.+.++++... ..|+++|+||+|.+.. ......+.. +.+
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~--~~~~k~l~~-----v~~ 162 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKK--SERNKQLNK-----VAE 162 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCCh--hHHHHHHHH-----HHH
Confidence 3333332 237899999999999999999999999874 2489999999999976 333322222 222
Q ss_pred HHHh-cCCc--EEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQL-CDNR--CVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~-~~~~--~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.. .... +.. .|+..+.|+++|...|.+.+.
T Consensus 163 ~l~~~~~~~~~~~~------~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 163 ELKKPPPDDQWVVL------FSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HhcCCCCccceEEE------EecccccCHHHHHHHHHHHhh
Confidence 2211 1222 333 355567889999999987764
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=172.84 Aligned_cols=179 Identities=22% Similarity=0.275 Sum_probs=125.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.+|+|||||+|+|+|..... ....+++|.......+.+ ++.++.+|||||+.+... .+...+....
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~ 125 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCA 125 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHH
Confidence 44699999999999999999999987522 122345555555555566 788999999999865322 2333444444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++|||+|....+...+..++..+... ..|.++|+||+|+... .+.+ +...+....
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~~~---~~~~---------~~~~l~~~~ 188 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIESK---YLND---------IKAFLTENH 188 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCccc---cHHH---------HHHHHHhcC
Confidence 4557889999999998867777766677666542 2377889999997533 1221 222222222
Q ss_pred --CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 179 --NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 179 --~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
..+++ +||.++.|+++|+++|...+++ +.+.|+.++..+..
T Consensus 189 ~~~~i~~------iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~~td~~ 231 (339)
T PRK15494 189 PDSLLFP------ISALSGKNIDGLLEYITSKAKI-SPWLYAEDDITDLP 231 (339)
T ss_pred CCcEEEE------EeccCccCHHHHHHHHHHhCCC-CCCCCCCCCCCCCC
Confidence 23444 7899999999999999998876 77889988877765
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=162.88 Aligned_cols=134 Identities=26% Similarity=0.320 Sum_probs=104.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC---hHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD---PEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~---~~~~~~ 92 (311)
..+..++|+|+|.+|+|||||+|+|+|...+.+. ...+.|..+..+...+ .+..++||||||+.++... .+.+..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4556799999999999999999999998865443 3446677777777777 8889999999999986421 122333
Q ss_pred HHHHHHHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+..++. ..++|+++||..++ .+++..+..+++.+.+.+|.+...++++|+||+|...+
T Consensus 105 ~I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 3333322 23689999998776 57888889999999999999888999999999998855
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-21 Score=168.46 Aligned_cols=175 Identities=22% Similarity=0.281 Sum_probs=129.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.||+|||||+|+|+|+....+ ...+|+|.+.....+++ +++.+.+|||.|+-.-..-.+.+...-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv-~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIV-SDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEe-cCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 469999999999999999999999986433 34578999999999998 9999999999998643221111111001111
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++++|+|++.+++..|..+...+.+. .+++++|+||||+++.+....+++... +...+...+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence 2335667999999999999999999999888873 358999999999987643555555443 454444433
Q ss_pred -CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 -NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 -~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+ ..||.++.++..+++.+......
T Consensus 325 ~a~i~------~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 325 FAPIV------FISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred CCeEE------EEEecCCCChHHHHHHHHHHHHH
Confidence 2333 37999999999999999887754
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=150.69 Aligned_cols=163 Identities=23% Similarity=0.232 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH-HHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE-FVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~-~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||+|+|++.... ....++.|.......+.+ .+..+.||||||+.+...... .+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~- 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL- 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHH-
Confidence 57999999999999999999997642 222344566666666655 678999999999865322111 1111111111
Q ss_pred hccCCccEEEEEEECCCCCC---hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 100 MAKDGIHAVLLVFSIRNRFS---KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+|++|||+|++++.+ .....++..+...+. ..|+++|+||+|+... ..+.. . ..+...
T Consensus 77 --~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~--------~~~~~~ 140 (168)
T cd01897 77 --AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-I--------EEEEEL 140 (168)
T ss_pred --HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-H--------HHhhhh
Confidence 123589999999984432 222345555655432 3599999999998755 33332 1 112222
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +||.++.|++++++++.+.+
T Consensus 141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEEVLK------ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCceEE------EEecccCCHHHHHHHHHHHh
Confidence 2333444 78999999999999988754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=147.71 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=102.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.|+++|.+|+|||||+|+|++...-.. .....+.|.......+.+..+..+.+|||||..+ +......
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence 689999999999999999998542111 1112456666666666662277999999999532 2233334
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh---c
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL---C 177 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 177 (311)
++.++|++++|+|+++.........+..+.. .+. +|+++++||+|+... ......... +...+.. .
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~~ 139 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFLA 139 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCcC
Confidence 5678999999999985444444444444433 221 489999999998654 222222221 3333333 2
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+.++++ +|+.++.|++++++.+..
T Consensus 140 ~~~~~~------~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 140 DAPIFP------VSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCcEEE------EeCCCCcCHHHHHHHHhh
Confidence 334444 788889999999988754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=149.41 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc-eEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ-VVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~-~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
+|+++|.+|+|||||+|+|++... .....++.|.......+.+ .+. .+.+|||||+.+.......+...+ ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~----~~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRF----LR 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHH----HH
Confidence 589999999999999999998764 2222334455555555555 555 899999999864321111122222 22
Q ss_pred ccCCccEEEEEEECCCC-CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc-
Q 021534 101 AKDGIHAVLLVFSIRNR-FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC- 177 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (311)
.+..+|++++|+|++++ -+... ..+.+.+......-...|+++|+||+|+... ....+.. ..+....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~--------~~~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELL--------KELLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHH--------HHHHhhCC
Confidence 23467999999999844 12222 3445555554322234699999999998755 3333322 2223332
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +|++++.|+.++++++.++
T Consensus 145 ~~~~~~------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFP------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEEE------EecCCCCCHHHHHHHHHhh
Confidence 334444 6888889999999988754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=149.08 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=103.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.|....++|+++|.+|+|||||+|+|++...........++|..+..+.+ + ..+.+|||||++........ ...+
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~ 87 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKW 87 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHH
Confidence 35578899999999999999999999987532222334556666655443 2 47999999998765332211 1222
Q ss_pred HHHHHh---ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 95 VKCIGM---AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 95 ~~~~~~---~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
...+.. ....+|+++||+|++++++..+..++..+... ..|+++|+||+|+... ......... +.
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~--~~~~~~~~~-----i~ 155 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK--SELNKQLKK-----IK 155 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH--HHHHHHHHH-----HH
Confidence 222222 22356899999999878888887776666542 3589999999998754 333333332 44
Q ss_pred HHHHhcC--CcEEEecCCchhhhhhHHHH
Q 021534 172 EILQLCD--NRCVLFDNKTKDAAKRTEQV 198 (311)
Q Consensus 172 ~~~~~~~--~~~~~f~~~~~~sa~~~~~i 198 (311)
..+...+ .++++ +||.++.|+
T Consensus 156 ~~l~~~~~~~~v~~------~Sa~~g~gi 178 (179)
T TIGR03598 156 KALKKDADDPSVQL------FSSLKKTGI 178 (179)
T ss_pred HHHhhccCCCceEE------EECCCCCCC
Confidence 4454433 24555 566666554
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=163.54 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=120.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
.|+|+|.||||||||+|+|++... .....+.+|.......+.+.+++.+.|+||||+.........+...+.. .
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~ 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence 799999999999999999999875 3344567787877777777334679999999997642222223333332 3
Q ss_pred cCCccEEEEEEECCC---C-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 102 KDGIHAVLLVFSIRN---R-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 102 ~~~~d~il~v~d~~~---~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+..+|++++|+|++. . .......+++.+......-..+|+++|+||+|+... ..+.+.+. .+....
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~--------~l~~~~ 304 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAK--------AIVEAL 304 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHH--------HHHHHh
Confidence 567799999999871 1 112224455555543221123699999999998654 33333222 222322
Q ss_pred C--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 178 D--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 178 ~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
+ ..+++ +||.++.++.+|++.|.+.+++ ....|+.++..+..
T Consensus 305 ~~~~~Vi~------ISA~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~td~~ 348 (390)
T PRK12298 305 GWEGPVYL------ISAASGLGVKELCWDLMTFIEE-NPREEAEEAEAPEK 348 (390)
T ss_pred CCCCCEEE------EECCCCcCHHHHHHHHHHHhhh-CcccCCcccccCcc
Confidence 2 23444 6888899999999999999876 45667776655443
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=163.07 Aligned_cols=162 Identities=23% Similarity=0.229 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.++|+++|.||+|||||+|+|++...+. ...+++|.+.....+.+.++..+.||||||+... ......+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v--~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYA--ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceee--ccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH
Confidence 45899999999999999999999987532 3345667777777777745679999999998531 1222334444433
Q ss_pred HhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+..+|++|+|+|++++...... .+...+... +. ...|+++|+||+|+... ..+.. ... .
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~------------~~~-~ 325 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER------------LEE-G 325 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH------------HHh-C
Confidence 236788999999999866554443 233444443 21 23599999999998644 22211 001 1
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+++. +||.++.|+++|++.|.+.
T Consensus 326 ~~~~i~------iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVF------VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEE------EEccCCCCHHHHHHHHHhh
Confidence 122333 7889999999999998754
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=147.91 Aligned_cols=173 Identities=17% Similarity=0.337 Sum_probs=111.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+.+..++|+++|.+|+|||||+|+|++...........++|..+..+. .+..+.||||||+........ ....+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~ 94 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQ 94 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHH
Confidence 344668999999999999999999999753223233445665554433 246899999999875432221 122222
Q ss_pred HHHH---hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIG---MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~---~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.... .....++++++|+|++.+.+..+..++..+.. . ..|+++++||+|+... ......... +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~----~~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~ 162 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y----GIPVLIVLTKADKLKK--GERKKQLKK-----VRK 162 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c----CCcEEEEEECcccCCH--HHHHHHHHH-----HHH
Confidence 2222 22345678999999886777666556655543 2 2489999999998755 333332222 333
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+......+++ +|+.++.|++++++.|.+++.+
T Consensus 163 ~l~~~~~~~~~------~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 163 ALKFGDDEVIL------FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHhcCCceEE------EEcCCCCCHHHHHHHHHHHhcC
Confidence 33332334444 6888899999999999887743
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-20 Score=137.32 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+|+|.+|+|||||+|+|++....... ..+++|.......+.+ .+..+.|+||||+.+........ ..+...+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~- 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQ- 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHH-
Confidence 6899999999999999999997543333 3467777776666677 88899999999998753322211 223334433
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
+..+|+++||+|++++.+..+..+++.++ . .+|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~----~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELK--N----KKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHH--T----TSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHh--c----CCCEEEEEcC
Confidence 37889999999987655555667777773 2 3599999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=145.61 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|+|||||+|+|++....... ..+++|.......+.. .+..+.+|||||+.+.......+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-DIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc-CCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999997643222 2345555555555555 77789999999988653221111111111122
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc-C
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC-D 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 178 (311)
..+.++|++++|+|++++.+.....++..+.. ...|+++++||+|+.............. +...+... .
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY 149 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence 34568899999999987776655555544433 1259999999999875521222222221 22222211 1
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.++++ +|+.++.|+.++++.+..+
T Consensus 150 ~~~~~------~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 APIVF------ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CceEE------EeccCCCCHHHHHHHHHHh
Confidence 23333 7888889999999888653
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=145.00 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=108.0
Q ss_pred EEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 021534 24 VLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKD 103 (311)
Q Consensus 24 ~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (311)
+++|.+|+|||||+|+|++...... ...+++|.........+ .+..+.+|||||+.+... .+...+.......+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 5799999999999999999764222 23456676666667776 788999999999987432 233334444445567
Q ss_pred CccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-cEE
Q 021534 104 GIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-RCV 182 (311)
Q Consensus 104 ~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 182 (311)
.+|+++||+|+.++.+..+..+...++.. ..|+++|+||+|.... .... . .+...+. +++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~--~~~~-----------~-~~~~~~~~~~~ 136 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE--EDEA-----------A-EFYSLGFGEPI 136 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh--HHHH-----------H-HHHhcCCCCeE
Confidence 78999999999877766666666666542 2599999999998755 2221 0 1111222 333
Q ss_pred EecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 183 LFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 183 ~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
. +|+.++.|++++++++.+.
T Consensus 137 ~------~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 137 P------ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred E------EecccCCCHHHHHHHHHhh
Confidence 3 6788889999999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=165.31 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|+|+|...... ...+++|.......+.+ ++..+.+|||||+.+.....+.+.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-SDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec-CCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 3458999999999999999999999874322 23456777766666666 788999999999876433222222211112
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++|+|+|++++++..+..++..+.+. ..|+++|+||||+... .....+.... +...+...
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~ 316 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFL 316 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccC
Confidence 22356788999999999988888887777666542 2599999999998722 1333333222 33222222
Q ss_pred C-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 D-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+ .++++ +||.++.|+.++++.+......
T Consensus 317 ~~~~vi~------~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 317 DFAPIVF------ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCceEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 2 33443 7999999999999999887654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=164.51 Aligned_cols=174 Identities=21% Similarity=0.260 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|++|+|||||+|+|+|...... ...+++|.......+.+ .+..+.+|||||+.........+.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-SDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3569999999999999999999999875333 23456777776666666 788999999999876433222222211122
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++|+|+|++.+.+..+..++..+.+. .+|+++|+||||+... ....+.... +...+...
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~ 316 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-----GRALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFL 316 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCCCH--HHHHHHHHH-----HHHhcccc
Confidence 22346778999999999988888887777666542 2589999999998744 333332222 22222221
Q ss_pred -CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 -DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 -~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++++ +||.++.|+.++++.+.+....
T Consensus 317 ~~~~i~~------~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 317 DYAPIVF------ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred cCCCEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 233333 7889999999999999887654
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-20 Score=154.16 Aligned_cols=132 Identities=24% Similarity=0.240 Sum_probs=102.8
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
++|+-....++|+|+|.||+|||||++.|++... ...+.+.+|..+.+.+++. ++.++++|||||+.|-.. ++.+
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl--~ErN 234 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPL--EERN 234 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCCh--HHhc
Confidence 5667777889999999999999999999999986 6667788999999999988 888999999999998433 2222
Q ss_pred HHHHHHHHhccCC-ccEEEEEEECC--CCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCIGMAKDG-IHAVLLVFSIR--NRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~~~~~~~-~d~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.|....-.++.. .++|+|++|.+ ..++.++ ..++..++..|. .|+++|+||+|..+.
T Consensus 235 -~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 235 -EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred -HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 233333222322 48999999998 4566555 677778888775 499999999998865
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=156.13 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=121.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+++|.||+|||||+|+|++.+...+ +.-+|+|+++-...+.+ +|.++.|+||.|+.++. +.+.+.=..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~---d~VE~iGIe 288 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETD---DVVERIGIE 288 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEE-CCEEEEEEecCCcccCc---cHHHHHHHH
Confidence 34569999999999999999999999986433 33579999999999999 99999999999998753 333333333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
........+|.++||+|++.+++..+...+..+. ..+|+++|.||.|+... ...... .+..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~--~~~~~~----------~~~~- 349 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIELLP------KKKPIIVVLNKADLVSK--IELESE----------KLAN- 349 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc------cCCCEEEEEechhcccc--cccchh----------hccC-
Confidence 3344567889999999999767777777666111 23589999999998866 221110 0000
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+. .|++++.|++.|.+.|.+++..
T Consensus 350 -~~~~i~------iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 350 -GDAIIS------ISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred -CCceEE------EEecCccCHHHHHHHHHHHHhh
Confidence 222333 6888999999999999998855
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-19 Score=169.25 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=116.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP--EFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~--~~~~~~~~~~ 97 (311)
.++|+++|+||||||||+|+|+|... ...+++|+|.+.....+.+ ++..+.+|||||+++..... ....+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 37899999999999999999999876 3456788999888888777 78899999999998764321 1222333222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
......+|++++|+|++ .+.... .+...+.+. ..|+++++||+|..+. ..+.. +...+.+..
T Consensus 80 -~l~~~~aD~vI~VvDat-~ler~l-~l~~ql~e~-----giPvIvVlNK~Dl~~~--~~i~i--------d~~~L~~~L 141 (772)
T PRK09554 80 -YILSGDADLLINVVDAS-NLERNL-YLTLQLLEL-----GIPCIVALNMLDIAEK--QNIRI--------DIDALSARL 141 (772)
T ss_pred -HHhccCCCEEEEEecCC-cchhhH-HHHHHHHHc-----CCCEEEEEEchhhhhc--cCcHH--------HHHHHHHHh
Confidence 22345789999999998 444332 333344432 3599999999997754 22211 134444556
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.++++ .|+.++.|++++.+.+.+...
T Consensus 142 G~pVvp------iSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPVIP------LVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCEEE------EEeecCCCHHHHHHHHHHhhh
Confidence 777776 678888999999999988754
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=157.22 Aligned_cols=170 Identities=17% Similarity=0.144 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|.||||||||+|+|++... .....+++|.......+.+.++..+++|||||+.........+...+. .
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~fl----r 232 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFL----K 232 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHH----H
Confidence 5689999999999999999998764 334456778888777777745678999999999753222222333332 2
Q ss_pred ccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.+..++++|||+|+++.-+..+ ..+...+......-..+|+++|+||+|+... ....... +.......+.
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~-------~~~~~~~~~~ 303 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKR-------AALELAALGG 303 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHH-------HHHHHHhcCC
Confidence 3566799999999984333333 3344455543221124699999999998754 2222110 1122233344
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+++ +||.++.++++|+++|.+.+.+
T Consensus 304 ~i~~------iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFL------ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHHHh
Confidence 5555 7888999999999999987754
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=142.40 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|++|+|||||+|++++..... ....+++|.......+.+ .+..+.+|||||+.+...... .........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence 589999999999999999999876422 223456666666666666 678999999999987543211 111112223
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
.+..+|++++|+|++++.+..+...+.. . ...|+++|+||+|+... ... ....++.+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~~--~~~--------------~~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---P----ADKPIIVVLNKSDLLPD--SEL--------------LSLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---h----cCCCEEEEEEchhcCCc--ccc--------------ccccCCCc
Confidence 4568899999999996666655544433 1 23599999999998755 211 11222445
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
++. .|+.++.|+.+++++|...+
T Consensus 134 ~~~------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIA------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEE------EECCCCCCHHHHHHHHHHhh
Confidence 555 67788899999999987654
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=149.07 Aligned_cols=164 Identities=24% Similarity=0.262 Sum_probs=105.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++.++|+|+|++|||||||+|++++...... .....|.......+.+.+...+.+|||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 4558999999999999999999999764222 22344555555555552334899999999865321 2222333333
Q ss_pred HHhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+ ..+..+|++++|+|++++....+. .+...+...... ..|+++|+||+|+... .... .....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~~~--~~~~------------~~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLLDD--EELE------------ERLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccCCh--HHHH------------HHhhc
Confidence 2 235678999999999855444432 334455443222 3599999999998755 2222 11111
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
...+++. +|+.++.|+.+++++|...
T Consensus 178 ~~~~~~~------~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPDAVF------ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCceEE------EEcCCCCCHHHHHHHHHhh
Confidence 2334444 7888899999999988653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=152.20 Aligned_cols=155 Identities=21% Similarity=0.271 Sum_probs=113.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCCcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCCChHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMS-----KAGSSGVTKTCEMQRTMLKAG---QVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----~~~~~~~T~~~~~~~~~~~~~---~~l~liDTPG~~~~~~~~~~~~ 91 (311)
.+++.++|.+|.|||||||+|++.+.... ....+..|..+......+..+ .+++|+|||||+|.... ...+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn-s~~w 99 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN-SNCW 99 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc-cccc
Confidence 38999999999999999999998854321 111223356666666665332 28999999999997543 2222
Q ss_pred HHHHHHH----Hhc-------------cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCI----GMA-------------KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~----~~~-------------~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.+...+ ..+ ...+||+||++..+ +++.+.|..+++.+...+ ++|.|+.|+|.+.+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCCH
Confidence 2222222 111 13689999999765 789999999999888654 89999999999988
Q ss_pred ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 154 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
..+..+... +...+..+..+++.|....
T Consensus 174 --~El~~~K~~-----I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 174 --DELNQFKKR-----IRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred --HHHHHHHHH-----HHHHHHHcCcceecCCCCc
Confidence 788877776 7888888888888877664
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=142.89 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+|+|.+|+|||||+|++++..... ...+..+.......+... ....+.+|||||... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS--KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 489999999999999999999887522 112222222223333331 234788999999532 333344
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC---CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK---KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+++.+|++|+|+|++++-+... ..++..+.+...+ ....|+++|.||+|+.........+ ...+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 55788999999999985433222 3555566555442 1346999999999986331011111 222334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+.+++. +|+.++.|+.+++++|.+.+
T Consensus 139 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFE------TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence 44545554 68888999999999987643
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=143.07 Aligned_cols=164 Identities=21% Similarity=0.254 Sum_probs=105.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|+|||||+|+++|....... .....+.......+.. .+..+.+|||||+.+..... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc-CCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 478999999999999999999998653222 2223333333333333 55789999999988643221 122333444
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD- 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 178 (311)
..+..+|+++||+|++++.+..+..+...+... ..|+++|+||+|+.... ..+.+.... +....+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~ 143 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF 143 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence 557788999999999966666666666666543 24899999999987321 333333222 222211
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+++. .|+.++.+++++++.|.+.
T Consensus 144 ~~~~~------~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEIFP------ISALKGENVDELLEEIVKY 167 (168)
T ss_pred CceEE------EEeccCCChHHHHHHHHhh
Confidence 23333 5677788999999988764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-19 Score=162.85 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=116.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC- 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~- 97 (311)
..++|+++|.+|+|||||+|+|++..... ....+++|.......+.+ ++..+.||||||+........ ..+.+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~-~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~-~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV-VDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQAS-GHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccc-hHHHHHHHH
Confidence 46899999999999999999999987422 233567777776666777 788999999999854211110 01112111
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh-
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL- 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~- 176 (311)
...++..+|++++|+|++++.+..+..++..+.. ...|+++|+||||+... ......... +...+..
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh--hHHHHHHHH-----HHHhcccC
Confidence 1234678999999999998888887776666554 23599999999998754 221111111 1211111
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
...+++ .+||.++.|+++++..+.+.+....
T Consensus 355 ~~~~~~------~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 355 PWAPRV------NISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCEE------EEECCCCCCHHHHHHHHHHHHHHhc
Confidence 112333 3799999999999999998876533
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=152.03 Aligned_cols=154 Identities=23% Similarity=0.289 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCChHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLK-AG--QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~-~~--~~l~liDTPG~~~~~~~~~~~ 90 (311)
.++|+|+|.+|+|||||+|+|++......... +...|.........+. ++ ..++|||||||++... ....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhh
Confidence 48999999999999999999999876543221 1234444444333331 34 3799999999998743 2333
Q ss_pred HHHHHHHHH----------------hc--cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 91 SKEIVKCIG----------------MA--KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 91 ~~~~~~~~~----------------~~--~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
++.+..++. .. ...+|+++|+++.+ ++++..+..+++.+.. ..|+++|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence 333332111 01 13589999999987 5788888887777764 14899999999998
Q ss_pred CCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 152 EDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
.. ..+..+... +.+.+...+.+++.|...
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCCceECCCCC
Confidence 65 455555554 778888888888887664
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=140.07 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|++|+|||||+|++++..... ...++.+.+.....+.+ ++ ..+.+|||||... +...+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN--QYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 379999999999999999999987522 22344444444555555 44 3689999999432 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+..+|++++|+|++++-+... ..++..+....+. ..|+++++||+|..........+ ...+....
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~ 135 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVSTEE---------GEKKAKEL 135 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence 445778899999999985433222 3444444443332 35999999999985431111111 22333344
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. .|+.++.|+++++.+|.+.
T Consensus 136 ~~~~~~------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIE------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHh
Confidence 444444 6788889999999998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=142.74 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.|+++|.+|+|||||+|+|++... ......+.|.......+... .+..+.+|||||... +....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc--ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence 3699999999999999999998764 22233455666655555552 267899999999643 22233
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH-Hhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (311)
...+..+|++++|+|+++.........+..+.. . ..|+++|+||+|+.......+...+.. +.... ...
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 137 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-A----NVPFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEW 137 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEEceecccccHHHHHHHHHH-----hhccccccc
Confidence 344677899999999986555555556655543 2 358999999999764421222222211 00000 011
Q ss_pred C--CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 D--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+ .+++. +|+.++.|+.+++++|.++.
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 138 GGDVQIVP------TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cCcCcEEE------eecccCCCHHHHHHHHHHhh
Confidence 1 23333 68888899999999998764
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-19 Score=163.42 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=121.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|+|++.... .....+++|.......+.+ .+..+.||||||+... .+.+.+.+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA-IVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc-eecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 4899999999999999999997742 2234567888888888888 8899999999998642 344556676767777
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-c
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-R 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (311)
+..+|+++||+|+..+++..+..+...+++. .+|+++|+||+|.... ... ... +...+. .
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~--~~~-----------~~~-~~~lg~~~ 136 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE--DAV-----------AAE-FYSLGFGE 136 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc--ccc-----------HHH-HHhcCCCC
Confidence 8889999999999878888888888888763 2599999999997754 211 011 112232 3
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++. +||.++.|+.++++.+...++.
T Consensus 137 ~~~------vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 137 PIP------ISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred eEE------EeCCcCCChHHHHHHHHHhcCc
Confidence 343 7888899999999999887643
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=141.06 Aligned_cols=155 Identities=17% Similarity=0.107 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++....+......+.+ ........ ++ ..+.+|||||... +...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAKF-EGKTILVDFWDTAGQER-----------FQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE--EEEEEEEE-CCEEEEEEEEeCCCchh-----------hhhhh
Confidence 479999999999999999998766422111111111 11222233 33 3688999999442 33444
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++|+|+|++++.+..+ ..++..+.+... ..|+++|+||+|+... .... ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~~~----~~~~--------~~~~~~~~ 131 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLDPS----VTQK--------KFNFAEKH 131 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCchh----HHHH--------HHHHHHHc
Confidence 556788999999999985544333 345566655432 3599999999997422 1111 12223333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.+++. +|+.++.|++++++.+.+.+.
T Consensus 132 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 132 NLPLYY------VSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 444444 688899999999999887653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=164.25 Aligned_cols=164 Identities=20% Similarity=0.211 Sum_probs=119.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++..... ....+++|.......+.+ .+..+.||||||+... ...+...+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~-v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV-VEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc-ccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence 345799999999999999999999976422 234567888888888888 8889999999998631 22344556666
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+..++..+|++|||+|++++.+..+..+...+.. ...|+++|+||+|+.... .... .... .
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-----~~~piilV~NK~Dl~~~~-~~~~------------~~~~-~ 171 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRR-----SGKPVILAANKVDDERGE-ADAA------------ALWS-L 171 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCccc-hhhH------------HHHh-c
Confidence 6667788999999999997777777777777764 235999999999975431 1111 1111 1
Q ss_pred CC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+. .++ .+||.++.|+.+|++.|...+++
T Consensus 172 g~~~~~------~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 172 GLGEPH------PVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCeE------EEEcCCCCCcHHHHHHHHhhccc
Confidence 21 122 37899999999999999877644
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-19 Score=144.07 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.|+++|.+|+|||||++++..... .. ...+..+.......+.+ ++ ..+.||||||.. .+...+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f-~~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe-----------~~~~l~ 66 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF-CE-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQE-----------RFNSIT 66 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCch-----------hhHHHH
Confidence 3689999999999999999987654 22 11222333443444555 44 478999999943 355556
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++|+|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.... ...+....
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~ 135 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETD--REISRQQ-------GEKFAQQI 135 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccc--cccCHHH-------HHHHHHhc
Confidence 667889999999999985544433 3455556554433 2589999999997643 2221111 12233332
Q ss_pred -CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 -DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 -~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..++. +||.++.|+.+++.++...+..
T Consensus 136 ~~~~~~e------tSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 136 TGMRFCE------ASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 333443 7899999999999998876543
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-19 Score=139.88 Aligned_cols=158 Identities=14% Similarity=0.103 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++..... ...+..+.......+.. ++ ..+.+|||||... +....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 689999999999999999999876421 11122222222223333 33 4789999999432 33344
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++++|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.. .....+....
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE--RVVSS-------ERGRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc--cccCH-------HHHHHHHHHc
Confidence 556889999999999984432222 3444455443322 3589999999998654 21110 0123334444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +|+.++.|+.++++.+...+
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 137 GFEFFE------ASAKENINVKQVFERLVDII 162 (165)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 444544 68888999999999988765
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-19 Score=140.24 Aligned_cols=159 Identities=18% Similarity=0.103 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|++|+|||||+|++++...... ..+..+.......+.+ .+ ..+.+|||||... +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHH
Confidence 48999999999999999999998764221 1222222333334444 44 3789999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++-+-.. ..++..+..... ...|+++|.||+|+.+......+ ....+...
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKE---------EGEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHH---------HHHHHHHH
Confidence 4455788999999999985433322 344444544332 23599999999998754111111 12334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +|+.++.|+.+++..+.+.+
T Consensus 138 ~~~~~~~------~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 138 YGIKFLE------TSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4555554 78888899999999988765
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-19 Score=140.32 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++........ +..+.......+.. .+ ..+.||||||.. .+...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~ 69 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITI-DGKQIKLQIWDTAGQE-----------SFRSI 69 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHHH
Confidence 3799999999999999999999876422222 22222222233333 33 378999999932 23333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++-+-.+ ..++..++.... ...|+++|.||+|+......... ....+...
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~~~---------~~~~~~~~ 138 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVSYE---------EGEAFAKE 138 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHH---------HHHHHHHH
Confidence 4455778999999999984333222 334444444332 23589999999998743111111 12334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +|+..+.|+.+++..+.+.+
T Consensus 139 ~~~~~~e------~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 139 HGLIFME------TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4555544 78888899999998887665
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=145.22 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=105.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~ 87 (311)
+|+|+|.+|+|||||+|+|++......... ..+.|.......+.+ .+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH-----
Confidence 589999999999999999998764322110 123444544555555 677899999999754
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCC
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP 167 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~ 167 (311)
+...+..++..+|++++|+|++++........+..+.. ...|+++|+||+|.... ..+......
T Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch--hcHHHHHHH---
Confidence 22223334567899999999987666666666655554 23599999999998864 333322222
Q ss_pred chHHHHHHhcCCc--------EEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDNR--------CVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 168 ~~~~~~~~~~~~~--------~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+...+...+.. .....+....|+..+.|+.+++.++...++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 23333322210 000111233788889999999999987653
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=139.75 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++.+.... . ..++..........+.. ++ ..+.||||||.. .+....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~-----------~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-A-DCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQE-----------RFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCcccceeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHHHH
Confidence 78999999999999999999987642 1 11111112222223333 33 368999999942 244444
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++|+|+|++++-+-.. ..++..+.....+ ..|+++|.||+|+... ..+.. .....+....
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 137 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLEAQ--RDVTY-------EEAKQFADEN 137 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCcCH-------HHHHHHHHHc
Confidence 556788999999999985433322 3444444443322 3589999999998654 22110 0123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +||.++.|+.+++..+...+
T Consensus 138 ~~~~~e------~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 138 GLLFLE------CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 555554 78889999999998877544
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=138.08 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=102.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++.... ....+..+.......+.. ++ ..+.+|||||.. .+...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~-----------~~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN--LDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQE-----------RYRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHHH
Confidence 379999999999999999999987742 222233333344444444 44 368899999943 23333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++.++++|+|+|++++.+..+ ..++..+...... ..|+++|.||+|+........++ ...+...
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTEE---------AKAFAEK 137 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 4455778999999999984443333 3445555554322 25999999999976431111111 2233333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +|+.++.|+.++++.+...+
T Consensus 138 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 138 NGLSFIE------TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cCCEEEE------EECCCCCCHHHHHHHHHHHh
Confidence 3444554 78888999999999987643
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=147.33 Aligned_cols=161 Identities=21% Similarity=0.320 Sum_probs=114.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCCcceeEEEEEEE--eeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK----------------AGSSGVTKTCEMQRTM--LKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----------------~~~~~~T~~~~~~~~~--~~~~~~l~liDTPG~ 80 (311)
+.++|+++|+.++|||||+++|++....... ....+.|.......+. . .+..++++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 4589999999999999999999865421110 0113566777777776 6 8899999999996
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.+ +..........+|++|+|+|+..++.......+..+.... .|+++++||+|.. . ..+.+
T Consensus 81 ~~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~-~--~~~~~ 141 (188)
T PF00009_consen 81 ED-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG-----IPIIVVLNKMDLI-E--KELEE 141 (188)
T ss_dssp HH-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT------SEEEEEETCTSS-H--HHHHH
T ss_pred cc-----------eeecccceecccccceeeeecccccccccccccccccccc-----cceEEeeeeccch-h--hhHHH
Confidence 43 3333444467889999999998888888888888776532 4899999999988 2 44444
Q ss_pred HhhhcCCchHH-HHHHhcCC------cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLK-EILQLCDN------RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 161 ~~~~~~~~~~~-~~~~~~~~------~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+ +. .++...+. ++++ .|+.++.|+..|++.|.+.+|
T Consensus 142 ~~~~-----~~~~l~~~~~~~~~~~~~vi~------~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 142 IIEE-----IKEKLLKEYGENGEEIVPVIP------ISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHH-----HHHHHHHHTTSTTTSTEEEEE------EBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHH-----HHHHhccccccCccccceEEE------EecCCCCCHHHHHHHHHHhCc
Confidence 4443 33 34333321 3444 788899999999999988764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=140.28 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|..|+|||||++++.+... .... .+..+.......+.. ++ ..+.||||||... +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 348999999999999999999987543 2111 122333333334444 44 4788999999432 444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++.++|++|+|+|++++.+-.. ..++..+..... ..|++||.||.|+... ..+.. .....+..
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~--~~v~~-------~~~~~~a~ 138 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFK--RQVAT-------EQAQAYAE 138 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhc--cCCCH-------HHHHHHHH
Confidence 45556789999999999985554444 456666665442 3599999999997643 11111 11344555
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
..+..++. +||.++.|++++++.+.+.+....+
T Consensus 139 ~~~~~~~e------~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 139 RNGMTFFE------VSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred HcCCEEEE------ecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 55655555 7999999999999999976654443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=138.73 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++..... ...++.+.......+.. .+ ..+.+|||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 799999999999999999999876422 22233333344444444 44 3689999999432 33333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++.+|++|+|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.. .....+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDK--RVVDY-------SEAQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccc--cCCCH-------HHHHHHHHHc
Confidence 445778999999999984332222 3344445444322 3589999999997644 22110 0123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +|+.++.|+.+++..|.+.+
T Consensus 138 ~~~~~~------~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFLE------TSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCeEEE------EECCCCcCHHHHHHHHHHHH
Confidence 555555 78888899999999987755
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=140.71 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|++++...... ..+.............. ....+.+|||||.... ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK-NICTLQITDTTGSHQF-----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC-EEEEEEEEECCCCCcc-----------hHHHHH
Confidence 6899999999999999999998764221 11111111111112212 2347889999997642 122233
Q ss_pred ccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++..+|++|+|+|++++-+... ..++..+.+..+.. ...|+++|.||+|+... ..+.... ...+....+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHHhC
Confidence 4667899999999985544333 44556666655432 34599999999998653 2221110 122223334
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..++. +||.++.|+++++++|.++
T Consensus 140 ~~~~e------~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFME------TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEEE------eecCCCCCHHHHHHHHHhc
Confidence 44444 7889999999999998764
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=137.65 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||++++++... .....+..+.......+.+ .+ ..+.+|||||.. .+....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQE-----------RFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHHH
Confidence 4899999999999999999998765 2222233333333444444 44 378899999943 233334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..++..+...... ..|+++|.||+|.........+ . ...+...+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~~~~~-~--------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQRQVSRE-E--------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccccCCCHH-H--------HHHHHHHc
Confidence 445778999999999985433333 2344444443322 3599999999997653101111 1 23334445
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..++. .|+.++.|++++++.|.+.+.
T Consensus 136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFFE------TSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 555555 677788999999999987653
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=138.41 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||++++.+...... ..+..+.......+.+ ++ ..+.||||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHH
Confidence 48999999999999999999987654211 1122223334444555 44 378999999932 23334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....+..+|++++|+|++++-+... ..++..+..... ...|+++|.||+|+......... ....+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFE---------EACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 4455778999999999985433222 355555554332 23589999999998654111111 12333343
Q ss_pred cCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+. .++. +|+.++.|+.+++..+.+
T Consensus 138 ~~~~~~~e------~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGMLAVLE------TSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCcEEEE------EECCCCCCHHHHHHHHHH
Confidence 333 2333 788889999999998865
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=145.73 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++... .....+..+.......+.+.+ ...+.||||||.. .....+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHHH
Confidence 4799999999999999999998764 212222222333333444422 2478999999942 233344
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
..++..+|++|+|+|++++-+-.. ..++..+.+.... ....|+++|.||+|+... ..+... ....+...
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~-------~~~~~~~~ 138 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDD-------KHARFAQA 138 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHH-------HHHHHHHH
Confidence 455788999999999985433332 3456666665533 223479999999998643 211110 12334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +||.++.|++++++.|...+..
T Consensus 139 ~~~~~~~------iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESCL------VSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 4544444 6889999999999999877643
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-18 Score=156.33 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=109.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.||+|||||+|+|++...... ...+++|.......+.+ ++..+.+|||||+.++. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIV-TDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 448999999999999999999999764222 23467777777777777 88899999999987532 11111111112
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++++|+|++++.+..+..++.. . ...|+++|+||+|+... .... ...+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~---~~~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----L---KDKPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----c---CCCCcEEEEEhhhcccc--chhh---------------hccC
Confidence 234677899999999986666555443332 1 23599999999998654 1111 1112
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +|+.++.|+++|+++|.+.+..
T Consensus 345 ~~~i~------iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIR------ISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEE------EEeeCCCCHHHHHHHHHHHHhh
Confidence 33443 6888899999999999988754
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-19 Score=153.86 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|.||||||||+|+|++... .....+.+|.......+.+.++..+.||||||+.........+...+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr---- 231 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK---- 231 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH----
Confidence 5789999999999999999998764 3334456677777777777333899999999987532221222333322
Q ss_pred ccCCccEEEEEEECCCC---CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 101 AKDGIHAVLLVFSIRNR---FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
.+..++++|||+|+++. -...+ ..+.+.+..+...-..+|+++|+||+|+... ....+.. ..+...
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~--------~~l~~~ 301 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELL--------KELKKA 301 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHH--------HHHHHH
Confidence 24567999999999832 11122 2334444443221134699999999998755 3333222 222233
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..+++ +||.++.++++++++|.+.+
T Consensus 302 ~~~~vi~------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFP------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEE------EEccCCcCHHHHHHHHHHHh
Confidence 3444554 78889999999999998764
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=152.44 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCChHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLK-AG--QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~-~~--~~l~liDTPG~~~~~~~~~~~ 90 (311)
.++|+|+|.+|+|||||||+|++......... ....+..+......+. ++ .+++|||||||+|.. .....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence 48999999999999999999999876544210 1123334444444442 22 289999999999863 33333
Q ss_pred HHHHHHHHHh-----------------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 91 SKEIVKCIGM-----------------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 91 ~~~~~~~~~~-----------------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+..+..++.. ....+|++||+++.+ +++++.|...|+.|.+.+ |+|.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~v------NvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRV------NVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS------EEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccc------cEEeEEecccccC
Confidence 3334333321 114589999999986 789999999888887653 8999999999998
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
. ..+..+... +...+...+.+++.|...
T Consensus 157 ~--~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 157 P--EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp H--HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred H--HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 7 788877776 788888888888776654
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=138.54 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|++|+|||||+|++++...........+. ......+.+. .+..+.||||||.. .+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~v~~~~~~~~~~i~D~~G~~-----------~~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGA--AFLTQTVNLDDTTVKFEIWDTAGQE-----------RYRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEeCCchH-----------HHHHHHH
Confidence 78999999999999999999988753211111221 1222233331 23478899999932 2333344
Q ss_pred hccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++.++|++++|+|+++.-+-. ...++..+..... ...|++++.||+|..........+ ...+....+
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 137 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEE---------AQEYADENG 137 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHH---------HHHHHHHcC
Confidence 4577899999999997332222 2455555655443 235899999999976431112211 233444445
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++. .|+.++.|+.++++.+.+.+
T Consensus 138 ~~~~~------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 138 LLFFE------TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHh
Confidence 44444 78888899999999987654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=140.70 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++.... .....+..+.......+.+ ++ ..+.||||||.. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 47999999999999999999887642 1111122222222222333 33 378899999932 233334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++|+|+|++++-+... ..++..+.+.... ..|+++|+||+|+......... ....+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGERVVKRE---------DGERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhccccCHH---------HHHHHHHHc
Confidence 445778999999999985433322 4455566655432 3599999999998643101111 123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
+.+++. +|+.++.|+.+++..|.+.+...
T Consensus 137 ~~~~~e------~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 137 GVPFME------TSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 555554 78889999999999999877653
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=143.63 Aligned_cols=169 Identities=22% Similarity=0.232 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|+|+|... .. ...+++|.... .+.+ . .+.+|||||+++.........+.+...
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~-~~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RV-GKRPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-cc-CCCCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3458999999999999999999998763 22 22345555433 2333 2 689999999876544333333334433
Q ss_pred H----HhccCCccEEEEEEECCCCC-----------ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 98 I----GMAKDGIHAVLLVFSIRNRF-----------SKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 98 ~----~~~~~~~d~il~v~d~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+ ......++++++|+|.+... ...+..++..+.. ...|+++|+||+|+... . .+..
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~--~--~~~~ 150 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKN--R--DEVL 150 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCc--H--HHHH
Confidence 2 22345678999999986211 1122333444432 13599999999997654 2 1111
Q ss_pred hhcCCchHHHHHHhcCC--cEEEe-cCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQLCDN--RCVLF-DNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~~--~~~~f-~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+....+. .+..+ .....+||.++ |+++++++|.+.+.+
T Consensus 151 --------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 --------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred --------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 111122221 10000 01123799999 999999999887644
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=139.29 Aligned_cols=156 Identities=20% Similarity=0.260 Sum_probs=102.5
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDG 104 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (311)
|+|.+|+|||||+|++++.... ....+++|.......+.+ ++..+.+|||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK--VGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc--ccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5899999999999999998642 223456777777777777 678999999999876543221 11222222111 68
Q ss_pred ccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 105 IHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 105 ~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
+|++++|+|+++ .. ....++..+.. ...|+++|+||+|+... ..+... ...+....+.+++.
T Consensus 75 ~d~vi~v~d~~~-~~-~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~~~~~- 136 (158)
T cd01879 75 PDLIVNVVDATN-LE-RNLYLTLQLLE-----LGLPVVVALNMIDEAEK--RGIKID--------LDKLSELLGVPVVP- 136 (158)
T ss_pred CcEEEEEeeCCc-ch-hHHHHHHHHHH-----cCCCEEEEEehhhhccc--ccchhh--------HHHHHHhhCCCeEE-
Confidence 999999999984 22 22233333333 13599999999998755 222211 22233333555555
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+|+.++.|+.++++.+..+.
T Consensus 137 -----iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 137 -----TSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -----EEccCCCCHHHHHHHHHHHh
Confidence 78888899999999987753
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=138.35 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|++|+|||||+++|++...... ..+..+.......+.. ++ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKED--SQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQER-----------FRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeEEEEEEEE-CCEEEEEEEEECcchHH-----------HHHhH
Confidence 4899999999999999999998764221 2222233333333333 33 3788999999532 33333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++.+|++++|+|++++.+... ..++..+.....+ ..|+++++||+|.... ..+. ......+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~--~~~~-------~~~~~~~~~~~ 135 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQ--REVT-------FLEASRFAQEN 135 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchh--ccCC-------HHHHHHHHHHc
Confidence 445678999999999985443333 3444545444433 3599999999997643 1111 01123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+..++. +|+.++.|+.++++.+.+
T Consensus 136 ~~~~~~------~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 136 GLLFLE------TSALTGENVEEAFLKCAR 159 (161)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHH
Confidence 545544 688888999999998864
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=157.54 Aligned_cols=167 Identities=16% Similarity=0.098 Sum_probs=110.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.++|+++|.||||||||+|+|++...+ ....+++|.+.....+.+.+...+.||||||+... ....+.+.+...+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl 271 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL 271 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH
Confidence 3478999999999999999999998764 23445677777777777734448999999998542 1233344454443
Q ss_pred HhccCCccEEEEEEECCCCCChhHHH-HHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+..+|++|+|+|++++....... +...+..+.. ...|+++|+||+|+... ... ... . ...
T Consensus 272 -~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~--~~~--~~~--------~--~~~ 334 (426)
T PRK11058 272 -QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDD--FEP--RID--------R--DEE 334 (426)
T ss_pred -HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCc--hhH--HHH--------H--Hhc
Confidence 3467899999999998665444432 3344444322 23599999999998643 110 001 0 011
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+.+++ ..+||.++.|+++|+++|.+.+..
T Consensus 335 ~~~~~-----v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 335 NKPIR-----VWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCce-----EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 22211 226889999999999999987743
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=154.74 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=110.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
.|+|+|.||||||||||+|++... .....+.+|.......+.+.++..++|+||||+.........+...+. ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fL----rh 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFL----RH 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHH----HH
Confidence 899999999999999999998774 334456778888777777733789999999999752211122222222 22
Q ss_pred cCCccEEEEEEECCCC---CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 102 KDGIHAVLLVFSIRNR---FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+..++++|+|+|+++. -...+ ..+...|..+...-..+|+++|+||+|+... ... +..+....
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~------------l~~l~~~l 300 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EEN------------LEEFKEKL 300 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHH------------HHHHHHHh
Confidence 4567999999999732 11122 3445555554322235799999999996322 111 12222333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
+..+++ +||.++.|+++|+++|.+.+...
T Consensus 301 ~~~i~~------iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 GPKVFP------ISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcEEE------EeCCCCCCHHHHHHHHHHHHHhC
Confidence 334444 68888999999999999888653
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-18 Score=139.81 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|.+|+|||||++++++... +.. ..+..+..+....+.+ ++ ..+.||||||..+..... ..+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~-~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEE-YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTA---GQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Ccc-cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccc---hhHHHHHH
Confidence 4799999999999999999998764 221 2222222222233444 55 367899999986532211 11122223
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC-CCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH-
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ- 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (311)
..++..+|++|+|+|++++-+-.. ..+...+..... .....|+++|.||+|+... ...... .+..+..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence 344678999999999985433332 334444444331 1233599999999998643 211110 1222222
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
..+..++. +||.++.|++++++.+...+-.++
T Consensus 146 ~~~~~~~e------~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 146 SWKCGYLE------CSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred hcCCcEEE------ecCCCCCCHHHHHHHHHHHhhccC
Confidence 22444554 789999999999999887664433
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=160.48 Aligned_cols=157 Identities=21% Similarity=0.253 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ .+..+.||||||+.+.. ..+...+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5899999999999999999999874222 33567888888888888 88999999999998622 2244555555566
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|++|||+|++++++..+..+..++++. ..|+++|+||+|..... ....+ . ...+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~~-~~~~~------------~-~~lg~~ 137 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDEE-ADAYE------------F-YSLGLG 137 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccch-hhHHH------------H-HhcCCC
Confidence 67889999999999878888887777777763 35999999999964320 11111 1 11222
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++ .+|+.++.|+.++++.|..
T Consensus 138 ~~~------~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPY------PISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCE------EEEeeCCCCHHHHHHHHHh
Confidence 123 3678888999999988876
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-19 Score=141.35 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+++|++|+|||||+|++++... .. ...|.......+.+ ++..+.+|||||... +
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~--~~---~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~ 71 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI--DT---ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------L 71 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC--CC---cCCccccceEEEEE-CCEEEEEEECCCCHH-----------H
Confidence 3445668999999999999999999998743 11 12233333444555 677899999999542 3
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++.++|+++||+|++++-+... ...+..+.... .....|+++|+||+|+... ...++ +...
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~~ 139 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPGA--LSEEE---------IREA 139 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccccC--CCHHH---------HHHH
Confidence 3344556788999999999984422222 12222221110 1123599999999998654 22221 1222
Q ss_pred HHh-----cCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 174 LQL-----CDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 174 ~~~-----~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+.. .+.+++ .+||.++.|++++++++.
T Consensus 140 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 140 LELDKISSHHWRIQ------PCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred hCccccCCCceEEE------eccCCCCcCHHHHHHHHh
Confidence 211 112233 378899999999999874
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=144.18 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc---cc--ccCCCCCcceeEEEEEEEee-------------CCceEEEEeCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA---FM--SKAGSSGVTKTCEMQRTMLK-------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~---~~--~~~~~~~~T~~~~~~~~~~~-------------~~~~l~liDTPG~~~ 82 (311)
++|+++|++|+|||||+++|++... +. ......+.|.......+.+. .+..+.+|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 4799999999999999999997311 10 01112355666665555551 166899999999632
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+..........+|++++|+|+++..+..+...+... ...+ .|+++++||+|.... .......
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILC----KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcC----CCEEEEEECcccCCH--HHHHHHH
Confidence 222223335567999999999866655554444433 2233 489999999998754 3222222
Q ss_pred hhcCCchHHHHHHh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 163 ~~~~~~~~~~~~~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. ....+...+.. .+.++++ +|+.++.|+.+|++.+...++
T Consensus 143 ~~-~~~~l~~~~~~~~~~~~~vi~------iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFKNSPIIP------VSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcCCCCEEE------EeccCCCCHHHHHHHHHhccc
Confidence 22 00112222221 1234444 788999999999999987654
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=141.90 Aligned_cols=163 Identities=10% Similarity=0.036 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++.... . ...+..........+.+. ....+.||||||... +...+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-Q-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhhH
Confidence 48999999999999999999987542 1 111222222323334441 133789999999532 33344
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC--CCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++|++|+|+|++++.+-.. ..++..+..... .....|+++|+||+|+........+ .+..+..
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~---------~~~~~~~ 138 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE---------QMDQFCK 138 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH---------HHHHHHH
Confidence 556789999999999985433332 234444443321 1234599999999998632101111 1344445
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+ ..++. +|+.++.|+.+++++|.+.+..
T Consensus 139 ~~~~~~~~e------~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 139 ENGFIGWFE------TSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444 34444 7888899999999999877643
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=137.23 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=102.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------CCceEEEEeCCCCCCCCCCh
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------AGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------~~~~l~liDTPG~~~~~~~~ 87 (311)
..++|+++|.+|+|||||++++.+.... ....+..+.......+.+. ....+.||||||.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------- 73 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN--PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------- 73 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh-------
Confidence 3489999999999999999999987642 1111222222222223221 1247889999992
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
+.+......++.++|++++|+|++++-+-.+ ..++..+..... ....|+++|.||+|+... ..+..
T Consensus 74 ----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~v~~------ 140 (180)
T cd04127 74 ----ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ--RQVSE------ 140 (180)
T ss_pred ----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc--CccCH------
Confidence 3344555566889999999999984433333 334444444321 123589999999998653 11110
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.....+....+.+++. +|+.++.|++++++.+.+.+
T Consensus 141 -~~~~~~~~~~~~~~~e------~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 141 -EQAKALADKYGIPYFE------TSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -HHHHHHHHHcCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 1133444444555554 78889999999999998755
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=141.30 Aligned_cols=161 Identities=15% Similarity=0.166 Sum_probs=102.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||++++++.... ....+..+.......+.+ .+ ..+.||||||... +..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHH
Confidence 3589999999999999999999987641 111122222233333444 33 3688999999432 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++-+-.. ..++..+....+ ..|+++|+||+|+... ..+... ....+..
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~--~~~~~~-------~~~~~~~ 138 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER--KVVETE-------DAYKFAG 138 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cccCHH-------HHHHHHH
Confidence 34555788999999999985433222 344555554332 3589999999998654 222111 1233334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|+.+++++|...+..
T Consensus 139 ~~~~~~~e------~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 139 QMGISLFE------TSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred HcCCEEEE------EECCCCcCHHHHHHHHHHHHHH
Confidence 44545554 7888899999999999876543
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=157.02 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=111.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
...|+|+|.||||||||||+|++... .....+++|.......+.+ .+..++|+||||+.........+...+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fL---- 231 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFL---- 231 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHH----
Confidence 35799999999999999999999764 3344567788887777777 7789999999998753222222222222
Q ss_pred hccCCccEEEEEEECCCC----CChhHH-HHHHHHHHHhC---------CCccCeEEEEEeccCCCCCChhcHHHHhhhc
Q 021534 100 MAKDGIHAVLLVFSIRNR----FSKEEG-AAIHILESLFG---------KKISDYMIVVFTGGDELEDNDETLEDYLGRE 165 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~----~~~~~~-~~l~~l~~~~~---------~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 165 (311)
..+..+|++|+|+|+++. -...+. .+...|..+.. .-..+|+++|+||+|+... ..+.+.+
T Consensus 232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l--- 306 (500)
T PRK12296 232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV--- 306 (500)
T ss_pred HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH---
Confidence 234667999999999721 111122 22233443321 1124699999999997644 3332222
Q ss_pred CCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 166 CPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+...+.++++ +|+.++.|+++|+.+|.+++...
T Consensus 307 -----~~~l~~~g~~Vf~------ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 307 -----RPELEARGWPVFE------VSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred -----HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHhh
Confidence 2223333555555 78888899999999999888653
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=135.85 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||+|++++..... ...++.+.......+.+. ....+.||||||.. .+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~ 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAI 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHh
Confidence 479999999999999999999876421 112222222222333331 23478999999932 23444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++++|++++|+|++++-+... ..++..+..... ..|+++|+||+|+... ..+.. .....+...
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~--~~v~~-------~~~~~~~~~ 135 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQ--AVITN-------EEAEALAKR 135 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccc--cCCCH-------HHHHHHHHH
Confidence 4556788999999999984433222 334444444332 3599999999998654 22111 012334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+.+++. +|+.++.|+++++++|..
T Consensus 136 ~~~~~~~------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 136 LQLPLFR------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHH
Confidence 5555554 677888999999988864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=143.64 Aligned_cols=163 Identities=16% Similarity=0.203 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEee--------------------------CC----
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTMLK--------------------------AG---- 69 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~~--------------------------~~---- 69 (311)
.+|+++|++|+|||||+.+|++... ........+.|..+.+..+.|. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999987631 1112222344444444444331 02
Q ss_pred --ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 70 --QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 --~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.||||||.. .+...+......+|++++|+|++++ ........+..+.. .+. .|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 689999999943 2444445556778999999999853 33444455554433 221 47999999
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
|+|+... ......+.. +...+... +..+++ +|+.++.|+++|++.|.+.+++
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~~~~i~~------vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAENAPIIP------ISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhccccCCCcEEE------EeCCCCCCHHHHHHHHHHhCCC
Confidence 9998754 333332222 33333321 223444 7888999999999999876643
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=136.20 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCChH-------H
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA---GQVVNVIDTPGLFDSSADPE-------F 89 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~---~~~l~liDTPG~~~~~~~~~-------~ 89 (311)
.++|+.+|.+|.|||||+++|++.+.-....+..-.++..+...+.+.. ...++|+||.||+|.-..++ .
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4899999999999999999999876422222222233333333333311 12789999999998643322 1
Q ss_pred HHHHHHHHH----------H-hccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc
Q 021534 90 VSKEIVKCI----------G-MAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET 157 (311)
Q Consensus 90 ~~~~~~~~~----------~-~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~ 157 (311)
+...+..++ . .-...+|+++|++..+ |++...|.-+++.|... .++|.|+.|.|.+.. ..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK--~e 193 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK--EE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH--HH
Confidence 222222211 1 1125689999999776 88888888888777653 389999999998877 66
Q ss_pred HHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhH
Q 021534 158 LEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRT 195 (311)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~ 195 (311)
+..+... +..-+...|..++-|.....+.+..+
T Consensus 194 L~~FK~k-----imsEL~sngv~IYqfPtDdetva~~N 226 (406)
T KOG3859|consen 194 LKRFKIK-----IMSELVSNGVQIYQFPTDDETVAKAN 226 (406)
T ss_pred HHHHHHH-----HHHHHHhcCceeeeccchHHHHHHHH
Confidence 7666554 44444445777777766544444333
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=140.79 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc--CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK--AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+|+|++|+|||||+|+|++......+ ......|.......+.+ ++..+.+|||||..+ +...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 5899999999999999999875321001 11223455555556666 788999999999653 333344
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+.++|+++||+|+++.-+.. .....+...... ....|+++++||+|+... ....+.... +.......
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFE--ESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHH--HHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence 4578899999999987332111 122222222221 123599999999997654 222221110 11111111
Q ss_pred ---CCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 178 ---DNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 178 ---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+..++. +||.++.|+++++++|.
T Consensus 140 ~~~~~~~~~------~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRDCLVLP------VSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCceEEEE------eeCCCCcCHHHHHHHHh
Confidence 123333 78899999999999885
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=138.11 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++++... .... .+..........+.. .+ ..+.||||||.. .+.....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~-----------~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNY-KATIGVDFEMERFEI-LGVPFSLQLWDTAGQE-----------RFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCC-CCceeeEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHhhHH
Confidence 689999999999999999998764 2211 122222222233333 33 478999999943 2444445
Q ss_pred hccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++.++|++++|+|++++-+.. ...++..+.+...+ ...|+++|.||+|+... ....... .....+....+
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~--~~~~~~~-----~~~~~~~~~~~ 139 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP--AQYALME-----QDAIKLAAEMQ 139 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc--ccccccH-----HHHHHHHHHcC
Confidence 5688999999999997432222 23444444333222 12479999999997544 1111000 01223334344
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +||.++.|+.+++..+.+++.+
T Consensus 140 ~~~~e------~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 140 AEYWS------VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 45444 6888999999999999887754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=140.56 Aligned_cols=162 Identities=21% Similarity=0.185 Sum_probs=99.4
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKD 103 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (311)
++|++|+|||||+|+|++... .....+++|.......+.+ . +..+.+|||||+.+.....+.+...+ ...+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~----~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQF----LAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHH----HHHHh
Confidence 589999999999999999864 2223345666666666666 6 88999999999864321112122222 22355
Q ss_pred CccEEEEEEECCCCC------ChhH-HHHHHHHHHHhCC-----CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 104 GIHAVLLVFSIRNRF------SKEE-GAAIHILESLFGK-----KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 104 ~~d~il~v~d~~~~~------~~~~-~~~l~~l~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
++|++++|+|+++.. ...+ ..+...+...... -...|+++|+||+|.... ....... ..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~-------~~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEEL-------VR 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHH-------HH
Confidence 689999999998442 2222 2222333322110 023699999999998755 3333221 01
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
......+..++. +|+.++.|+.++++.+..+
T Consensus 145 ~~~~~~~~~~~~------~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVVP------ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEEE------EehhhhcCHHHHHHHHHhh
Confidence 112222344454 7888999999999988653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=133.83 Aligned_cols=163 Identities=16% Similarity=0.169 Sum_probs=117.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||.|+-++.+.....+.. ....+++....+.+ ++. .+.||||.| +++++..
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~--sTIGVDf~~rt~e~-~gk~iKlQIWDTAG-----------QERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYI--STIGVDFKIRTVEL-DGKTIKLQIWDTAG-----------QERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhc--ceeeeEEEEEEeee-cceEEEEEeeeccc-----------cHHHhhh
Confidence 4899999999999999999998877522222 23445555666666 554 799999999 4678888
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+|+++|+||+|+|++..-+-+. ..|+..+.+..... .|.++|.||+|+.+. ..+... ........
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~--~~v~~~-------~a~~fa~~ 143 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEK--RVVSTE-------EAQEFADE 143 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhh--eecCHH-------HHHHHHHh
Confidence 8899999999999999995433333 56777777776653 389999999998765 222211 12344455
Q ss_pred cCCc-EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 177 CDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 177 ~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.+.+ ++. +||+...++++.+..+...+....
T Consensus 144 ~~~~~f~E------TSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 144 LGIPIFLE------TSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cCCcceee------cccCCccCHHHHHHHHHHHHHHhc
Confidence 5555 443 788888899999988887665433
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=141.56 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||+|++++... .... .+..+ ......+.+ ++. .+.||||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~-~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETY-DPTIE-DSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccC-CCchH-hhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHHH
Confidence 589999999999999999987653 2211 11111 111122333 444 588999999543 223334
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.+++++|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ..+... ....+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~-------~~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE-------EGAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH-------HHHHHHHHh
Confidence 45778899999999985443333 3455556554332 234599999999998643 221111 012333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..++. +||.++.|+.+++.++.+.+..
T Consensus 137 ~~~~~e------~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 137 GCEFIE------ASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 555554 7888999999999999876654
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=137.79 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++.+.... ... .+++.......+.. ++ ..+.||||||... +....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKY--DPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQ-----------FTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-ccc--CCchhhhEEEEEEE-CCEEEEEEEEECCCccc-----------cchHH
Confidence 78999999999999999999976532 211 11111222223333 44 3677899999654 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++++|+|++++-+..+ ..++..+.+.... ...|+++|+||+|+... ..+... ....+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSRE-------EGQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecHH-------HHHHHHHHc
Confidence 445778999999999984433332 3444455543322 24599999999997643 222110 122333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+.+++. +||.++.|+.+++.++.+.
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCPFYE------TSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHh
Confidence 545554 7888999999999998754
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=136.58 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=99.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
|+++|.+|+|||||++++.+.... ... .+|.......+.. .+..+.+|||||... +...+..++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~---~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~-----------~~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESV---VPTTGFNSVAIPT-QDAIMELLEIGGSQN-----------LRKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-ccc---cccCCcceEEEee-CCeEEEEEECCCCcc-----------hhHHHHHHH
Confidence 789999999999999999987532 211 1222222334444 677899999999543 333344557
Q ss_pred CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEE
Q 021534 103 DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV 182 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (311)
+++|++|||+|++++.+-.. ...++.+........|+++|.||+|+... ....+.... . .+..+....+..++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~--~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE-L--ELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH-h--CChhhcCCCceEEE
Confidence 88999999999985432222 11223333222234699999999997654 333322111 0 02333333333444
Q ss_pred EecCCchhhhhhHHHHHHHHHHHH
Q 021534 183 LFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 183 ~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.-.....+|+.++.|+.++++.+.
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHHh
Confidence 334455678889999999998764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=166.40 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=121.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.....++|+++|.+|+|||||+|+|+|..... ....+|+|.........+ .+..+.+|||||+... .+.+...+.
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~ 345 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEAD---VEGIDSAIA 345 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCC---CccHHHHHH
Confidence 34456889999999999999999999876422 234578888888877788 8889999999998742 123455566
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.....++..+|++|||+|++++++..+..+...++. ...|+++|+||+|..... ....+ +. .
T Consensus 346 ~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~-~~~~~---------~~---~ 407 (712)
T PRK09518 346 SQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQASE-YDAAE---------FW---K 407 (712)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECcccccch-hhHHH---------HH---H
Confidence 666667788999999999987788888777777764 236999999999975431 11111 11 1
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+ ...+ .+||.++.|+.+|++.|.+.++.
T Consensus 408 -lg~~~~~------~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 408 -LGLGEPY------PISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred -cCCCCeE------EEECCCCCCchHHHHHHHHhccc
Confidence 12 1222 37899999999999999887643
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=136.19 Aligned_cols=159 Identities=21% Similarity=0.159 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++.... ... .+++.......+.+ ++ ..+.+|||||..+. ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TDY--DPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-ccc--CCCccceEEEEEEE-CCEEEEEEEEECCCCcch-----------hHH
Confidence 479999999999999999999987542 111 12222222223334 44 36889999996542 223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++.+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+... ..+... ....+...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~--~~~~~~-------~~~~~~~~ 136 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ--RKVSRE-------EGQELARK 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc--ceecHH-------HHHHHHHH
Confidence 3344677899999999984433222 2333444443221 23599999999997654 221110 12333343
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +||.++.|++++++.|...+
T Consensus 137 ~~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIPYIE------TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cCCcEEE------eeCCCCCCHHHHHHHHHHhh
Confidence 3444544 78888999999999987643
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=139.01 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=97.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.++|+++|.+|+|||||++++..... .. . .+|.......+.. .+..+.+|||||... +...
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~-~~-~---~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~ 73 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGES-VT-T---IPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPL 73 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC-CC-c---CCccccceEEEEE-CCEEEEEEECCCChh-----------hHHH
Confidence 3458999999999999999999964432 11 1 1233333344455 677899999999543 4444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHH-HHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHIL-ESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|++|||+|++++-+-.+ ...+..+ ..... ...|+++|+||+|+... ....+.... +. + .
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~ 142 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-H 142 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-c
Confidence 5556889999999999984432222 2222222 21111 12589999999997643 222211111 00 0 0
Q ss_pred hc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.. ...+++ ..+||.++.|+.+++++|.+.+
T Consensus 143 ~~~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 143 SIRDRNWYI----QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccCCCcEEE----EEeeCCCCCCHHHHHHHHHHHh
Confidence 01 111212 2378889999999999997654
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=139.47 Aligned_cols=137 Identities=19% Similarity=0.269 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-------c-------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFM-------S-------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~-------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
.++|+++|++++|||||+++|++..... . .....+.|.......+.+ ++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 4899999999999999999998641100 0 001246777776666666 788999999999643
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE 165 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 165 (311)
+.......+..+|++++|+|+..+....+...+..+... +. .++|+++||+|.... ....+.+..
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~~--~~~~~~~~~- 142 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVDD--EELLELVEM- 142 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCCc--HHHHHHHHH-
Confidence 333334456678999999999877888887877777653 22 248899999998744 333332221
Q ss_pred CCchHHHHHHhcC
Q 021534 166 CPKPLKEILQLCD 178 (311)
Q Consensus 166 ~~~~~~~~~~~~~ 178 (311)
.+..++...+
T Consensus 143 ---~i~~~l~~~g 152 (195)
T cd01884 143 ---EVRELLSKYG 152 (195)
T ss_pred ---HHHHHHHHhc
Confidence 2566666544
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=142.49 Aligned_cols=162 Identities=12% Similarity=0.022 Sum_probs=102.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
....++|+++|.+|+|||||+++++............+.+ .....+... ....+.||||||... +.
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~--~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 76 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEK-----------FG 76 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcccee--EEEEEEEECCeEEEEEEEECCCchh-----------hh
Confidence 3567999999999999999999987655311111111222 222222221 234889999999544 23
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++.++|++|+|+|++++.+-.. ..++..+.+.+. ..|+++|.||+|+... ....+. + .+.
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~--~v~~~~--------~-~~~ 142 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNR--QVKAKQ--------V-TFH 142 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhhhc--cCCHHH--------H-HHH
Confidence 333445788999999999985544333 345555555432 3599999999997533 111111 1 222
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+.+++.+|...+.+
T Consensus 143 ~~~~~~~~e------~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 143 RKKNLQYYE------ISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HhcCCEEEE------cCCCCCCCHHHHHHHHHHHHHc
Confidence 333445544 7889999999999999876643
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=139.29 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=94.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.++|+++|.+|+|||||++++...... . . . +|.......+.. .+..+.+|||||... +...+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~-~-~--~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-T-T-I--PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-c-c-c--CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 3589999999999999999999865431 1 1 1 122222333444 667899999999542 33444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++|++|||+|++++.+-.+ ....+.+..... ...|+++|+||+|+... ....+.+++.. . .
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~------~---~ 139 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL------T---R 139 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC------C---c
Confidence 556788999999999985422221 122232222211 12599999999997643 00112211110 0 0
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.....+.. .++||.++.|+.+++++|.
T Consensus 140 ~~~~~~~~----~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 140 IRDRNWYV----QPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred cCCCcEEE----EEeeCCCCCChHHHHHHHh
Confidence 00111222 2378999999999999885
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=137.50 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||++++.+... . . ..+|.......+.. .+..+.+|||||... +...+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~-~---~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~-----------~~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-M-Q---PIPTIGFNVETVEY-KNLKFTIWDVGGKHK-----------LRPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-C-C---cCCcCceeEEEEEE-CCEEEEEEECCCChh-----------cchHHHHH
Confidence 589999999999999999998743 1 1 23344444445555 677899999999653 22234445
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh----
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL---- 176 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 176 (311)
+.++|+++||+|++++-+-.+ ..++..+..... ....|+++|.||+|+... ...++. ..++..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~~~~~~ 131 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEM---------TELLSLHKLC 131 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHH---------HHHhCCcccc
Confidence 678899999999984422222 222222221111 112589999999997643 222221 111111
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++..+.. ..+||+++.|+++++++|.+.+..
T Consensus 132 ~~~~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 132 CGRSWYI----QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CCCcEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 1112222 136889999999999999876654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-18 Score=162.41 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=115.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC- 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~- 97 (311)
..++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.||||||+......... .+.+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~-~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTG-AEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchh-HHHHHHHH
Confidence 458999999999999999999999874212 23456777776666677 7889999999998643221110 1111111
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+++.+|++++|+|++++.+..+..++..+.. ...|+++|+||||+... ......... +...+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~~ 593 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDRV 593 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccCC
Confidence 1234678999999999998888888776665543 23599999999998754 222221111 11111111
Q ss_pred -CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 -DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 -~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+++ .+||.++.|+.+|++.+.+....
T Consensus 594 ~~~~ii------~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 594 TWARRV------NLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 11222 37999999999999999988765
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-18 Score=138.71 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++..... ...+..+.......+.+ ++ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhH
Confidence 479999999999999999999876521 11222222333334444 33 3678999999432 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+.++|++|+|+|++++-+... ..++..+....+. ..|+++|.||+|+... ..+.... ...+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence 445788999999999985433332 3344555554332 2589999999997744 2221111 12233333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+.+++. +|+.++.|+++++..+.+.+..
T Consensus 136 ~~~~~e------vSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 136 NIPFFE------TSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444544 7888889999999998876643
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.9e-18 Score=134.06 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||+|++++.... .......+.......+.+ .+ ..+.+|||||... +....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN--EKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQER-----------YHALG 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHH-----------HHHhh
Confidence 48999999999999999999987652 122222222333333333 33 3688999999332 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..++..+...... ..|+++|+||+|.... ..+.. ..+..+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~~-------~~~~~~~~~~ 135 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVSK-------SEAEEYAKSV 135 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCH-------HHHHHHHHHc
Confidence 344678999999999984433222 3344555554433 3599999999998744 22111 0123334444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +|+.++.|+.++++++.+.+
T Consensus 136 ~~~~~~------~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 136 GAKHFE------TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 555544 67888899999999987643
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=137.43 Aligned_cols=156 Identities=17% Similarity=0.079 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|||||||+++++..... .. ...|.........+. ....+.+|||||..... ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG-----------GL 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CC---CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc-----------cc
Confidence 48999999999999999999865431 11 122333333332221 23478999999965421 11
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....+..+|++|+|+|++++.+... ..++..+....+ ..|+++|.||+|+... ..... ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence 2233678899999999985444333 345566666553 3699999999997633 11111 1122233
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +||.++.|++++++++.+.+.+
T Consensus 132 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KNLQYYE------ISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cCCEEEE------EeCCCCCChHHHHHHHHHHHHh
Confidence 3444554 7889999999999999876643
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=144.88 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=77.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
.++.|+||||+..+.. ..+...+.. .+..+|+|+||+|++...+..+..+++.+.+.. + ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~-K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVG-Q--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcC-C--CCCEEEEEEccc
Confidence 5889999999986421 223333333 467789999999998667888888888887632 1 138999999999
Q ss_pred CCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 150 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..+......+..... +...+..... .|....++||..+.+++.|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 874321112221111 2222222111 1222233899999999999998876
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-18 Score=133.95 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++.... ... .+++.......+.+ ++. .+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEY--DPTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCc--CCcchheEEEEEEE-CCEEEEEEEEECCCCcc-----------hHHHH
Confidence 68999999999999999999987642 111 11111112223334 443 577899999543 23333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+..+ ..++..+.+.... ...|+++|+||+|+... ...... ...+....
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--eecHHH--------HHHHHHHh
Confidence 445677899999999984333222 2344444443322 23599999999997653 211111 23333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +|+.++.|++++++.+.+.
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 136 GIPYIE------TSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHH
Confidence 555554 7888999999999988754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=138.92 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=105.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|++|+|||||++++++...... ..+..........+.+ ++ ..+.||||||.. .+..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~-----------~~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQE-----------RYRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHH
Confidence 458999999999999999999998765221 1222223333334444 33 388999999932 2444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++.++|++|+|+|+++.-+... ..++..+....+. ..|+++|+||+|+... ..+... ....+..
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~--~~~~~~-------~~~~l~~ 145 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHL--RSVAEE-------DGQALAE 145 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccc--cCCCHH-------HHHHHHH
Confidence 45556788999999999984433333 3455666655432 3599999999997543 221111 1223334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|++++++.+...+..
T Consensus 146 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 KEGLSFLE------TSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44555554 7888899999999998776643
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.9e-18 Score=135.06 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||+|++++........ +..+.......+.+ .+ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTV-DGKKVKLAIWDTAGQER-----------FRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhhh
Confidence 489999999999999999999876422212 22222222222333 33 4789999999542 22233
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++.+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.... ....+ ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~ 135 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKH 135 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHc
Confidence 344678999999999984433333 334555555443 2346899999999987331 11111 22333334
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+..++. .|+.++.|+.++++.+.+
T Consensus 136 ~~~~~~------~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 136 NMLFIE------TSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CCEEEE------EecCCCCCHHHHHHHHHH
Confidence 444544 688888999999988765
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=135.33 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+|+|.+|+|||||+|++++.... .... +++.......+.. ++ ..+.+|||||..+. ....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~-----------~~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV-DDYD--PTIEDSYRKQIEI-DGEVCLLDILDTAGQEEF-----------SAMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-cccC--CchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------hHHH
Confidence 47999999999999999999987642 2111 1121222223333 33 36789999996542 1222
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..+...+.+.... ...|+++|.||+|+... ..+... ....+....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 135 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTE-------EGKELARQW 135 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHH-------HHHHHHHHc
Confidence 334667899999999984433222 2333344443322 23599999999997653 211110 123334444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +||.++.|++++++.|.+.+
T Consensus 136 ~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 136 GCPFLE------TSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred CCEEEE------eecCCCCCHHHHHHHHHHHH
Confidence 555555 78888999999999988655
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-18 Score=139.21 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+|++++... .....++.+.......+.+.++ ..+.||||||... +...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~--~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRF--AEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence 47999999999999999999998764 2222222222333333333223 3788999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++-+-.. ..++..+...... ...|+++|.||+|+... ..+.. .....+...
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~-------~~~~~~~~~ 138 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTR-------EEAEKLAKD 138 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCH-------HHHHHHHHH
Confidence 4455788999999999985433232 3444444444332 23478999999997653 22111 012334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++..++. +|+.++.|+.++++.|.+.+..
T Consensus 139 ~~~~~~e------~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 139 LGMKYIE------TSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred hCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 5555554 6888899999999999876654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-18 Score=134.94 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeE-EEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTC-EMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~-~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||++++.+... +... ..|... ....+.+ ++ ..+.||||||... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-PDYH---DPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CCCc---CCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 7899999999999999999987654 2111 112211 1223344 44 3688999999543 3444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++.+... ..+...+..... ....|+++|.||+|+... ..+... ....+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~-------~~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTE-------EGRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHH-------HHHHHHHH
Confidence 5556788999999999986655444 234445554322 123599999999997644 222211 12333344
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +||.++.|++++++++...+.
T Consensus 137 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 137 FNCPFFE------TSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred hCCEEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 4555554 788899999999999986554
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=136.26 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||++++++...+..... +|.......+.. .+..+.+|||||... +...+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 589999999999999999998653222111 222222333444 677899999999543 33344456
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC-CCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+.++|++|||+|++++.+... ...+..+..... .....|+++|+||+|+... ....+.... .. +..+ . ..
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-l~--~~~~-~--~~ 137 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-LG--LENI-K--DK 137 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-hC--Cccc-c--Cc
Confidence 788999999999985433221 223333322111 1124699999999997654 222111110 00 0000 0 11
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.+.. ..+||.++.|+++++++|.
T Consensus 138 ~~~~----~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 138 PWHI----FASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eEEE----EEeeCCCCCchHHHHHHHh
Confidence 1111 2378899999999999885
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=133.84 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||+|++++...... ..+..+.......+... ....+.+|||||... +.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN--YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc--cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHHH
Confidence 4799999999999999999998875322 11111222222222221 235788999999532 333444
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..+..+|++++|+|++++-+... ..++..+..... ...|+++++||+|.........+ . +..+....+
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~~ 136 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTE-E--------AQQFAKENG 136 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHH-H--------HHHHHHHcC
Confidence 55778999999999984322222 334555554432 23599999999998633111111 1 233444445
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..++. .|+.++.|+.+++.+|.
T Consensus 137 ~~~~~------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 137 LLFFE------TSAKTGENVEELFQSLA 158 (159)
T ss_pred CeEEE------EecCCCCCHHHHHHHHh
Confidence 55554 67777889999998874
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-18 Score=133.66 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||++.+++....+. ..+..+.......+.. .+ ..+.+|||||... +....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~ 66 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTIT 66 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhhH
Confidence 4799999999999999999998765221 1122222222233444 33 3678999999432 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+-.. ..++..+..... ...|+++|.||.|+... ..+... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~--~~v~~~-------~~~~~~~~~ 135 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQK--RQVGDE-------QGNKLAKEY 135 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc--cCCCHH-------HHHHHHHHc
Confidence 445788999999999985433222 344444444432 23599999999997644 222111 123333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +||.++.|+++++.+|.+.
T Consensus 136 ~~~~~e------~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 136 GMDFFE------TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHhh
Confidence 544544 7888889999999998754
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=135.38 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+++++.... .... .+++.......+.. ++ ..+.+|||||... +....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKY--DPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQ-----------FTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-Cccc--CCcchheEEEEEEE-CCEEEEEEEEECCCccc-----------chhHH
Confidence 6899999999999999999986543 2211 12221121223344 43 3667999999643 33333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++++|+|.+++-+..+ ..++..+..... ....|+++|+||+|+... ..+... ....+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVVGKE-------QGQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEEcHH-------HHHHHHHHh
Confidence 445778899999999874433222 334444443322 233599999999998644 221110 122333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +||.++.|+.+++.++.+.+
T Consensus 137 ~~~~~~------~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFLE------TSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCEEEE------eeCCCCCCHHHHHHHHHHHh
Confidence 555554 78889999999999987654
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=133.03 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||+|++++...... ..+..+.......+.+ .+. .+.+|||||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC--cCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 4899999999999999999998764211 1122222233333444 443 567999999532 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++|++|||+|++++.+... ..+...+...+.. ....|+++|+||+|+..+.....+. ...+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHH
Confidence 445788999999999985433222 2233333332321 1235999999999987431112221 233344
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+ ..++. .|+.++.|+.++++.|.+.+.+
T Consensus 138 ~~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 138 SNGNIPYFE------TSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HcCCceEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 444 34444 6888899999999998876543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-18 Score=130.71 Aligned_cols=163 Identities=16% Similarity=0.144 Sum_probs=118.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
...+|+|+|..++||||||++......- ..-.+....+.....+.+ .++ .+.||||.| ++++..
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd--~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAG-----------QERFrs 86 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFD--NTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAG-----------QERFRS 86 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhc--ccccceeeeEEEEEEEEE-cCcEEEEEEEeccc-----------HHHHhh
Confidence 4489999999999999999999866541 122233344455555555 554 889999999 678999
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..+++++.++|.|+|++++-+-+. ..|++-+.+..|.+. ..+++|.||.|+.++ ..+..... .....
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk--rqvs~eEg-------~~kAk 156 (221)
T KOG0094|consen 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK--RQVSIEEG-------ERKAK 156 (221)
T ss_pred hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch--hhhhHHHH-------HHHHH
Confidence 99999999999999999986655443 677777777676632 368899999999977 43332211 22334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+.-|.. +||+.+.++..|+..|...++.
T Consensus 157 el~a~f~e------tsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 157 ELNAEFIE------TSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HhCcEEEE------ecccCCCCHHHHHHHHHHhccC
Confidence 44555544 7889999999999999887754
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=138.39 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||++++++.... ... +..+.......+... .+..+.+|||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTV--PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcC--CccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 589999999999999999999876542 111 111112222222211 345899999999432 3334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCC-hhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|+++||+|++++-+..+ ...+..+...... ...|+++|+||+|..... ...+..+... .....
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~~~~~~~~~~~~~------~~~~~ 141 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNALSVSEVEKLLAL------HELSA 141 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccccCCHHHHHHHhCc------cccCC
Confidence 4555788999999999984322222 2233333332221 246999999999976430 0111111110 00000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++ ++||.++.|+++++.+|.+.+
T Consensus 142 ~~~~~~~------~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 142 STPWHVQ------PACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCceEEE------EeecccCCCHHHHHHHHHHHH
Confidence 0011122 378899999999999998766
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=137.89 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||++++..... ... .+|.......+.. .+..+.||||||.. .+...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~-----------~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VTT----IPTIGFNVETVEY-KNISFTVWDVGGQD-----------KIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-ccc----cCCcceeEEEEEE-CCEEEEEEECCCCH-----------HHHHH
Confidence 4568999999999999999999986543 111 2233333444555 67889999999932 34455
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|++|||+|++++-+-.+ ....+...+... ...|++||.||+|+... ...++... .+.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~ 144 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLG 144 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhC
Confidence 5666889999999999984432222 222333332211 13589999999997654 22222111 111
Q ss_pred hc--CCc-EEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LC--DNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~--~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. ..+ ++. ..+||.++.|+.+++++|.+.+.
T Consensus 145 l~~~~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 LHSLRQRHWYI----QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred ccccCCCceEE----EeccCCCCCCHHHHHHHHHHHHh
Confidence 10 111 111 13688999999999999987653
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=152.93 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=88.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.||+|||||+|+|++.....+ ...+++|.......+.+ ++..+.+|||||+.++. +.+...-...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~~ 275 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIEK 275 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHHH
Confidence 3458999999999999999999999763212 23467788877777888 88899999999987642 1111111122
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
...++..+|++++|+|++++.+..+. ++..+.. ...|+++|+||+|+..
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 23456789999999999866665554 4433322 1359999999999753
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=139.28 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=102.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
.+....++|+|+|.+|+|||||+++|++... ... .+..+.......+.+ ++ ..+.||||||...
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------- 74 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLTV-GGKRLKLTIWDTAGQER---------- 74 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEEE-CCEEEEEEEEECCCchh----------
Confidence 3444568999999999999999999998764 221 122222333333444 33 4789999999544
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
+......+++.+|++|+|+|++++-+.... .+...+.. .......|+++|.||+|+... ..+... ..
T Consensus 75 -~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~-------~~ 143 (211)
T PLN03118 75 -FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSRE-------EG 143 (211)
T ss_pred -hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHH-------HH
Confidence 233334457788999999999854333332 12233332 222233589999999997644 222110 11
Q ss_pred HHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+....+..++. +|+.++.|+++++..|...+..
T Consensus 144 ~~~~~~~~~~~~e------~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 144 MALAKEHGCLFLE------CSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 2233333444444 7888889999999999977644
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.9e-18 Score=133.96 Aligned_cols=158 Identities=12% Similarity=0.066 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK-AFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||++++.+.. .++... .+.....+....+... ....+.+|||||. +.+...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNY-LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ-----------ELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccC-CCceEEEEEEEEEEeCCCCEEEEEEEECCCH-----------HHHHHH
Confidence 489999999999999999998642 232221 1111112222223221 2358999999993 223344
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+...+..+|+++||+|++++-+... ..++..+.... ...|+++|+||+|+... ..+.... ...+...
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 136 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFAQA 136 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHHHH
Confidence 4455788999999999984433222 34444444432 23599999999997654 2222111 1222233
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+..++. +|+.++.|+.++++.+.+.
T Consensus 137 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 137 NQLKFFK------TSALRGVGYEEPFESLARA 162 (164)
T ss_pred cCCeEEE------EeCCCCCChHHHHHHHHHH
Confidence 3434444 7888899999999988764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=141.32 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++.+|+++|.||+|||||||+|++....+. ...+.++....+.....++..++||||||++|....+.+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~---- 109 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ---- 109 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHH----
Confidence 44678999999999999999999996554222 212222222222222227789999999999996555444444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC----------ChhcHHHHhhhcC
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED----------NDETLEDYLGREC 166 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~----------~~~~~~~~~~~~~ 166 (311)
.+..+++..|++++++++.+|.-..+..+++-+.-.+.. +++++++|.+|...+ ....+.+++.. .
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k 185 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-K 185 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-H
Confidence 444456777999999999878767777776666554432 699999999998744 12344444443 1
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+..++.. -.+++. .+....-|++.|...+...++.+
T Consensus 186 ~~~~~~~~q~-V~pV~~------~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 186 AEALGRLFQE-VKPVVA------VSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHhh-cCCeEE------eccccCccHHHHHHHHHHhCccc
Confidence 1112222222 111222 34566678999999999888653
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=135.99 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=112.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC-----CCCcceeEEEEEEEee-CCc--eEEEEeCCCCCCCCCChHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG-----SSGVTKTCEMQRTMLK-AGQ--VVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-----~~~~T~~~~~~~~~~~-~~~--~l~liDTPG~~~~~~~~~~~~ 91 (311)
.++|.|+|.+|.||||++|+|+...+..+... +...|+........+. ++. +++++|||||+|.- .++..|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence 48999999999999999999987665433222 2234544444433332 232 88999999999963 344555
Q ss_pred HHHHHHHHhc------------------cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 92 KEIVKCIGMA------------------KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 92 ~~~~~~~~~~------------------~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+.|..++... ...+||++|++..+ +.+++.|.++|+.|.+.. +++.|+.|+|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccccc
Confidence 5555444321 14589999999886 899999999999999864 8999999999886
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
- +...+|.+. +++-+...+..+++++...
T Consensus 199 l--eEr~~Fkqr-----I~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 199 L--EERSAFKQR-----IRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred H--HHHHHHHHH-----HHHHHHhcCcccccccccc
Confidence 6 666666665 7777888888888866554
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=133.73 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML-KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.+|+++|.+|+|||||+|++++... +.... ...... ...... ..+..+.+|||||.... ...+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~--~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~ 65 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF-PENVP--RVLPEI-TIPADVTPERVPTTIVDTSSRPQD-----------RANLA 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC-CccCC--Ccccce-EeeeeecCCeEEEEEEeCCCchhh-----------hHHHh
Confidence 3799999999999999999998764 22111 111111 111111 13457889999996542 11122
Q ss_pred hccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChh-cHHHHhhhcCCchHHHHHHh
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 176 (311)
..+..+|++++|+|++++-+... ..++..+..... ..|+++|+||+|+.+.... .+++. +..+...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~~~~~~~~~~~--------~~~~~~~ 134 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDGSSQAGLEEE--------MLPIMNE 134 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcccccchhHHHHH--------HHHHHHH
Confidence 33578899999999985444333 245555665432 3599999999998654111 11111 1122222
Q ss_pred cC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.. ..++ .+||.++.|+++++..+...+
T Consensus 135 ~~~~~~~~------e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 135 FREIETCV------ECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HhcccEEE------EeccccccCHHHHHHHHHHHh
Confidence 11 1333 378889999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=136.58 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|++++..... . .+|.......+....+..+.+|||||... +...+..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~---~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--T---IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--c---cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 58999999999999999999877521 1 12222333334442456899999999542 33334445
Q ss_pred cCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+..+|+++||+|++++.+.. ...+...+.... ....|+++|+||+|+... ....+.... .. ...+....+.
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~~~~~~~ 137 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH--IKGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKYCSDRDW 137 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh--hcCCCEEEEEECcccccC--cCHHHHHHH-cC--CcccCCCCcE
Confidence 77889999999998443222 222222222111 123599999999997543 222211111 00 0111111111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++ .+||.++.|+++++++|.+
T Consensus 138 ~~~------~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQ------PCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEE------ecccccCCChHHHHHHHhc
Confidence 222 3788999999999998854
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=137.06 Aligned_cols=160 Identities=19% Similarity=0.110 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||++++.+........+..+. .....+.+ ++ ..+.+|||||..+. ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~---~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIED---SYRKQCVI-DEETCLLDILDTAGQEEY-----------SAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhh---EEEEEEEE-CCEEEEEEEEeCCCCccc-----------hhh
Confidence 489999999999999999999986542111111111 11222333 33 36789999997652 222
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..+++++|++++|+|++++-+-.. ..+...+.+.... ...|+++|.||+|+... ..+.... .......
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~ 139 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS 139 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 3345778999999999985443222 3344445443322 23589999999997543 2221110 1222333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +||.++.|+.+++.++.+.+.
T Consensus 140 ~~~~~~e------~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 140 FGIPFLE------TSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred hCCEEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 3444444 788899999999999876653
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=137.22 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCccee--EEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKT--CEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~--~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
++|+|+|.+|+|||||++++++.... ... ...|.. .....+.. ++. .+.+|||||... +..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGP--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSER-----------YEA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcC--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 48999999999999999999987642 111 112222 22223344 444 567999999543 222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++.++|+++||+|++++-+... ..++..+.... ...|+++|+||+|+.... .... .+. ...+..+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~-~v~---~~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQD-RSLR-QVD---FHDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccc-cccC-ccC---HHHHHHHHH
Confidence 23344678999999999984432222 34555555432 235999999999976431 0000 000 011233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +|+.++.|++++++.+.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 138 EIKAQHFE------TSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44555544 688888999999999987664
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=136.66 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+..+|+++|.+|+|||||++++++..... . .+|.......+.+ .+..+.+|||||... +...+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 76 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH--T---SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSW 76 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC--c---CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHH
Confidence 45899999999999999999998765421 1 2233333445555 678899999999543 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH-HHHHh
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-EILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 176 (311)
..++.++|+++||+|++++-+... ...+..+.+..+ ....|+++++||+|+... ...++.... +. ..+..
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~~~~~~~ 148 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-----LGLTSIRD 148 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-----hCcccccC
Confidence 455778999999999984322111 222222221111 123599999999997643 122211111 00 00011
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
...+++ ++||.++.|+++++++|.
T Consensus 149 ~~~~~~------~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 149 HTWHIQ------GCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CceEEE------ecccCCCCCHHHHHHHHh
Confidence 111222 378889999999999885
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=131.62 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=102.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH---H
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI---G 99 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~---~ 99 (311)
|+++|.+|+|||||+|+|++....+......+.|....... + +..+++|||||+.+..... .....+...+ .
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN--V--NDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE--c--cCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence 79999999999999999996544333333445554443332 2 3389999999998754321 1112222222 2
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH--hc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ--LC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 177 (311)
.....++++++++|.+...+.....+++++... + .|+++|+||+|.... ......... +...+. ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 223457899999999866566666666666653 2 489999999998755 333322222 233332 22
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..++++ .|+.++.++.+++++|.++
T Consensus 145 ~~~~~~------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIIL------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceEE------EecCCCCCHHHHHHHHHHh
Confidence 334444 6777788999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=134.10 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++... ... ..+..........+.. ++ ..+.||||+|... +...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~-~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DED-YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCC-CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHhh
Confidence 4799999999999999999987654 221 1122222222233444 44 4789999999432 33445
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh-hcHHHHhhhcCCchHHHHHHh
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (311)
..+++++|++++|+|++++-+..+ ..++..+...... ..| ++|.||+|+..... ........ ....+...
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~~~~~~~~~~~~~~-----~~~~~a~~ 138 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLFADLPPEEQEEITK-----QARKYAKA 138 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhccccccchhhhhhHH-----HHHHHHHH
Confidence 556889999999999985544433 3455555554332 235 68899999863210 11000111 13344444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+..++. +||.++.|+++++.++.+.+.
T Consensus 139 ~~~~~~e------~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 139 MKAPLIF------CSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4555544 788999999999999887654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=131.84 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
...+|+++|++|+|||||++++++....+. ..++.+.......+.+ .+ ..+.+|||||... +..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 348999999999999999999987654211 1122222333334444 44 3578899999532 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|+++..+... ..++..+...... ..|+++|.||+|+... ..+..... ..+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~--~~i~~~~~-------~~~~~ 140 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAER--REVSQQRA-------EEFSD 140 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cccCHHHH-------HHHHH
Confidence 33445778999999999984433222 2444455554432 2489999999997644 22211111 11222
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.....++. +|+.++.|+.++++.|.+.
T Consensus 141 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 141 AQDMYYLE------TSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HcCCeEEE------eeCCCCCCHHHHHHHHHHH
Confidence 22333443 7888899999999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=135.96 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ-RTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+|+|.+|+|||||++++++... +... ..|....+. .+...++ ..+.||||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~~~~---~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-PEEY---VPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-CCCC---CCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 4899999999999999999998764 2111 122222221 2333112 3689999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
...++.++|++|+|+|++++-+-.+. .++..+.... ...|+++|.||+|+... ......+ .......+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~v---~~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKD--KNLDRKV---TPAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhC--ccccCCc---CHHHHHHHHH
Confidence 34457889999999999854443332 2444444322 23599999999997643 1110000 0111334444
Q ss_pred hcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+. .++. +|+.++.|+.+++..+...+.
T Consensus 138 ~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 138 KQGAFAYLE------CSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HcCCcEEEE------ccCCCCCCHHHHHHHHHHHHH
Confidence 4454 4443 788889999999999887653
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=135.82 Aligned_cols=171 Identities=21% Similarity=0.185 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||+|+|+|......+..+.+ +|.....+ .......+.+|||||+.+.....++....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~~~l~~---- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDDYLEE---- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHHHHHHH----
Confidence 7899999999999999999999653222222222 22222222 11123578999999998764433322221
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChh-------cHHHHhhhcCCchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-------TLEDYLGRECPKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~-------~~~~~~~~~~~~~~ 170 (311)
..+.++|++++|.+ .+++..+..+++.+... + .|+++|+||+|....... ..++++.. ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 12567899998854 47888888888888874 3 489999999998643110 12233332 12224
Q ss_pred HHHHHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 171 ~~~~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+...+ ..+++.+... ..+.++..|.+.+...+++
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~----~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFD----PSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCC----hhhcChHHHHHHHHHHhhH
Confidence 44444322 3455532221 1346788888888777754
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-18 Score=136.87 Aligned_cols=161 Identities=12% Similarity=0.104 Sum_probs=98.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||++++..... .. . .+|.......+.. .+..+.+|||||... +...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~-~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEV-VT-T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-cc-c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 4458999999999999999999965443 11 1 1233333444555 677899999999532 4444
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|++|||+|++++-+-.+ ....+.+.+... ...|+++|+||.|+... ....+.... +. +.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~ 146 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LH 146 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CC
Confidence 5566889999999999984322221 122233332221 23589999999997543 222211111 00 00
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+. ..++. ..+||.++.|+++++++|.+.+.
T Consensus 147 ~~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 147 SVRQRNWYI----QGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred cccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHH
Confidence 111 11222 13688899999999999987653
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=131.58 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH-H
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV-K 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~-~ 96 (311)
.++|+++|++|+|||||++++++... +.. ..+..+.......+.+ .+ ..+.||||||..+ +. .
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~-~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~ 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PER-TEATIGVDFRERTVEI-DGERIKVQLWDTAGQER-----------FRKS 67 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCc-cccceeEEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHHh
Confidence 37999999999999999999987653 111 1122222233334444 44 4789999999432 22 1
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++-+... ..++..+...... ...|+++|.||+|+... ..+... ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~-------~~~~~~~ 137 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQ--IQVPTD-------LAQRFAD 137 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhh--cCCCHH-------HHHHHHH
Confidence 23445788999999999985444333 3444445443321 23599999999997644 221110 1122333
Q ss_pred hcCCcEEEecCCchhhhhh---HHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKR---TEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~---~~~i~~l~~~i~~~~ 209 (311)
.....++. +||.+ +.++.+++..+.+.+
T Consensus 138 ~~~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFE------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence 33444544 56665 677888887776543
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=134.87 Aligned_cols=155 Identities=11% Similarity=0.074 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+++|.+|+|||||++++..... .. . .+|.......+.. ....+.+|||||... +...+..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~~-~---~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~ 63 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-VT-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-cc-c---CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence 3799999999999999999965543 22 1 1222233333444 667899999999542 3444555
Q ss_pred ccCCccEEEEEEECCCCCC--hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNRFS--KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++.++|++|||+|++++.+ .....+...+..... ...|+++++||+|+... ....+...... +..+ . +
T Consensus 64 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~--~~~~~i~~~~~---~~~~-~--~ 133 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPNA--MSAAEVTDKLG---LHSL-R--N 133 (159)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCCC--CCHHHHHHHhC---cccc-C--C
Confidence 6889999999999984322 222222222221111 12599999999997543 22222111100 0000 0 1
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..+++ ..+||+++.|+++++++|.
T Consensus 134 ~~~~~----~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWYI----QATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEEE----EEeeCCCCCCHHHHHHHHh
Confidence 11111 2368899999999999875
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=141.55 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCCcceeEEEEEEEeeCCceE
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK-----------------------------AGSSGVTKTCEMQRTMLKAGQVV 72 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~~~~l 72 (311)
+|+++|++|+|||||+|+|++....... ....+.|.......+.+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999865432110 00156777777777777 88899
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 73 NVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
.||||||+.+ +...+..++..+|++|+|+|++.+....+...+..+.. .+. .++|+|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999643 22223334678899999999986666555554444433 332 36888999999864
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCc---EEEecCCchhhhhhHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNR---CVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~~~~sa~~~~~i~~ 200 (311)
............ +..++...+.. +++ +||.++.|+.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~~ii~------iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDITFIP------ISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCceEEE------EeCCCCCCCcc
Confidence 321222222222 45555555532 344 67777777664
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=136.95 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc-cccccC-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK-AFMSKA-------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~-------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
..+|+++|.+|+|||||+|+|++.. .+.... ...+.|.......+.+ .+..+.+|||||..+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~--- 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD--- 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH---
Confidence 3689999999999999999998631 221111 1134555555556666 778999999999654
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+...+..++.++|++++|+|++++.......++..+.. ...|+++|+||+|+...
T Consensus 78 --------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 --------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-----LGLKPIVVINKIDRPDA 132 (194)
T ss_pred --------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 33344455778899999999985544444444444332 12589999999998644
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-18 Score=135.72 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=96.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.++|+++|++|+|||||+++|.+.... . ...|.......+.+ .+..+.+|||||... +...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~--~---~~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS--H---ITPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc--c---cCCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 34699999999999999999999987531 1 11222233344555 678899999999432 3344
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++.++|++++|+|+++.-+... ...+..+.+... ....|+++++||+|.... ....+.... + .+. .
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l-~~~-~ 144 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEA-----L-NLH-D 144 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHH-----c-CCc-c
Confidence 4455778999999999984321111 122222211111 123599999999998654 333332221 0 000 0
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
...+...+ ..+||.++.|+++++++|.+
T Consensus 145 ~~~~~~~~---~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 145 LRDRTWHI---QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cCCCeEEE---EEeECCCCCCHHHHHHHHhc
Confidence 01111111 24688999999999999853
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=137.68 Aligned_cols=164 Identities=18% Similarity=0.138 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||++++++.... . . ..|.........+ ....+.||||||... +......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~-~---~~Tig~~~~~~~~-~~~~l~iwDt~G~e~-----------~~~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-D-T---VSTVGGAFYLKQW-GPYNISIWDTAGREQ-----------FHGLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-C-C---CCccceEEEEEEe-eEEEEEEEeCCCccc-----------chhhHHH
Confidence 47999999999999999999987642 1 1 2233333333334 456799999999653 2222334
Q ss_pred ccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChh---------cHHH-HhhhcCCch
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDE---------TLED-YLGRECPKP 169 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~---------~~~~-~~~~~~~~~ 169 (311)
+++.+|++|+|+|++++-+-... .++..+.+.... ..|+++|.||+|+...... .+.. .........
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 47889999999999855443332 233334433322 3589999999998651000 0000 000001112
Q ss_pred HHHHHHhcC--------------CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCD--------------NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~--------------~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+....+ ..++ .+||.++.|+++++..+.+.+
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~------E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCF------ETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHhCccccccccccccccceEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 334444433 1233 478999999999999888655
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=135.10 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=93.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||++++...... .. ..|.......+.+ .+..+.+|||||..+ +...+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TT---IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--Cc---CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 5899999999999999999776542 11 1233333344455 677899999999653 33344555
Q ss_pred cCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+..+|++|||+|++++.+.. ...+...+.... ....|+++|+||+|+... ....+.... .. .. .....+.
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~~~ 135 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA--LSEAEISEK-LG--LS-ELKDRTW 135 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC--CCHHHHHHH-hC--cc-ccCCCcE
Confidence 77899999999998432211 222222332211 123699999999997644 222211111 00 00 0000111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+++ ++|+.++.|++++++++.+
T Consensus 136 ~~~------~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIF------KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEE------EeeccCCCCHHHHHHHHhc
Confidence 233 3788999999999998753
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=137.47 Aligned_cols=159 Identities=21% Similarity=0.197 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccc------cC-C------CCCcceeEEEEEEEee----CCceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMS------KA-G------SSGVTKTCEMQRTMLK----AGQVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~------~~-~------~~~~T~~~~~~~~~~~----~~~~l~liDTPG~~~~ 83 (311)
.+|+++|++|+|||||+++|++...... .. . ..+.|.......+.+. .+..+.||||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3799999999999999999987431100 00 0 1123333332223221 3457889999997652
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
...+..++.++|++|+|+|++++.+..+...+..+.. ...|+++|+||+|+... . .....
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~--~-~~~~~- 140 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPSA--D-PERVK- 140 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCcC--C-HHHHH-
Confidence 2233344667899999999986665555444433322 12589999999997543 1 11111
Q ss_pred hcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 164 RECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+... .....+|+.++.|+++|++++...+
T Consensus 141 -------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 141 -------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 11222222210 0112378899999999999998754
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=137.98 Aligned_cols=163 Identities=10% Similarity=0.037 Sum_probs=97.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|.+|||||||+|++.+.... .. .+|.......+.+ .+..+.+|||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~~---~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--QH---QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--cc---CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 45699999999999999999999987541 11 1222233344455 678899999999543 3334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|+++||+|++++-+-.. ...+..+.+.. .....|+++|+||+|+... ....+.+.+.- .....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 4566789999999999984321111 12222222111 0123599999999997543 11222222221 10000
Q ss_pred hc---CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 176 LC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 176 ~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+ +.+. .....+|+.++.|+++++++|.+
T Consensus 151 ~~~~~~~~~---~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRP---LEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCce---eEEEEeecccCCChHHHHHHHHh
Confidence 00 1111 11234788889999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=141.19 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=124.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH-HHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE-FVSKEIVK 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~-~~~~~~~~ 96 (311)
...++|+|+|.||+|||||.|.+.|..+++ .+....|+......+-..+..++.++||||+.....-.. .....+.+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~--vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSA--VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccc--ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 356899999999999999999999999844 444556666666655554777999999999987542211 11111222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH----H
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK----E 172 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~----~ 172 (311)
-...+...+|+++.|+|+++.-.......|..++.+.. .|-++|+||+|.+... ..+-+.+....+..+. +
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k-~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQK-RLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchhh-hHHhhhHHhccccccchhhhh
Confidence 22344567899999999984333334566777776643 3899999999987441 1111111111111111 1
Q ss_pred HHHhcC-Cc----------EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 021534 173 ILQLCD-NR----------CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAE 224 (311)
Q Consensus 173 ~~~~~~-~~----------~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~ 224 (311)
+-.... .+ ...|......||+.+.|+++|.+++....+. +.+.|+..+..+
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i~T~ 284 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADIVTE 284 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCcccccc
Confidence 111110 01 1123333448999999999999999987654 666676655443
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=133.60 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|||||||+|.+.+.. .... .+|.......+.+ .+..+.+|||||.. .+...+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~~~-~~~~~~i~D~~G~~-----------~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKLRL-DKYEVCIFDLGGGA-----------NFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEEEE-CCEEEEEEECCCcH-----------HHHHHHHHH
Confidence 48999999999999999999862 2221 1222233344555 77889999999943 244445667
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+..+|+++||+|++++.+..+ ..++..+..... ....|+++|+||+|+... ....+..... .+..+....+.+
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~~---~l~~~~~~~~~~ 137 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEYL---SLEKLVNENKSL 137 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHhc---CcccccCCCCce
Confidence 889999999999984432222 233333332111 124699999999997655 3333322220 122222222323
Q ss_pred EEEecCCchhhhhhH------HHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRT------EQVGKLLSLVNS 207 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~------~~i~~l~~~i~~ 207 (311)
++.+ .+||.++ .|+.+.++||..
T Consensus 138 ~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHIE----PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEE----EeEceeCCCCccccCHHHHHHHHhc
Confidence 3332 2566666 789999999853
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=131.52 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=98.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+++|.+|+|||||++++++...... ..+..+.......+.+ ++. .+.||||||. +.+.
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~-----------~~~~ 68 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQ-----------ERFR 68 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcC--cCCceeeEEEEEEEEE-CCeEEEEEEEeCCCh-----------HHHH
Confidence 3558999999999999999999998664221 1122222222233444 333 6789999993 2344
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.....++..+|++++|+|++++-+... ..+...+...... ....|+++|.||+|+.... .... .+..
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~---------~~~~ 138 (170)
T cd04116 69 SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTE---------EAQA 138 (170)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHH---------HHHH
Confidence 445556788999999999984433222 2344444443321 1235999999999976321 1111 1334
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+....+. .++. +|+.++.|+.+++..+.+
T Consensus 139 ~~~~~~~~~~~e------~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 139 WCRENGDYPYFE------TSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHHCCCCeEEE------EECCCCCCHHHHHHHHHh
Confidence 4444442 3333 688888999999988764
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=132.69 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++...... . .++........+.. ++. .+.||||||.... ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-Y--DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF-----------ASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-C--CCchhheEEEEEEE-CCEEEEEEEEECCCcccc-----------cchH
Confidence 7899999999999999999987764221 1 11111222233444 443 5789999996542 2223
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++++|+|++++-+-.+ ..++..+..... ....|+++|+||+|+... ..+... ....+....
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSA-------EGRALAEEW 136 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHH-------HHHHHHHHh
Confidence 334678899999999985433222 344455554432 134699999999997643 221110 012223333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +||.++.|+.+++.++.+.
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 137 GCPFME------TSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred CCEEEE------ecCCCCCCHHHHHHHHHHh
Confidence 444444 6888899999999988653
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=132.48 Aligned_cols=155 Identities=12% Similarity=0.062 Sum_probs=93.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|++++... .. ...|.......+.+ .+..+.+|||||... +...+..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VT----TIPTIGFNVETVEY-KNVSFTVWDVGGQDK-----------IRPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CC----CCCCcCcceEEEEE-CCEEEEEEECCCChh-----------hHHHHHHH
Confidence 589999999999999999998863 11 12233333444555 677899999999553 22333445
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH-HHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI-LQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 179 (311)
+..+|++++|+|++++-+... ...+..+..... ....|+++++||+|.... ....+.... +... ......
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~~ 135 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEKILGRRW 135 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhhccCCcE
Confidence 678899999999984322111 222222222111 123599999999998755 322222111 0000 000111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+++. .|+.++.|+.++++.|..
T Consensus 136 ~~~~------~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQP------CSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEE------eeCCCCCCHHHHHHHHhh
Confidence 2333 688888999999988753
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=132.14 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ-RTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||++++.+... +... .+|....+. .+.+ ++ ..+.||||||... +...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~---~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEY---VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQED-----------YDRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCC---CCceeeeeEEEEEE-CCEEEEEEEEECCCccc-----------hhhh
Confidence 6899999999999999999997653 2211 122222221 3334 44 4788999999654 2222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----CchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~~ 170 (311)
...++.++|++|+|+|++++-+-... .++..+....+ ..|+++|.||+|+... ..+.+.+.... ....
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 33457889999999999855443332 35555655432 3599999999997644 22222221100 1112
Q ss_pred HHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 171 KEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 171 ~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..+....+ ..++. +||.++.|++++++.+..
T Consensus 141 ~~~a~~~~~~~~~e------~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLKAVKYVE------CSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhCCcEEEE------ecCCCCCCHHHHHHHHHH
Confidence 23333334 34554 788999999999988765
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=136.90 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|++|||||||+|++.+.... .. .+|.......+.+ .+..+.+|||||... ....
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~---~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QH---VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--cc---CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 34589999999999999999999986541 11 1233333445556 678899999999432 2333
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCch--HHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELED-NDETLEDYLGRECPKP--LKE 172 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~--~~~ 172 (311)
+..++.++|+++||+|+++.-+-.. ....+...... ....|+++++||+|+... ....+..++....... ...
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~--~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQE--SKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHH--HHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccc
Confidence 4455788899999999984311111 11222222221 133699999999997643 1122222222100000 000
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+.......+. ...+||.++.|+.+++++|.+.
T Consensus 158 ~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 158 LKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence 0001111111 1247899999999999998764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-17 Score=134.18 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=98.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++....+. ..+..+.......+.+ ++ ..+.+|||||... +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 348999999999999999999998764222 1122222222223334 33 3678999999432 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++|+|+|++++-+... ..++..+..... ...|+++|.||+|+......... ....+..
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTE---------EGEQFAK 139 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHH---------HHHHHHH
Confidence 33445678999999999984333222 244444444332 23589999999997654111111 1223334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.++.+++.++...+
T Consensus 140 ~~~~~~~e------~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 EHGLIFME------ASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 44544444 67888899999988777554
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=142.36 Aligned_cols=168 Identities=23% Similarity=0.193 Sum_probs=118.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+.+.|+++|.||+|||||+|+|++...+. ......|-+.....+.+.+++.+.+.||-||.+ .-...+-..|.+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFks 264 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKS 264 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHH
Confidence 3577899999999999999999999988743 334556777777777775689999999999987 334455555665
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+.. ...+|+++.|+|++++.-... ......|.++--.+ .|+++|+||+|.+.+ ......+. .
T Consensus 265 TLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~-----------~ 328 (411)
T COG2262 265 TLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELE-----------R 328 (411)
T ss_pred HHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhh-----------h
Confidence 5544 357899999999996633333 34444555532222 699999999998866 22111111 1
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+ ..+ ..||.++.|++.|.+.|...+..
T Consensus 329 ~~~-~~v------~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 329 GSP-NPV------FISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCC-CeE------EEEeccCcCHHHHHHHHHHHhhh
Confidence 111 222 36999999999999999998864
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=133.80 Aligned_cols=162 Identities=17% Similarity=0.075 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||+|+|++.... ....+. ............ ....+.+|||||..... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPT--VFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc--eeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence 58999999999999999999987742 111111 111112222221 23478999999976421 1112
Q ss_pred hccCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh----hhcCCchHHHH
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL----GRECPKPLKEI 173 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~----~~~~~~~~~~~ 173 (311)
..+..+|++++|+|++++-+.. ...++..+....+ ..|+++|+||+|+... ....... ..........+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHHH
Confidence 2357789999999998433322 2344555554333 3699999999998765 2221100 00000112333
Q ss_pred HHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 174 LQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 174 ~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
....+. .++. .|+.++.|+.++++.|.+
T Consensus 142 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 142 AKEIGAIGYME------CSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHhCCeEEEE------eecCCCCCHHHHHHHHhh
Confidence 344343 4444 688888999999998764
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=134.69 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+++|.+|+|||||++++++.... .... .|....+ ..+.. ++ ..+.||||||... +...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~-~~~~---~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~-----------~~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFP-QVYE---PTVFENYVHDIFV-DGLHIELSLWDTAGQEE-----------FDRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CccC---CcceeeeEEEEEE-CCEEEEEEEEECCCChh-----------cccc
Confidence 37999999999999999999987642 1111 1221111 12223 33 4789999999543 2223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CCchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CPKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~~~~ 170 (311)
...++..+|++++|+|++++-+... ..++..+..... ..|+++|.||+|+... ....+..... .....
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 3345788999999999985543332 245666665432 3599999999998654 2222111100 00011
Q ss_pred HHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 171 ~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+....+ ..++. +||.++.|+++++.++.+.+.
T Consensus 140 ~~~~~~~~~~~~~e------~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 140 LAVAKRINALRYLE------CSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHHHHHcCCCEEEE------ccCCcCCCHHHHHHHHHHHHh
Confidence 23333333 23443 788999999999999987664
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=153.08 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=104.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC---------------CCCCcceeEEEEEEEee
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KA---------------GSSGVTKTCEMQRTMLK 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~---------------~~~~~T~~~~~~~~~~~ 67 (311)
..+.++|+++|++++|||||+|+|++...... +. ...|.|.......+.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 35679999999999999999999985432111 00 1367888888888888
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
++..+.||||||+.+.. ......+..+|++++|+|+++ .+...+...+..+.. .+. .|+++++
T Consensus 82 ~~~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence 88899999999975421 112223467899999999986 565556565555543 332 4799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|+.......+...... +..++..++. ++++ +||.++.|+.+
T Consensus 147 NK~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~~~~ii~------iSA~~g~gi~~ 195 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPDDIPFIP------VSAFEGDNVVK 195 (425)
T ss_pred EccccccccHHHHHHHHHH-----HHHHHHhhCCCcCcceEEE------eecccCCCccc
Confidence 9999875321223322222 4455554442 2333 67777788765
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=132.88 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ-RTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
.++|+++|.+|+|||||++++..... +... .+|....+. .+.+ ++ ..+.||||||-.. +..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~ 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF-PKEY---IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDR 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-CcCC---CCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 38999999999999999999987653 2211 122222111 2233 33 3788999999432 444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCchH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPL 170 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~~ 170 (311)
....+++++|++|+|+|++++-+-... .++..+..... ..|+++|.||.|+.... ......... ......
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 142 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQG 142 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHH
Confidence 455568899999999999855443332 24444544332 35999999999975431 111111110 001123
Q ss_pred HHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+. .++. +||.++.|+++++..+.+.+
T Consensus 143 ~~~a~~~~~~~~~e------~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 143 GALAKQIHAVKYLE------CSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHHHHcCCcEEEE------eCCCCCCCHHHHHHHHHHHH
Confidence 344444442 4444 78889999999999998765
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=130.72 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||+|+|.|..... ..|..+ .+ ... .+|||||++... ......+ ...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v-----~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAV-----EF-NDK--GDIDTPGEYFSH---PRWYHAL----ITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------ccceEE-----EE-CCC--CcccCCccccCC---HHHHHHH----HHH
Confidence 79999999999999999999865311 112221 22 222 279999986532 1122222 233
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC--
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-- 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 179 (311)
+.++|++++|+|++...+..... +.... ...|+++++||+|+... .... +..++...+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~~----~~~~~---~~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~~ 122 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPAG----LLDIG---VSKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFEE 122 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCHH----HHhcc---CCCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCCC
Confidence 67889999999998443332222 22211 13589999999997533 1111 2333333342
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+++. +|+.++.|+++|++.+.+.+.
T Consensus 123 p~~~------~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 123 PIFE------LNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred CEEE------EECCCccCHHHHHHHHHHhch
Confidence 5555 788999999999999988764
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=153.20 Aligned_cols=161 Identities=21% Similarity=0.286 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc--ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA--FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~--~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|++|+|||||+|+|+|... ++. ....+.|..+.+..+.+ ++..+.+|||||+. .+...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHH
Confidence 3799999999999999999998542 111 12357788887777777 67899999999943 244444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+.++|++++|+|++++........+..+.. .+. .++++|+||+|+.+. ..+...... +..++...+
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~ 136 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYI 136 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhC
Confidence 555778999999999987666666666665543 332 249999999998765 433332222 444444332
Q ss_pred ----CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 ----NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ----~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.++++ +|+.++.|+.++...|..++..
T Consensus 137 ~~~~~~ii~------vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 137 FLKNAKIFK------TSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCcEEE------EeCCCCCCchhHHHHHHHHHHh
Confidence 33444 7888999999999998887654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-17 Score=130.40 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+..++|+++|.+|+|||||++++.+... +... .+|....+ ..+.+ ++ ..+.||||+|-. .+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f-~~~~---~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e-----------~~ 66 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCF-PENY---VPTVFENYTASFEI-DTQRIELSLWDTSGSP-----------YY 66 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCC-CCcc---CCceeeeeEEEEEE-CCEEEEEEEEECCCch-----------hh
Confidence 4568999999999999999999987654 2211 11222111 22333 33 378999999943 23
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCc
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPK 168 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~ 168 (311)
......+++++|++|+|+|++++-+-.. ..++..+.+..+ ..|+++|.||+|+.... ..+.+.... -...
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~ 142 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYD 142 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHH
Confidence 4444556889999999999986544443 356666766543 25999999999975321 111100000 0112
Q ss_pred hHHHHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHH
Q 021534 169 PLKEILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSV 208 (311)
Q Consensus 169 ~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~ 208 (311)
....+....+. .++. +||+++.+ +++++..+...
T Consensus 143 ~~~~~a~~~~~~~~~E------~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 143 QGANMAKQIGAATYIE------CSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHHcCCCEEEE------CCcCCCCCCHHHHHHHHHHH
Confidence 24556666664 5554 79999998 99999887663
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-17 Score=128.24 Aligned_cols=158 Identities=19% Similarity=0.149 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++.... ... .+.+.......... ++ ..+.+|||||..+ +....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~-----------~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEDVQLNILDTAGQED-----------YAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-ccc--CCcchhhEEEEEEE-CCEEEEEEEEECCChhh-----------hhHHH
Confidence 48999999999999999999976542 111 11111111122223 33 4789999999543 22333
Q ss_pred HhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+..+|++++|+|++++-+.. -..++..+..... ....|+++|+||+|........... ...+...+
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence 34567889999999987432211 1233344444321 2346999999999987521011111 22333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +|+.++.|+.+++..+.+.+
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 136 GVPYVE------TSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCeEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 555554 78899999999999987655
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=133.66 Aligned_cols=169 Identities=15% Similarity=0.034 Sum_probs=106.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
+.....+|+++|.+|+|||||++++++... +.... +|....+ ..+.. ++ ..+.||||||-..
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~---pTi~~~~~~~i~~-~~~~v~l~iwDTaG~e~---------- 73 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYV---PTVFENYTAGLET-EEQRVELSLWDTSGSPY---------- 73 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcC---CceeeeeEEEEEE-CCEEEEEEEEeCCCchh----------
Confidence 445668999999999999999999987754 22111 1221111 12333 33 4789999999432
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh----hcC
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----REC 166 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~----~~~ 166 (311)
+......++.++|++|+|+|++++-+-.. ..|+..+....+ ..|+++|.||+|+.... ..+.+... ...
T Consensus 74 -~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs 148 (232)
T cd04174 74 -YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDL-STLMELSNQKQAPIS 148 (232)
T ss_pred -hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccccc-chhhhhccccCCcCC
Confidence 33444556889999999999985554433 356666666543 25899999999975321 11110000 001
Q ss_pred CchHHHHHHhcCC-cEEEecCCchhhhhhHH-HHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDN-RCVLFDNKTKDAAKRTE-QVGKLLSLVNSVIV 210 (311)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~~ 210 (311)
......+....+. .++. +||.++. ++++++..+.....
T Consensus 149 ~~e~~~~a~~~~~~~~~E------tSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 149 YEQGCALAKQLGAEVYLE------CSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHHHHHHHHcCCCEEEE------ccCCcCCcCHHHHHHHHHHHHH
Confidence 1124556666665 3544 7888887 79999998876653
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-17 Score=152.94 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|++|+|||||+++|.+.... .....+.|.....+.+.+.++..++||||||+.++ ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~--~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA--QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc--cccCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 4589999999999999999999987652 22345677777777777733348999999997653 2233
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++++|+|+++.........+..+.. . ..|+++++||+|+.......+...+.. ..-....++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~----~vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-A----NVPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-c----CCCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 345678899999999987666666666554433 2 248999999999764321223222221 111112222
Q ss_pred C--cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 N--RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 ~--~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
. ++++ +||.++.|+++|+++|..
T Consensus 223 ~~~~~v~------iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTIFVP------VSALTGDGIDELLDMILL 247 (587)
T ss_pred CCceEEE------EECCCCCChHHHHHhhhh
Confidence 2 2333 789999999999998864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=158.32 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|++|+|||||+++|.+..+ ......+.|.....+.+.+ ++..++||||||+.++ ....
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v--~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F-----------~~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV--AAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEAF-----------TAMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc--cccccCceeeeccEEEEEE-CCEEEEEEECCCCccc-----------hhHH
Confidence 458999999999999999999988665 2223456777777788888 7889999999998764 2222
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++|+|+|++++........+..+.. . ..|+|+++||+|+.......+...+.. ...+...++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~----~vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-A----GVPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-c----CCcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 334567899999999987776666666655443 2 248999999999854311122211111 011122223
Q ss_pred --CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 --NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 --~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++++ +||.++.|+.+|+++|..
T Consensus 425 ~~vp~vp------vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDTIFVP------VSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCceEEE------EeCCCCCCchHHHHhhhh
Confidence 23333 788999999999999874
|
|
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=131.16 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++++... ... ..+++.......+.+ ++. .+.+|||||...... . ...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~----~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGE-YDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT------E----QLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccc-cCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc------c----hHH
Confidence 589999999999999999987543 111 111111111222333 443 578999999763100 0 111
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|++|+|+|++++-+-.. ..++..+..........|+++|.||+|+... ..+... ....+....+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~~ 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASELG 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHcC
Confidence 23556899999999985433332 3445555554321234699999999997543 211110 1223334445
Q ss_pred CcEEEecCCchhhhhhH-HHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRT-EQVGKLLSLVNSVI 209 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~-~~i~~l~~~i~~~~ 209 (311)
..++. +|+.++ .|+.+++..+.+.+
T Consensus 138 ~~~~e------~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFFE------VSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CEEEE------eCCCCCchhHHHHHHHHHHHH
Confidence 55544 677777 58999999987654
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-17 Score=122.07 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=119.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+++|+++|..|+||||+++.+.|.+. ....+|...+.....+ ++..+.+||..| +..++.+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGG-----------q~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGG-----------QKTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCC-----------cchhHHHH
Confidence 469999999999999999999999874 3445677888888888 899999999999 45588899
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+|+...|++|||+|.+++..-.+ ....++++.... +..|++++.||.|.... ..+.+... ..+..+.+
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~------~~L~~l~k 149 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKA------LDLEELAK 149 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHh------hCHHHhcc
Confidence 999999999999999986655444 223333333221 33599999999997644 11233222 22677777
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..+.+. +++.++.++.+-++++..-+
T Consensus 150 s~~~~l~~------cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 150 SHHWRLVK------CSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ccCceEEE------EeccccccHHHHHHHHHHHH
Confidence 77777766 67778888888888877654
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-17 Score=153.14 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=114.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.|+++|++++|||||+++|+|.+.-.. .....+.|....+..+...++..+.||||||+.+ +......
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 689999999999999999998542111 1122477887776666554567899999999532 3333444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC--
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-- 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 178 (311)
.+.++|++++|+|+++++.+.+.+.+..+.. .+. .++++|+||+|+.+. ..+...... +..++...+
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4678899999999997788888777776654 332 247899999998754 444443333 455554433
Q ss_pred -CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 -NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 -~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.++++ +|+.++.|++.|++.|..+...
T Consensus 140 ~~~ii~------VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 EAKLFV------TAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCcEEE------EeCCCCCCCHHHHHHHHHhhcc
Confidence 33444 7888999999999999887643
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-17 Score=130.24 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+.++++... +....+ +........+.. ++ ..+.||||||... +....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP--TVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------YDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC--cceeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhhh
Confidence 6899999999999999999987653 221111 111111112333 33 4788999999543 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCchHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKE 172 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~~~~ 172 (311)
..++.++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|+.... ...+..... ........
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence 445788999999999985444333 235555555432 35999999999975431 111111110 01112334
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+....+. .++. +||.++.|++++++.+.+
T Consensus 143 ~~~~~~~~~~~e------~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 143 MAKEIGAVKYLE------CSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHcCCcEEEE------ecccccCCHHHHHHHHHH
Confidence 4444443 4443 789999999999988764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=131.52 Aligned_cols=162 Identities=17% Similarity=0.091 Sum_probs=98.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
|+|+|.+|+|||||++++++... +....+ . ........+.. ++. .+.+|||||.... ......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~-~-~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVP-T-VFENYSADVEV-DGKPVELGLWDTAGQEDY-----------DRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCC-c-EEeeeeEEEEE-CCEEEEEEEEECCCCccc-----------chhchh
Confidence 58999999999999999998764 221111 1 11111223333 343 6899999995532 222334
Q ss_pred ccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCchHHHHH
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKEIL 174 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (311)
++.++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|+.... .....+... ........+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence 5778999999999985433322 235555555432 36999999999986531 112111110 0011123455
Q ss_pred HhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+. .++. +|+.++.|++++++.+.+.+
T Consensus 142 ~~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 142 KRIGAVKYLE------CSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHcCCcEEEE------ecCCCCCCHHHHHHHHHHHh
Confidence 55453 4444 78899999999999887643
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=127.44 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=121.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+.+..++|+++|.+|+|||+++-.+..... ..........+.....+.+ ++. .+.+|||.| +++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f--~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaG-----------Qer 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSF--NTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAG-----------QER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccC--cCCccceEEEEEEEEEEEe-CCeEEEEEEEEccc-----------chh
Confidence 445669999999999999999998886654 2122223445555566666 554 789999999 466
Q ss_pred HHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+......++++++++++|+|+++. -..+...|++.+.++...+ .|.++|.||+|+... ..+.. ..-..
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~--R~V~~-------e~ge~ 142 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEK--RQVSK-------ERGEA 142 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeecccccccc--ccccH-------HHHHH
Confidence 777777889999999999999843 3334467899999877654 489999999997764 33321 12356
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....|..++. +||+++.++.+.+-.+...+.
T Consensus 143 lA~e~G~~F~E------tSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 143 LAREYGIKFFE------TSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHhCCeEEE------ccccCCCCHHHHHHHHHHHHH
Confidence 67777888887 899999999999888776554
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=132.50 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++++.... ... ..++.......+.+ .+ ..+.||||||.... .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKY--RRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccC--CCchhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHHH
Confidence 5899999999999999999987642 111 11111222233444 44 47889999996542 22233
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH-hc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-LC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 177 (311)
.++..+|++|||+|++++.+-.. ..++..+.+.... ...|+++|+||+|..... ..+... . ...... .+
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~-~~v~~~-~------~~~~~~~~~ 136 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEE-RQVPAK-D------ALSTVELDW 136 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccccc-ccccHH-H------HHHHHHhhc
Confidence 45778999999999985433332 2333444443322 346999999999986531 111110 0 111111 22
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..++. +|+.++.|+.++++++.+.+.
T Consensus 137 ~~~~~~------~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVE------TSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEE------ecCCCCCCHHHHHHHHHHHhh
Confidence 334443 788999999999999987664
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=128.47 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=110.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+-++....+-....+..|. ......+.. ++ ..+.||||.|. +++.+.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGa--aF~tktv~~-~~~~ikfeIWDTAGQ-----------ERy~sl 70 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGA--AFLTKTVTV-DDNTIKFEIWDTAGQ-----------ERYHSL 70 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcccccccccccc--EEEEEEEEe-CCcEEEEEEEEcCCc-----------cccccc
Confidence 489999999999999999888765542111222221 122222233 33 36779999993 446667
Q ss_pred HHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++++++++|+|+|+++.-+-. .+.|++.|++..+++. .+.+|.||+|+... ..+. -.....+.+.
T Consensus 71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~--R~V~-------~~ea~~yAe~ 139 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLER--REVE-------FEEAQAYAES 139 (200)
T ss_pred ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhc--cccc-------HHHHHHHHHh
Confidence 778899999999999999443322 3677777777666432 46679999998864 2221 1113455555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
.|..++. +||+++.|+++++..|.+.++..
T Consensus 140 ~gll~~E------TSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 140 QGLLFFE------TSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred cCCEEEE------EecccccCHHHHHHHHHHhccCc
Confidence 5666665 89999999999999999887653
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=129.24 Aligned_cols=162 Identities=15% Similarity=0.036 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+++|.+|+|||||++++.+... +.... +|.... ...+.+ ++ ..+.||||||... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~---~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYV---PTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcC---CceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 6899999999999999999998753 22211 122111 123333 33 3788999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh----hcCCchHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKPLK 171 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~----~~~~~~~~ 171 (311)
...+++++|++|+|+|++++-+-.. ..++..+.+..+ ..|+++|.||+|+.... ..+.+.-. .-......
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3456889999999999985554443 356666766553 25899999999975321 11110000 00111234
Q ss_pred HHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHH
Q 021534 172 EILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~ 208 (311)
.+....+. .++. +||.++.+ +++++..+...
T Consensus 142 ~~a~~~~~~~~~E------~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGAEIYLE------CSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCCCEEEE------CccCcCCcCHHHHHHHHHHH
Confidence 55555554 3444 78888885 99999887763
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-17 Score=134.44 Aligned_cols=160 Identities=18% Similarity=0.080 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||++++++.........+.+. .......+.+. ....+.+|||||... .+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~~-- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM----------WTEDS-- 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch----------HHHhH--
Confidence 47999999999999999999765542111111111 11222223331 335789999999651 01111
Q ss_pred hccC-CccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKD-GIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~-~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
++. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+... ....+....
T Consensus 68 -~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~--~~v~~~-------~~~~~a~~~ 136 (221)
T cd04148 68 -CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARS--REVSVQ-------EGRACAVVF 136 (221)
T ss_pred -HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhcccc--ceecHH-------HHHHHHHHc
Confidence 233 7899999999985433222 344555554321 134699999999998654 222111 012233334
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..++. +||.++.|++++++.+...+.
T Consensus 137 ~~~~~e------~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIE------TSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 555554 788899999999999987774
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=127.07 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=96.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|++|+|||||+|++++... .... .+.+.......+.. .+ ..+.+|||||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY--DPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc--CCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999998763 2222 22222333333333 32 4788999999543 222333
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..+..+|++++|+|.+++-+..+ ..++..+....+. ...|+++++||+|.........+ ....+....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKE---------EGKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHH---------HHHHHHHHcC
Confidence 44667899999999984332222 3444445544431 23699999999998753111111 1233334444
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+++. .|+.++.|+.++++.|.+
T Consensus 136 ~~~~~------~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 136 CPFIE------TSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CcEEE------eccCCCCCHHHHHHHHHh
Confidence 44444 678888999999998865
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=128.48 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||+|++++... . ...|.. +.+ .. .+|||||.... .......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~----~~~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--L----YKKTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--c----ccccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 799999999999999999998763 1 112221 222 22 58999996321 11112222234
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-c
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-R 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (311)
++++|++++|+|++++.+..+..++. ..+ .|+++|+||+|+.+.. ...+. ...++...+. +
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~~---------~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIER---------AKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHHH---------HHHHHHHcCCCc
Confidence 78899999999998665544433322 222 3899999999976431 11111 2233333343 3
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
++. +|+.++.|++++++++.
T Consensus 122 ~~~------~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFE------ISSVDEQGLEALVDYLN 141 (142)
T ss_pred EEE------EecCCCCCHHHHHHHHh
Confidence 444 68888999999998863
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-17 Score=128.67 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++...... ..+ ++...-...+.+ ++ ..+.+|||||.... ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES-YDP--TIEDSYRKQVEI-DGRQCDLEILDTAGTEQF-----------TAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCC--cchheEEEEEEE-CCEEEEEEEEeCCCcccc-----------hhhh
Confidence 6899999999999999999997764221 111 111111222333 33 47789999996642 2233
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..++++++|+|++++-+-.. ..+...+...... ...|++++.||+|..........+ ...+....
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence 344667899999999984322222 3344444443322 346999999999976441111111 12233333
Q ss_pred C-CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 D-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+ .+++. +||.++.|+.+++.++...
T Consensus 137 ~~~~~~~------~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GNVPFYE------TSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CCceEEE------eeCCCCCCHHHHHHHHHHH
Confidence 4 34444 7888899999999998753
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=133.65 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|+|+|... .....+++|.......+.+ .+..+.+|||||+.+....... +...+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~----~~~~~l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKG----RGRQVIAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchh----HHHHHHHh
Confidence 689999999999999999999764 2234456676666666667 8889999999998753321111 22222334
Q ss_pred cCCccEEEEEEECCC
Q 021534 102 KDGIHAVLLVFSIRN 116 (311)
Q Consensus 102 ~~~~d~il~v~d~~~ 116 (311)
++.+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 778899999999873
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=130.03 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=92.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
|+++|++|||||||+|+|.+..... .. .+|.......+.. ++..+.+|||||... +...+..++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~--~~--~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE--DT--IPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc--Cc--cCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 7999999999999999999986421 11 2233333344444 567899999999542 333444557
Q ss_pred CCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
..+|++++|+|++...+... ...+..+..... ....|+++|+||+|.... ........... +... .....++
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~---~~~~-~~~~~~~ 138 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA--LSVDELIEQMN---LKSI-TDREVSC 138 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--cCHHHHHHHhC---cccc-cCCceEE
Confidence 78899999999983221111 122222221110 123599999999997654 33322221100 0000 0001122
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+ ..|+.++.|+.+++++|.+
T Consensus 139 ~------~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 139 Y------SISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred E------EEEeccCCChHHHHHHHhh
Confidence 3 2678888999999998864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=129.18 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||++++++... +... .+.+.......+.+ .+ ..+.+|||||..+ +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESY--YPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cccc--CcchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHHH
Confidence 6899999999999999999998764 1111 11121111222333 33 3578999999653 22233
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..++..+.+..+. ...|+++|.||+|+... ..+... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence 344667899999999984332222 2333344433322 23589999999997643 211110 122333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
+.+++. +|+.++.|+.+++.++.+.+...
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 137 GAAFLE------SSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 444444 67888899999999998776543
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=125.30 Aligned_cols=162 Identities=23% Similarity=0.217 Sum_probs=100.9
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDG 104 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (311)
++|++|+|||||+|+|++...... ....+.|.........+..+..+.+|||||+.+........ ...+...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~----~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV-SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER----EELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc-CCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH----HHHHHHHHHh
Confidence 589999999999999999875322 23345565665555555237799999999998764433211 1122233567
Q ss_pred ccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 105 IHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 105 ~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
+|+++||+|++.........+...... ...|+++|+||+|.... ..+...... ...........+++.
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~- 143 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVIA- 143 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceEE-
Confidence 899999999985555444432222221 23589999999998866 444332210 001111112334444
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.|+.++.|+.++++++.+.
T Consensus 144 -----~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 -----VSALTGEGIDELREALIEA 162 (163)
T ss_pred -----EeeeccCCHHHHHHHHHhh
Confidence 5667778999999988754
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=128.17 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+++|.+|+|||||++++++....+.. ..+..........+.+ ++ ..+.+|||+|-... ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~-----------~~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNA-YSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVA-----------IL 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCccc-CCCccCcceEEEEEEE-CCeEEEEEEEecCCcccc-----------cc
Confidence 4589999999999999999999987742011 1122222222333444 44 46889999995542 12
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....++..+|++|+|+|++++-+-. .+..++.... .....|+++|+||+|+... .... .. ....+...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~~-~~~~~p~iiv~NK~Dl~~~--~~~~--~~-----~~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFS--YCAEVYKKYF-MLGEIPCLFVAAKADLDEQ--QQRY--EV-----QPDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHhc-cCCCCeEEEEEEccccccc--cccc--cc-----CHHHHHHH
Confidence 2233467899999999997442211 1222333221 1123699999999997543 1110 00 12233333
Q ss_pred cCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+. .++. +||.++.|++++++.+.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 LGLPPPLH------FSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred cCCCCCEE------EEeccCccHHHHHHHHHHHh
Confidence 333 2233 68888899999999988765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-17 Score=153.34 Aligned_cols=163 Identities=16% Similarity=0.220 Sum_probs=108.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
...++|+|+|++|+|||||+++|++.... .....+.|.....+.+.+. .+..++||||||+.+ +
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~--~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA--QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------F 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc--cccCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------H
Confidence 35689999999999999999999987652 2223455655555555442 247899999999543 4
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...+...+..+|++|+|+|++++........+..+.. ...|+++++||+|........+...+.. ...+.
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~ 378 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKANANTERIKQQLAK-----YNLIP 378 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCccccCHHHHHHHHHH-----hccch
Confidence 4444455677899999999987776666666665543 2359999999999764321222222211 00011
Q ss_pred HhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++ .++++ +||.++.|+.+|++.|..+.
T Consensus 379 e~~g~~vpvv~------VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 379 EKWGGDTPMIP------ISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HhhCCCceEEE------EECCCCCCHHHHHHhhhhhh
Confidence 2223 23333 78899999999999987653
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=132.62 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=106.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|..||||||+++.|....... ..+|.......+.+ .+..+.+||.+|-. .+...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~-----------~~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQE-----------SFRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSG-----------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccc-----------ccccc
Confidence 567999999999999999999998765321 33456666777777 88999999999932 25556
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~ 174 (311)
+..++.++|++|||+|+++.-.-. +....|..++... ...|+++++||.|.... ....+...+.. ..+.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~--e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~ 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQ--EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHH--HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT
T ss_pred ceeeccccceeEEEEecccceeec--ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc
Confidence 777889999999999998332211 1222333333321 23699999999997654 11223332221 1111
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
...++..+ .+|+.++.|+.+.++||.+.
T Consensus 147 --~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 --NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp --SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred --cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 12334332 36778889999999999764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=128.12 Aligned_cols=164 Identities=17% Similarity=0.095 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||+.+++.... ..... .|.... ...+.. ++ ..+.||||+|... +...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~---~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~-----------~~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYI---PTVFDNFSANVSV-DGNTVNLGLWDTAGQED-----------YNRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCC---CcceeeeEEEEEE-CCEEEEEEEEECCCCcc-----------cccc
Confidence 5899999999999999999997664 22221 122111 122333 33 4789999999654 2223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH-hhhcCCchHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY-LGRECPKPLKEIL 174 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (311)
...+++++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|+.+......... ...-.......+.
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 3445789999999999986655444 346666665443 359999999999854310000000 0000011234444
Q ss_pred HhcCCc-EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+.. ++. +||.++.++++++..+.+.+
T Consensus 143 ~~~~~~~~~E------~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGAAAYIE------CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCCCEEEE------CCCCcccCHHHHHHHHHHHH
Confidence 554542 443 78899999999999988765
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=143.71 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=96.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+.++|+++|++++|||||+|+|++...... .....+.|.......+.+ ++..+.++||||+.
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~ 86 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA 86 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH
Confidence 355679999999999999999999997532110 011256677766666666 77889999999954
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~ 160 (311)
+ +...+...+..+|++++|+|+...+...+...+..+.. .+ .| +|+++||+|+... ....+
T Consensus 87 ~-----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~-~g----~~~iIvvvNK~D~~~~--~~~~~ 148 (409)
T CHL00071 87 D-----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ-VG----VPNIVVFLNKEDQVDD--EELLE 148 (409)
T ss_pred H-----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC----CCEEEEEEEccCCCCH--HHHHH
Confidence 2 33333344567899999999987788888777776654 33 35 7889999998754 33333
Q ss_pred HhhhcCCchHHHHHHhcC
Q 021534 161 YLGRECPKPLKEILQLCD 178 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (311)
.+.. .+..++..++
T Consensus 149 ~~~~----~l~~~l~~~~ 162 (409)
T CHL00071 149 LVEL----EVRELLSKYD 162 (409)
T ss_pred HHHH----HHHHHHHHhC
Confidence 3221 2556666544
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=127.97 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+++|++|||||||++++.+.... ....+ |.... ...+.+ ++. .+.+|||||..+ +...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVP---TVFENYVADIEV-DGKQVELALWDTAGQED-----------YDRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCC---ccccceEEEEEE-CCEEEEEEEEeCCCchh-----------hhhc
Confidence 68999999999999999999986542 11111 11111 223333 333 688999999643 2222
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----CchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~~ 170 (311)
....+.++|++++|+|++++-+-.. ..++..+....+ ..|+++|.||+|+... ......+.... ....
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 2335678999999999984422222 234444544322 3599999999997644 22211111100 0112
Q ss_pred HHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 171 ~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+....+. .++. +||.++.|+++++.+|.+.
T Consensus 141 ~~~~~~~~~~~~~~------~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGYME------CSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEEEE------eccccCcCHHHHHHHHHHH
Confidence 233333332 3333 7889999999999998754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=127.85 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||++++++.... ....+ .........+.+ ++. .+.+|||||..+.. ...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVP--TVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------RLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCC--ceeeeeEEEEEE-CCEEEEEEEEeCCCccccc-----------ccc
Confidence 48999999999999999999987642 11111 111111223333 443 57799999965532 122
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----CchHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPLK 171 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~ 171 (311)
..++..+|++++|+|++++-+..+ ..++..+... . ...|+++|+||+|+.+. ......+.... .....
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence 334778999999999985433322 2345555543 2 33699999999997644 21111111000 01123
Q ss_pred HHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+....+. .++. +||.++.|++++++.+...
T Consensus 141 ~~~~~~~~~~~~e------~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCYVE------CSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEEEE------ecCCcCCCHHHHHHHHHHH
Confidence 33344443 3333 7889999999999987654
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=130.42 Aligned_cols=151 Identities=14% Similarity=0.016 Sum_probs=97.5
Q ss_pred EcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE--EEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 26 VGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM--QRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 26 ~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~--~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
+|.+|||||||++++++... .... ..|..... ..+.+. ....+.||||||... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKY---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCC---CCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 69999999999999986553 2211 22332222 223331 234899999999433 444455568
Q ss_pred CCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
.++|++|+|+|++++.+... ..++..+.+.+. ..|+++|.||+|+... ....+. ..+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~--~v~~~~---------~~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKDR--KVKAKS---------ITFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cCCHHH---------HHHHHHcCCEE
Confidence 89999999999985544433 345666666542 3599999999997532 111111 12233334444
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+. +||.++.|+.+++.+|...+..
T Consensus 132 ~e------~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 132 YD------ISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 44 7889999999999999876643
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=133.87 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||++++++... +... .+++.......+.+ ++ ..+.||||||..+ +....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~~y--~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~-----------~~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EEQY--TPTIEDFHRKLYSI-RGEVYQLDILDTSGNHP-----------FPAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CCCC--CCChhHhEEEEEEE-CCEEEEEEEEECCCChh-----------hhHHH
Confidence 4799999999999999999987654 2211 11111222223334 44 4788999999654 22222
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHh-------CCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLF-------GKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
..++..+|++|+|+|++++-+-.. ..++..+.... ......|+++|+||+|+........++ +
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------i 136 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------V 136 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------H
Confidence 334668899999999985433222 23444444321 112346999999999986431111111 2
Q ss_pred HHHHHh-cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQL-CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~-~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++.. .+..++. +||.++.|++++++.|..+.
T Consensus 137 ~~~~~~~~~~~~~e------vSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 137 EQLVGGDENCAYFE------VSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHhcCCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 333322 1233444 78889999999999998865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=127.41 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++... .... .+++.......+.. ++ ..+.+|||||... +....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEY--VPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDE-----------FDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCC--CCceeeeeeEEEEE-CCEEEEEEEEECCCChh-----------hcccc
Confidence 4799999999999999999987653 2222 12222222223333 33 3778999999643 22223
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc----CCchHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPKPLKE 172 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~~~~ 172 (311)
..++.++|++|+|+|++++-+-.. ..++..+..... ..|+++|.||+|+.... ..+....... .......
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 445788999999999985543332 345555554322 35999999999986431 1111110000 0011233
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+....+. .++. +||.++.|++++++.+.
T Consensus 142 ~a~~~~~~~~~e------~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGACEYIE------CSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHhCCCeEEE------EeCCCCCCHHHHHHHHH
Confidence 4444444 4444 78899999999998763
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=141.05 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=106.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCc------cc------c--ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKK------AF------M--SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~------~~------~--~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|++++|||||+++|++.. .+ . ......+.|..+....+.+ ++..+.|+||||+.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~- 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA- 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH-
Confidence 3566999999999999999999999621 00 0 0011356777776666666 67789999999953
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHH
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~ 161 (311)
.+..........+|++++|+|+.......+...+..+.. .+ .| +++++||+|+... ....+.
T Consensus 87 ----------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~g----i~~iivvvNK~Dl~~~--~~~~~~ 149 (396)
T PRK12735 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG----VPYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred ----------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEEEecCCcch--HHHHHH
Confidence 233334445668899999999986677777666666553 33 35 4568999998753 332222
Q ss_pred hhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhH----------HHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRT----------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~----------~~i~~l~~~i~~~~~ 210 (311)
+.. .+..++..++. ++++ .|+.++ .++..|++.|...++
T Consensus 150 ~~~----ei~~~l~~~~~~~~~~~ii~------~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 150 VEM----EVRELLSKYDFPGDDTPIIR------GSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHH----HHHHHHHHcCCCcCceeEEe------cchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 221 24555555432 2232 444443 357888888887653
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-16 Score=129.04 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+|+|.+|+|||||++++++... +....+ |....+ ..+.+ ++ ..+.||||+|-.. +...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p---Ti~~~~~~~~~~-~~~~v~L~iwDt~G~e~-----------~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVP---TVFENYTASFEI-DKRRIELNMWDTSGSSY-----------YDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCC---ccccceEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 6899999999999999999998663 222211 211111 12333 33 3788999999432 3334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc----CCchHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPKPLK 171 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~~~ 171 (311)
...+++++|++|+|+|++++-+-.. ..+...+...+. ..|+++|.||+|+.... ..+....... ....-.
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~---~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP---NAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 4456899999999999985533333 233334444332 35999999999976431 1111110000 011233
Q ss_pred HHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHHH
Q 021534 172 EILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSVI 209 (311)
Q Consensus 172 ~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~~ 209 (311)
.+....+. .|+. +||.++.+ +.+++.......
T Consensus 142 ~~ak~~~~~~y~E------~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 142 VLAKQVGAVSYVE------CSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHHHHcCCCEEEE------cCCCcCCcCHHHHHHHHHHHH
Confidence 45555554 4554 68877664 999998776643
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=148.71 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=105.5
Q ss_pred cCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCcc
Q 021534 27 GRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIH 106 (311)
Q Consensus 27 G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (311)
|.+|+|||||+|+|+|... ...+.+++|.+.....+.+ ++..+.+|||||.++...... .+.+.... .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8999999999999999875 3445678888888777777 788899999999887543221 12222211 1235789
Q ss_pred EEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecC
Q 021534 107 AVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 186 (311)
Q Consensus 107 ~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 186 (311)
++++|+|++ .+... ......+.+ ...|+++|+||+|..+. ..+.. +...+....+.++++
T Consensus 75 vvI~VvDat-~ler~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~~--~~i~~--------d~~~L~~~lg~pvv~--- 134 (591)
T TIGR00437 75 LVVNVVDAS-NLERN-LYLTLQLLE-----LGIPMILALNLVDEAEK--KGIRI--------DEEKLEERLGVPVVP--- 134 (591)
T ss_pred EEEEEecCC-cchhh-HHHHHHHHh-----cCCCEEEEEehhHHHHh--CCChh--------hHHHHHHHcCCCEEE---
Confidence 999999998 44332 222222322 23599999999997644 22111 123444555666666
Q ss_pred CchhhhhhHHHHHHHHHHHHHHH
Q 021534 187 KTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 187 ~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+|+.++.|++++++.+.+..
T Consensus 135 ---tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 ---TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---EECCCCCCHHHHHHHHHHHh
Confidence 78889999999999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-16 Score=120.07 Aligned_cols=167 Identities=13% Similarity=0.129 Sum_probs=106.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|.++|.+|+|||||+|.+........ .......+.....+.+ +++ .+.||||.| ++++.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~q--ykaTIgadFltKev~V-d~~~vtlQiWDTAG-----------QERFq 72 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQ--YKATIGADFLTKEVQV-DDRSVTLQIWDTAG-----------QERFQ 72 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHH--hccccchhheeeEEEE-cCeEEEEEEEeccc-----------HHHhh
Confidence 3459999999999999999999998765211 1111222222223333 333 788999999 56677
Q ss_pred HHHHhccCCccEEEEEEECCCC--CChhHHHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNR--FSKEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+.-..+++++|++++|+|++++ +...+.+--+++...-..+ ..-|+|++.||+|.-......+... ..+.
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~-------~Aq~ 145 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK-------KAQT 145 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHH-------HHHH
Confidence 7667789999999999998743 3333433334444433332 2348999999999654321222211 1344
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++..-|. +|+. +||+...++.+.+..+....-.
T Consensus 146 WC~s~gnipyfE------tSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 146 WCKSKGNIPYFE------TSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HHHhcCCceeEE------ecccccccHHHHHHHHHHHHHh
Confidence 4444343 3333 7888889999999888765543
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=132.79 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK----------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+|+++|++|+|||||+++|++....... ....+.|.......+.+ .+..+.+|||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 5899999999999999999864321110 01124455666677778 8899999999998763
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+..++..+|++++|+|++.+.......++..+.+ .+ .|+++++||+|....
T Consensus 78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~----~P~iivvNK~D~~~a 131 (237)
T cd04168 78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK-LN----IPTIIFVNKIDRAGA 131 (237)
T ss_pred ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccccCC
Confidence 2222334566799999999987777666666666654 22 489999999997644
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-16 Score=139.00 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=110.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFM--------------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|+.++|||||+++|++...-. ......+.|..+....+.. ++..+.+|||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 4567999999999999999999998732100 0001346777776666655 677899999999542
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHH
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~ 161 (311)
+..........+|++++|+|+.......+...+..+... | .| +++++||+|+.+. ..+.+.
T Consensus 88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~~--~~~~~~ 149 (394)
T PRK12736 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-G----VPYLVVFLNKVDLVDD--EELLEL 149 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcch--HHHHHH
Confidence 333333345678999999999877777777777776653 3 35 7889999998754 333332
Q ss_pred hhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhH--------HHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRT--------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~--------~~i~~l~~~i~~~~~ 210 (311)
+.. .+..++...+. ++++ .|+.++ .++..|++.+.+.++
T Consensus 150 i~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 150 VEM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 221 25555555442 3444 455554 367888888887764
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=135.22 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMS----------------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+|+++|++|+|||||+|+|+....... .....+.|.......+.| .+..+.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 589999999999999999974221000 011246788888888888 8999999999997652
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+..++..+|++|+|+|+.......+..++..+... ..|+++++||+|....
T Consensus 78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~a 131 (270)
T cd01886 78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-----NVPRIAFVNKMDRTGA 131 (270)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 22334456677999999999877777777777766542 2489999999997643
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-16 Score=121.25 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++.. ++.. ..++.|.......+.. ++ ..+.+|||||..+. ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-----------~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDY-----------RAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccc-----------hHHH
Confidence 789999999999999999999987 3332 2345555555554555 56 67899999995542 1112
Q ss_pred HhccCCccEEEEEEECCCC-CChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNR-FSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~-~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
......++++++++|.... .+.. .......+...... ..|+++++||+|.... . .... ....+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~--------~~~~~~ 134 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTH--------VAFLFA 134 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHH--------HHHHHh
Confidence 2223455677777776522 1111 12333444443322 3599999999998754 2 1111 222233
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..+ .++++ .|+..+.|+.+++++|.
T Consensus 135 ~~~~~~~~~------~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEPIIP------LSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCceEE------eecCCCCCHHHHHHHhh
Confidence 222 23333 67888899999998874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-16 Score=129.00 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCC-------------CCcce------------------------eEEEEEE
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGS-------------SGVTK------------------------TCEMQRT 64 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-------------~~~T~------------------------~~~~~~~ 64 (311)
+|+++|+.++|||||+++++.... ..+... .|.|. ......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999985322 110000 01111 0000122
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc--CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK--DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i 142 (311)
.. .+..++++||||+.+ +.......+ ..+|++++|+|+.++++..+...+.++... + .|++
T Consensus 80 ~~-~~~~i~liDtpG~~~-----------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~i 142 (224)
T cd04165 80 EK-SSKLVTFIDLAGHER-----------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVF 142 (224)
T ss_pred ee-CCcEEEEEECCCcHH-----------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEE
Confidence 33 577899999999653 221112222 368999999999888888888888887753 2 4899
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe--------------------cCCchhhhhhHHHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF--------------------DNKTKDAAKRTEQVGKLL 202 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--------------------~~~~~~sa~~~~~i~~l~ 202 (311)
+|+||+|.... ..+...+.. +...+...+..-.++ .....+|+.++.|++.|.
T Consensus 143 vvvNK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~ 215 (224)
T cd04165 143 VVVTKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLH 215 (224)
T ss_pred EEEECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHH
Confidence 99999998755 444444333 333333211110000 011236888999999999
Q ss_pred HHHHHH
Q 021534 203 SLVNSV 208 (311)
Q Consensus 203 ~~i~~~ 208 (311)
..|..+
T Consensus 216 ~~L~~l 221 (224)
T cd04165 216 AFLNLL 221 (224)
T ss_pred HHHHhc
Confidence 988654
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=140.85 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=107.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCC------cc-cc---c----cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGK------KA-FM---S----KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~------~~-~~---~----~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+.++|+++|+.++|||||+++|++. .. +. . .....+.|.......+.. ++..+.++||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc
Confidence 3457799999999999999999999742 10 00 0 011257788887777776 77899999999986
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~ 160 (311)
+. ..... .....+|++++|+|+.......+...+..+... + .| +|+++||+|+++. ..+.+
T Consensus 136 ~f-------~~~~~----~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv~~--~~~~~ 197 (447)
T PLN03127 136 DY-------VKNMI----TGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G----VPSLVVFLNKVDVVDD--EELLE 197 (447)
T ss_pred ch-------HHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEeeccCCH--HHHHH
Confidence 41 11122 223458999999999877777787777776653 3 36 6789999998754 33333
Q ss_pred HhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhH-------HHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRT-------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~-------~~i~~l~~~i~~~~~ 210 (311)
.+.. .+..++..++. ++++.+. .++.++ .++..|++.+.+.++
T Consensus 198 ~i~~----~i~~~l~~~~~~~~~vpiip~Sa---~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 198 LVEM----ELRELLSFYKFPGDEIPIIRGSA---LSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHH----HHHHHHHHhCCCCCcceEEEecc---ceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3321 24455544322 2322111 111122 246788888887664
|
|
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=120.60 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+.-++|+++|.+|+|||-|+.+++.... ...+......+.....+.+ +++ +..||||.| +++++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF--~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAG-----------QERyr 77 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEF--SLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAG-----------QERYR 77 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccccc--CcccccceeEEEEeeceee-cCcEEEEeeecccc-----------hhhhc
Confidence 4558999999999999999999998775 2233333334444444555 554 779999999 45677
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...+.+++++.+.++|.|++.+.+-.. ..||..|+.+..+ ..++++|.||+|+... ..+.. ..-+...
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~~l--raV~t-------e~~k~~A 146 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLNHL--RAVPT-------EDGKAFA 146 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhhhc--cccch-------hhhHhHH
Confidence 777788999999999999985555443 5677777776544 3489999999997643 22111 1123333
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+.-+-.++. +||+...+++..+..+...
T Consensus 147 e~~~l~f~E------tSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 147 EKEGLFFLE------TSALDATNVEKAFERVLTE 174 (222)
T ss_pred HhcCceEEE------ecccccccHHHHHHHHHHH
Confidence 443444443 6788888888877665543
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=114.42 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=102.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|.+|+|||||+-+++...+ ....+.....+.....+.+ ++. .+.||||+| +++++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f--d~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAG-----------qErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF--DDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAG-----------QERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc--CccCCceeeeeEEEEEEEE-cCceEEEEEEeccc-----------hHhhhc
Confidence 459999999999999999999886654 2222233344555555555 443 899999999 567888
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++.++|+|.|++.|-+-.. .-|++.+..++.. ...-.++|.||+|.-.. ..+.... =.....
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~--R~V~reE-------G~kfAr 145 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESE--RVVDREE-------GLKFAR 145 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhc--ccccHHH-------HHHHHH
Confidence 88899999999999999985533322 2445555554433 11236789999995432 2222111 122333
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++.-++. .||++..+++..++.+..
T Consensus 146 ~h~~LFiE------~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 146 KHRCLFIE------CSAKTRENVQCCFEELVE 171 (209)
T ss_pred hhCcEEEE------cchhhhccHHHHHHHHHH
Confidence 33333333 678888888777765554
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=137.77 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=85.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCC------cccc----c----cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGK------KAFM----S----KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~------~~~~----~----~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+.++|+++|+.++|||||+++|++. ..+. . .....+.|.......+.. ++..+.||||||+.
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~ 86 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA 86 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchH
Confidence 3567799999999999999999999853 1100 0 001256777776666655 67789999999965
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+ +..........+|++++|+|+..+....+...+..+... +. .++++++||+|+.+.
T Consensus 87 ~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 87 D-----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD 143 (394)
T ss_pred H-----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence 3 222223334578999999999877777777777776543 32 245678999998754
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-16 Score=130.23 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCCcceeEEEEEEEeeCCceE
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFM-----------------------------SKAGSSGVTKTCEMQRTMLKAGQVV 72 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~~~l 72 (311)
+|+++|++++|||||+.+|+...... ......+.|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 58999999999999999996432100 0001246788888888888 89999
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 73 NVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
.+|||||+.+ +...+......+|++|+|+|+++. ........+.... ..+. +|+++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999643 222233345678999999999852 2233344444333 2331 4899999
Q ss_pred eccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHH
Q 021534 146 TGGDELED--NDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 146 nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~ 199 (311)
||+|+... ......+.+.. +...+...+. ++++ +||.++.|+.
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~~~~ii~------iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPKDVPFIP------ISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecCcCCCCC
Confidence 99998732 11333443333 4445555432 2444 6777776655
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-16 Score=142.11 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=101.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc------------CC-------------------CCCcceeEEEEEEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK------------AG-------------------SSGVTKTCEMQRTM 65 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~------------~~-------------------~~~~T~~~~~~~~~ 65 (311)
..+.++|+++|++++|||||+++|+........ .+ ..+.|..+....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 567799999999999999999999865432111 00 13567777777777
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
+ ++..+.||||||+.+ +..........+|++++|+|+..++...+...+..+.. .+. +|+++++
T Consensus 104 ~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iIvvv 167 (474)
T PRK05124 104 T-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLVVAV 167 (474)
T ss_pred c-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceEEEE
Confidence 7 788999999999543 22222223577899999999986666655544444333 332 4799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcC----CcEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCD----NRCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|........+.+.... +..++...+ ..+++ +|+.++.|+..
T Consensus 168 NKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~~~~~~iip------vSA~~g~ni~~ 215 (474)
T PRK05124 168 NKMDLVDYSEEVFERIRED-----YLTFAEQLPGNLDIRFVP------LSALEGDNVVS 215 (474)
T ss_pred EeeccccchhHHHHHHHHH-----HHHHHHhcCCCCCceEEE------EEeecCCCccc
Confidence 9999874322333333332 444444333 33444 56666666654
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=122.05 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++.+... +.... +..........+.. ++. .+.||||||... +.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYI-PTIGIDSYSKEVSI-DGKPVNLEIWDTSGQER-----------FDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSE-TTSSEEEEEEEEEE-TTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccc-cccccccccccccc-ccccccccccccccccc-----------cccccc
Confidence 689999999999999999998764 22111 11112333334444 343 799999999543 122223
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..+.++|++|+|+|.+++-+-.. ..++..+....+. ..|++++.||.|+... ..+.. .....+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~--~~v~~-------~~~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDE--REVSV-------EEAQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGG--SSSCH-------HHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccceeeecccccccc--ccchh-------hHHHHHHHHhC
Confidence 34778899999999985433332 4667777776652 2499999999997753 22111 11355666667
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++. +|+.++.++.+++..+.+.+
T Consensus 136 ~~~~e------~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 136 VPYFE------VSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SEEEE------EBTTTTTTHHHHHHHHHHHH
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 66665 67788899999988876543
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.7e-16 Score=140.73 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=100.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------c---------------CCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS--------------K---------------AGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~---------------~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|++++|||||+++|+....... + ....+.|.+.....+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 4569999999999999999999985321100 0 01247788888888877 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---CChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---FSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
+..+.||||||..+ +.......+..+|++++|+|++++ ........+..+ ...+. .|+++++
T Consensus 84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence 88999999999532 333333345778999999999855 333333333333 33332 4799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|+.......+.....+ +..++...+. ++++ +||.++.|+.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~~~~~i~------iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPDTVPFIP------ISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------eeccccccccc
Confidence 9999874322333333332 5556655442 2333 67777777765
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=143.58 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-cccc-------------CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSK-------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~ 86 (311)
.+|+++|+.++|||||+++|+.... +... ....+.|.......+.| .+..++||||||+.|+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 5899999999999999999986421 1111 01246788888888888 8999999999997653
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
...+..++..+|++++|+|+.+........++..+.. .+ .|+++++||+|..... ..+.+.+
T Consensus 78 --------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~-~~----ip~IVviNKiD~~~a~---~~~v~~e-- 139 (594)
T TIGR01394 78 --------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE-LG----LKPIVVINKIDRPSAR---PDEVVDE-- 139 (594)
T ss_pred --------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH-CC----CCEEEEEECCCCCCcC---HHHHHHH--
Confidence 2233344567899999999986666677777776655 22 4899999999975431 1111121
Q ss_pred CchHHHHHHhc-------CCcEEEecCCchhhhhhHH----------HHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLC-------DNRCVLFDNKTKDAAKRTE----------QVGKLLSLVNSVIVQ 211 (311)
Q Consensus 167 ~~~~~~~~~~~-------~~~~~~f~~~~~~sa~~~~----------~i~~l~~~i~~~~~~ 211 (311)
+..++..+ ..++++ .|+.++. ++..|++.|.+.++.
T Consensus 140 ---i~~l~~~~g~~~e~l~~pvl~------~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDFPIVY------ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ---HHHHHHhhccccccccCcEEe------chhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 23333221 122333 5665553 789999999888764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=130.78 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------------CCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------------SSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------------~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.+|+++|++|+|||||+++|+.........+ ..+.+.......+.+ .+..+.+|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 6899999999999999999985432111000 023455556667778 8899999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++ ......++..+|++|+|+|++.++......++..... . ..|+++++||+|....
T Consensus 82 ~df-----------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~----~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-----------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-R----GIPIITFINKLDREGR 138 (267)
T ss_pred hHH-----------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-c----CCCEEEEEECCccCCC
Confidence 652 1112233456799999999986666555555554433 2 2589999999997644
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=139.60 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc-CCCCCcceeEEEEEEEe-------------------------eCCceE
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK-AGSSGVTKTCEMQRTML-------------------------KAGQVV 72 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-~~~~~~T~~~~~~~~~~-------------------------~~~~~l 72 (311)
+.++|+++|++++|||||+++|++....... ....+.|....+..+.+ ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 5689999999999999999999875321000 00123333332211110 014679
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 73 NVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
++|||||..+ +...+......+|++++|+|++++. .......+..+.. .+. +|+++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence 9999999543 3333333445679999999998655 4555555555433 332 4799999999987
Q ss_pred CCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 152 EDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. ....+.... +..++... +..+++ .|+.++.|++.|+++|...++
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENAPIIP------VSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCCeEEE------EECCCCCChHHHHHHHHHhCC
Confidence 54 322222221 23333221 223333 788889999999999998654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=114.50 Aligned_cols=160 Identities=15% Similarity=0.108 Sum_probs=107.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+++.++|.+|+|||+|+-.++.....+....+ ...+.....+.+ +++ ++.||||.|. +.+++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~T--iGvefg~r~~~i-d~k~IKlqiwDtaGq-----------e~frs 70 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLT--IGVEFGARMVTI-DGKQIKLQIWDTAGQ-----------ESFRS 70 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccce--eeeeeceeEEEE-cCceEEEEEEecCCc-----------HHHHH
Confidence 3489999999999999999999988753333322 223333344444 444 8899999994 44777
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++.++|+|+|++.+-+-.. ..+|.-++.+..+ .--++++.||+|+... ..+.... -....+
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~~r--R~Vs~EE-------GeaFA~ 139 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLEAR--REVSKEE-------GEAFAR 139 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhhcc--ccccHHH-------HHHHHH
Confidence 77888999999999999985544333 3555556655422 2358888999998755 3332221 123334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..|-.+. .+||+++.++++.+.-+...+
T Consensus 140 ehgLifm------ETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 140 EHGLIFM------ETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HcCceee------hhhhhhhhhHHHHHHHHHHHH
Confidence 4343333 489999999999987766443
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=124.96 Aligned_cols=161 Identities=15% Similarity=0.035 Sum_probs=96.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEE--EEee-CCceEEEEeCCCCCCCCCChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQR--TMLK-AGQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~--~~~~-~~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
+....++|+++|++|||||||++.++..... ... ..|....... +... ....+.+|||||...
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~---------- 70 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFE-KKY---IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK---------- 70 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCC-CCC---CCccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence 3445699999999999999999765543321 111 1222222222 2221 234889999999543
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+......++..++++++|+|++++.+-.. ..++..+..... ..|+++++||+|.... ....+ ..
T Consensus 71 -~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~~~--~~~~~---------~~ 135 (215)
T PTZ00132 71 -FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVKDR--QVKAR---------QI 135 (215)
T ss_pred -hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCccc--cCCHH---------HH
Confidence 22222334667899999999985544333 344444544432 2589999999997543 11111 11
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+....+..++. .|+.++.++++++.+|...+..
T Consensus 136 ~~~~~~~~~~~e------~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 136 TFHRKKNLQYYD------ISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHhh
Confidence 223333444444 6788889999999888876654
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=138.34 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=103.9
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEee-------------------------C
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLK-------------------------A 68 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~-------------------------~ 68 (311)
...++.++|+++|+.++|||||+.+|++...... .....+.|.........+. .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 3455679999999999999999999987421000 0112344544433221110 0
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
...++||||||..+ +..........+|++++|+|++++. ...+...+..+.. .+. .|+++|+||
T Consensus 84 ~~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK 148 (411)
T PRK04000 84 LRRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNK 148 (411)
T ss_pred ccEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEe
Confidence 25799999999432 3333333445679999999998665 5555555555543 221 479999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+|+... ......... +..++... +.++++ +|+.++.|++.|++.|...++
T Consensus 149 ~Dl~~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 149 IDLVSK--ERALENYEQ-----IKEFVKGTVAENAPIIP------VSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred eccccc--hhHHHHHHH-----HHHHhccccCCCCeEEE------EECCCCcCHHHHHHHHHHhCC
Confidence 998764 322221221 23333221 223343 788899999999999988654
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-16 Score=119.67 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=89.8
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
++|++|+|||||+|++++........ ..|. ......... .+..+.+|||||..+. .......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence 58999999999999999876521111 1222 222322221 2568999999996642 1222344
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
.+.+|+++||+|++++....+...+.............|+++++||+|.... ........ ...........+
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~--~~~~~~~~------~~~~~~~~~~~~ 137 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE--RVVSEEEL------AEQLAKELGVPY 137 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc--cchHHHHH------HHHHHhhcCCcE
Confidence 6788999999999854443333222011111112234699999999998755 22221110 112223334555
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+. +|+..+.++.+++++|.
T Consensus 138 ~~------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 138 FE------TSAKTGENVEELFEELA 156 (157)
T ss_pred EE------EecCCCCChHHHHHHHh
Confidence 55 56666788899888764
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=142.57 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~~ 82 (311)
.+.|+++|++|+|||||+|+|++.... ...+.+.|.+.....+.+. ....+.||||||+.+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 368999999999999999999998652 2222334443332222221 012489999999654
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+......++..+|++++|+|+++.+...+...+..+... ..|+++++||+|+..
T Consensus 82 -----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 -----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 333333456788999999999877777777777666542 258999999999864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-15 Score=120.97 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee------CCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK------AGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~------~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
++|+++|.+|+|||||++.+++...........+++ +....+.+. ....+.||||+|-.. +
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~--~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~ 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCS--VDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------V 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeee--EEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------H
Confidence 479999999999999999999876422211111222 222223331 123689999999433 4
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC-----------------CCccCeEEEEEeccCCCCCChh
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG-----------------KKISDYMIVVFTGGDELEDNDE 156 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ilv~nk~D~~~~~~~ 156 (311)
......+++++|++|+|+|++++-+-.. ..|+..+....+ .+...|+++|.||.|+.+. .
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r 145 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--K 145 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--c
Confidence 4445556889999999999986544433 345555554321 1123599999999998654 2
Q ss_pred cHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 157 TLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
.+...... .....+..+++......
T Consensus 146 ~~~~~~~~---~~~~~ia~~~~~~~i~~ 170 (202)
T cd04102 146 ESSGNLVL---TARGFVAEQGNAEEINL 170 (202)
T ss_pred ccchHHHh---hHhhhHHHhcCCceEEE
Confidence 11111100 01244566677775544
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=144.03 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=103.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccc------C-------CCCCcceeEEEEEEEee--CC--ceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSK------A-------GSSGVTKTCEMQRTMLK--AG--QVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~------~-------~~~~~T~~~~~~~~~~~--~~--~~l~liDTPG~~~ 82 (311)
..+|+++|++|+|||||+++|+........ . ...|.|.......+.|. ++ ..++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 479999999999999999999865321110 0 11356666655555552 22 5789999999776
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+ ...+..++..+|++|+|+|++++.+..+...+..+.. . ..|+++|+||+|+.... .....
T Consensus 83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~----~ipiIiViNKiDl~~~~---~~~~~ 143 (595)
T TIGR01393 83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N----DLEIIPVINKIDLPSAD---PERVK 143 (595)
T ss_pred H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c----CCCEEEEEECcCCCccC---HHHHH
Confidence 3 2233445667899999999987776666544433332 1 24899999999975431 11111
Q ss_pred hhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+ +...+......++ .+||.++.|+.+|++.|.+.++.
T Consensus 144 ~e-----l~~~lg~~~~~vi------~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 144 KE-----IEEVIGLDASEAI------LASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HH-----HHHHhCCCcceEE------EeeccCCCCHHHHHHHHHHhCCC
Confidence 11 2222211011233 37899999999999999887764
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=135.64 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=107.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccc-------c-------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAF-------M-------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~-------~-------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|+.++|||||+++|++...- . ......+.|.......+.+ ++..+.++||||+.+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH
Confidence 356699999999999999999999873110 0 0011356777776666665 677899999999532
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEE-EEEeccCCCCCChhcHHHH
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI-VVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-lv~nk~D~~~~~~~~~~~~ 161 (311)
+..........+|++++|+|+..+....+...+..+... + .|.+ +++||+|+... ....+.
T Consensus 88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~--~~~~~~ 149 (396)
T PRK00049 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch--HHHHHH
Confidence 333344456789999999999877777787777776653 3 3665 68999998753 222222
Q ss_pred hhhcCCchHHHHHHhcC-----CcEEEecCCch----hhhhhHHHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCD-----NRCVLFDNKTK----DAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~----~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. .+..++..++ .++++.+.... .+.....++..|++.|...++
T Consensus 150 ~~~----~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VEM----EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHH----HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 221 2555555443 23333222110 001112256788888887653
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=112.23 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++.+++|.||+|||||+-.+..... ++........+..+..+.+ +|. .+.||||+| .+.+....
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAG-----------qErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAG-----------QERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeec-CCcEEEEEEeeccc-----------HHHHHHHH
Confidence 5678999999999999988766544 3322233445556666666 443 889999999 56788888
Q ss_pred HhccCCccEEEEEEECCCCCCh-hHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSK-EEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++++|.|+++.-+- +-..||+.++..+.. .|-++|.||.|..+. ..+.. .+.+.....-
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R--rvV~t-------~dAr~~A~~m 142 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER--RVVDT-------EDARAFALQM 142 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc--eeeeh-------HHHHHHHHhc
Confidence 8889999999999999844333 336778888877653 589999999998765 33321 1234444444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +|++...+++..+..|.+.+
T Consensus 143 gie~FE------TSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 143 GIELFE------TSAKENENVEAMFHCITKQV 168 (198)
T ss_pred Cchhee------hhhhhcccchHHHHHHHHHH
Confidence 655554 78888889999988887655
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=138.32 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC-----------------CCCCcceeEEEEEEEeeCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMS--------------KA-----------------GSSGVTKTCEMQRTMLKAG 69 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~-----------------~~~~~T~~~~~~~~~~~~~ 69 (311)
++|+++|+.++|||||+++|+....... +. ...+.|.+.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 5899999999999999999975432111 00 0135677777777777 78
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.||||||+.+ +.......+..+|++|+|+|+..++...+...+..+.. .+. +++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 8999999999543 22222334567899999999987777766665555544 332 47999999999
Q ss_pred CCCCChhcHHHHhhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhHHHHHH
Q 021534 150 ELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~ 200 (311)
........+.+.... +..++...+. ++++ +|+.++.|+..
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~iip------iSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGFRDVTFIP------LSALKGDNVVS 187 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCCCCccEEE------eecccCCCCcc
Confidence 875422223322222 4444444332 3444 56666666553
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-16 Score=136.43 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=115.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..+.|+++|+||+|||||+|+|++.+...+. +-+|+|.+.....+.+ +|.++.|+||.|+.. .+.+.+...-....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe--~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIRE--ESNDGIEALGIERA 342 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEecccccc--ccCChhHHHhHHHH
Confidence 4589999999999999999999999873332 3468999999888988 999999999999987 22333333333444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHh-CCCc------cCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLF-GKKI------SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~-~~~~------~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
...+..+|+|++|+|+....+.++..+.+.+...- |-.. ..+++++.||.|...+- ...... .+.
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~-~~~~~~-------~~~ 414 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI-PEMTKI-------PVV 414 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc-ccccCC-------cee
Confidence 55677889999999996555556655555444321 1112 26899999999987540 001000 000
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....+... |......++.++++...|...+.+.+.
T Consensus 415 -~~~~~~~~~--~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 415 -YPSAEGRSV--FPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred -ccccccCcc--cceEEEeeechhhhHHHHHHHHHHHHH
Confidence 000011111 111123577888999999998887653
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=124.15 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=74.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCc-ceeEE-----------------------------------------
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGV-TKTCE----------------------------------------- 60 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~-T~~~~----------------------------------------- 60 (311)
|+|+|..++|||||||+|+|...++++..+... .+.+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999876655443110 00000
Q ss_pred -----------EEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHH
Q 021534 61 -----------MQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHIL 129 (311)
Q Consensus 61 -----------~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l 129 (311)
..........++.||||||+.+...... ..+..+++.+|++|||+++++.++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0111111334799999999987433322 3333445788999999999977777766655554
Q ss_pred HHHhCCCccCeEEEEEecc
Q 021534 130 ESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 130 ~~~~~~~~~~~~ilv~nk~ 148 (311)
..... ..+++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 44332 3599999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=145.59 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=102.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC-----------------CCCCcceeEEEEEE
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KA-----------------GSSGVTKTCEMQRT 64 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~-----------------~~~~~T~~~~~~~~ 64 (311)
+..+.++|+++|++++|||||+|+|++...... +. ...+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 455678999999999999999999987543111 00 01356667777777
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
.+ ++..+.||||||+.+ +..........+|++++|+|+..+....+...+..+... +. ++++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 77 788999999999543 222222345678999999999867766665555555443 32 479999
Q ss_pred EeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhHHHHH
Q 021534 145 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 145 ~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~~~i~ 199 (311)
+||+|+.......+.+.... +..++...+. ++++ +|+.++.|+.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~iip------iSA~~g~ni~ 210 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHDVTFIP------ISALKGDNVV 210 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCCccEEE------EecccCCCcc
Confidence 99999875322333333332 4444444432 2444 5666666665
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=142.87 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=104.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEee----CCceEEEEeCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLK----AGQVVNVIDTPGL 80 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~----~~~~l~liDTPG~ 80 (311)
+...+|+++|+.++|||||+++|+........ ....+.|.......+.|. .+..++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34579999999999999999999764321000 011355665555555552 1457999999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.++ ...+..++..+|++|+|+|++++....+...+..+.. . ..|+++|+||+|+... ....
T Consensus 85 ~dF-----------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~----~lpiIvViNKiDl~~a---~~~~ 145 (600)
T PRK05433 85 VDF-----------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-N----DLEIIPVLNKIDLPAA---DPER 145 (600)
T ss_pred HHH-----------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C----CCCEEEEEECCCCCcc---cHHH
Confidence 763 2223344667899999999987776666555444332 1 2489999999997543 1111
Q ss_pred HhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.... +...+......+++ .||.++.|+.+|+++|.+.++.
T Consensus 146 v~~e-----i~~~lg~~~~~vi~------iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 146 VKQE-----IEDVIGIDASDAVL------VSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHH-----HHHHhCCCcceEEE------EecCCCCCHHHHHHHHHHhCcc
Confidence 1111 22221110112333 7889999999999999887764
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=139.76 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-cccc-------------CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-FMSK-------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
...+|+++|+.++|||||+++|++... +... ....+.|.......+.+ ++..+.+|||||..++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH
Confidence 458999999999999999999996421 1111 11246777777777888 88999999999987642
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+..++..+|++|+|+|+.++....+...+..+.. .+ .|.++++||+|....
T Consensus 83 -----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 -----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YG----LKPIVVINKVDRPGA 135 (607)
T ss_pred -----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cC----CCEEEEEECcCCCCC
Confidence 223344677899999999986666666666666554 22 488999999997643
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=119.97 Aligned_cols=164 Identities=16% Similarity=0.027 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhCCcccccc--CCCCCccee----EEEE-------EEEeeCC--ceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATAN-SILGKKAFMSK--AGSSGVTKT----CEMQ-------RTMLKAG--QVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin-~l~g~~~~~~~--~~~~~~T~~----~~~~-------~~~~~~~--~~l~liDTPG~~~~ 83 (311)
.++|+++|.+|+|||||++ .+.+... ... .....+|.. .... ...+ ++ ..+.||||||....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhh
Confidence 4799999999999999996 5544321 111 011112221 1101 0112 33 48899999995421
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
+ ...+++++|++|+|+|++++.+-... .++..+..... ..|+++|.||+|+...........
T Consensus 80 ----------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~~~~~~~~~~ 143 (195)
T cd01873 80 ----------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRYADLDEVNRA 143 (195)
T ss_pred ----------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccccccchhhhc
Confidence 1 12357899999999999866544433 35666665542 258999999999753200000000
Q ss_pred ----------hhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 162 ----------LGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 162 ----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
...........+....+..++. +||+++.|++++++.+.+
T Consensus 144 ~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E------~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 144 RRPLARPIKNADILPPETGRAVAKELGIPYYE------TSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccccCCccCHHHHHHHHHHhCCEEEE------cCCCCCCCHHHHHHHHHH
Confidence 0000112245566666665554 799999999999988764
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=117.76 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+++++.... +....+.+ ......+.+ ++ ..+.+|||+|... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~~~---~~~~~~i~~-~~~~~~l~i~D~~g~~~---------~------ 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY-VQLESPEG---GRFKKEVLV-DGQSHLLLIRDEGGAPD---------A------ 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCC-CCCCCCCc---cceEEEEEE-CCEEEEEEEEECCCCCc---------h------
Confidence 4799999999999999998876543 22111111 111233444 55 3688999999642 1
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.++..+|++++|+|++++-+-.. ..++..+...... ...|+++|.||.|+.......+.... ...+....
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~ 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence 12456799999999986555444 4555666554321 23599999999996422112222111 12333332
Q ss_pred C-CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 D-NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+ ..++. +||+++.|+++++..+.+
T Consensus 132 ~~~~~~e------~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYYE------TCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCcEEE------EecCCCCCHHHHHHHHHh
Confidence 2 34444 789999999999988764
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=111.19 Aligned_cols=161 Identities=13% Similarity=0.088 Sum_probs=105.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
-.++|.++|.+.+|||||+-+.++.+.-+.-.+. .........+.-. ..-.+.||||.|.. .++..
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsT--vGidFKvKTvyr~~kRiklQiwDTagqE-----------ryrti 86 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVST--VGIDFKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTI 86 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeee--eeeeEEEeEeeecccEEEEEEEecccch-----------hhhHH
Confidence 4579999999999999999999988753222222 2223333332221 22388999999943 34455
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++++++++|+++|+++.-+-+. ..+.-.++..+-. ..|+|+|.||||+-.+ ..+... ..+.+...
T Consensus 87 TTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~e--Rvis~e-------~g~~l~~~ 155 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSE--RVISHE-------RGRQLADQ 155 (193)
T ss_pred HHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccc--eeeeHH-------HHHHHHHH
Confidence 5567899999999999984333332 3444455544333 2489999999997655 444322 23566777
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.|..++. .|++.+-+++.+++.+...+
T Consensus 156 LGfefFE------tSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 156 LGFEFFE------TSAKENINVKQVFERLVDII 182 (193)
T ss_pred hChHHhh------hcccccccHHHHHHHHHHHH
Confidence 7776654 67777788888888776654
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=121.19 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+|+|++|+|||||++.+..... +.... .+........+.+ .+ ..+.+|||||...... + .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~---~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-PEEYH--PTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------L---R 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccC--CcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------c---c
Confidence 5899999999999999999985543 12111 1111111223333 33 3578999999654211 1 1
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC--CchHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKEIL 174 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~--~~~~~~~~ 174 (311)
...+..+|++++|+|+++.-+... ..++..+....+. .|+++|.||+|+.... ...+....... ......+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA 142 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence 123577899999999974433322 2456666654432 6999999999975321 11100000000 01122333
Q ss_pred HhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+. .++. +||.++.|++++++.+.+.+
T Consensus 143 ~~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 143 KEIGAKKYME------CSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHhCCcEEEE------ccCCCCCCHHHHHHHHHHHH
Confidence 44443 3443 78899999999999998654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=135.11 Aligned_cols=137 Identities=21% Similarity=0.225 Sum_probs=98.0
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHH
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
+|+..+...+++|+|.||+|||||+|.++..++ .....+.+|...-+.++.+ .-..+.++||||+.|....+..+.+
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHH
Confidence 455567789999999999999999999998876 4444456666666666666 6678999999999986544333322
Q ss_pred H--HHHHHHhccCCccEEEEEEECC--CCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 93 E--IVKCIGMAKDGIHAVLLVFSIR--NRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 93 ~--~~~~~~~~~~~~d~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
. |...+ .--.+|||++|.+ .+.+..+ ..+...++.+|.. +|+|+|+||+|.... +.+.+.
T Consensus 238 mqsITALA----HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~--edL~~~ 302 (620)
T KOG1490|consen 238 MQIITALA----HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRP--EDLDQK 302 (620)
T ss_pred HHHHHHHH----HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCc--cccCHH
Confidence 1 12221 1226899999998 4555554 5677778887754 799999999999877 555443
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=128.73 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc--CC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK--AG--------------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~--~~--------------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+|+++|++|+|||||+|+|++....... .. ..+.|.......+.+ .+..++||||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 5899999999999999999764321110 00 013444455566677 788999999999654
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+...+..++..+|++++|+|++..........+..+.. . ..|+++++||+|....
T Consensus 77 --------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~----~~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 --------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE-A----GIPRIIFINKMDRERA 131 (268)
T ss_pred --------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECCccCCC
Confidence 22223334557799999999986666655555555543 2 2489999999997644
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=114.70 Aligned_cols=141 Identities=22% Similarity=0.293 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+|+|++|||||||+++|.|... ...-|..+.++. .+|||||=+- .. ..+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~~---------~~IDTPGEyi---E~----~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYYD---------NTIDTPGEYI---EN----PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEecc---------cEEECChhhe---eC----HHHHHHHHH
Confidence 5899999999999999999998764 112233332221 2699999442 11 223333444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+...+|+|++|.|++.+...-.-.+.. .|. +|+|=|+||+|+..+. ..++. ....+...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa~----~f~----~pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFAS----MFN----KPVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhhc----ccC----CCEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 455789999999998544333323322 232 5999999999987321 33332 24455555654
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..+ .+|+.++.|+++|.++|.
T Consensus 122 ~if-----~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EIF-----EVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CeE-----EEECCCCcCHHHHHHHHh
Confidence 322 267888999999999875
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=125.78 Aligned_cols=164 Identities=18% Similarity=0.152 Sum_probs=107.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.-.|+++|-||+|||||+|+|+.... ....++.+|.......+.+.+...+++-|.||+..-.-.+.-+-..+-+.+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi- 272 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI- 272 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH-
Confidence 45689999999999999999999876 445567788888888777745556999999999764333333333343333
Q ss_pred hccCCccEEEEEEECCCCC--Chh-HHHHH-HHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 100 MAKDGIHAVLLVFSIRNRF--SKE-EGAAI-HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~--~~~-~~~~l-~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++||+|++... ++- +...| ..|..+-..=..+|.++|.||+|..+..... +.++.+
T Consensus 273 ---ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~------------l~~L~~ 337 (366)
T KOG1489|consen 273 ---ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL------------LSSLAK 337 (366)
T ss_pred ---HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH------------HHHHHH
Confidence 3458999999998331 222 22222 2222221112346899999999975331111 234445
Q ss_pred hcCCc-EEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 176 LCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 176 ~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..... +++ .||..+.++.+|++.+..
T Consensus 338 ~lq~~~V~p------vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNPHVVP------VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCCcEEE------eeeccccchHHHHHHHhh
Confidence 44444 555 678888999999988764
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=132.81 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=95.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFM--------------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|++++|||||+++|++..... ......+.|.......+.+ ++..++||||||+.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 5567999999999999999999999632110 0111246777777666777 788999999999543
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+..........+|++++|+|+.......+.+.+..+.. .|. .++++++||+|+... +.+.+.+
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~gi---~~iIvvvNK~Dl~~~--~~~~~~i 219 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VGV---PNMVVFLNKQDQVDD--EELLELV 219 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEecccccCH--HHHHHHH
Confidence 33333344557899999999987777777777766554 332 238889999998764 3333333
Q ss_pred hhcCCchHHHHHHhc
Q 021534 163 GRECPKPLKEILQLC 177 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (311)
.. .+..++..+
T Consensus 220 ~~----~i~~~l~~~ 230 (478)
T PLN03126 220 EL----EVRELLSSY 230 (478)
T ss_pred HH----HHHHHHHhc
Confidence 21 256666654
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=136.83 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~~ 82 (311)
.+.|+++|++|+|||||+|+|.|... ....+.+.|.+...+.+.+. .-..++||||||+.+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 36899999999999999999998764 22222233333222211110 001378999999754
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+.......+..+|++++|+|+++++...+...+..+.. . ..|+++++||+|..
T Consensus 84 -----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~----~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 -----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-R----KTPFVVAANKIDRI 136 (586)
T ss_pred -----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-c----CCCEEEEEECcCCc
Confidence 23333344567899999999987777777777766654 2 35899999999975
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=107.37 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|+.|+|||.|+..++..- ||.+.+ ...........++. ++. .+.||||.| ++++++..
T Consensus 8 fkivlvgnagvgktclvrrftqgl-fppgqg-atigvdfmiktvev-~gekiklqiwdtag-----------qerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGL-FPPGQG-ATIGVDFMIKTVEV-NGEKIKLQIWDTAG-----------QERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccC-CCCCCC-ceeeeeEEEEEEEE-CCeEEEEEEeeccc-----------hHHHHHHH
Confidence 799999999999999999998654 333322 22334444555666 443 889999999 56677777
Q ss_pred HhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++.+|++|+|.|++ .+--.---+||..+.++....+ --|+|.||+|+.+. ..+...+. +-+...
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qig--------eefs~~ 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIG--------EEFSEA 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHH--------HHHHHh
Confidence 78889999999999998 3333344678888888765433 36889999998765 33333322 222222
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
...|+ ..+||+...+++.|+..+.
T Consensus 142 qdmyf-----letsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 142 QDMYF-----LETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhhh-----hhhcccchhhHHHHHHHHH
Confidence 22232 2467777889998887665
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-14 Score=109.76 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=109.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMS-----KAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
..+|+|.|+.|+|||||+.++.......+ ..+..+ +|+...+..+.+.++..+.|+||||.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq----------- 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ----------- 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc-----------
Confidence 47999999999999999999987653211 122233 67777777888855589999999994
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
.++.-+|....+++.++|+++|.+.+.+..+..+++.+..... .|+++..||.|+.+. . .++.++
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a--~---------ppe~i~ 143 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA--L---------PPEKIR 143 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC--C---------CHHHHH
Confidence 4466667777889999999999986666677788888776543 489999999998766 2 222344
Q ss_pred HHHHhc--CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 172 EILQLC--DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 172 ~~~~~~--~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+++..+ +.+++. .++..+.+..+.++.+..
T Consensus 144 e~l~~~~~~~~vi~------~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 144 EALKLELLSVPVIE------IDATEGEGARDQLDVLLL 175 (187)
T ss_pred HHHHhccCCCceee------eecccchhHHHHHHHHHh
Confidence 555544 444444 344445555655555543
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=132.26 Aligned_cols=170 Identities=21% Similarity=0.267 Sum_probs=124.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEeeCC--ceEEEEeCCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLKAG--QVVNVIDTPG 79 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG 79 (311)
.|.+...+++++.|-..|||||..+|+....+... ....|.|+..+...+.|.++ ..+++|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 36678899999999999999999998654431111 11258899999998888332 6899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHH
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLE 159 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~ 159 (311)
+.|+... .. .++.-++++|+|+|++++........+...-+. .-.+|+|+||+|+... ..+
T Consensus 135 HvDFs~E-------Vs----Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~a---dpe 195 (650)
T KOG0462|consen 135 HVDFSGE-------VS----RSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSA---DPE 195 (650)
T ss_pred cccccce-------eh----ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCC---CHH
Confidence 9997532 32 334456999999999988877776555444332 2369999999997644 223
Q ss_pred HHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 160 DYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
....+ +.+++..++..++. .||+++.++.++++.|.+.++...+
T Consensus 196 ~V~~q-----~~~lF~~~~~~~i~------vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 196 RVENQ-----LFELFDIPPAEVIY------VSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HHHHH-----HHHHhcCCccceEE------EEeccCccHHHHHHHHHhhCCCCCC
Confidence 22232 66777777777666 7999999999999999998876443
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=118.74 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML-KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|++|+|||||++.|++.....+ ..+.+.......... ..+..+.||||||... +...+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~~ 66 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKLL 66 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHHH
Confidence 4689999999999999999998754211 111111111111110 1356899999999653 333344
Q ss_pred hccCCc-cEEEEEEECCCCCChh-H-HHHH-HHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGI-HAVLLVFSIRNRFSKE-E-GAAI-HILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~-d~il~v~d~~~~~~~~-~-~~~l-~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+++.+ +++|||+|+....... + ..++ ..+..........|++++.||+|+...
T Consensus 67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 456666 9999999998331111 1 1122 222221111123599999999998754
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=130.39 Aligned_cols=174 Identities=20% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+..++|+|+|.+|+|||||||+|.|-..-..+..+.| +|.....|. .+.-.++++||.||++.+....+...+.+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 3568999999999999999999977432112222322 344444433 22445899999999988765555444433
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC-C------CChhcHHHHhhhcCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL-E------DNDETLEDYLGRECP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~-~------~~~~~~~~~~~~~~~ 167 (311)
. +...|.||+|.+ .+++..+..+.+.++++ | +|+++|-||+|.. . +..-..++.+++ ..
T Consensus 111 ~------~~~yD~fiii~s--~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR 176 (376)
T PF05049_consen 111 K------FYRYDFFIIISS--ERFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IR 176 (376)
T ss_dssp T------GGG-SEEEEEES--SS--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HH
T ss_pred c------ccccCEEEEEeC--CCCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcccCHHHHHHH-HH
Confidence 2 334488777655 48999999988888874 3 5999999999951 1 100011111111 11
Q ss_pred chHHHHHHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 168 ~~~~~~~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+-+...+ .+++..++.... ..++..|.+.+..-++.
T Consensus 177 ~~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 177 ENCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPA 219 (376)
T ss_dssp HHHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHH
Confidence 11233333323 355665554322 35678888887766654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=114.43 Aligned_cols=116 Identities=18% Similarity=0.169 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc--ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFM--SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
||+|+|.+|+|||||+++|.+..... ......+.+.......+.. ....+.+||++|....... ..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~-----------~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQ-----------HQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCT-----------SH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccc-----------cc
Confidence 69999999999999999999877531 1111223333333333322 3336889999996432111 01
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+..+|++++|+|.+++-+... ..++.++..........|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11445699999999984433333 234445555443223369999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-14 Score=121.07 Aligned_cols=170 Identities=21% Similarity=0.211 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
-|+++|-||+||||||++++.... .....+.+|.......+....+..+++-|.||+........-+-.++-+.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER- 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER- 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh-
Confidence 368999999999999999998875 55556777777777766654667899999999986433333333444444333
Q ss_pred cCCccEEEEEEECCCCCC----hhHHH-HHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 102 KDGIHAVLLVFSIRNRFS----KEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~----~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+.++++|+|++ +.. ..++. +...|..+-..=..+|.++|+||+|...+. +.++.+. ..+...
T Consensus 238 ---t~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~--------~~l~~~ 304 (369)
T COG0536 238 ---TRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELK--------KALAEA 304 (369)
T ss_pred ---hheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHH--------HHHHHh
Confidence 37999999998 322 23333 333444433333457999999999965431 3333322 223333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
++.....| +|+.++.+++.|+..+.+++...
T Consensus 305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 305 LGWEVFYL-----ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred cCCCccee-----eehhcccCHHHHHHHHHHHHHHh
Confidence 34333322 68888999999999999888653
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=129.09 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=121.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.|.++||-..|||||+..|-+.++ ......+.|.+...+.+.+. ....++++||||+ +.|..+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-----------eAFt~m 71 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-----------EAFTAM 71 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-----------HHHHHH
Confidence 47899999999999999999998886 44456789999999999985 3479999999994 335554
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
-..-..-+|++++|+++++.+.+.+.+.++.++.. ..|+++++||+|..+.+...+...+.+. .-..+.+
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~~np~~v~~el~~~-----gl~~E~~ 141 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-----GVPIVVAINKIDKPEANPDKVKQELQEY-----GLVPEEW 141 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-----CCCEEEEEecccCCCCCHHHHHHHHHHc-----CCCHhhc
Confidence 44445567999999999999999999888887763 3599999999998865323333333321 1112333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..+.. .+.||.++.|+.+|+..|.-..
T Consensus 142 gg~v~~----VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 142 GGDVIF----VPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCceEE----EEeeccCCCCHHHHHHHHHHHH
Confidence 433322 3489999999999999887543
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=121.11 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccC--------------CCCCcceeEEEEEEEee-C--------CceEEEEeC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKA--------------GSSGVTKTCEMQRTMLK-A--------GQVVNVIDT 77 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~--------------~~~~~T~~~~~~~~~~~-~--------~~~l~liDT 77 (311)
.+|+++|+.++|||||+++|+......... ...+.|.......+.+. . +..+.||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 379999999999999999997654211100 01234444433333331 1 568899999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
||+.++ ......++..+|++++|+|+..+........+...... ..|+++++||+|+.
T Consensus 81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-----RVKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 998763 22334446678999999999877777766666655431 24899999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-15 Score=123.52 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc-----------------CCCCCcceeEEEEEEEee----CCceEEEEeCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK-----------------AGSSGVTKTCEMQRTMLK----AGQVVNVIDTPGL 80 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------~~~~~~T~~~~~~~~~~~----~~~~l~liDTPG~ 80 (311)
+|+++|++|+|||||+++|++....... ....+.|.......+.+. ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 001233433333333331 2357899999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
.++ ......++..+|++++|+|+.+..+.....++..+.. . ..|+++|+||+|.+
T Consensus 82 ~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~----~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-E----GLPIVLVINKIDRL 136 (213)
T ss_pred cch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-c----CCCEEEEEECcccC
Confidence 763 2222334557799999999986666555444444332 1 25899999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=122.79 Aligned_cols=126 Identities=18% Similarity=0.219 Sum_probs=82.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--------------CCceEEEEeCCCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--------------AGQVVNVIDTPGL 80 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--------------~~~~l~liDTPG~ 80 (311)
.|....++|+|+|..|+|||||++.+.+...........+.+. ....+.+. ....+.||||+|-
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 3445569999999999999999999998764211111222222 22223331 1235899999994
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC----------CccCeEEEEEeccC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK----------KISDYMIVVFTGGD 149 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ilv~nk~D 149 (311)
. .+..+...+++++|++|+|+|++++-+... ..++..+....+. ....|++||.||+|
T Consensus 94 E-----------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 94 E-----------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred h-----------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 3 355556667899999999999985444333 3566666654321 11258999999999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
+...
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 8643
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-14 Score=118.09 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----------------------------------------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGS---------------------------------------------- 52 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~---------------------------------------------- 52 (311)
..+.|+|+|++|+||||++++|+|...++.+.+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4468999999999999999999997643332211
Q ss_pred ---CCcceeEEEEEEEeeCCceEEEEeCCCCCCCC--CChHHHHHHHHHHHHhccCC-ccEEEEEEECCCCCChhH-HHH
Q 021534 53 ---SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS--ADPEFVSKEIVKCIGMAKDG-IHAVLLVFSIRNRFSKEE-GAA 125 (311)
Q Consensus 53 ---~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~--~~~~~~~~~~~~~~~~~~~~-~d~il~v~d~~~~~~~~~-~~~ 125 (311)
.+.+..+-...+..+....++||||||+.... .....+...+...+..++.. .+.|++|+|++..+...+ ..+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 00000111111222123589999999997542 11244556666666666764 458999999986666666 455
Q ss_pred HHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 126 IHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 126 l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+.+.. ...++++|+||+|....
T Consensus 185 a~~ld~-----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDP-----QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH-----cCCcEEEEEECCCCCCc
Confidence 555543 23589999999998865
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=131.05 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------------------KAGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|+.++|||||+.+|+....... .....+.|.......+.+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 4558999999999999999999875211000 001246788888888888 8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-------ChhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-------SKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
+..++|+||||+.+ +..........+|++++|+|+..+. .....+.+..+.. .|. .++
T Consensus 84 ~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~i 148 (446)
T PTZ00141 84 KYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQM 148 (446)
T ss_pred CeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeE
Confidence 88999999999654 3333334456789999999998554 2455566655544 332 358
Q ss_pred EEEEeccCCC--CCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHH
Q 021534 142 IVVFTGGDEL--EDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 142 ilv~nk~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~ 199 (311)
|+++||+|.. ......+++.+.+ +...+...+. ++++ +|+.++.|+.
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~~~~~~~~ip------iSa~~g~ni~ 202 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGYNPEKVPFIP------ISGWQGDNMI 202 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCCCcccceEEE------eecccCCCcc
Confidence 8999999943 2222444444443 5666655443 2333 5666666654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=138.34 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=89.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc----cC------------CCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS----KA------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----~~------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG 79 (311)
+.....+|+++|++|+|||||+|+|++...... .. ...+.|.......+.| ++..+++|||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG 84 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPG 84 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCC
Confidence 455678999999999999999999975332110 00 0246788888888888 899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.++. . .+..++..+|++++|+|+.......+..++..+... ..|+++++||+|+...
T Consensus 85 ~~~~~-------~----~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFT-------V----EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA 142 (689)
T ss_pred Ccchh-------H----HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 87632 1 123345567999999999877777777777665542 2489999999998754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=129.77 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=105.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccC-CCCCcceeEEEEEEE---------------ee-------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKA-GSSGVTKTCEMQRTM---------------LK------------- 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-~~~~~T~~~~~~~~~---------------~~------------- 67 (311)
....++|+++|+..+|||||+.+|+|........ ...|.|....+.... +.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3567999999999999999999999865421111 112333333222110 00
Q ss_pred ----CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEE
Q 021534 68 ----AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 68 ----~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i 142 (311)
..+.+.||||||+.+ +...+......+|++++|+|+.++ ......+.+..+ ...|. +|++
T Consensus 111 ~~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcEE
Confidence 124789999999532 333333445678999999999854 455445555433 33443 4799
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|+||+|+.+. ..+.+.... +..++... ..++++ .||.++.|++.|++.|.+.++.
T Consensus 176 VvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~~~~~iip------VSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 176 ILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTIADNAPIIP------ISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EEEecccccCH--HHHHHHHHH-----HHHHHHhhccCCCeEEE------eeCCCCCCHHHHHHHHHhhCCC
Confidence 99999998754 444433332 34444321 233444 7889999999999999976543
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=137.53 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=89.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc----cC------------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS----KA------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----~~------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+++|++|+|||||+|+|+....... .. ...+.|.......+.| .+..++|+||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 44578999999999999999999974221000 00 1246788888888888 8999999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++ ..+ ...++..+|++|+|+|+...+...+...+..+.+. + .|+++++||||....
T Consensus 86 ~~f-------~~e----v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDF-------TIE----VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGA 142 (693)
T ss_pred HHH-------HHH----HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 652 112 33335566999999999888888888888877763 2 488999999998754
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=138.16 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=90.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc----C------------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK----A------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----~------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+++|++++|||||+|+|+........ . ...+.|.......+.| ++..+++|||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence 445789999999999999999999753211000 0 1346788888888888 8999999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+ +...+..++..+|++|+|+|+..+....+..++..+... + .|+++++||+|....
T Consensus 84 ~~-----------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VD-----------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred HH-----------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 54 222344456677999999999878888887777776652 2 489999999998754
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=114.55 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||++++.+...... ..+..+.......... . ...+.+|||+| ..++...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~g-----------q~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEG--YPPTIGNLDPAKTIEP-YRRNIKLQLWDTAG-----------QEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCccc--CCCceeeeeEEEEEEe-CCCEEEEEeecCCC-----------HHHHHHHH
Confidence 8999999999999999999998775211 1111111111111111 2 34688999999 34566777
Q ss_pred HhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 99 GMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++.+++++++|+|... +.......+...+....+. ..|+++|.||+|+...
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence 788999999999999873 2333335555566665542 3599999999998765
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-14 Score=124.39 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=122.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..+.|-+||+...|||||+.+|-+..+ ......|.|.++..+.+.++.|..++|.||||+ ..|..+-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-----------aAF~aMR 218 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-----------AAFSAMR 218 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcH-----------HHHHHHH
Confidence 457899999999999999999998876 334467899999999999988999999999994 4455555
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..-....|.+++|+-++++..+...+.++..+. +..|+|+.+||+|....+-+.+...+.. ..-.++.+|
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~G 288 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLG 288 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcC
Confidence 556667899999999988888888887776665 4469999999999764422222222221 122345566
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+.. .+.||+++.|++.|.+.+.-.
T Consensus 289 GdVQv----ipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 289 GDVQV----IPISALTGENLDLLEEAILLL 314 (683)
T ss_pred CceeE----EEeecccCCChHHHHHHHHHH
Confidence 66544 347899999999999987644
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=137.50 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc-------cC---------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS-------KA---------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-------~~---------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+|+|+.|+|||||+++|+....... +. ...+.|.......+.| .+..+.+|||||.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~ 83 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGH 83 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCc
Confidence 34578999999999999999999975321100 00 0135566666777888 8899999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++ ...+..++..+|++++|+|++.+........+..+... ..|+++++||+|....
T Consensus 84 ~df-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDF-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHH-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence 652 22333446677999999999877776666666655442 2589999999997753
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-14 Score=107.36 Aligned_cols=158 Identities=19% Similarity=0.230 Sum_probs=108.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.++|+++|..=+|||||+=+..... |...+.. ...+..+.... ....+.||||.| ++.+-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed----~ra~L~IWDTAG-----------QErfH 76 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVED----CRADLHIWDTAG-----------QERFH 76 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhccccccc----ceeeeeeeeccc-----------hHhhh
Confidence 4999999999999999987766443 2222211 11222222111 233789999999 34455
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..-..++++.+++|+|+|++++-+-.. ..|+..|+.+.|... -+++|.||+|+-+. ..+.. .....+.
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee--R~Vt~-------qeAe~YA 145 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE--RQVTR-------QEAEAYA 145 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh--hhhhH-------HHHHHHH
Confidence 555567899999999999996654443 567778889888865 69999999997644 22211 1234556
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..|..|+. +||..+.|+.+|++.+...+-
T Consensus 146 esvGA~y~e------TSAk~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 146 ESVGALYME------TSAKDNVGISELFESLTAKMI 175 (218)
T ss_pred Hhhchhhee------cccccccCHHHHHHHHHHHHH
Confidence 666777776 899999999999998876543
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=119.80 Aligned_cols=142 Identities=21% Similarity=0.294 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc---------------cC--------------CCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS---------------KA--------------GSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~---------------~~--------------~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++++|+|+..+|||||+-.|+....... .. ...|.|..+....++. +
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-D 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-C
Confidence 4569999999999999999999865432100 00 0157888888888888 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
...++|+|+||+-| +..-.......+|+.|+|+|++.. ..+..++-+ .|....|. ..+
T Consensus 84 k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~~l 148 (428)
T COG5256 84 KYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---KQL 148 (428)
T ss_pred CceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---ceE
Confidence 88999999999655 333333345678999999999844 444444433 45555664 589
Q ss_pred EEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 142 ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
|+++||+|..+-+....++.+.. +..+++.+|-.
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 99999999987655677766665 66677777643
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=129.44 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc--cC------------------CCCCcceeEEEEEEEeeCCceEEEEeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS--KA------------------GSSGVTKTCEMQRTMLKAGQVVNVIDT 77 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--~~------------------~~~~~T~~~~~~~~~~~~~~~l~liDT 77 (311)
....+|+++|++|+|||||+++|+....... +. ...+.|.......+.+ ++..+.||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 4568999999999999999999863221100 00 0124555566667777 8899999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||+.++ ......++..+|++|+|+|++..+......+++.+.. . ..|+++++||+|....
T Consensus 88 PG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~----~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDF-----------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-R----DTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhH-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-c----CCCEEEEEECccccCC
Confidence 997652 2222334567899999999986676666666654443 2 2599999999997643
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=129.08 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc--cC------------------CCCCcceeEEEEEEEeeCCceEEEEeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS--KA------------------GSSGVTKTCEMQRTMLKAGQVVNVIDT 77 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--~~------------------~~~~~T~~~~~~~~~~~~~~~l~liDT 77 (311)
....+|+++|++|+|||||+++|+....... +. ...+.|.......+.+ ++..+++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 3568999999999999999999963221000 00 0123455555666777 8889999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||+.++. .....++..+|++|+|+|++.++......++..... . ..|+++++||+|....
T Consensus 87 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~----~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDFS-----------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-R----DTPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhhH-----------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-c----CCCEEEEEECCccccc
Confidence 9987632 122233556799999999987776666666655443 2 2599999999997654
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=104.96 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=110.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+++.|+|.+-+|||||+..++.... ...+.+.+.++.-...+++..|. ++.||||.| ++.+++.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkf--aelsdptvgvdffarlie~~pg~riklqlwdtag-----------qerfrsi 74 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKF--AELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-----------QERFRSI 74 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcc--cccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-----------hHHHHHH
Confidence 58899999999999999999987764 22222222222222223343333 789999999 5678888
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++++.-++++|+|++++-+-+. ..++.......+.+...-+.+|.+|+|+... ..+... ....+...
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--RqVt~E-------EaEklAa~ 145 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--RQVTAE-------EAEKLAAS 145 (213)
T ss_pred HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh--ccccHH-------HHHHHHHh
Confidence 8888999999999999996655444 4455555544442222235677899998744 222211 13556677
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
||-.++. +|++++.|+++.+..|.+-+
T Consensus 146 hgM~FVE------TSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 146 HGMAFVE------TSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cCceEEE------ecccCCCcHHHHHHHHHHHH
Confidence 7877776 88999999999998887644
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=106.69 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.....+.++|-.++|||||+|.+...... ..-+.|.....+.+.- +...+.+||.||- ..+...
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~tk-gnvtiklwD~gGq-----------~rfrsm 81 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQ-----------PRFRSM 81 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEecc-CceEEEEEecCCC-----------ccHHHH
Confidence 34578999999999999999988654331 1234566677777655 6679999999993 447888
Q ss_pred HHhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..+++++++|+||+|+.+ .++..-.++...|.+-- =...|++++.||.|..+. -.-.+.+.. ..+..
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~--l~gip~LVLGnK~d~~~A--L~~~~li~r------mgL~s 151 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPS--LTGIPLLVLGNKIDLPGA--LSKIALIER------MGLSS 151 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchh--hcCCcEEEecccccCccc--ccHHHHHHH------hCccc
Confidence 8889999999999999973 34433333333333211 123599999999998755 222222221 11111
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.....++.|. +|++...+++.++++|.++-
T Consensus 152 itdREvcC~s----iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 152 ITDREVCCFS----ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred cccceEEEEE----EEEcCCccHHHHHHHHHHHh
Confidence 1123344443 46666689999999998764
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=117.70 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
--+..+.-+|+++|.|++|||||+|.|+|... .....+.+|..+.-..+.+ +|-.++|+|+||+.........-..+
T Consensus 57 ~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s--eva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~ 133 (365)
T COG1163 57 AVKKSGDATVALVGFPSVGKSTLLNKLTNTKS--EVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQ 133 (365)
T ss_pred eEeccCCeEEEEEcCCCccHHHHHHHHhCCCc--cccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcce
Confidence 33455678999999999999999999999875 4445566777776666777 99999999999987643222211111
Q ss_pred HHHHHHhccCCccEEEEEEECC
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~ 115 (311)
+-...+.+|+|++|+|+.
T Consensus 134 ----vlsv~R~ADlIiiVld~~ 151 (365)
T COG1163 134 ----VLSVARNADLIIIVLDVF 151 (365)
T ss_pred ----eeeeeccCCEEEEEEecC
Confidence 223467789999999987
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=124.82 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM-----------------------------SKAGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|+.++|||||+.+|+...... ......+.|.......+.+ .
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 456999999999999999999886422100 0001246788888888887 8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CC------hhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FS------KEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
++.++|+||||+.+ +.......+..+|++|+|+|+... +. ...++.+..+.. .|. .++
T Consensus 84 ~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~i 148 (447)
T PLN00043 84 KYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQM 148 (447)
T ss_pred CEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---CcE
Confidence 88999999999543 444444556788999999999843 32 333444433332 332 368
Q ss_pred EEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHH
Q 021534 142 IVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 142 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~ 199 (311)
|+++||+|.... ....+.+.+.+ +..++...|. .+++ +|+.++.|+.
T Consensus 149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g~~~~~~~~ip------iSa~~G~ni~ 202 (447)
T PLN00043 149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVGYNPDKIPFVP------ISGFEGDNMI 202 (447)
T ss_pred EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------Eecccccccc
Confidence 999999997622 11334433443 6666666552 2344 5666666653
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-14 Score=109.84 Aligned_cols=166 Identities=12% Similarity=0.054 Sum_probs=111.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
..+...+.+|+++|--||||||+++.|--..... ..+|..+.+..+.+ .+..+++||..|-. .
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-----tvPTiGfnVE~v~y-kn~~f~vWDvGGq~-----------k 73 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TVPTIGFNVETVEY-KNISFTVWDVGGQE-----------K 73 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCccc-----CCCccccceeEEEE-cceEEEEEecCCCc-----------c
Confidence 3456678999999999999999999885544322 24566677777777 78899999999943 3
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
++..+..+++..+++|||+|.+++..-.+ .++...+... .-...|+++..||.|+... .+..+.-+. .
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~--~l~~~~llv~aNKqD~~~a--ls~~ei~~~------L 143 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEP--ELRNAPLLVFANKQDLPGA--LSAAEITNK------L 143 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc--ccCCceEEEEechhhcccc--CCHHHHHhH------h
Confidence 66678888999999999999985433222 2333333211 1134599999999998766 333322221 1
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+-..++...+.. .++|.++.|+.+-++++.+.+.
T Consensus 144 ~l~~l~~~~w~iq----~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 144 GLHSLRSRNWHIQ----STCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred hhhccCCCCcEEe----eccccccccHHHHHHHHHHHHh
Confidence 1222223333332 2466778999999999988764
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-13 Score=116.17 Aligned_cols=190 Identities=14% Similarity=0.107 Sum_probs=110.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCC---cceeEEE---EEEEeeCC----ceE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK--------------AGSSG---VTKTCEM---QRTMLKAG----QVV 72 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~--------------~~~~~---~T~~~~~---~~~~~~~~----~~l 72 (311)
..+.+.|+|+|+.++|||||||++.+.-++|.. .+.+| +|++..+ ..+++... .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 346699999999999999999999998433322 22345 6666666 44444333 589
Q ss_pred EEEeCCCCCCCCCChHHHHHH--------------HHHH----HHhccC-CccEEEEEE-ECC------CCCChhHHHHH
Q 021534 73 NVIDTPGLFDSSADPEFVSKE--------------IVKC----IGMAKD-GIHAVLLVF-SIR------NRFSKEEGAAI 126 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~--------------~~~~----~~~~~~-~~d~il~v~-d~~------~~~~~~~~~~l 126 (311)
++|||+||.+.......-.+. |..+ ....+. .+|..|+|. |.+ +.+...+..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998765332211111 0000 011123 678888888 774 35666778888
Q ss_pred HHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 127 HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 127 ~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..|++. .+|+++|+|+.|-..+ .... . ...+-.+.+.++.+. + +.......+..+++.+.
T Consensus 174 ~eLk~~-----~kPfiivlN~~dp~~~--et~~-l--------~~~l~eky~vpvl~v-~---c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 174 EELKEL-----NKPFIILLNSTHPYHP--ETEA-L--------RQELEEKYDVPVLAM-D---VESMRESDILSVLEEVL 233 (492)
T ss_pred HHHHhc-----CCCEEEEEECcCCCCc--hhHH-H--------HHHHHHHhCCceEEE-E---HHHcCHHHHHHHHHHHH
Confidence 888873 3699999999994433 1111 1 122334445554442 2 23344456666666554
Q ss_pred HHHHHcCCCCCcHHHHHHHH
Q 021534 207 SVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (311)
--.+-.....+.+..+..+.
T Consensus 234 ~EFPv~Ei~~~~P~Wve~L~ 253 (492)
T TIGR02836 234 YEFPILEINIDLPSWVEVLD 253 (492)
T ss_pred hcCCceEEEeeCchHHHhcC
Confidence 33333333334444444443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-12 Score=115.38 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML--------------------KA---GQVVNVIDT 77 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~l~liDT 77 (311)
++|+++|.||+|||||+|+|++... .....+++|.......... .+ ...+.+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~--~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV--EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc--cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5899999999999999999999865 3234456665555543221 01 246889999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
||+.........+...+. ..++.+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL----~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFL----DDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHH----HHHHHCCEEEEEEeCC
Confidence 998753222222333332 2356679999999986
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-13 Score=114.89 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=56.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------------CCceEEEEeCCC
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------------AGQVVNVIDTPG 79 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------------~~~~l~liDTPG 79 (311)
|+++|.||+|||||+|+|++... .....+.+|.........+. ....+.||||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~--~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV--EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC--cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999999875 22334455555444332210 124799999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
+.........+...+ ...++.+|++++|+|++
T Consensus 79 lv~ga~~~~glg~~f----L~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKF----LDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHH----HHHHHHCCEEEEEEeCC
Confidence 864221112222222 23366779999999986
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=98.12 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEE--EEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQR--TMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~--~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
++++++|+.|+|||.|+..+..... ... .+.|..+.... +.. .+ .++.||||.| ++.+++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-kDd---ssHTiGveFgSrIinV-GgK~vKLQIWDTAG-----------QErFRS 73 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-KDD---SSHTIGVEFGSRIVNV-GGKTVKLQIWDTAG-----------QERFRS 73 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-ccc---ccceeeeeecceeeee-cCcEEEEEEeeccc-----------HHHHHH
Confidence 7899999999999999999876543 222 23344333332 222 33 3889999999 677888
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++.+.++|.|++++-+-+. ..||.-++.+..+. .-++++.||.|+-.. ..+. +.+...
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~--R~Vt----------flEAs~ 139 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPE--REVT----------FLEASR 139 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChh--hhhh----------HHHHHh
Confidence 88899999999999999986655444 34555556554432 246777899997644 2221 122222
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.|......| ..+|+.+++++++.+-...
T Consensus 140 FaqEnel~f---lETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 140 FAQENELMF---LETSALTGENVEEAFLKCA 167 (214)
T ss_pred hhcccceee---eeecccccccHHHHHHHHH
Confidence 233222222 2368888999988765443
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-12 Score=115.06 Aligned_cols=122 Identities=21% Similarity=0.255 Sum_probs=89.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC-----------------------------------------cce
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG-----------------------------------------VTK 57 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~-----------------------------------------~T~ 57 (311)
..-+|++.|.+++||||+||+++...++|.+..+.. .+-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 457999999999999999999999988776544300 011
Q ss_pred eEEEEEEEeeCC------ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHH
Q 021534 58 TCEMQRTMLKAG------QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILES 131 (311)
Q Consensus 58 ~~~~~~~~~~~~------~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~ 131 (311)
......+.|+++ ..+.++|.||++-. .+..+|+...+..+|++|||+.+.+-++..+..++..+.+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc
Confidence 111222444333 27899999998853 3456666677888999999999987899888888877665
Q ss_pred HhCCCccCeEEEEEeccCCCCC
Q 021534 132 LFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 132 ~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
. ..+++++.||||...+
T Consensus 260 ~-----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 E-----KPNIFILNNKWDASAS 276 (749)
T ss_pred c-----CCcEEEEechhhhhcc
Confidence 3 2478888999997654
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=111.39 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
||+++|+.|+||||..+.+++... |......+.|..+....+.......+.|||.||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 689999999999999999997653 23344567888888888876356699999999987643210 00011122
Q ss_pred cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.+++++|||+|+. ..+...-..+...+..+.......++.+++.|+|++.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 67789999999998 44433333333344433322334589999999998865
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-12 Score=104.77 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=74.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+...|+++|.+|+|||||+|.|++...........+ +. ..... .+..+.++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i----~i~~~-~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI----TVVTG-KKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE----EEEec-CCceEEEEeCCchH----------HHHHH
Confidence 34458899999999999999999987632111111112 11 11122 67789999999832 11222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCC
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELED 153 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~ 153 (311)
. ...+|++++|+|++..+...+..++..+... | .| +++|+||+|.+..
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCCc
Confidence 2 3457999999999877777777777777653 2 35 5569999998744
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-13 Score=108.08 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
...|+++|++|+|||+|+..|.......+..+ ..... .+.+....+..+.|||+||+...+ ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS---~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~- 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS---MENNI-AYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL- 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------SSEEE-ECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc---ccCCc-eEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh-
Confidence 46899999999999999999987653222221 11111 111111145689999999987632 1121110
Q ss_pred hccCCccEEEEEEECCCCCChh----HHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE----EGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~----~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+.+.+.+||||+|++ .+... ...+...|....-.....|++++.||.|+...
T Consensus 71 ~~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 KYLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hchhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1245679999999987 22222 22333333332222234599999999998754
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-13 Score=102.86 Aligned_cols=170 Identities=13% Similarity=0.097 Sum_probs=112.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccC---CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKA---GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~---~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.....|+++|.-++|||||+-++--...-..+. +...+|......++.+ .+..+.+||.-| ++..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgG-----------Qe~l 82 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGG-----------QESL 82 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCC-----------hHHH
Confidence 455889999999999999998763221101111 2234677777788888 788999999988 4557
Q ss_pred HHHHHhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+.+..+|..+|++|||+|+++ ++......+-..+..-.- ...|++++.||-|+-.. ....+...- +.
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~--~~~~El~~~-----~~- 152 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNA--MEAAELDGV-----FG- 152 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhh--hhHHHHHHH-----hh-
Confidence 7777788888999999999984 444433333333332211 12499999999997655 333322111 12
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
..+..+.+..+|. ++|+.++.|+++-+.|+...++.+
T Consensus 153 ~~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 153 LAELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence 1233344444432 379999999999999999888765
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=93.96 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=106.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++.+|+.+|-.++||||++..|.-... ....+|+...+..+.+ .+..+++||..| +..|+.
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGG-----------qd~iRp 76 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGG-----------QDKIRP 76 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccC-----------chhhhH
Confidence 45579999999999999999988854332 1123455666666777 788999999999 345888
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCcc--CeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS--DYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~--~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~ 173 (311)
.|..++++..++|||+|..++-.-++ .-..+....++... .+++++.||-|+... ....+.+++.- .
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~ee--Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL------e-- 146 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEE--ARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL------E-- 146 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHH--HHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc------c--
Confidence 99999999999999999874422111 22234444444222 378888999998755 11334444432 1
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.-+.+.++ .++++.++.++.+-+.++.+.+
T Consensus 147 -~~r~~~W~v----qp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 -RIRDRNWYV----QPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred -cccCCccEe----eccccccchhHHHHHHHHHhhc
Confidence 112444444 2356667788888888877654
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=128.81 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=83.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEee---------CCceEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLK---------AGQVVN 73 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~---------~~~~l~ 73 (311)
.+...+|+++|+.++|||||+++|++......... ..+.|.......+.|. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45678999999999999999999987543111000 0233444333344442 155799
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
|+||||+.+ +...+..++..+|++|+|+|+..++...+..++..+... ..|+++++||+|..
T Consensus 96 liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 999999766 222334456778999999999888888887777766652 24899999999986
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=104.41 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|.+|+|||+|...+++... .....+...+.......+.- ....+.|+||+|... +.....
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~-~~~~l~ilDt~g~~~-----------~~~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDG-EVCMLEILDTAGQEE-----------FSAMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECC-EEEEEEEEcCCCccc-----------ChHHHH
Confidence 47999999999999999988887664 22222222222222222221 334788999999433 333333
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++...|++++|++++++-+-.+ ..+...+....+.+. .|+++|.||+|+... ..+... .-..+...++
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~-~PivlVGNK~Dl~~~--R~V~~e-------eg~~la~~~~ 139 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDD-VPIILVGNKCDLERE--RQVSEE-------EGKALARSWG 139 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCC-CCEEEEEEcccchhc--cccCHH-------HHHHHHHhcC
Confidence 45677899999999986665555 344455544334322 599999999998753 222111 1233445555
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +||....++++++..+...+..
T Consensus 140 ~~f~E------~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIE------TSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcEEE------eeccCCcCHHHHHHHHHHHHHh
Confidence 55554 6777778899999888876644
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-13 Score=96.21 Aligned_cols=142 Identities=20% Similarity=0.269 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+++|..|+|||||+++|-|....... |..+ +| ++. ..|||||-+-. +....+.+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQAv-----e~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQAV-----EF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------ccee-----ec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 58999999999999999999998753221 2222 22 111 16999995531 2334444555
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
....+|+++||..++++-+.-.-.++. . ..+|+|=|+||.|+.++ ..+.. .+.++...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~~----~----~~k~vIgvVTK~DLaed--~dI~~---------~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFLD----I----GVKKVIGVVTKADLAED--ADISL---------VKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCCccccc----c----cccceEEEEecccccch--HhHHH---------HHHHHHHcCCc
Confidence 567889999999887553332222222 1 22479999999998866 44432 34455555644
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++. .|+...+|+++|++.+..
T Consensus 122 ~IF~-----~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIFE-----TSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceEE-----EeccCcccHHHHHHHHHh
Confidence 3331 566777999999998865
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=127.50 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=83.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEee--------------
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLK-------------- 67 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~-------------- 67 (311)
......+|+|+|+.++|||||+++|+.......... ..+.|.......+.|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 345678999999999999999999986543111100 1234444444444442
Q ss_pred -CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 68 -AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 68 -~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
.+..++||||||+.| +......++..+|++|+|+|+..++...+...++.+... ..|+++++|
T Consensus 95 ~~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iN 158 (843)
T PLN00116 95 GNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN 158 (843)
T ss_pred CCceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEE
Confidence 155789999999766 333334445678999999999888887777777665542 258999999
Q ss_pred ccCCC
Q 021534 147 GGDEL 151 (311)
Q Consensus 147 k~D~~ 151 (311)
|+|..
T Consensus 159 K~D~~ 163 (843)
T PLN00116 159 KMDRC 163 (843)
T ss_pred CCccc
Confidence 99987
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=97.23 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=103.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
++....++|+++|-.|+|||||+..|.+++... ...|..+....+.+...-.+++||..|- +.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~~g~f~LnvwDiGGq-----------r~I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEYDGTFHLNVWDIGGQ-----------RGI 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEeecCcEEEEEEecCCc-----------ccc
Confidence 455678999999999999999999999988622 2234444555555534468999999983 448
Q ss_pred HHHHHhccCCccEEEEEEECCCC--CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNR--FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+..|+.++..+|++|||+|.++. +........+++....- +..|+.+.-||-|++.. ...++.... . .+.
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdllta--a~~eeia~k-l--nl~- 147 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTA--AKVEEIALK-L--NLA- 147 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhh--cchHHHHHh-c--chh-
Confidence 88899999999999999997632 33223344444433221 22489999999998855 333332221 0 011
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
....+...+.. +|+.+..++..-.+++..
T Consensus 148 ---~lrdRswhIq~---csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 148 ---GLRDRSWHIQE---CSALSLEGSTDGSDWVQS 176 (185)
T ss_pred ---hhhhceEEeee---CccccccCccCcchhhhc
Confidence 11233333333 355556666666666654
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=123.68 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=78.5
Q ss_pred EcCCCCcHHHHHHHHhCCccccccC----------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH
Q 021534 26 VGRTGNGKSATANSILGKKAFMSKA----------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 26 ~G~~g~GKSSlin~l~g~~~~~~~~----------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~ 89 (311)
+|++|+|||||+++|+......... ...+.|.......+.+ .+..+++|||||..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 6999999999999996543211110 0145677777778888 8899999999997642
Q ss_pred HHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 90 VSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+..++..+|++++|+|++..........+..+... ..|+++|+||+|....
T Consensus 74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 12222335567999999999866666666666555432 2489999999997644
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=113.50 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTP 78 (311)
.......+|+++|.||+|||||+|+|++... .....+++|.......+.+.+. ..+.++|||
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 3445678999999999999999999999875 4445678888887777766322 258999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
|+.........+...+. ..++.+|++++|+|+.
T Consensus 94 GLv~ga~~g~gLg~~fL----~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFL----SHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHH----HHHHHCCEEEEEEeCC
Confidence 99854322233333333 3356679999999974
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=126.98 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccc--------------cccCCCCCcceeEEEE----EEEeeCCceEEEEeCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAF--------------MSKAGSSGVTKTCEMQ----RTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~--------------~~~~~~~~~T~~~~~~----~~~~~~~~~l~liDTPG 79 (311)
....+|+++|+.|+|||||+++|+..... .......+.|...... .+.+ .+..++||||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCC
Confidence 35689999999999999999999743110 0000012334443322 2444 677899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+.++. .....++..+|++|+|+|+.......+...+..+.+. ..|.++++||+|...
T Consensus 96 ~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred ccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 88742 1123345677999999999867766666666554432 237789999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-11 Score=104.28 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=69.2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHH-HHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI-LESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~nk 147 (311)
+..+.||||+|+.... .. + ...+|.+++|++.. ...+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~---~~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TA----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccch---hH----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 5688999999988531 11 2 22469999997622 2333333221 2221 24899999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHh-------cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQL-------CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
||+... ......... +...+.. +..+++. +|+.++.|+++|++.|.++.+. .++.+
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~------vSA~~g~GIdeL~~~I~~~~~~----l~~sg 266 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLT------CSALEGEGIDEIWQAIEDHRAA----LTASG 266 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEE------EECCCCCCHHHHHHHHHHHHHH----hccCC
Confidence 998865 333333222 3333332 1234444 6888899999999999998753 45555
Q ss_pred HHHHH
Q 021534 221 IFAEL 225 (311)
Q Consensus 221 ~~~~~ 225 (311)
.+.+.
T Consensus 267 ~l~~~ 271 (332)
T PRK09435 267 EFAAR 271 (332)
T ss_pred hHHHH
Confidence 55443
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-13 Score=100.47 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-C-----C----ceEEEEeCCCCCCCCCChHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-A-----G----QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~-----~----~~l~liDTPG~~~~~~~~~~~ 90 (311)
++.+.+|.+|+|||||+...+....- .... ..+.++.....+.+. . | ..+.||||.|
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~-~qFI-sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG----------- 76 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFN-TQFI-STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG----------- 76 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCccc-ceeE-EEeecccccceEEEeccCCCCCCcceEEEEeeecccc-----------
Confidence 56788999999999999877655431 1100 011122222222221 0 1 1578999999
Q ss_pred HHHHHHHHHhccCCccEEEEEEECCCCCC-hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 91 SKEIVKCIGMAKDGIHAVLLVFSIRNRFS-KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
++++++....+++.+-++++++|.++.-+ .+-+.|+..|+.+.-. ...-+++..||+|+.+. ..+.+. .
T Consensus 77 QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~--R~Vs~~-------q 146 (219)
T KOG0081|consen 77 QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQ--RVVSED-------Q 146 (219)
T ss_pred HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhh--hhhhHH-------H
Confidence 56677777777888999999999983332 3346667766643321 11348999999997654 333321 2
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+..+.+.+|+. +||-++.+++..++.+..++
T Consensus 147 a~~La~kyglPYfE------TSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 147 AAALADKYGLPYFE------TSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHHhCCCeee------eccccCcCHHHHHHHHHHHH
Confidence 46788888999887 66666777776666655544
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=109.37 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=63.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc----------------eEEEEeCCCCCCCCCC
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ----------------VVNVIDTPGLFDSSAD 86 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~----------------~l~liDTPG~~~~~~~ 86 (311)
|+++|.||+|||||+|+|++... .....+++|.......+.+.+.+ .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999999886 33455778878777777663221 4999999999864322
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
...+...+.. .++.+|++++|+|+.
T Consensus 79 ~~glg~~fL~----~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLS----HIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHH----HHHhCCEEEEEEeCc
Confidence 2333333332 356789999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=100.24 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
--++++++|..++||||+|.+.+..-. +........+..-...+... .+..+.+|||.| .+++...
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif--TkdykktIgvdflerqi~v~~Edvr~mlWdtag-----------qeEfDaI 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG-----------QEEFDAI 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc--ccccccccchhhhhHHHHhhHHHHHHHHHHhcc-----------chhHHHH
Confidence 458999999999999999999885432 22222222222222222221 345778999999 3445555
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++++.+.++|++.+++.+-+. ..+-+.+.+-++. .|.++|-||+|++++ ..+..- ....+...
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved--s~~~~~-------evE~lak~ 153 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED--SQMDKG-------EVEGLAKK 153 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh--hhcchH-------HHHHHHHH
Confidence 5667999999999999987766554 4555566665554 699999999999876 333221 13445555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+.+++. +|.+..-++...+..+.+
T Consensus 154 l~~RlyR------tSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 154 LHKRLYR------TSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred hhhhhhh------hhhhhhhhhHHHHHHHHH
Confidence 5566655 677777777777776654
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-12 Score=106.67 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=74.4
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.+|||||....... ......+.+.+.... +++++||+|+++..+..+.....++....-.....|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 36899999996553211 222333333333222 799999999986566666444433321110112359999999999
Q ss_pred CCCCChhcHHHHhhhcCC-------------------chHHHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 150 ELEDNDETLEDYLGRECP-------------------KPLKEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.... ............ ..+...+...+ .++++ .|+.++.++++|+++|.+.
T Consensus 174 ~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~------iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 174 LLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIP------VSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred hcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEE------EECCCCcCHHHHHHHHHHH
Confidence 8866 333222221000 01112223333 23344 5677889999999999988
Q ss_pred HHH
Q 021534 209 IVQ 211 (311)
Q Consensus 209 ~~~ 211 (311)
++.
T Consensus 246 l~~ 248 (253)
T PRK13768 246 FCG 248 (253)
T ss_pred cCC
Confidence 754
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-12 Score=110.40 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTPGLFDSS 84 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTPG~~~~~ 84 (311)
++|+++|.||+|||||+|+|++... .....+++|.......+.+.+. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6899999999999999999999874 3345577887777666655222 258999999998643
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
.....+...+. ..++.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL----~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFL----ANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHH----HHHHhCCEEEEEEeCC
Confidence 22233333333 3356789999999984
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=106.97 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=105.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.+.|+|+|.|||||||||++|++...++.. ....|.+........+.|..+.+.||-||.+ .-...+...|...+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAFQATL 252 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHHHHHH
Confidence 4489999999999999999999987764433 2344555555555565788999999999986 22233444444444
Q ss_pred HhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCC---ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKK---ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~---~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.. ...+|+++-|+|++++.-...+ ..+..+.. .|-. ...+++=|-||+|..+. . ...
T Consensus 253 ee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~~--~-----~e~---------- 313 (410)
T KOG0410|consen 253 EE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEED--E-----VEE---------- 313 (410)
T ss_pred HH-HhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhccccccccc--c-----Ccc----------
Confidence 32 3457999999999988766654 44445554 3331 12246667777775433 1 110
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+. ++...+|+.++.|.+++++.+...+.
T Consensus 314 E~--------n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 EK--------NLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cc--------CCccccccccCccHHHHHHHHHHHhh
Confidence 00 01123688999999999999887654
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=117.42 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=92.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC----------------CCCcceeEEEEEEEeeCC-ceEEEEeCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG----------------SSGVTKTCEMQRTMLKAG-QVVNVIDTPG 79 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~----------------~~~~T~~~~~~~~~~~~~-~~l~liDTPG 79 (311)
.....+|+++||..+|||||..+|+-.....+..+ ..|.|.......+.| .+ ..++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 45679999999999999999999865443222110 146888888889999 75 9999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.|+. ..+..+++-+|+++.|+|+...........++...+.. .|.++++||+|.+..
T Consensus 86 HVDFt-----------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFT-----------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYG-----VPRILFVNKMDRLGA 143 (697)
T ss_pred ccccH-----------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcC-----CCeEEEEECcccccc
Confidence 99953 22233345569999999999888888888887777632 489999999998755
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-10 Score=95.30 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=69.8
Q ss_pred eEEEEeCCCCCCC---CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHH--HHHHHHHHhCCCccCeEEEEE
Q 021534 71 VVNVIDTPGLFDS---SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGA--AIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 71 ~l~liDTPG~~~~---~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~--~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+||||||-... +.+..-|.+ .+.. ..+.+++||+|.. |-+..... .+-..+.+.-+ ...|+|+|+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte----~las--s~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyk-tklp~ivvf 188 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITE----TLAS--SFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYK-TKLPFIVVF 188 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHh----hHhh--cCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHh-ccCCeEEEE
Confidence 5889999996431 222222222 2222 2468999999976 32222211 11111221111 234999999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEE------------Eec---CCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV------------LFD---NKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~f~---~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
||+|..+. ....+|+... ..++..+......|+ .|. ....+|+.+|.|.++++..|.+.+.
T Consensus 189 NK~Dv~d~--~fa~eWm~Df--E~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 189 NKTDVSDS--EFALEWMTDF--EAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred eccccccc--HHHHHHHHHH--HHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 99998877 5555555541 112222221111100 011 1133678888999999999988876
Q ss_pred H
Q 021534 211 Q 211 (311)
Q Consensus 211 ~ 211 (311)
+
T Consensus 265 E 265 (366)
T KOG1532|consen 265 E 265 (366)
T ss_pred H
Confidence 5
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=107.49 Aligned_cols=159 Identities=21% Similarity=0.328 Sum_probs=117.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccc-cccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAF-MSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.|+.+|+--.|||||+.+++|...- .......|.|.+..++.... .+..+.+||+||+.+ +.+.+-.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 5788999999999999999987531 11223468999999999988 677999999999765 4444444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
....+|..++|+++++++.....+.+..|. ++|. ++.++|+||+|..+. ..+++...+ +.........+
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi---~~giivltk~D~~d~--~r~e~~i~~-----Il~~l~l~~~~ 138 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGI---KNGIIVLTKADRVDE--ARIEQKIKQ-----ILADLSLANAK 138 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCC---CceEEEEeccccccH--HHHHHHHHH-----HHhhccccccc
Confidence 567889999999998888888877776555 4554 578999999998876 555544443 22211111222
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+ ..+|+.+++|+++|.+.|.++.
T Consensus 139 i------~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 139 I------FKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred c------cccccccCCCHHHHHHHHHHhh
Confidence 2 3478889999999999999887
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-10 Score=94.73 Aligned_cols=129 Identities=16% Similarity=0.010 Sum_probs=81.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC-ccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK-KAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~-~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+...|+|+|++++|||||+|.|+|. +.|..+....++|..+-.+...+. .+..+.++||||+++...........+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 35578999999999999999999998 356666666778887776665542 257899999999998765431111112
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHH-----------hCCCccCeEEEEEeccCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESL-----------FGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~-----------~~~~~~~~~ilv~nk~D~~ 151 (311)
..... --++++||.++.. .. ..+...+..+.+. ........+++|+--++..
T Consensus 85 ~~l~~---llss~~i~n~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~ 147 (224)
T cd01851 85 FALAT---LLSSVLIYNSWET-IL-GDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLD 147 (224)
T ss_pred HHHHH---HHhCEEEEeccCc-cc-HHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCC
Confidence 22111 1348999998875 22 2333333333331 1122333577777766653
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-12 Score=113.18 Aligned_cols=173 Identities=15% Similarity=0.218 Sum_probs=113.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAG-SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...||+++|..|+||||||=+|+.....+..+. .+..+......+ ......|+||+.-.+ ...+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP----e~vpt~ivD~ss~~~-----------~~~~ 72 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP----ENVPTSIVDTSSDSD-----------DRLC 72 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc----CcCceEEEecccccc-----------hhHH
Confidence 459999999999999999999998875333222 123333322221 445689999984222 1112
Q ss_pred HHhccCCccEEEEEEECCCC--CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNR--FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+...++++|+|++|...++. +......||-.++..+|+....|+|+|.||+|.......+++.. +..++.
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pim~ 144 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPIMI 144 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHHHH
Confidence 22335567999999987743 44445788999999999888889999999999886632322220 111221
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCc
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYT 218 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 218 (311)
.+.....|..+||++..++.+++-.-.+.+-..-++.|.
T Consensus 145 ----~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyd 183 (625)
T KOG1707|consen 145 ----AFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYD 183 (625)
T ss_pred ----HhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccc
Confidence 222345556689999999999988877765544555554
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-12 Score=110.98 Aligned_cols=169 Identities=23% Similarity=0.291 Sum_probs=110.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-------------cCCCCCcceeEEEEEEEee----CCceEEEEeCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS-------------KAGSSGVTKTCEMQRTMLK----AGQVVNVIDTP 78 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-------------~~~~~~~T~~~~~~~~~~~----~~~~l~liDTP 78 (311)
+.....+..++.|-..|||||..+|+....-.+ .....|.|...+...+.+. +...+++||||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 445668899999999999999999875432100 0112577887777766663 22489999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcH
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETL 158 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~ 158 (311)
|+.|+.- +..+. +.-+.+.|+|+|++.+.........-.. +.. .--++.|+||+|+...+-+.+
T Consensus 85 GHVDFsY-------EVSRS----LAACEGalLvVDAsQGveAQTlAN~YlA---le~--~LeIiPViNKIDLP~Adperv 148 (603)
T COG0481 85 GHVDFSY-------EVSRS----LAACEGALLVVDASQGVEAQTLANVYLA---LEN--NLEIIPVLNKIDLPAADPERV 148 (603)
T ss_pred CccceEE-------Eehhh----HhhCCCcEEEEECccchHHHHHHHHHHH---HHc--CcEEEEeeecccCCCCCHHHH
Confidence 9998642 12222 3345899999999977766554333222 222 136999999999765422332
Q ss_pred HHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 159 EDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
... +...+..-...... +||+++.|++++++.|.+.++...+
T Consensus 149 k~e--------Ie~~iGid~~dav~------~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 149 KQE--------IEDIIGIDASDAVL------VSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHH--------HHHHhCCCcchhee------EecccCCCHHHHHHHHHhhCCCCCC
Confidence 222 34444332222333 6999999999999999988876443
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=103.30 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=107.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc---------ccC---C-------------------CCCcceeEEEEEEEe
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM---------SKA---G-------------------SSGVTKTCEMQRTML 66 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~---------~~~---~-------------------~~~~T~~~~~~~~~~ 66 (311)
...++++-+|...-||||||-+|+..+... ..+ . ..|.|.++.+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999998754310 000 0 057899998887777
Q ss_pred eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 67 ~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.+.|.||||+. ++.+-+..-..-+|+.|+++|+...+-... .....+..++|- +++++.+|
T Consensus 84 -~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QT-rRHs~I~sLLGI---rhvvvAVN 147 (431)
T COG2895 84 -EKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQT-RRHSFIASLLGI---RHVVVAVN 147 (431)
T ss_pred -ccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHh-HHHHHHHHHhCC---cEEEEEEe
Confidence 88999999999943 233222223345799999999986665544 334566677775 78999999
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQV 198 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i 198 (311)
|+|+++-+.+..++.... +..+....+.....| .+.||+.+.|+
T Consensus 148 KmDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~~---IPiSAl~GDNV 191 (431)
T COG2895 148 KMDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVRF---IPISALLGDNV 191 (431)
T ss_pred eecccccCHHHHHHHHHH-----HHHHHHHcCCCcceE---EechhccCCcc
Confidence 999997665677766665 566666666432211 22555555443
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-11 Score=103.98 Aligned_cols=170 Identities=16% Similarity=0.229 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-ccc-----------cC--CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-FMS-----------KA--GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~-----------~~--~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
...+|+++.+...|||||+..|+.++. |.. .. -..|.|.-.....+.| ++..++||||||+-|+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence 347999999999999999999987653 111 00 1147788777778888 99999999999999976
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+.-+ +. +.-+|++++++|+.++.-+..+..++...+.. -+-|+|+||+|..... -++.+.+
T Consensus 83 GEVE-------Rv----l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~g-----L~PIVVvNKiDrp~Ar---p~~Vvd~ 143 (603)
T COG1217 83 GEVE-------RV----LSMVDGVLLLVDASEGPMPQTRFVLKKALALG-----LKPIVVINKIDRPDAR---PDEVVDE 143 (603)
T ss_pred chhh-------hh----hhhcceEEEEEEcccCCCCchhhhHHHHHHcC-----CCcEEEEeCCCCCCCC---HHHHHHH
Confidence 5422 22 33459999999999777777777666544421 2578899999976441 1122222
Q ss_pred cCCchHHHHHHhcC-------CcEEEecCCch----hhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 165 ECPKPLKEILQLCD-------NRCVLFDNKTK----DAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 165 ~~~~~~~~~~~~~~-------~~~~~f~~~~~----~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.-.++...+ .++.+-+.... .......++..|++.|.++++...
T Consensus 144 -----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 144 -----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred -----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 222333322 23322111111 111223568899999999887543
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=119.49 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=79.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEe--e-CCceEEEEeCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTML--K-AGQVVNVIDTPG 79 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~--~-~~~~l~liDTPG 79 (311)
.+...+|+++|+.++|||||+++|+.......... ..+.|.......+.| . .+..++|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 34568999999999999999999975432111000 013344444333333 1 356789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+.++ ......++..+|++|+|+|+.......+...+..+.+. + .|.++++||+|..
T Consensus 97 ~~df-----------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDF-----------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred ccCh-----------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 8873 22233345667999999999877777777777665442 2 3679999999976
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-12 Score=92.72 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=103.4
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
++|.+++|||.|+-++-....+ .+.--..+.++.....+.. ++ ..+.+|||.| ++++++....++
T Consensus 2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~-~~~kvklqiwdtag-----------qerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAG-----------QERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceecc-CCcEEEEEEeeccc-----------hHHHhhhhHhhh
Confidence 6899999999987443222211 1110011122222222333 33 3789999999 566888888889
Q ss_pred CCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
+.+|+++++.|+.++.+-.. ..|+..+.++....+ .++++.||+|+..+ ..+. ..+=..+.+..+.++
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e--r~v~-------~ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE--RAVK-------RDDGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh--hccc-------cchHHHHHHHHCCCc
Confidence 99999999999986666554 567777877654433 68999999998654 2221 112345666678777
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.. +|++++-+++..+-.|.+-+.+
T Consensus 138 me------tsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 138 ME------TSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred ee------ccccccccHhHHHHHHHHHHHH
Confidence 76 8999999999888887765544
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=111.45 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=113.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLF 81 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~ 81 (311)
..+.++++|+..+|||-|+..|.+.++ ......|.|..+....+... .-..+.+|||||+.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNV--qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNV--QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccc--ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 347799999999999999999998876 33333455544433332210 12378999999966
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCC----hhc
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN----DET 157 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~----~~~ 157 (311)
+ |...-+.....||.+|+|+|+.|++.+.....+++|+... .|+||++||+|.+... ...
T Consensus 552 s-----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk-----tpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 552 S-----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK-----TPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred h-----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC-----CCeEEeehhhhhhcccccCCCch
Confidence 5 3333333455689999999999999999999999988643 4899999999987431 122
Q ss_pred HHHHhhhc-------CCchHHHHHHhc---CCc-EEEecCC--------chhhhhhHHHHHHHHHHHHHHHH
Q 021534 158 LEDYLGRE-------CPKPLKEILQLC---DNR-CVLFDNK--------TKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 158 ~~~~~~~~-------~~~~~~~~~~~~---~~~-~~~f~~~--------~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.+.+... +...+..++-.+ |-. -.+|.|. .++||.++.|+.+|+-+|.++..
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 22222211 111123332222 211 1123332 56899999999999999988764
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.3e-11 Score=106.95 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=98.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCCcceeEEEEEEE
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------------------KAGSSGVTKTCEMQRTM 65 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------------------~~~~~~~T~~~~~~~~~ 65 (311)
++....++++|+|+..+|||||+..|+..-..+. .....|+|..+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 4555789999999999999999998864321000 01115788888888887
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC-CCCC------hhHHHHHHHHHHHhCCCcc
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR-NRFS------KEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~-~~~~------~~~~~~l~~l~~~~~~~~~ 138 (311)
. ....++|+|+||+.|+. .-+......+|+.++|+|++ ..++ +..++....++. +|.
T Consensus 252 s-~~~~~tliDaPGhkdFi-----------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi--- 315 (603)
T KOG0458|consen 252 S-KSKIVTLIDAPGHKDFI-----------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI--- 315 (603)
T ss_pred c-CceeEEEecCCCccccc-----------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc---
Confidence 6 78899999999988752 11222345679999999987 2222 233555555554 553
Q ss_pred CeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH-HhcC
Q 021534 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCD 178 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 178 (311)
..+||++||+|.+.-....+++.... +...+ +.||
T Consensus 316 ~qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred ceEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 58999999999997766777766665 55555 5555
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-11 Score=96.01 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
...+|+++|.||+|||||+|+|.+.....++. .+++|+...... .+..+.|+||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence 45789999999999999999999987644433 456666654433 3456899999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-11 Score=91.77 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=103.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
...+|+++|--|+||||++-.+--..+. . .-+|.......+.+ .+.++.+||..|-.+ ++..|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-t----tkPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-T----TKPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-c----cCCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence 6689999999999999987655322221 1 11233333444555 778899999998554 66667
Q ss_pred HhccCCccEEEEEEECC--CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 99 GMAKDGIHAVLLVFSIR--NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
..++...|++|||+|.+ ++++..-..+..+|++---.+ ..++++.||.|.... ....+..... .+.++-.+
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~--~t~~E~~~~L---~l~~Lk~r 152 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGA--LTRSEVLKML---GLQKLKDR 152 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchhh--hhHHHHHHHh---ChHHHhhh
Confidence 77788999999999987 345544455555555322111 268888999997655 3433333321 12233222
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
. ..++ ..||.++.|+++.++|+.+.+..
T Consensus 153 ~-~~Iv------~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 153 I-WQIV------KTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred e-eEEE------eeccccccCCcHHHHHHHHHHhc
Confidence 1 1222 36888899999999999887643
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=91.34 Aligned_cols=114 Identities=19% Similarity=0.096 Sum_probs=75.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..+.||||||.. .+...+..++.++|++|+|+|++++.+-.+ ..++..+....+. ..|+++|.||+
T Consensus 29 v~l~iwDt~G~e-----------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQE-----------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChH-----------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECc
Confidence 478999999943 344455566889999999999985433222 3455555444433 35899999999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
|+.........+ ...+....+..++. +||.++.|+.+++++|.+.+++
T Consensus 96 DL~~~~~v~~~e---------~~~~~~~~~~~~~e------~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEE---------GMQKAQEYNTMFHE------TSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHH---------HHHHHHHcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 976431011111 22333334444443 7889999999999999988865
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=94.56 Aligned_cols=163 Identities=19% Similarity=0.124 Sum_probs=103.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCccee-EEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKT-CEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~-~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+++|||..++|||+|+-..+.. .|+....+ |.. --...+...++. .+.+|||.|-.|- ..++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~yvP---TVFdnys~~v~V~dg~~v~L~LwDTAGqedY--------DrlR- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEYVP---TVFDNYSANVTVDDGKPVELGLWDTAGQEDY--------DRLR- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccccC---eEEccceEEEEecCCCEEEEeeeecCCCccc--------cccc-
Confidence 489999999999999999777644 34444332 222 111122331143 6889999996653 1122
Q ss_pred HHHhccCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~~~ 169 (311)
..+++.+|+||.++++.++.+-. ...++-.++.+++. .|+|+|.+|.|+.++ ....+.+... ....
T Consensus 71 --plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~ 143 (198)
T KOG0393|consen 71 --PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQ 143 (198)
T ss_pred --ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC--HHHHHHHHhccCCcccHHH
Confidence 34799999999999988554444 35667777777743 699999999998754 3222222211 1223
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
...+....|. .|+. .|+.+..|+.+.++.....
T Consensus 144 g~~lA~~iga~~y~E------cSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 144 GLELAKEIGAVKYLE------CSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred HHHHHHHhCcceeee------ehhhhhCCcHHHHHHHHHH
Confidence 4455566563 3333 7888888888888765543
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-10 Score=81.80 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++-.++|.-|+|||.|+..++....... -+....++....-++. .|+ .+.||||.| +++++..
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmad--cphtigvefgtriiev-sgqkiklqiwdtag-----------qerfrav 76 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEV-SGQKIKLQIWDTAG-----------QERFRAV 76 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhc--CCcccceecceeEEEe-cCcEEEEEEeeccc-----------HHHHHHH
Confidence 47888999999999999999987765322 1222222233333444 343 789999999 5667777
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++++.+.+.|.|++.+.+-+. ..|+.-.+.+..+ ..-++++.||.|+-...+-..++ .+...+.
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~yee---------ak~faee 145 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYEE---------AKEFAEE 145 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHHH---------HHHHHhh
Confidence 7888999999999999985544333 3344444444332 22477889999965331122221 2333444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLS 203 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~ 203 (311)
.|--+.. .|+++++++++.+-
T Consensus 146 ngl~fle------~saktg~nvedafl 166 (215)
T KOG0097|consen 146 NGLMFLE------ASAKTGQNVEDAFL 166 (215)
T ss_pred cCeEEEE------ecccccCcHHHHHH
Confidence 3433333 57788888876553
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=96.16 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=45.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
...+|+|+|.||+|||||||+|+|.....++ ..+|+|...+...+ +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEe----CCCEEEEECcCC
Confidence 4579999999999999999999998765443 34677777665543 356899999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=112.38 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=77.0
Q ss_pred cHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC-----------------ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 32 GKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG-----------------QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 32 GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+||||+.+|.+.++ ......|.|.+...+.+.+... ..+.||||||+.+ +
T Consensus 473 ~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----------F 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----------F 539 (1049)
T ss_pred ccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------H
Confidence 39999999999887 4444568888888877766211 1389999999544 3
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
.......+..+|++++|+|+++.+...+...+..+... ..|+++|+||+|+..
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 32233346778999999999877888888877776653 248999999999864
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-10 Score=96.21 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-----------------CceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-----------------GQVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~~l~liDTPG~~~~ 83 (311)
++++++|.||+|||||+|+++.... ...+.|.+|.+.....+.... .-.+.++|.+|+.-.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 7899999999999999999998874 445667788877766544321 116889999998754
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
.-..+.+.+.+-+- ++.+|+|+.|+|..
T Consensus 81 As~GeGLGNkFL~~----IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDN----IREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHh----hhhcCeEEEEEEec
Confidence 33334445555443 45679999999875
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=94.22 Aligned_cols=173 Identities=19% Similarity=0.254 Sum_probs=111.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc---------ccccC-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA---------FMSKA-----GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~---------~~~~~-----~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+..+|+.+|+.+.|||||-.+|+..-. |.... -..|.|.......++. ..+.+..||+||+-|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 45669999999999999999999865311 11111 1146777776666666 788999999999654
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
++.+.|... ...|+.|+|+.+.+..-+..++-+-+.+. .|- ..+++++||+|++++ ..+-+.+
T Consensus 88 ------YvKNMItgA-----aqmDgAILVVsA~dGpmPqTrEHiLlarq-vGv---p~ivvflnK~Dmvdd--~ellelV 150 (394)
T COG0050 88 ------YVKNMITGA-----AQMDGAILVVAATDGPMPQTREHILLARQ-VGV---PYIVVFLNKVDMVDD--EELLELV 150 (394)
T ss_pred ------HHHHHhhhH-----HhcCccEEEEEcCCCCCCcchhhhhhhhh-cCC---cEEEEEEecccccCc--HHHHHHH
Confidence 233333332 24599999999886766666655544443 443 368888999999987 6666666
Q ss_pred hhcCCchHHHHHHhcCCc--EEEecCCch-----hhhhhHHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQLCDNR--CVLFDNKTK-----DAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~--~~~f~~~~~-----~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.. .+++++...+.+ ..++-.... ........+.+|++.+..+++.
T Consensus 151 em----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 151 EM----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HH----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 65 367788776533 111111111 1112345578888888877653
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-08 Score=87.79 Aligned_cols=130 Identities=17% Similarity=0.317 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEE------------Eee------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRT------------MLK------------------ 67 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~------------~~~------------------ 67 (311)
...+-|+++|.-+.|||||||.|+..+......++.++|........ ...
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 35688999999999999999999988753222223233322221110 000
Q ss_pred ------CC---ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCC
Q 021534 68 ------AG---QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKK 136 (311)
Q Consensus 68 ------~~---~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~ 136 (311)
.+ ..++||||||+.+.....-.-.-.+...+..+..++|.|++++|+. .+.-++ ..++..| .|.+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~aL---kG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDAL---KGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHHh---hCCc
Confidence 00 1689999999987432211111124444445577889999999986 544333 4444444 4443
Q ss_pred ccCeEEEEEeccCCCCC
Q 021534 137 ISDYMIVVFTGGDELED 153 (311)
Q Consensus 137 ~~~~~ilv~nk~D~~~~ 153 (311)
..+=+|+||.|.++.
T Consensus 212 --dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDT 226 (532)
T ss_pred --ceeEEEeccccccCH
Confidence 368899999999977
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-10 Score=95.04 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCCcceeEEEEEE--------------------Ee-----eCCce
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM-SKAGSSGVTKTCEMQRT--------------------ML-----KAGQV 71 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-~~~~~~~~T~~~~~~~~--------------------~~-----~~~~~ 71 (311)
....+|+++|+...|||||..+|+|--... +.....+.|....+... .. .--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 346999999999999999999999853210 00111122222222111 00 01247
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 72 VNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 72 l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
+.|||.||+. -+...+-+-..--|+.|+|+.++++ ..+...+-|-.| +..|- +++++|-||+|+
T Consensus 88 VSfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigi---k~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhcc---ceEEEEecccce
Confidence 8999999943 2222222222335999999999843 333344333332 33443 689999999999
Q ss_pred CCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 151 LEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+... ..++.|.+ +++.++-. +.++++ .||..+.|++.|++.|.+.++.
T Consensus 153 V~~E-~AlE~y~q------Ik~FvkGt~Ae~aPIIP------iSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 153 VSRE-RALENYEQ------IKEFVKGTVAENAPIIP------ISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred ecHH-HHHHHHHH------HHHHhcccccCCCceee------ehhhhccCHHHHHHHHHHhCCC
Confidence 8661 33444433 34444321 345665 8999999999999999998764
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-10 Score=93.66 Aligned_cols=164 Identities=20% Similarity=0.273 Sum_probs=100.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC--Cc-ccccc--CCCCCcceeEEEEEEEeeCC--------ceEEEEeCCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG--KK-AFMSK--AGSSGVTKTCEMQRTMLKAG--------QVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g--~~-~~~~~--~~~~~~T~~~~~~~~~~~~~--------~~l~liDTPG~~~~~~~ 86 (311)
+++|+++|+..+|||||..+|.. .+ .|... +...+.|.+.....+....+ ..+++||+||..+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 49999999999999999999843 22 12111 11235566655555443222 2669999999543
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCC--hhcHHHHhhh
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN--DETLEDYLGR 164 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~--~~~~~~~~~~ 164 (311)
+.+.+.....-+|..++|+|+..+......+.|-.-...| ++.++|+||+|.+.+. ...+++....
T Consensus 83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccchhhhhHHHHHHHH
Confidence 3333333344579999999998666666655554333333 4799999999988661 1223322222
Q ss_pred cCCchHHHHHHhcC----CcEEEecCCchhhhhhH----HHHHHHHHHHHHHHH
Q 021534 165 ECPKPLKEILQLCD----NRCVLFDNKTKDAAKRT----EQVGKLLSLVNSVIV 210 (311)
Q Consensus 165 ~~~~~~~~~~~~~~----~~~~~f~~~~~~sa~~~----~~i~~l~~~i~~~~~ 210 (311)
+++-++..+ .+++. .|+..+ ..+.+|.+.+...+-
T Consensus 151 -----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 151 -----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred -----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhhc
Confidence 333333322 33443 455555 788888888886553
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-10 Score=94.40 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=84.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC---hHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD---PEFVS 91 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~---~~~~~ 91 (311)
|....+.++++|.+|+|||||||.++......- ..+..+.|.....+. -+..+++||.||++.+... ..+..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHh
Confidence 456779999999999999999999988764322 222456666666555 4678999999996543211 11222
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.-...++... ...-.+++++|++-++...|...+.++.+. ..|+.+|+||+|...+
T Consensus 208 ~~t~~Y~leR-~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 208 KFTKSYLLER-ENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQKK 263 (320)
T ss_pred HhHHHHHHhh-hhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhhh
Confidence 2111222111 233456666788778888888888877763 2489999999997644
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=98.25 Aligned_cols=67 Identities=25% Similarity=0.389 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~ 89 (311)
...++|+|+|.||+|||||||+|+|.....+ ...+|+|...+... .+..+.||||||+..+...+++
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcHH
Confidence 3568999999999999999999999876444 33567787765433 3456899999999877654443
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=89.42 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
...|+++|.++||||+|+-.|.......+. +........+.+ +...+++||.||+.. .+..+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~-gs~~~~LVD~PGH~r-----------lR~kl~ 100 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRL-GSENVTLVDLPGHSR-----------LRRKLL 100 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEee-cCcceEEEeCCCcHH-----------HHHHHH
Confidence 368999999999999999877654321111 111222223333 555689999999653 444444
Q ss_pred hccC---CccEEEEEEECCCCCChhHHHH----HHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKD---GIHAVLLVFSIRNRFSKEEGAA----IHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~---~~d~il~v~d~~~~~~~~~~~~----l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+++ .+-+|+||+|.. -+..+-+.. ...+....+..-..|++++.||.|+...
T Consensus 101 e~~~~~~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHccccccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 4444 688999999986 333333333 3333332222223489999999998754
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-10 Score=88.84 Aligned_cols=60 Identities=32% Similarity=0.460 Sum_probs=43.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
..+..+++++|.+|+|||||+|+|++.... .....++.|....... + + ..+.||||||+.
T Consensus 80 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~--~-~-~~~~i~DtpG~~ 139 (141)
T cd01857 80 LKENATIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIF--L-T-PTITLCDCPGLV 139 (141)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEE--e-C-CCEEEEECCCcC
Confidence 334458999999999999999999998754 3333456666654433 3 2 368999999975
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-10 Score=94.72 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFM-------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
..+++++|.+|+|||||||+|++..... .....+++|.......+ +..+.||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 4689999999999999999999865322 22334567777665554 225899999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-11 Score=92.66 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
..++|+|++|||||||||+|++...+.++.. ...+|+....+.+ .....|||||||.++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--G
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCcccc
Confidence 7899999999999999999999855433221 1234555554443 33467999999877643
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-10 Score=89.73 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=44.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
....+|+++|.||+|||||+|+|++....... ..+++|....... .+..+.|+||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEVK----LDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEEE----ecCCEEEEECCCC
Confidence 35688999999999999999999998754432 2356676665543 2356999999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=94.82 Aligned_cols=65 Identities=28% Similarity=0.378 Sum_probs=48.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~ 87 (311)
...++++|+|.||+|||||+|+|++.....+ ...+++|...+...+ +..+.||||||+..+...+
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~----~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKL----SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEe----CCCEEEEECCCcccCCCCc
Confidence 3458999999999999999999999875444 334677776654332 3468999999997654433
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=93.70 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=83.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh--CCccccc------------cCCC------CCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSIL--GKKAFMS------------KAGS------SGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~--g~~~~~~------------~~~~------~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
...+.+++-+|.+|||||-..|+ |...-.. .+.| .|..+...+-.+.+ .+..++|+|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 34789999999999999987764 2221100 0011 34555666667777 89999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.|++.+ . +..+.-+|+.+.|+|+..++.+...++++. +++.+ .|++-.+||+|....
T Consensus 90 GHeDFSED-------T----YRtLtAvDsAvMVIDaAKGiE~qT~KLfeV-crlR~----iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSED-------T----YRTLTAVDSAVMVIDAAKGIEPQTLKLFEV-CRLRD----IPIFTFINKLDREGR 148 (528)
T ss_pred Cccccchh-------H----HHHHHhhheeeEEEecccCccHHHHHHHHH-HhhcC----CceEEEeeccccccC
Confidence 99997532 1 112334599999999988898888777653 44444 499999999997654
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-09 Score=94.96 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC---------------------------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS--------------------------------------------- 52 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~--------------------------------------------- 52 (311)
+.-++|+|+|...+||||.+..+.....||.+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 34589999999999999999999888887765543
Q ss_pred -------CCcceeEEEEEEEeeCCc---eEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh
Q 021534 53 -------SGVTKTCEMQRTMLKAGQ---VVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK 120 (311)
Q Consensus 53 -------~~~T~~~~~~~~~~~~~~---~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~ 120 (311)
.|+|+......... .|. +.++||.||+.++.. ...+.-+.|.+....+..++++||+|+.-+ .. .
T Consensus 386 RMr~sVr~GkTVSnEvIsltV-KGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SV-D 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNV-KGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SV-D 462 (980)
T ss_pred HHHhcccCCcccccceEEEee-cCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Cc-c
Confidence 45666666665555 443 778999999987642 223455667777777889999999999533 22 2
Q ss_pred hHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 121 EEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 121 ~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++.++--|-..+.+ .++..|+|+||.|+.+.
T Consensus 463 AERSnVTDLVsq~DP-~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDP-HGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhhHHHHHHhcCC-CCCeeEEEEeecchhhh
Confidence 233333333333433 44689999999998755
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-08 Score=87.42 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=59.1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||...... .+ ...+|.++++.+.. ...+..... ..+. ..|.++|+||+
T Consensus 126 g~D~viidT~G~~~~e~-------~i-------~~~aD~i~vv~~~~---~~~el~~~~--~~l~----~~~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV-------DI-------ANMADTFVVVTIPG---TGDDLQGIK--AGLM----EIADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhhh-------HH-------HHhhceEEEEecCC---ccHHHHHHH--HHHh----hhccEEEEEcc
Confidence 56889999999764210 11 23358888885432 222322211 1122 24789999999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
|.... ......... ....+..+... +..++++ +|+.++.|+++|+++|.+...
T Consensus 183 Dl~~~--~~~~~~~~~-~~~~l~~l~~~~~~~~~~v~~------iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 183 DGEGA--TNVTIARLM-LALALEEIRRREDGWRPPVLT------TSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cccch--hHHHHHHHH-HHHHHhhccccccCCCCCEEE------EEccCCCCHHHHHHHHHHHHH
Confidence 98755 221110000 00001111111 1223333 788899999999999988753
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=87.73 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
+..++++++|.+|+|||||+|+|++.... .....+++|.......+ . ..+.||||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~---~-~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKI---S-PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEe---c-CCEEEEECCCCC
Confidence 34579999999999999999999997753 22334567766665543 2 568999999973
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-09 Score=88.59 Aligned_cols=127 Identities=19% Similarity=0.282 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|.+|+||||+=..++... ........|.|.++...++.+.++--+.+||..|-. ..+...+...-.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhcch
Confidence 4789999999999999654444222 112334578899998888877455689999998832 122233332333
Q ss_pred hccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+..+++++||+|+..+--..|. ..-+-|+.++.......++++++|+|++..
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 456789999999999833222232 222223333333333579999999999855
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-09 Score=80.37 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=76.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++.-+++++|--|+|||||++.|-....-...+ |-+.......+ .+-+++.+|..|. ..-+..
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP-----TlHPTSE~l~I-g~m~ftt~DLGGH-----------~qArr~ 80 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELSI-GGMTFTTFDLGGH-----------LQARRV 80 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCC-----CcCCChHHhee-cCceEEEEccccH-----------HHHHHH
Confidence 355789999999999999999986654311111 22222223444 6778899999993 334556
Q ss_pred HHhccCCccEEEEEEECC--CCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 98 IGMAKDGIHAVLLVFSIR--NRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~--~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+..+++.+|+++|++|+- +++.+.- .+.+-.+..+ +..|++++.||+|....
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~l----a~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESL----ATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHH----hcCcceeecccccCCCc
Confidence 677788999999999986 4444332 2222222222 23599999999997765
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=85.79 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.-+|+++|-|++|||||+..++.... ...+...+|..+.-..+.+ ++-.+.++|.||+.........-. +.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRG----RQ 132 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRG----RQ 132 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCC----ce
Confidence 3568999999999999999999997654 3334456777777777777 999999999999876321111111 11
Q ss_pred HHhccCCccEEEEEEECC
Q 021534 98 IGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~ 115 (311)
+-...+-+|+|+.|+|++
T Consensus 133 viavArtaDlilMvLDat 150 (364)
T KOG1486|consen 133 VIAVARTADLILMVLDAT 150 (364)
T ss_pred EEEEeecccEEEEEecCC
Confidence 222345679999999997
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=95.71 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=42.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
.++|+|.||+|||||||+|++.....++..+. .+|+....+.+. + ...|+|||||.....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~---~-~~~liDTPGir~~~l 272 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP---H-GGDLIDSPGVREFGL 272 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec---C-CCEEEECCCCCcccC
Confidence 57999999999999999999987654443322 245555555542 2 235999999987654
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=97.36 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc----ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA----FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~----~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
.+|+++|.||+|||||||+|++... ....+..+++|.......+ +..+.|+||||+.....-...+..+-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 5899999999999999999998542 1233455677776654432 3457899999998642111111111111
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
.+ .....+..+.|.++..+.+.......++.+.. . ...+.+.+++.+.+
T Consensus 231 ~~-~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YI-TPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNI 279 (360)
T ss_pred hc-CCCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCcee
Confidence 11 11245788999998775555444444443331 1 12456666666654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-09 Score=94.34 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
...+++|+|.||+|||||||+|+|.....+ ...+|.|...+.... +..+.|+||||+.-...
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKL----DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEc----CCCeEEecCCCcCCCCc
Confidence 347899999999999999999999987433 345688888777664 34589999999876543
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-09 Score=89.44 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
....+++|.+|+|||||+|+|.+.....++.. ...+|+....+.+. .+-.|+|||||.....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccCc
Confidence 34778999999999999999998654333221 12456666666542 2235899999977543
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-09 Score=91.67 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=31.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh-hHHH--HHHHHHHHhCCCccCeEEEEEec
Q 021534 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK-EEGA--AIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 71 ~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-~~~~--~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+.|+||||-..... .......+.+.+.. ...-+++|++|+. .++. ...- .+-.+.-+.. ...|.+.|+||
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~--~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLR--LELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHH--HTSEEEEEE--
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhh--CCCCEEEeeec
Confidence 689999999432100 00111122222211 3456899999987 4332 2211 1111111111 12499999999
Q ss_pred cCCCCC
Q 021534 148 GDELED 153 (311)
Q Consensus 148 ~D~~~~ 153 (311)
+|++..
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 999873
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-09 Score=94.29 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=40.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
.++|+|.||+|||||||+|++.....++..+. .+|+....+.+ .+. ..|+|||||..+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l---~~g-~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL---PNG-GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC---CCC-cEEEeCCCccccc
Confidence 58999999999999999999876544332221 25666654443 222 3799999987654
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-09 Score=92.81 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=87.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS----------------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG 79 (311)
+..+..+|+++.+-.+||||.-.+|+.-..+.. .....|.|.......+.| .|.++.+|||||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpg 111 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPG 111 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCC
Confidence 344678999999999999999888764322111 011156788888888899 999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..|+... +.++ ++-.|+++.|+|++.+........++...+ ...|.++.+||+|....
T Consensus 112 hvdf~le-------verc----lrvldgavav~dasagve~qtltvwrqadk-----~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 112 HVDFRLE-------VERC----LRVLDGAVAVFDASAGVEAQTLTVWRQADK-----FKIPAHCFINKMDKLAA 169 (753)
T ss_pred cceEEEE-------HHHH----HHHhcCeEEEEeccCCcccceeeeehhccc-----cCCchhhhhhhhhhhhh
Confidence 9997643 3333 334499999999987777666555554443 23488999999997644
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=91.20 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=87.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG-SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.++++.++|+|+||+||||||.+|...-.-..... ..+.|... ...++++++.+|. | ...+.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs-------gK~RRiTflEcp~--D--------l~~mi 128 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS-------GKTRRITFLECPS--D--------LHQMI 128 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee-------cceeEEEEEeChH--H--------HHHHH
Confidence 44567888999999999999999976432111111 12222211 1456899999993 2 23344
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+... -+|++|+++|++-++.-+..++|..+..+. ...++-|+|+.|+.... ..+...... ....++.-+-
T Consensus 129 DvaK----IaDLVlLlIdgnfGfEMETmEFLnil~~HG----mPrvlgV~ThlDlfk~~-stLr~~KKr-lkhRfWtEiy 198 (1077)
T COG5192 129 DVAK----IADLVLLLIDGNFGFEMETMEFLNILISHG----MPRVLGVVTHLDLFKNP-STLRSIKKR-LKHRFWTEIY 198 (1077)
T ss_pred hHHH----hhheeEEEeccccCceehHHHHHHHHhhcC----CCceEEEEeecccccCh-HHHHHHHHH-HhhhHHHHHc
Confidence 4433 349999999998788877788887776532 23688899999987552 445444443 2223333332
Q ss_pred hcCCcEEEec
Q 021534 176 LCDNRCVLFD 185 (311)
Q Consensus 176 ~~~~~~~~f~ 185 (311)
. |..++.++
T Consensus 199 q-GaKlFyls 207 (1077)
T COG5192 199 Q-GAKLFYLS 207 (1077)
T ss_pred C-CceEEEec
Confidence 2 55655443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-07 Score=82.47 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCccccccCCC-C-C-------cc--eeEEEEEEE--e-------------
Q 021534 19 GERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGS-S-G-------VT--KTCEMQRTM--L------------- 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~-~-~-------~T--~~~~~~~~~--~------------- 66 (311)
....|+++|.+|+||||++..|. |..+......+ . + .+ ..+..+... .
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35789999999999999999886 44332111111 0 0 00 001111100 0
Q ss_pred -eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 67 -KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 67 -~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+..+.||||||... .+.....++..... ...+|.+++|+|+..+ .......+.+.+.. .+.-+|+
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~--~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAE--AIQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhh--hcCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEE
Confidence 0245889999999653 33445566665543 2357899999998633 22333444554433 3688899
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 247 TKlD~~ar 254 (429)
T TIGR01425 247 TKLDGHAK 254 (429)
T ss_pred ECccCCCC
Confidence 99997654
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-07 Score=71.61 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCccee-EEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKT-CEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~-~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
-+|+|+|.-++|||+++..|+..+. ........|.+ +-...++...+ ..+.|.||.|+.+. ..++..
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~--~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~~eLpr----- 79 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNH--VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---QQELPR----- 79 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccC--CCCCccccchhhheeEeeecCCChhheEEEeecccccCc---hhhhhH-----
Confidence 7899999999999999988865543 11222223333 22333333222 27999999998762 222222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC---CccCeEEEEEeccCCCCC
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK---KISDYMIVVFTGGDELED 153 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~---~~~~~~ilv~nk~D~~~~ 153 (311)
.++.-+|++++|.+..++ .....+..|++-... .-..|++++.||.|..++
T Consensus 80 --hy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 80 --HYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred --hHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 234457999999987633 233344444433322 223489999999998755
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-09 Score=94.83 Aligned_cols=62 Identities=31% Similarity=0.370 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~ 86 (311)
..+|++||.||+||||+||+|.|.... +.++++|.|.+++...+ ...+.|+|+||+.-++..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc----CCCceecCCCCccccCCC
Confidence 699999999999999999999999863 45567899999887764 456889999998866543
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.5e-09 Score=89.05 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=42.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
..++++|.||+|||||||+|++.....++..+ ..+|+....+.+ .+ ..|+||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccCC
Confidence 57899999999999999999987654333221 235666666554 22 37999999987543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-08 Score=98.11 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccC-------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC----ChHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKA-------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA----DPEF 89 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~----~~~~ 89 (311)
+-.+|+|++|+||||+|+.- |-.. +... ...+.|..|..+ -....++|||+|.+-+.. .+..
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHH
Confidence 56799999999999999875 4432 2211 112334444333 345567999999765432 2334
Q ss_pred HHHHHHHHHHhc--cCCccEEEEEEECCCCCC--h--------hHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 90 VSKEIVKCIGMA--KDGIHAVLLVFSIRNRFS--K--------EEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 90 ~~~~~~~~~~~~--~~~~d~il~v~d~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+..+...+... ...+|+||+++|+.+-+. . .-+..+..+.+.+|.. -||.||+||+|++..
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC
Confidence 566677766554 356899999999873222 1 1234455666667754 499999999999855
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=85.43 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=58.3
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---C-----ChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---F-----SKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~-----~~~~~~~l 126 (311)
.|..+....+.+ ++..+.+||++|-.. .+..|..++.++++|+||+|.++- + ...-...+
T Consensus 147 ~T~Gi~~~~f~~-~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl 214 (317)
T cd00066 147 KTTGIVETKFTI-KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL 214 (317)
T ss_pred ccCCeeEEEEEe-cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH
Confidence 455566666666 788999999999432 445556678899999999998731 0 11123445
Q ss_pred HHHHHHhCCCc--cCeEEEEEeccCCCC
Q 021534 127 HILESLFGKKI--SDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~~--~~~~ilv~nk~D~~~ 152 (311)
..+..++.... ..|+++++||.|...
T Consensus 215 ~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 215 NLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred HHHHHHHhCccccCCCEEEEccChHHHH
Confidence 55565554432 359999999999763
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=92.32 Aligned_cols=119 Identities=21% Similarity=0.218 Sum_probs=77.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC---------------CCCcceeEEEEEEEee----CCceEEEEeC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG---------------SSGVTKTCEMQRTMLK----AGQVVNVIDT 77 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~---------------~~~~T~~~~~~~~~~~----~~~~l~liDT 77 (311)
..-..+|+++|+-++|||+|+..|.+.+....... ..+++....-..+... ..+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34568999999999999999999987653111000 0233333333333221 2247899999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
||+.++. .+.... +..+|++++|+|+.++..-+...+++..-+ -..|+++|+||+|.+
T Consensus 205 PGHVnF~-------DE~ta~----l~~sDgvVlvvDv~EGVmlntEr~ikhaiq-----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFS-------DETTAS----LRLSDGVVLVVDVAEGVMLNTERIIKHAIQ-----NRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccch-------HHHHHH----hhhcceEEEEEEcccCceeeHHHHHHHHHh-----ccCcEEEEEehhHHH
Confidence 9998852 223333 445699999999987777666555543322 124899999999975
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.7e-08 Score=73.98 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=101.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
...-.++|+++|.+..|||||+-...|...-.......|.. +....+.. .+ -.+.|||..| .++
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN--~mdkt~~i-~~t~IsfSIwdlgG-----------~~~ 81 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVN--FMDKTVSI-RGTDISFSIWDLGG-----------QRE 81 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCcc--ceeeEEEe-cceEEEEEEEecCC-----------cHh
Confidence 34456899999999999999998887765311111112221 11122222 22 2578999998 356
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+...+..++.++-+|+|++|.+.+.+.+. +..+.++..|-.--.-=|+|.||.|..-.....+.+.+.. ..+.+
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~----qar~Y 155 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR----QARKY 155 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH----HHHHH
Confidence 77778888899999999999996666555 2334444333321112466899999863322333333332 24555
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+......++ +|+...-+++.++..+..-+
T Consensus 156 Ak~mnAsL~F------~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 156 AKVMNASLFF------CSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred HHHhCCcEEE------eeccccccHHHHHHHHHHHH
Confidence 5555666555 45555577888888766443
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=80.51 Aligned_cols=57 Identities=28% Similarity=0.441 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
...+++++|.+|+|||||+|++.+.....+. ...+.|...+... .+..+.||||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS-PSPGYTKGEQLVK----ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeeeeeEEEE----cCCCEEEEECcCC
Confidence 4578999999999999999999986643222 2345554443222 3447899999995
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.9e-09 Score=95.71 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=84.4
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK--------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG 79 (311)
+.++....+|.++.+...|||||..+|+-.+...+. ....|.|-......... .+..+++||+||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspg 81 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPG 81 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCC
Confidence 445667789999999999999999999876542211 11235555555555444 678999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+.|+. .++. .+..-+|+.+.++|+.++........++. .+-.. ...++|+||+|.+
T Consensus 82 hvdf~-------sevs----sas~l~d~alvlvdvvegv~~qt~~vlrq---~~~~~--~~~~lvinkidrl 137 (887)
T KOG0467|consen 82 HVDFS-------SEVS----SASRLSDGALVLVDVVEGVCSQTYAVLRQ---AWIEG--LKPILVINKIDRL 137 (887)
T ss_pred ccchh-------hhhh----hhhhhcCCcEEEEeeccccchhHHHHHHH---HHHcc--CceEEEEehhhhH
Confidence 99853 2233 33445699999999988888777766652 22221 2689999999943
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=87.77 Aligned_cols=72 Identities=31% Similarity=0.372 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCCCC---CChHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS---ADPEFVS 91 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~---~~~~~~~ 91 (311)
..++++|++|+|||||+|+|+|.....++... ..+|+....+.. .+ ...++||||+.+.. .+.+++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~---~~-~~~liDtPG~~~~~~~~~~~~~~~ 237 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL---PG-GGLLIDTPGFREFGLLHIDPEELA 237 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc---CC-CCEEEECCCCCccCCccCCHHHHH
Confidence 68999999999999999999997654333221 124554444433 21 23799999996533 3334444
Q ss_pred HHHHH
Q 021534 92 KEIVK 96 (311)
Q Consensus 92 ~~~~~ 96 (311)
..+..
T Consensus 238 ~~f~~ 242 (287)
T cd01854 238 HYFPE 242 (287)
T ss_pred HHhHH
Confidence 44433
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=85.45 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTP 78 (311)
+....+++|++||.||+|||||+|+|+.... ...+.+.+|.+.....+...+. -.++++|+.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a--~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIA 92 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKA--GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIA 92 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCC--CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeec
Confidence 3344679999999999999999999999876 3456778888888777655221 168999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
|+....-....+.+.+-+- ++.+|+++-|+++.
T Consensus 93 GLvkGAs~G~GLGN~FLs~----iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 93 GLVKGASAGEGLGNKFLSH----IRHVDAIFHVVRAF 125 (391)
T ss_pred ccccCcccCcCchHHHHHh----hhhccceeEEEEec
Confidence 9876443444455555443 45569999998764
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=91.93 Aligned_cols=59 Identities=25% Similarity=0.304 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc----cccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK----AFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~----~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..++.|+|.||+|||||||+|++.. ........+|+|.......+ +....|+||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l----~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL----DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc----CCCcEEEECCCccc
Confidence 3589999999999999999998643 11223445677777655443 23357999999864
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=88.20 Aligned_cols=90 Identities=13% Similarity=0.038 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTPGLFDSS 84 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTPG~~~~~ 84 (311)
++++++|.||+|||||+|+|++...-+. ...+.+|.......+.+.+. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999999874122 23456667766666665332 268999999987532
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
.....+...+... ++.+|+++.|++..
T Consensus 82 s~g~Glgn~fL~~----ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLAN----IREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHH----HHhCCEEEEEEeCC
Confidence 2122223333333 45569999999874
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-07 Score=82.51 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=58.9
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---C-----ChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---F-----SKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~-----~~~~~~~l 126 (311)
.|..+....+.+ ++..+.+||.+|-. ..+..|..++.++++||||+|.++- + ...-...+
T Consensus 170 ~T~Gi~~~~f~~-~~~~~~~~DvgGqr-----------~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl 237 (342)
T smart00275 170 PTTGIQETAFIV-KKLFFRMFDVGGQR-----------SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL 237 (342)
T ss_pred CccceEEEEEEE-CCeEEEEEecCCch-----------hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH
Confidence 455555666666 78889999999932 2445566678899999999998831 0 11123455
Q ss_pred HHHHHHhCCC--ccCeEEEEEeccCCCC
Q 021534 127 HILESLFGKK--ISDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~--~~~~~ilv~nk~D~~~ 152 (311)
..+..++... ...|++|++||.|...
T Consensus 238 ~~f~~l~~~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 238 NLFESICNSRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred HHHHHHHcCccccCCcEEEEEecHHhHH
Confidence 5666666543 2359999999999763
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=86.80 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
...++|+|++|+|||||+|+|+|.....++..+. .+|+....+.+ . ....|+||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~---~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL---P-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc---C-CCcEEEECCCcCcc
Confidence 3578999999999999999999976543332211 24444444333 2 23479999998753
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-08 Score=80.74 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+.+.|+|+|.+|+|||||++.++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999754
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=78.32 Aligned_cols=100 Identities=24% Similarity=0.295 Sum_probs=56.1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC--CCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR--NRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
|..+.||.|.|.+.. .-++ ..-+|.+++|+... +.+...-.-+++. .=++|+|
T Consensus 121 G~D~IiiETVGvGQs-------E~~I-------~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-----------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQS-------EVDI-------ADMADTVVLVLVPGLGDEIQAIKAGIMEI-----------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSSTH-------HHHH-------HTTSSEEEEEEESSTCCCCCTB-TTHHHH------------SEEEEE
T ss_pred CCCEEEEeCCCCCcc-------HHHH-------HHhcCeEEEEecCCCccHHHHHhhhhhhh-----------ccEEEEe
Confidence 457899999998852 0112 23469999998654 4444333333332 2478999
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-------CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLCD-------NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
|.|.... .....+ +...+.... .+++. +||.++.|+++|.+.|.++.
T Consensus 176 KaD~~gA-~~~~~~---------l~~~l~l~~~~~~~W~ppV~~------tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 176 KADRPGA-DRTVRD---------LRSMLHLLREREDGWRPPVLK------TSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --SHHHH-HHHHHH---------HHHHHHHCSTSCTSB--EEEE------EBTTTTBSHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHH---------HHHHHhhccccccCCCCCEEE------EEeCCCCCHHHHHHHHHHHH
Confidence 9994322 111221 233333211 23333 67788899999999998765
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=80.41 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=107.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCc------c---ccccC-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKK------A---FMSKA-----GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~------~---~~~~~-----~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+..+|+-+|+...|||||--+|+.-- . |.... -..|.|...-...++. ..+.+.=+|+||+.
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHA 128 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchH
Confidence 45678999999999999999988886421 1 11100 1135666655555555 67788899999965
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
|. +..++ .-...-|+.|+|+.+++..-+..++-|-+.++ .|- +++++.+||.|.+++ ...-+.
T Consensus 129 DY----------IKNMI-tGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~d--~e~leL 191 (449)
T KOG0460|consen 129 DY----------IKNMI-TGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVDD--PEMLEL 191 (449)
T ss_pred HH----------HHHhh-cCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccCC--HHHHHH
Confidence 41 22222 22345699999999987776777666655554 444 589999999999976 555555
Q ss_pred hhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhH-------HHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRT-------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~-------~~i~~l~~~i~~~~~ 210 (311)
++. .+++++..+|. ....+..++ -+|+.+ ..+..|++.+...++
T Consensus 192 VEm----E~RElLse~gf~Gd~~PvI~GSA-L~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 192 VEM----EIRELLSEFGFDGDNTPVIRGSA-LCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred HHH----HHHHHHHHcCCCCCCCCeeecch-hhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 554 36777776542 222211111 122222 347777777777654
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-08 Score=82.43 Aligned_cols=71 Identities=27% Similarity=0.314 Sum_probs=51.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc----ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA----FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE 88 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~----~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~ 88 (311)
.+...++.|+|.||+|||||||++..... .......+|+|..+....-.. ....+.++||||+..++..+.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGil~P~I~~~ 214 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGILVPSIVDV 214 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCcCCCCCCCH
Confidence 45679999999999999999999854332 222334578888876643333 677899999999987765443
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-06 Score=75.82 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCCC-----------cceeEEEEEEE---------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK------AFMSKAGSSG-----------VTKTCEMQRTM--------------- 65 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~~~-----------~T~~~~~~~~~--------------- 65 (311)
.+...|+++|++|+||||++..|.+.- +......... .-..+.+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999998885531 1111110000 00001111100
Q ss_pred -eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH---hc-cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 66 -LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG---MA-KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 66 -~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~---~~-~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
...+..+.||||||.... .....+++..... .. -..++.+++|+|++.+. .+..-...+.+.+ .+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAV-----GL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhC-----CC
Confidence 013457999999997643 2333333443322 11 23578899999998322 2222122222222 35
Q ss_pred EEEEEeccCCCCC
Q 021534 141 MIVVFTGGDELED 153 (311)
Q Consensus 141 ~ilv~nk~D~~~~ 153 (311)
.-+|+||.|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 7889999996644
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=77.54 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=55.9
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.||||||... .+.....++..++... .++-+++|++++.. ..+...+....+.++ +--+++||.|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEeec
Confidence 4689999999663 3444555566655444 57889999998733 233334444444443 3456799999
Q ss_pred CCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 150 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
....-+.. -.++...+.++..+.+..
T Consensus 152 et~~~G~~-------------l~~~~~~~~Pi~~it~Gq 177 (196)
T PF00448_consen 152 ETARLGAL-------------LSLAYESGLPISYITTGQ 177 (196)
T ss_dssp SSSTTHHH-------------HHHHHHHTSEEEEEESSS
T ss_pred CCCCcccc-------------eeHHHHhCCCeEEEECCC
Confidence 87553222 233344466666655543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.8e-07 Score=75.87 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=46.0
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh----ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEE
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM----AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIV 143 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 143 (311)
.+..+.||||||.... +.....++...... ....+|.+++|+|++. ...+......+.+.+ ...-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence 4468899999997652 33344444443322 1234899999999972 233333333333333 25788
Q ss_pred EEeccCCCCC
Q 021534 144 VFTGGDELED 153 (311)
Q Consensus 144 v~nk~D~~~~ 153 (311)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999998655
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-08 Score=90.81 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=91.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK----------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
.|-+...+|++..+-.+||||+-+.++........ ....+.|.......+.| .+.+++|||||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTP 112 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTP 112 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCC
Confidence 45568899999999999999999887654332110 11246777777778888 79999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.|+...- ..+++-.|+.+.|+|+..+.........+.++++. .|.+..+||+|....
T Consensus 113 GHvDFT~EV-----------eRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 113 GHVDFTFEV-----------ERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYN-----VPRICFINKMDRMGA 171 (721)
T ss_pred CceeEEEEe-----------hhhhhhccCeEEEEEcccceehhhHHHHHHHHhcC-----CCeEEEEehhhhcCC
Confidence 999975332 12244569999999987677777777777777643 489999999998866
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-06 Score=76.88 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC--------cc-ccccCCCC-C---------cceeEEEEEE-----------Eee
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK--------KA-FMSKAGSS-G---------VTKTCEMQRT-----------MLK 67 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~--------~~-~~~~~~~~-~---------~T~~~~~~~~-----------~~~ 67 (311)
.....|+|+|++|+||||++..|... .+ +....... + ....+..... .+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 45689999999999999999888642 11 00100000 0 0000111110 01
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||.... +......+.. +.... ....++|++.+...... ..+++.+... .+.-+|+||
T Consensus 427 ~~~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~--~~a~lLVLpAtss~~Dl-~eii~~f~~~------~~~gvILTK 493 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR---DRALAAQLNW-LRAAR--QVTSLLVLPANAHFSDL-DEVVRRFAHA------KPQGVVLTK 493 (559)
T ss_pred ccCCEEEecCCCcchh---hHHHHHHHHH-HHHhh--cCCcEEEEECCCChhHH-HHHHHHHHhh------CCeEEEEec
Confidence 3457899999997642 2222222321 21111 23567778876322211 2333433331 367899999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchh-hhhhHHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-AAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|....-+.. ..++...+.++.++.+...+ ..........|+..+..+-..
T Consensus 494 lDEt~~lG~a-------------Lsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~ 545 (559)
T PRK12727 494 LDETGRFGSA-------------LSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRA 545 (559)
T ss_pred CcCccchhHH-------------HHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhh
Confidence 9976442222 23334446666666554433 123334456666666665443
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-06 Score=74.35 Aligned_cols=73 Identities=19% Similarity=0.163 Sum_probs=44.0
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||.... +.....++...... -.+|.+++|+|+..+ .........+.+..+ .--+++||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence 456999999997642 33444555444322 257899999998632 222233333333232 467889999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 98654
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-07 Score=74.37 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=45.9
Q ss_pred ccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 105 IHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 105 ~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
+|.+|.|+|+.+...... ..... ...-=++++||+|+.+.....+...... ++.+ ..+.+++.
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~~~~q--------i~~ad~~~~~k~d~~~~~~~~~~~~~~~-----~~~~--~~~~~i~~- 175 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-KGGPG--------ITRSDLLVINKIDLAPMVGADLGVMERD-----AKKM--RGEKPFIF- 175 (199)
T ss_pred hCcEEEEEEcchhhhhhh-hhHhH--------hhhccEEEEEhhhccccccccHHHHHHH-----HHHh--CCCCCEEE-
Confidence 477999999873222111 10011 1112378999999874211223322221 2222 12344544
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+|+.++.|+++++++|.+.
T Consensus 176 -----~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 176 -----TNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred -----EECCCCCCHHHHHHHHHhh
Confidence 7889999999999999864
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=79.27 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=36.4
Q ss_pred CeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..-++|+||+|++......++.++.. ++.+.+ ..+++. .|+.++.|+++++++|..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~-----lr~lnp--~a~I~~------vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIAC-----AREVNP--EIEIIL------ISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHH-----HHhhCC--CCcEEE------EECCCCCCHHHHHHHHHH
Confidence 35799999999885311334444332 222221 344555 688889999999999875
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=76.69 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=60.7
Q ss_pred CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC---CCChh-----HHHH
Q 021534 54 GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN---RFSKE-----EGAA 125 (311)
Q Consensus 54 ~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~---~~~~~-----~~~~ 125 (311)
..|..+....+.+ .+..+.++|.+|- +.-+.-|..++.++++||||++.++ .+.+. -.+.
T Consensus 180 ~~T~GI~e~~F~~-k~~~f~~~DvGGQ-----------RseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS 247 (354)
T KOG0082|consen 180 VPTTGIVEVEFTI-KGLKFRMFDVGGQ-----------RSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES 247 (354)
T ss_pred cCcCCeeEEEEEe-CCCceEEEeCCCc-----------HHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH
Confidence 3577777777888 8899999999992 2233344557899999999998761 12111 1345
Q ss_pred HHHHHHHhCCCc--cCeEEEEEeccCCCCC
Q 021534 126 IHILESLFGKKI--SDYMIVVFTGGDELED 153 (311)
Q Consensus 126 l~~l~~~~~~~~--~~~~ilv~nk~D~~~~ 153 (311)
+.++...+.... ..++|+.+||.|+...
T Consensus 248 ~~LF~sI~n~~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 248 LKLFESICNNKWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred HHHHHHHhcCcccccCcEEEEeecHHHHHH
Confidence 566666665543 2479999999998744
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=78.23 Aligned_cols=128 Identities=21% Similarity=0.197 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccC---------CC--------------CCcceeEEEEE-------EEeeC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKA---------GS--------------SGVTKTCEMQR-------TMLKA 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~---------~~--------------~~~T~~~~~~~-------~~~~~ 68 (311)
....++|+|++|+||||++..|.+......+. .. .+......... ..+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-R 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-c
Confidence 35689999999999999999986532110000 00 00000000000 111 3
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCc---cCeEEEEE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKI---SDYMIVVF 145 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ilv~ 145 (311)
+..+.||||||.... +..+.+.+... .. ...++-.++|++++...... ...+..+....+.+. ...--+|+
T Consensus 215 ~~DlVLIDTaG~~~~---d~~l~e~La~L-~~-~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 215 NKHMVLIDTIGMSQR---DRTVSDQIAML-HG-ADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred CCCEEEEcCCCCCcc---cHHHHHHHHHH-hc-cCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEE
Confidence 568899999997642 23333433332 11 23345678899987333221 234444554432211 01346788
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 289 TKlDEt~~ 296 (374)
T PRK14722 289 TKLDEASN 296 (374)
T ss_pred eccccCCC
Confidence 99998755
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=79.65 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=75.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----------------------CCcceeEEEEE-------EEee
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----------------------SGVTKTCEMQR-------TMLK 67 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----------------------~~~T~~~~~~~-------~~~~ 67 (311)
+....|+|+|++|+||||++..|.+...+..+... .+......... ...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l- 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL- 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence 34579999999999999999988764211000000 00000000000 111
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.+|||+|.... +....+++.... . ...++-.++|+|++... .+ +..+...+.. ...--+++||
T Consensus 268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l~-~-~~~~~~~~LVl~at~~~--~~---~~~~~~~f~~--~~~~~~I~TK 335 (420)
T PRK14721 268 RGKHMVLIDTVGMSQR---DQMLAEQIAMLS-Q-CGTQVKHLLLLNATSSG--DT---LDEVISAYQG--HGIHGCIITK 335 (420)
T ss_pred cCCCEEEecCCCCCcc---hHHHHHHHHHHh-c-cCCCceEEEEEcCCCCH--HH---HHHHHHHhcC--CCCCEEEEEe
Confidence 3457899999997642 233444444332 1 22355678888887221 12 1222222322 2356778999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
.|....-+.. -.++...+.++.++.+..
T Consensus 336 lDEt~~~G~~-------------l~~~~~~~lPi~yvt~Gq 363 (420)
T PRK14721 336 VDEAASLGIA-------------LDAVIRRKLVLHYVTNGQ 363 (420)
T ss_pred eeCCCCccHH-------------HHHHHHhCCCEEEEECCC
Confidence 9987553222 333344466666655543
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.2e-07 Score=80.09 Aligned_cols=123 Identities=22% Similarity=0.191 Sum_probs=66.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCC--CCc---------ceeEEEEEEE-----------ee--C
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK------AFMSKAGS--SGV---------TKTCEMQRTM-----------LK--A 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~--~~~---------T~~~~~~~~~-----------~~--~ 68 (311)
....|+|+|++|+||||++..|.+.- +......+ .+. ...+...... .. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34789999999999999999986421 10000000 000 0000000000 00 1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||-.. .+.....++...+... .+|.+++|+|++... .....+++.+.. + ..--+++||.
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk~-~d~~~i~~~F~~-~-----~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMKS-KDMIEIITNFKD-I-----HIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccCh-HHHHHHHHHhcC-C-----CCCEEEEEcc
Confidence 34789999999654 2233344455554433 467889999876221 111334433332 1 3467789999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 388 DET~k 392 (436)
T PRK11889 388 DETAS 392 (436)
T ss_pred cCCCC
Confidence 97754
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.2e-07 Score=75.15 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=57.2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHH-HHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI-LESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~nk 147 (311)
|..+.||.|-|.+... -.+. +-+|.+++|.-..- ..+.+.++. +-+ ++ =++|+||
T Consensus 143 G~DvIIVETVGvGQse-------v~I~-------~~aDt~~~v~~pg~---GD~~Q~iK~GimE-ia------Di~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSE-------VDIA-------NMADTFLVVMIPGA---GDDLQGIKAGIME-IA------DIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcch-------hHHh-------hhcceEEEEecCCC---CcHHHHHHhhhhh-hh------heeeEec
Confidence 4578899999988642 1232 23599999975431 122222221 111 22 3789999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHH---HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEI---LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.|.-.. .....++... +.-. ....+.+.. ...++|.+++|+++|.+.|.++..
T Consensus 199 aD~~~A-~~a~r~l~~a-----l~~~~~~~~~~~W~pp----v~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 199 ADRKGA-EKAARELRSA-----LDLLREVWRENGWRPP----VVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred cChhhH-HHHHHHHHHH-----HHhhcccccccCCCCc----eeEeeeccCCCHHHHHHHHHHHHH
Confidence 993322 1222222111 1111 011111111 124788889999999999998764
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.5e-06 Score=83.58 Aligned_cols=125 Identities=16% Similarity=0.229 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCC----CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh----HHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSKAGSS----GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP----EFVS 91 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~----~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~----~~~~ 91 (311)
+--+|+|++|+||||++..- |... +....... ..|..| .|.-+..-++|||.|-+-+..+. ...+
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~c-----dwwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNC-----DWWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCccc-----CcccccceEEEcCCcceecccCcchhhHHHH
Confidence 44588999999999987542 3321 11111111 113433 34356677899999966544322 2333
Q ss_pred HHHHHHHHh--ccCCccEEEEEEECCCCCChhH--H--------HHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCIGM--AKDGIHAVLLVFSIRNRFSKEE--G--------AAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~~~--~~~~~d~il~v~d~~~~~~~~~--~--------~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+-.++.. ..+.+|+||+.+|+.+-++... . ..|+.|...++. .-||+|++||.|++..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~--~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA--RLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCceEEEEeccccccc
Confidence 444444433 3456899999999873332222 1 124445555554 3499999999999854
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-06 Score=81.75 Aligned_cols=165 Identities=19% Similarity=0.158 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccC---------CC--------------CCcceeEEEEE------E-EeeCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKA---------GS--------------SGVTKTCEMQR------T-MLKAG 69 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~---------~~--------------~~~T~~~~~~~------~-~~~~~ 69 (311)
...|+|+|++|+||||++..|.+......+. .. .+....+.... + .. .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence 4688999999999999999987643211100 00 00000000000 0 11 34
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..++||||||.... +..+.+++..... ...++-+++|+|++.. ..+ ..+++.+....+. .+--+|+||.
T Consensus 264 ~D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~---~i~glIlTKL 333 (767)
T PRK14723 264 KHLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE---DVDGCIITKL 333 (767)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC---CCCEEEEecc
Confidence 57899999996542 2334444443322 2346778899998722 122 2233333332111 2456789999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchh-hhhhHHHHHHHHHHHHHH
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-AAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-sa~~~~~i~~l~~~i~~~ 208 (311)
|....-+.. -.++...+.++.++.+...+ ......+-+.+.+.+...
T Consensus 334 DEt~~~G~i-------------L~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~ 381 (767)
T PRK14723 334 DEATHLGPA-------------LDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFAT 381 (767)
T ss_pred CCCCCccHH-------------HHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhcc
Confidence 977543222 23334446666665554333 223334445666665543
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.9e-07 Score=69.55 Aligned_cols=117 Identities=20% Similarity=0.139 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--C-ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--G-QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~-~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
..++++++|..|.||||++++.+-... .... ..|..+..+...... + -.+..|||.|-.-..+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeF--e~~y--~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg---------- 74 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEF--EKTY--PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG---------- 74 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccc--eecc--cCcceeEEeeeeeecccCcEEEEeeecccceeecc----------
Confidence 358999999999999999998765543 1111 223344444433322 2 3789999999543211
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.-..++=+..|.++++|+..+++-.. ..+.+-+...++. .|+++..||.|.-..
T Consensus 75 -lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 75 -LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKAR 129 (216)
T ss_pred -cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecccc
Confidence 11122334568899999986766554 3455556666654 599999999995543
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-07 Score=81.58 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~ 86 (311)
...++++|+|-||+||||+||+|......+++. .+|.|...+... .+..|.|+|.||+.-...+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV~----Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEVK----LDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhee----ccCCceeccCCceeecCCC
Confidence 456999999999999999999999988765554 467777665544 5678999999998765433
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=67.55 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++++|..|+|||||++.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998765
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.5e-06 Score=71.41 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=98.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC-------------CCCcceeEEEEEEEeeC--------------
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG-------------SSGVTKTCEMQRTMLKA-------------- 68 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-------------~~~~T~~~~~~~~~~~~-------------- 68 (311)
..+..+.|+++|+.++|||||..+|+-... ..+.. ..|-|..+...-+-+.+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~-DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRL-DDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCC-CCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345679999999999999999988743221 01110 02223333333222211
Q ss_pred --------CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 69 --------GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 69 --------~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
++-+.+|||-|+... +...+...+ -.++|-.++++-+++..+...++-|-.+..+ .-|
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpw------LrTtirGL~---gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-----~lP 257 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPW------LRTTIRGLL---GQKVDYGLLVVAADDGVTKMTKEHLGIALAM-----ELP 257 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHH------HHHHHHHHh---ccccceEEEEEEccCCcchhhhHhhhhhhhh-----cCC
Confidence 245789999996531 122233332 3468999999988877776665555444332 149
Q ss_pred EEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEec-------------------CCchhhhhhHHHHHHH
Q 021534 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD-------------------NKTKDAAKRTEQVGKL 201 (311)
Q Consensus 141 ~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-------------------~~~~~sa~~~~~i~~l 201 (311)
+|+++||+|+.++ ..+...+++ +..+++..+.-.+... ....+|+-++.|++-|
T Consensus 258 viVvvTK~D~~~d--dr~~~v~~e-----i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 258 VIVVVTKIDMVPD--DRFQGVVEE-----ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred EEEEEEecccCcH--HHHHHHHHH-----HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 9999999999987 555555443 3333333221111110 0023566777888777
Q ss_pred HHHHHHH
Q 021534 202 LSLVNSV 208 (311)
Q Consensus 202 ~~~i~~~ 208 (311)
.+.+..+
T Consensus 331 ~e~f~~L 337 (527)
T COG5258 331 DEFFLLL 337 (527)
T ss_pred HHHHHhC
Confidence 7766544
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-06 Score=77.27 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=43.4
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.||||||.... ++...+++..... ...+|.+++|+|++.. . ..+..++. |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~--~~~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKE--AVKPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHH--HhcccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 47899999996642 3445555555433 2257899999998732 2 23333333 2221 124577899999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
....
T Consensus 244 ~~a~ 247 (437)
T PRK00771 244 GTAK 247 (437)
T ss_pred CCCc
Confidence 7644
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-07 Score=80.35 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=48.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+..+.+-|+++|.||+||||+||+|-...++.+.+. +|.|..-++.. .-++|.|||+||+..++.
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPI-pGETKVWQYIt----LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPI-PGETKVWQYIT----LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCC-CCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence 345779999999999999999999998888554333 45555444333 346789999999877654
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-06 Score=74.49 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-------ccCCC--CC---------cceeEEEEEE----------EeeCCce
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFM-------SKAGS--SG---------VTKTCEMQRT----------MLKAGQV 71 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~~~~~--~~---------~T~~~~~~~~----------~~~~~~~ 71 (311)
...|+|+|++|+||||++..|....... ....+ .+ ....+..... .- .+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D 301 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSE 301 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCC
Confidence 4578999999999999998886422100 00000 00 0000000000 00 3557
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHhcc-CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 72 VNVIDTPGLFDSSADPEFVSKEIVKCIGMAK-DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 72 l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~-~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
+.||||||+... +.....++...+.... ..++-.++|+|++.... .-...... +. ...+--+|+||.|.
T Consensus 302 ~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~----f~--~~~~~glIlTKLDE 371 (432)
T PRK12724 302 LILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKA----YE--SLNYRRILLTKLDE 371 (432)
T ss_pred EEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHH----hc--CCCCCEEEEEcccC
Confidence 899999997642 2223344444443321 22457888999872221 11222222 32 12356788999997
Q ss_pred CCC
Q 021534 151 LED 153 (311)
Q Consensus 151 ~~~ 153 (311)
...
T Consensus 372 t~~ 374 (432)
T PRK12724 372 ADF 374 (432)
T ss_pred CCC
Confidence 754
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.8e-06 Score=72.83 Aligned_cols=144 Identities=18% Similarity=0.131 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc------cc-cccCCC-CCc---------ceeEEEEEEE-----------e--eC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK------AF-MSKAGS-SGV---------TKTCEMQRTM-----------L--KA 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~------~~-~~~~~~-~~~---------T~~~~~~~~~-----------~--~~ 68 (311)
+...|+++|++|+||||++..|...- +. ...... .+. ...+..+... . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45789999999999999998885321 10 000000 000 0000011000 0 02
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||... .+.....++...... ..+|.+++|++++ ....+ ....+.. +.. ...--+|+||.
T Consensus 285 ~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNY---LAEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCc---cCHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence 45789999999754 234444445544332 2457777887764 22222 3333332 221 23567789999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
|....-|.. -++....+.++.++.+.
T Consensus 353 DET~~~G~~-------------Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 353 DETTRIGDL-------------YTVMQETNLPVLYMTDG 378 (407)
T ss_pred cCCCCccHH-------------HHHHHHHCCCEEEEecC
Confidence 977542222 33344446666655443
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.6e-06 Score=73.01 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-C----------------------CcceeEEEEE-------EEeeC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-S----------------------GVTKTCEMQR-------TMLKA 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-~----------------------~~T~~~~~~~-------~~~~~ 68 (311)
+...|++||+||+||||.+-.|........+... . ++...+.... ..+ .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 4789999999999999999887654331111110 0 1111111110 011 4
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
++.+.||||.|... .+.....++...+..+ ...-+.+|++++.. ...+..+-+.|+. ...--+++||.
T Consensus 281 ~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-----~~dlkei~~~f~~--~~i~~~I~TKl 348 (407)
T COG1419 281 DCDVILVDTAGRSQ---YDKEKIEELKELIDVS--HSIEVYLVLSATTK-----YEDLKEIIKQFSL--FPIDGLIFTKL 348 (407)
T ss_pred cCCEEEEeCCCCCc---cCHHHHHHHHHHHhcc--ccceEEEEEecCcc-----hHHHHHHHHHhcc--CCcceeEEEcc
Confidence 56899999999653 2333444555555443 22344556676622 1222233333433 12456779999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchh
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD 190 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 190 (311)
|....-|. +-.++...+-++.++.+...+
T Consensus 349 DET~s~G~-------------~~s~~~e~~~PV~YvT~GQ~V 377 (407)
T COG1419 349 DETTSLGN-------------LFSLMYETRLPVSYVTNGQRV 377 (407)
T ss_pred cccCchhH-------------HHHHHHHhCCCeEEEeCCCCC
Confidence 97754222 233444446666666555433
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=74.19 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|+|++|+||||++..|.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 368999999999999999998754
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.2e-06 Score=75.38 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=50.6
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||.... +......+..++... ....-+++|++++... ..-..++..+. . ..+--+++||+
T Consensus 299 ~~DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~~-~~l~~~~~~f~----~--~~~~~vI~TKl 367 (424)
T PRK05703 299 DCDVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATTKY-EDLKDIYKHFS----R--LPLDGLIFTKL 367 (424)
T ss_pred CCCEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCCCH-HHHHHHHHHhC----C--CCCCEEEEecc
Confidence 457899999997542 222334455554422 2345667778876221 11122223322 2 11346889999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
|....-+. +..++...+.++.++.+..
T Consensus 368 Det~~~G~-------------i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 368 DETSSLGS-------------ILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred cccccccH-------------HHHHHHHHCCCEEEEeCCC
Confidence 97644221 3334444566766665543
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=67.83 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=60.1
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++++|+|++.++...+..+.+.+.... ...|+++|+||+|+.++ ..+..++.. +....
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~---~~~p~ilVlNKiDl~~~--~~~~~~~~~---------~~~~~- 68 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEK---PHKHLIFVLNKCDLVPT--WVTARWVKI---------LSKEY- 68 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhcc---CCCCEEEEEEchhcCCH--HHHHHHHHH---------HhcCC-
Confidence 3466789999999998776666667777766421 22599999999998755 333333332 11111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.. ...|+..+.++++|++.+.++.
T Consensus 69 ~~~~----~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 PTIA----FHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cEEE----EEeeccccccHHHHHHHHHHHH
Confidence 1111 2367788889999999998765
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-05 Score=70.99 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||.... ++....++...... -.++.+++|+|+.. ..........+.+.+ ...-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~--v~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAA--VNPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHh--hCCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 357899999996532 33344444443332 25678899999752 122233333333322 2356788999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 251 D~~~r 255 (433)
T PRK10867 251 DGDAR 255 (433)
T ss_pred cCccc
Confidence 96543
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.5e-08 Score=74.91 Aligned_cols=170 Identities=13% Similarity=0.152 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc---eEEEEeCCCCCCCCCChHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ---VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~---~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+..-.++.|+|.-|+||||++...+..+. +.+...............| ++. ++.|||..|- ++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nf--s~~yRAtIgvdfalkVl~w-dd~t~vRlqLwdIagQ-----------er 87 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNF--SYHYRATIGVDFALKVLQW-DDKTIVRLQLWDIAGQ-----------ER 87 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHH--HHHHHHHHhHHHHHHHhcc-ChHHHHHHHHhcchhh-----------hh
Confidence 34568899999999999999998876553 2111111112222222334 333 7789999993 34
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHH-H-hCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILES-L-FGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~-~-~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
+..+...+++.+++...|+|++...+.+. ..+.+-+-. + ++.+.-.|++++-||+|.-.. ...+ . ...+
T Consensus 88 fg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~--a~~~-~-----~~~~ 159 (229)
T KOG4423|consen 88 FGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS--AKNE-A-----TRQF 159 (229)
T ss_pred hcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH--hhhh-h-----HHHH
Confidence 55555667889999999999986555443 222222211 1 122222379999999996533 1111 0 0012
Q ss_pred HHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.+..... -|.....+|++.+.++++..+.+.++.--+.
T Consensus 160 d~f~ken-----gf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 160 DNFKKEN-----GFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred HHHHhcc-----CccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 2222222 2333345788888999999888877654444
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.7e-05 Score=68.00 Aligned_cols=123 Identities=19% Similarity=0.181 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC----------ccccccCCC--C---------C--cceeEEEEEE---------Ee
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK----------KAFMSKAGS--S---------G--VTKTCEMQRT---------ML 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~----------~~~~~~~~~--~---------~--~T~~~~~~~~---------~~ 66 (311)
....|+++|++|+||||++..|... .+......+ . + ....+..... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4568999999999999999877532 110000000 0 0 0001111000 11
Q ss_pred eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 67 ~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
.+..+.||||||.... +.....++..++.... ..+-+++|+|++.. ..+ ..+.+..... ..+--+++|
T Consensus 253 -~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~--~~~~~~~~~~---~~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSD--VKEIFHQFSP---FSYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHH--HHHHHHHhcC---CCCCEEEEE
Confidence 3568999999997642 2212344555544332 23367889998733 222 2233444321 125678899
Q ss_pred ccCCCCC
Q 021534 147 GGDELED 153 (311)
Q Consensus 147 k~D~~~~ 153 (311)
|.|....
T Consensus 321 KlDet~~ 327 (388)
T PRK12723 321 KLDETTC 327 (388)
T ss_pred eccCCCc
Confidence 9997754
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-06 Score=71.27 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=68.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..-++.++|-|++||||++..|+|... ...+..++|-........+ .+..+.+.|.||+.+...+...-... +
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s--~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg~q----v 130 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFS--EVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRGKQ----V 130 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCC--ccccccceeEEEecceEec-cccceeeecCcchhcccccCCCCccE----E
Confidence 446899999999999999999999754 2233333333333333335 88899999999987653322211111 2
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK 135 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~ 135 (311)
....+-+++|+.|+|+-.+++ ...+++.-.+.+|-
T Consensus 131 iavartcnli~~vld~~kp~~--hk~~ie~eleg~gi 165 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGI 165 (358)
T ss_pred EEEeecccEEEEEeeccCccc--HHHHHHHhhhccee
Confidence 223456799999999886665 33455544444554
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-05 Score=60.44 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=43.2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.|+||||.... +......+..... ...++.+++|+|+... .........+.+..+ ...+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 457899999996531 2333444443332 2347999999998622 222333444433333 367778999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98755
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-06 Score=83.56 Aligned_cols=132 Identities=19% Similarity=0.195 Sum_probs=87.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE------------------------------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE------------------------------------ 60 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~------------------------------------ 60 (311)
.-.-+.|+|+|..++||||.++++.|..+.+.+.+- +|+...
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~gi--vTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGI--VTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccc--eecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 345688999999999999999999998776543321 110000
Q ss_pred -------------------EEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCC
Q 021534 61 -------------------MQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS 119 (311)
Q Consensus 61 -------------------~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~ 119 (311)
.-.+....-.++++||+||+..... ..+.+...+......++...+++|..+...+ ..
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SD 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hh
Confidence 0001111223789999999976543 3356888899999899999999999886652 11
Q ss_pred hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 120 KEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 120 ~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
-.....++..++.-+ ....++-|+||+|..+.
T Consensus 183 ~ats~alkiarevDp--~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 183 IATSPALVVAREVDP--GGSRTLEVITKFDFMDK 214 (657)
T ss_pred hhcCHHHHHHHhhCC--CccchhHHhhhHHhhhc
Confidence 122345555555432 23479999999998765
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.2e-05 Score=69.15 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=42.8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||... .++....++..... .-.+|.+++|+|+.. ..........+.+.++ ..-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~--~~~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ---IDEELMEELAAIKE--ILNPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCccc---cCHHHHHHHHHHHH--hhCCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 44689999999653 23334444544433 225788999999762 1222333333433332 467779999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 250 D~~~~ 254 (428)
T TIGR00959 250 DGDAR 254 (428)
T ss_pred cCccc
Confidence 96533
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00015 Score=62.21 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=40.2
Q ss_pred cCeEEEEEeccCCCCC---ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 138 SDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 138 ~~~~ilv~nk~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..|+++|+||+|.+.- ..+-.++... .....++..+-.+|...++ +|.+...+++-|..+|.+-.
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfd-fiq~~lRkFCLr~GaaLiy------TSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFD-FIQSHLRKFCLRYGAALIY------TSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHH-HHHHHHHHHHHHcCceeEE------eecccccchHHHHHHHHHHh
Confidence 3479999999997421 1011222211 1122356666666776665 67778899999999988654
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=62.98 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=57.0
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
..++|++|+|+|++++....+..+...+.. . .+|+++|+||+|+... .....+ ..+....+.++
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~----~~p~iiv~NK~Dl~~~--~~~~~~---------~~~~~~~~~~~ 73 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLE-L----GKKLLIVLNKADLVPK--EVLEKW---------KSIKESEGIPV 73 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHh-C----CCcEEEEEEhHHhCCH--HHHHHH---------HHHHHhCCCcE
Confidence 556799999999986555555444443322 1 2599999999998643 222211 11222223344
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++ .|+.++.|+++|++.+.+.++.
T Consensus 74 ~~------iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 74 VY------VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EE------EEccccccHHHHHHHHHHHHhh
Confidence 44 6888889999999999988764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=69.39 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-------------CCcceeEEEEEEE---------e---------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-------------SGVTKTCEMQRTM---------L--------- 66 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-------------~~~T~~~~~~~~~---------~--------- 66 (311)
.-..+++|+|...+|||||+..|+.... ..+.+. .|-|..+....+- +
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 3468999999999999999988865432 111000 1111111100000 0
Q ss_pred --eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 67 --KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 67 --~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
....-++++|..|...- .+.....+. -.-+|..++|+.++..++...++-|-.+..+. .|++++
T Consensus 244 ~e~SSKlvTfiDLAGh~kY-------~~TTi~gLt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~-----iPfFvl 309 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKY-------QKTTIHGLT--GYTPHFACLVVSADRGITWTTREHLGLIAALN-----IPFFVL 309 (591)
T ss_pred HhhhcceEEEeecccchhh-------heeeeeecc--cCCCceEEEEEEcCCCCccccHHHHHHHHHhC-----CCeEEE
Confidence 01236889999985421 111111111 22479999999998778877777777766542 489999
Q ss_pred EeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 145 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 145 ~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
++|+|+..+ ..++..+++ +..++.+.|-.
T Consensus 310 vtK~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~ 338 (591)
T KOG1143|consen 310 VTKMDLVDR--QGLKKTVKD-----LSNLLAKAGCT 338 (591)
T ss_pred EEeeccccc--hhHHHHHHH-----HHHHHhhcCcc
Confidence 999999988 667766665 66677666544
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.8e-06 Score=74.46 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCCcceeEEEEEEE
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------------------KAGSSGVTKTCEMQRTM 65 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------------------~~~~~~~T~~~~~~~~~ 65 (311)
.+.....+++|+|+..+||||+-+.|++...... .....+-|+.+....++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 4556789999999999999999888766443211 01114678888888888
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC-C----CCChh-HHHHHHHHHHHhCCCccC
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR-N----RFSKE-EGAAIHILESLFGKKISD 139 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~-~----~~~~~-~~~~l~~l~~~~~~~~~~ 139 (311)
. ..+.+++.|+||.-.+- .-.-....++|+-++|+.+. . .+... ...--.+|.+..|. +
T Consensus 154 t-e~~~ftiLDApGHk~fv-----------~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~ 218 (501)
T KOG0459|consen 154 T-ENKRFTILDAPGHKSFV-----------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---K 218 (501)
T ss_pred e-cceeEEeeccCcccccc-----------hhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---c
Confidence 8 88999999999976531 11112234568888888763 1 12211 22222344555554 6
Q ss_pred eEEEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHH
Q 021534 140 YMIVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLS 203 (311)
Q Consensus 140 ~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~ 203 (311)
++|+++||+|.... ..+..+++... +...+...|-+.+.=-...+.|..++.++.+..+
T Consensus 219 ~lVv~vNKMddPtvnWs~eRy~E~~~k-----~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 219 HLIVLINKMDDPTVNWSNERYEECKEK-----LQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eEEEEEEeccCCccCcchhhHHHHHHH-----HHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 89999999997533 22444444443 4444443332111000012245555666655554
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=63.27 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=46.1
Q ss_pred cEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEec
Q 021534 106 HAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD 185 (311)
Q Consensus 106 d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 185 (311)
+.-|||+|++.+- + .-++ .|+...+-=++|+||.|++.--+..++.+... .+.+-+ ..+++.
T Consensus 119 ~~~v~VidvteGe---~-----~P~K-~gP~i~~aDllVInK~DLa~~v~~dlevm~~d-----a~~~np--~~~ii~-- 180 (202)
T COG0378 119 HLRVVVIDVTEGE---D-----IPRK-GGPGIFKADLLVINKTDLAPYVGADLEVMARD-----AKEVNP--EAPIIF-- 180 (202)
T ss_pred ceEEEEEECCCCC---C-----Cccc-CCCceeEeeEEEEehHHhHHHhCccHHHHHHH-----HHHhCC--CCCEEE--
Confidence 4788888876321 1 0011 23333334678999999886533444443332 222111 234444
Q ss_pred CCchhhhhhHHHHHHHHHHHHHH
Q 021534 186 NKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 186 ~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
++.++++|++++++++...
T Consensus 181 ----~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 181 ----TNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred ----EeCCCCcCHHHHHHHHHhh
Confidence 5677889999999988653
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=69.09 Aligned_cols=123 Identities=24% Similarity=0.207 Sum_probs=66.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-------ccccCCC----------CCcceeEEEEEEE-----------ee--C
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-------FMSKAGS----------SGVTKTCEMQRTM-----------LK--A 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-------~~~~~~~----------~~~T~~~~~~~~~-----------~~--~ 68 (311)
+..+|+++|++|+||||++..|.+.-. +...... ......+...... .. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 447999999999999999988865311 0000000 0000001111100 00 2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||-... +....+++...+... .++-+++|+|++.. ...-...++.+.. ..+--+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~-~~d~~~~~~~f~~------~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC-HHHHHHHHHHhCC------CCCCEEEEEee
Confidence 458899999996532 233444455444322 45778999998622 1112233333322 23567889999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 222 Det~~ 226 (270)
T PRK06731 222 DETAS 226 (270)
T ss_pred cCCCC
Confidence 98755
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=71.61 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=56.5
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC--CC-C-----ChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR--NR-F-----SKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~--~~-~-----~~~~~~~l 126 (311)
.|..+....+.+..+..+.++|+.|-.. -++-|..++.++++||||++.+ +. + +..-.+.+
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~-----------eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl 289 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRS-----------ERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESL 289 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGG-----------GGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHH
T ss_pred CCCCeeEEEEEeecccccceecCCCCch-----------hhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHH
Confidence 4455555555543677999999999432 2344556688999999999976 11 1 11224567
Q ss_pred HHHHHHhCCCc--cCeEEEEEeccCCCC
Q 021534 127 HILESLFGKKI--SDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~~--~~~~ilv~nk~D~~~ 152 (311)
..+..++.... ..|+||++||.|.+.
T Consensus 290 ~lF~~i~~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 290 NLFESICNNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEE-HHHHH
T ss_pred HHHHHHHhCcccccCceEEeeecHHHHH
Confidence 77777776654 358999999999763
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-06 Score=75.50 Aligned_cols=59 Identities=29% Similarity=0.421 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+++|+|.+|+|||||+|.|+|.....++... ..+|.......+ .+ ...++||||+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l---~~-~~~l~DtpG~~~ 259 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL---PS-GGLLIDTPGMRE 259 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEe---cC-CCeecCCCchhh
Confidence 358999999999999999999986543332211 112332222222 22 236889999754
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.6e-05 Score=67.47 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=60.9
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
....+...+..+|+||+|+|+..+++..+..+.+.+. .+|+++|+||+|+.+. .....+. ..
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~-------~kp~IiVlNK~DL~~~--~~~~~~~---------~~ 72 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG-------NKPRLIVLNKADLADP--AVTKQWL---------KY 72 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC-------CCCEEEEEEccccCCH--HHHHHHH---------HH
Confidence 4444455567789999999998676665555444431 2589999999998644 3233222 22
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+..+++ .|+.++.++..|++.+.++++.
T Consensus 73 ~~~~~~~vi~------iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 73 FEEKGIKALA------INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred HHHcCCeEEE------EECCCcccHHHHHHHHHHHHHH
Confidence 2222334444 5667778899999988877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=66.92 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK-AFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+...|.|+|+..+|||.|+|.|++.. .|..+....++|..+-.+..... .+..+.++||.|+.+....+......+.
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~~~~d~~if 99 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSDEKYDAKIF 99 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCCCHHCHHHH
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccccccCcccccHHHH
Confidence 45688999999999999999999853 56666666677776655543321 3458999999999984333222222222
Q ss_pred H-HHHhccCCccEEEEEEECCCCCChhHHHHHHHH
Q 021534 96 K-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHIL 129 (311)
Q Consensus 96 ~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l 129 (311)
. ..-.+ ..+||=. ...+...+...|..+
T Consensus 100 ~Ls~LLS----S~~IyN~--~~~i~~~~l~~L~~~ 128 (260)
T PF02263_consen 100 ALSMLLS----SVLIYNS--MGNIDEDDLDQLELF 128 (260)
T ss_dssp HHHHHH-----SEEEEEE--CSSSSHHHHHCCHHH
T ss_pred HHHHHHh----CceeeCC--CCccchhHHHHHHHH
Confidence 2 11122 4555544 335555555555443
|
GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.7e-06 Score=75.76 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-+|++||.+|+|||||++.|.|...
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 447999999999999999999999875
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.6e-06 Score=69.23 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=91.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCCcceeEEE----------------------------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG-SSGVTKTCEM---------------------------------- 61 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-~~~~T~~~~~---------------------------------- 61 (311)
....++|+-+|+...||||++.++.|-....-... ....|....+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 34568999999999999999999988532100000 0001111110
Q ss_pred EEEE--eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCcc
Q 021534 62 QRTM--LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 62 ~~~~--~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~ 138 (311)
.... +..-+.+.+||+||++- +...+.....-.|+.++++-++++ ..+...+-|..+.-+- .
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDi-----------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~----L 179 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK----L 179 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHH-----------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh----h
Confidence 0000 00113578999999542 221121111224888888877622 2222222222222111 2
Q ss_pred CeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++++++-||+|+..+. ..++.+.+ +...+... +.++++ .||.-+.+++.+.++|.+.++.
T Consensus 180 khiiilQNKiDli~e~-~A~eq~e~------I~kFi~~t~ae~aPiiP------isAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKES-QALEQHEQ------IQKFIQGTVAEGAPIIP------ISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred ceEEEEechhhhhhHH-HHHHHHHH------HHHHHhccccCCCceee------ehhhhccChHHHHHHHHhcCCC
Confidence 5899999999998661 22332222 33333321 456666 7888889999999999887653
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=64.46 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHH---HHHHHHHHhCCCccCeEEEEEe
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGA---AIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~---~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.++|+||-..... .-.+...+...+..-.-++ +++|++|.. -+....+. .+..+..+..- ..|-|-|++
T Consensus 98 ddylifDcPGQIELyt-H~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~l--E~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYT-HLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMISL--EVPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEee-cChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHHh--cCcchhhhh
Confidence 3678999999665321 2224444555554422223 788888865 33322222 22333333222 238899999
Q ss_pred ccCCCCC-ChhcHHHHhh
Q 021534 147 GGDELED-NDETLEDYLG 163 (311)
Q Consensus 147 k~D~~~~-~~~~~~~~~~ 163 (311)
|+|++.+ ....++.++.
T Consensus 173 KMDLlk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLN 190 (273)
T ss_pred HHHHhhhhhHHHHHHhcC
Confidence 9999865 2234444433
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.6e-05 Score=61.62 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
++...+......+|++++|+|++.+....+..++..+ .+ +|+++|+||+|+... .....++ .
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~---~~----k~~ilVlNK~Dl~~~--~~~~~~~---------~ 69 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL---GN----KPRIIVLNKADLADP--KKTKKWL---------K 69 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh---cC----CCEEEEEehhhcCCh--HHHHHHH---------H
Confidence 3444445556778999999999866554444433322 12 589999999998644 2222211 2
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+...+..++. .|+.++.|+++|.+.+...++
T Consensus 70 ~~~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 70 YFESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHHhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence 22222333343 677888999999999988753
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00066 Score=52.57 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC---CccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCC-C---------CCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG---KKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTP-G---------LFDSS 84 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g---~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTP-G---------~~~~~ 84 (311)
..+|++.|+||+||||++..+.. ...+..+.- .|.++.. ++. .+.|+|+. | +....
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf---~t~EVR~------gGkR~GF~Ivdl~tg~~~~la~~~~~~~r 75 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF---ITPEVRE------GGKRIGFKIVDLATGEEGILARVGFSRPR 75 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE---Eeeeeec------CCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence 48999999999999999887753 222222111 1111111 111 34455544 1 11111
Q ss_pred -----CChHHHHHHHHHHHHhccCCccEEEEEEE-CCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 85 -----ADPEFVSKEIVKCIGMAKDGIHAVLLVFS-IRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 85 -----~~~~~~~~~~~~~~~~~~~~~d~il~v~d-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
...+.+.+-....+..++..+|+|| +| ++ ++......+.+.+.+.+..+ +|++.++.+-+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~aDvII--IDEIG-pMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEEADVII--IDEIG-PMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhcCCEEE--Eeccc-chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 1223344445556666666667654 55 45 88877888889999888653 58887776554
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.3e-05 Score=62.29 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=59.1
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH-H
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-E 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~ 172 (311)
+...+..++..+|++++|+|+++........+ .... ...|+++|+||+|+... ......+.. +. .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~---~~~~~ilV~NK~Dl~~~--~~~~~~~~~-----~~~~ 89 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFG---GNNPVILVGNKIDLLPK--DKNLVRIKN-----WLRA 89 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH----HHhc---CCCcEEEEEEchhcCCC--CCCHHHHHH-----HHHH
Confidence 56677778899999999999984433222222 1111 23599999999998754 221111111 11 0
Q ss_pred H-HHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 I-LQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~-~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+ ....+ ..+++ +|+.++.|+++|++.|.+.++
T Consensus 90 ~~~~~~~~~~~~i~~------vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 90 KAAAGLGLKPKDVIL------ISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHhhcCCCcccEEE------EECCCCCCHHHHHHHHHHHhh
Confidence 0 01111 12333 688889999999999998775
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-05 Score=63.70 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=28.8
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
..++|.+|.|+|.+.+--... +-+..|.+-.| .+++.+|+||+|..
T Consensus 153 ~~~vD~vivVvDpS~~sl~ta-eri~~L~~elg---~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTA-ERIKELAEELG---IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHH-HHHHHHHHHhC---CceEEEEEeeccch
Confidence 467899999999882211112 22233333333 26999999999954
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=58.76 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=75.3
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhC------CccccccCC-C-C---------CcceeEEEEEE----------
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILG------KKAFMSKAG-S-S---------GVTKTCEMQRT---------- 64 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g------~~~~~~~~~-~-~---------~~T~~~~~~~~---------- 64 (311)
++.-...++..|+++|-.|+||||.+-.|.. ..+..+... . + +.-..+.++..
T Consensus 92 ~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Ia 171 (451)
T COG0541 92 ELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIA 171 (451)
T ss_pred ccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHH
Confidence 3333355668899999999999998876642 121111000 0 0 00001111111
Q ss_pred -------EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCc
Q 021534 65 -------MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKI 137 (311)
Q Consensus 65 -------~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~ 137 (311)
.. .+..+.||||.|=.. .++.+.+++...-. .-.||=+|||+|+.-+ ......-+.+.+..+
T Consensus 172 k~al~~ak~-~~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~G--QdA~~~A~aF~e~l~--- 240 (451)
T COG0541 172 KAALEKAKE-EGYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIG--QDAVNTAKAFNEALG--- 240 (451)
T ss_pred HHHHHHHHH-cCCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccc--hHHHHHHHHHhhhcC---
Confidence 11 234789999999543 34566666665433 3368999999997622 122333444554443
Q ss_pred cCeEEEEEeccCCCCCChhcHH
Q 021534 138 SDYMIVVFTGGDELEDNDETLE 159 (311)
Q Consensus 138 ~~~~ilv~nk~D~~~~~~~~~~ 159 (311)
-.=+|+||.|....-+..+.
T Consensus 241 --itGvIlTKlDGdaRGGaALS 260 (451)
T COG0541 241 --ITGVILTKLDGDARGGAALS 260 (451)
T ss_pred --CceEEEEcccCCCcchHHHh
Confidence 36678999997655444443
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.90 E-value=9e-05 Score=57.75 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+++|.+|+|||||+..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999988754
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=61.22 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=39.9
Q ss_pred CeEEEEEeccCCCCCC------hhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELEDN------DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.|++||++|+|.+... .+.--+++.+ .++.++-.+|...++ ++.....+++-|..+|.+.+.
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq----~LR~~cL~yGAsL~y------ts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQ----YLRTFCLKYGASLIY------TSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHH----HHHHHHHhcCCeEEE------eeccccccHHHHHHHHHHHhc
Confidence 4899999999976320 0111123333 467777777887765 444555788888888777653
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.85 E-value=7e-05 Score=47.22 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=29.5
Q ss_pred CccEEEEEEECC--CCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 104 GIHAVLLVFSIR--NRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 104 ~~d~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
-.++|+|++|.+ .+.+-.+ ..+++.++..|+. +|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 358999999998 4555554 6778888888864 69999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00062 Score=60.83 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------cCCCCCcceeEEEE-----EEEeeCC--ceE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------KAGSSGVTKTCEMQ-----RTMLKAG--QVV 72 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------~~~~~~~T~~~~~~-----~~~~~~~--~~l 72 (311)
..+.+-|+|+|+..+||||||.++...-++|. +.+..-.|+..... .+.+.++ .++
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 34669999999999999999999755333221 11111223332221 1233122 388
Q ss_pred EEEeCCCCCCCC--CChHHHHHH------------HHHHHHhcc-----CC-ccEEEEEEECC-CCCC-----hhHHHHH
Q 021534 73 NVIDTPGLFDSS--ADPEFVSKE------------IVKCIGMAK-----DG-IHAVLLVFSIR-NRFS-----KEEGAAI 126 (311)
Q Consensus 73 ~liDTPG~~~~~--~~~~~~~~~------------~~~~~~~~~-----~~-~d~il~v~d~~-~~~~-----~~~~~~l 126 (311)
++||+-||.-.. +..++-..+ |..++.--- .+ .=+++...|.+ ..+. ..+.+.+
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 999998863211 111100000 111111000 11 13455555765 2332 3345667
Q ss_pred HHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 127 HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 127 ~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+.|++. .+|+++++|-.+=... ++.. - ..++-.+++.++.+.+ +...+...+..+++.+.
T Consensus 174 ~ELk~i-----gKPFvillNs~~P~s~--et~~----L-----~~eL~ekY~vpVlpvn----c~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 174 EELKEI-----GKPFVILLNSTKPYSE--ETQE----L-----AEELEEKYDVPVLPVN----CEQLREEDITRILEEVL 233 (492)
T ss_pred HHHHHh-----CCCEEEEEeCCCCCCH--HHHH----H-----HHHHHHHhCCcEEEee----hHHcCHHHHHHHHHHHH
Confidence 777763 3699999997763333 2211 1 2445567788887743 23334455666665544
Q ss_pred HHHHHcCCCCCcHHHHHHHH
Q 021534 207 SVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (311)
--.+-.....+.+.....+.
T Consensus 234 yEFPV~Ei~~~lP~Wve~L~ 253 (492)
T PF09547_consen 234 YEFPVSEININLPKWVEMLE 253 (492)
T ss_pred hcCCceEEEeecchHHhhcC
Confidence 33332233334444444433
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=60.16 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.-.+||||+-..++..-.. -..-....|......++.. .--++.+||.||--+.-...-. .+.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsP-neTlflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D-~e~i----- 98 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFD-YEMI----- 98 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCC-CceeEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccC-HHHH-----
Confidence 467999999999999988766654321 1000111111111111111 1126789999996554221110 1111
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
++++-++|||+|+.+.+-..-..+.-.+.....-....++=+.+.|.|.+.+
T Consensus 99 --F~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 99 --FRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred --HhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 5567899999999733322221222223333333333467888999998855
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.5e-05 Score=64.65 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=59.5
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
....+...+..+|+||+|+|+..+++..+..+...+. .+|+++|+||+|+.+. .....++ ..
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~-------~kp~iiVlNK~DL~~~--~~~~~~~---------~~ 75 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG-------NKPRLLILNKSDLADP--EVTKKWI---------EY 75 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC-------CCCEEEEEEchhcCCH--HHHHHHH---------HH
Confidence 3344455567789999999998666655544433332 2589999999998644 3233222 22
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+..++. .|+.++.++..|++.+..+++.
T Consensus 76 ~~~~~~~vi~------vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 76 FEEQGIKALA------INAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred HHHcCCeEEE------EECCCcccHHHHHHHHHHHHHH
Confidence 2222333444 4667778899999888877653
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8e-05 Score=64.93 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-----------ccccCC-----CCCcceeEEE---------------EEEEee
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-----------FMSKAG-----SSGVTKTCEM---------------QRTMLK 67 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-----------~~~~~~-----~~~~T~~~~~---------------~~~~~~ 67 (311)
-+.+|+|+|+..+|||||+..|+.... |...+. ..++..++-- ....|.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 458999999999999999988876432 100000 0000000000 011111
Q ss_pred -----CCceEEEEeCCCCCCCCCChHHHHHHHHH-HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE
Q 021534 68 -----AGQVVNVIDTPGLFDSSADPEFVSKEIVK-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 68 -----~~~~l~liDTPG~~~~~~~~~~~~~~~~~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
.-.-+++||..|.... +.. .+...-.-+|...+++-++..+-.-..+-|.+...+ ..|+
T Consensus 212 kIce~saKviTFIDLAGHEkY----------LKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL-----~VPV 276 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKY----------LKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL-----HVPV 276 (641)
T ss_pred eeccccceeEEEEeccchhhh----------hheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh-----cCcE
Confidence 1236889999995421 111 111223447888888876644444444444433332 2499
Q ss_pred EEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 142 ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++|+||+|+... ..+++.+.. +..++..-|
T Consensus 277 fvVVTKIDMCPA--NiLqEtmKl-----l~rllkS~g 306 (641)
T KOG0463|consen 277 FVVVTKIDMCPA--NILQETMKL-----LTRLLKSPG 306 (641)
T ss_pred EEEEEeeccCcH--HHHHHHHHH-----HHHHhcCCC
Confidence 999999999887 777777665 666666634
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=54.89 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+|+++|.+|+|||+|+.++...
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcC
Confidence 37999999999999999998543
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.1e-05 Score=58.22 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=38.5
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+..+|++++|+|+..+.+..+..+...+.... ..+|+++|+||+|+..+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~---~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD---PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc---CCCcEEEEEechhcCCH
Confidence 3456779999999998777766667777776542 23699999999998754
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.6e-05 Score=72.92 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEE
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRT 64 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~ 64 (311)
..-+|+++|++|+|||||++.|.|.....++....+.+..+.++..
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q 392 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQ 392 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEe
Confidence 4578999999999999999999887653334334455555555543
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00044 Score=59.96 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC------ccccc-cCCC--------------CCcceeEEEEE------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGK------KAFMS-KAGS--------------SGVTKTCEMQR------------ 63 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~-~~~~--------------~~~T~~~~~~~------------ 63 (311)
.+.+..|+++|-+|+||||.|-.|... ++... +... .++..-...+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 345789999999999999999887432 11100 0000 01111000000
Q ss_pred -EEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH---HHHhccC-CccEEEEEEECCCCCChhHHHHHHHHHHHhCCCcc
Q 021534 64 -TMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK---CIGMAKD-GIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 64 -~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~---~~~~~~~-~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~ 138 (311)
... .+..+.|+||.|=..+ ...+..++.+ .+....+ -+|-+++|+|++-+ .+...-.+.+.+..+-
T Consensus 216 ~Aka-r~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~l--- 286 (340)
T COG0552 216 AAKA-RGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVGL--- 286 (340)
T ss_pred HHHH-cCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcCC---
Confidence 011 3457999999995543 2344444443 3333332 25779999998722 1223333455555442
Q ss_pred CeEEEEEeccCCC
Q 021534 139 DYMIVVFTGGDEL 151 (311)
Q Consensus 139 ~~~ilv~nk~D~~ 151 (311)
--+++||.|..
T Consensus 287 --~GiIlTKlDgt 297 (340)
T COG0552 287 --DGIILTKLDGT 297 (340)
T ss_pred --ceEEEEecccC
Confidence 56789999954
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=57.56 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=51.3
Q ss_pred cEEEEEEECCCCCChhHHHHHH-HHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 106 HAVLLVFSIRNRFSKEEGAAIH-ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 106 d~il~v~d~~~~~~~~~~~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
|++|+|+|+..+.+..+..+.. .+.. ..+|+++|+||+|++.. ..+..++.. +....+..+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~--~~~~~~~~~--------~~~~~~~~ii~- 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPK--EVLRKWLAY--------LRHSYPTIPFK- 64 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCH--HHHHHHHHH--------HHhhCCceEEE-
Confidence 7899999998665555443331 2221 23599999999998754 333333221 11222333344
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.|+.++.++++|.+.|.+..
T Consensus 65 -----vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 65 -----ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred -----EeccCCcChhhHHHHHHHHh
Confidence 67888899999999886543
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00062 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+|+|+|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999987653
|
|
| >PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0051 Score=60.38 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=62.2
Q ss_pred EcCCCCcHHHHHHHHhCCccccccC-CCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 26 VGRTGNGKSATANSILGKKAFMSKA-GSSGVTKTCEMQRTML--KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 26 ~G~~g~GKSSlin~l~g~~~~~~~~-~~~~~T~~~~~~~~~~--~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
+|..++|||||+|.|+|...-.-.. +...+|..+-...... .....+.++|+-|.+......+...+.-......+
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la- 79 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALA- 79 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHH-
Confidence 5999999999999999987522222 1223443332222211 02457889999997765322221122222222222
Q ss_pred CCccEEEEE---EECCCCCChhH----HHHHHHHHHHhCCC----ccCeEEEEEeccCC
Q 021534 103 DGIHAVLLV---FSIRNRFSKEE----GAAIHILESLFGKK----ISDYMIVVFTGGDE 150 (311)
Q Consensus 103 ~~~d~il~v---~d~~~~~~~~~----~~~l~~l~~~~~~~----~~~~~ilv~nk~D~ 150 (311)
-+|++|+= +|++ +..... +.+++.-.++|+.. ....+++|+--++.
T Consensus 80 -~s~~~iiN~w~~~iG-~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~ 136 (742)
T PF05879_consen 80 -VSDVLIINMWEHDIG-RYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTG 136 (742)
T ss_pred -hhhheeeehhhhhhh-hhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCC
Confidence 23554433 3665 554443 34444445666432 22235555554443
|
It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=63.56 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
++..+.|+||.|-.. ....+.+++.+.... -.||-+|||+|++-.... ..-...+++..+ ---+++||
T Consensus 182 e~fdvIIvDTSGRh~---qe~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQaa--e~Qa~aFk~~vd-----vg~vIlTK 249 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK---QEASLFEEMKQVSKA--IKPDEIIFVMDASIGQAA--EAQARAFKETVD-----VGAVILTK 249 (483)
T ss_pred cCCcEEEEeCCCchh---hhHHHHHHHHHHHhh--cCCCeEEEEEeccccHhH--HHHHHHHHHhhc-----cceEEEEe
Confidence 455899999999543 345566666655433 358999999998733222 222233444333 35677999
Q ss_pred cCCCCCChhcHH
Q 021534 148 GDELEDNDETLE 159 (311)
Q Consensus 148 ~D~~~~~~~~~~ 159 (311)
.|....-+..+.
T Consensus 250 lDGhakGGgAlS 261 (483)
T KOG0780|consen 250 LDGHAKGGGALS 261 (483)
T ss_pred cccCCCCCceee
Confidence 998755444444
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=9e-05 Score=60.65 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH---HHHHHHHHHHhCCCccCeEEEEEe
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE---GAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~---~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
....|+|.||-..........+. |.+.+.. ..--=+++-++|.- -++.-. ...+-.+..++.-+ -|-|-|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~-I~~~Lek-~~~rl~~V~LiDs~-ycs~p~~~iS~lL~sl~tMl~me--lphVNvlS 171 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNK-IFRKLEK-LDYRLVAVNLIDSH-YCSDPSKFISSLLVSLATMLHME--LPHVNVLS 171 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHH-HHHHHHH-cCceEEEEEeeece-eeCChHHHHHHHHHHHHHHHhhc--ccchhhhh
Confidence 46789999996554333333333 3333322 11112455555643 222111 11122233333222 37888999
Q ss_pred ccCCCCC
Q 021534 147 GGDELED 153 (311)
Q Consensus 147 k~D~~~~ 153 (311)
|+|+...
T Consensus 172 K~Dl~~~ 178 (290)
T KOG1533|consen 172 KADLLKK 178 (290)
T ss_pred HhHHHHh
Confidence 9998754
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0023 Score=62.98 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...++|+|++|+|||||++.+.+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 368999999999999999999876
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=50.32 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=54.6
Q ss_pred EEcCCCCcHHHHHHHHhC------CccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 25 LVGRTGNGKSATANSILG------KKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g------~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.-|..|+||||+--.+.. .........+.+... ...+.|+|||+..+ ......
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~-----------~yd~VIiD~p~~~~---------~~~~~~- 63 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL-----------DYDYIIIDTGAGIS---------DNVLDF- 63 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC-----------CCCEEEEECCCCCC---------HHHHHH-
Confidence 457799999998655432 111111111111111 14578999998543 111222
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
+..+|.++++++.+ ..+-.+ ...++.+....+ ..++.+|+|+++.
T Consensus 64 ---l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 64 ---FLAADEVIVVTTPE-PTSITDAYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred ---HHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 34459999999887 333222 455556654332 2478899999873
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.019 Score=57.60 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+++++|+||+|||+++..|...
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=6e-05 Score=62.64 Aligned_cols=25 Identities=28% Similarity=0.431 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
=.|+++|+||||||||+|.+.|-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999999654
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=53.97 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998754
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=64.53 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=47.8
Q ss_pred cCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 102 KDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+.++|.+++|+|+.++ +... .+-+++.... ....|+++|+||+|++.. ..+..+ ...+...+..
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~--~LdR~L~~a~--~~~ip~ILVlNK~DLv~~--~~~~~~---------~~~~~~~g~~ 151 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPW--QLSRFLVKAE--STGLEIVLCLNKADLVSP--TEQQQW---------QDRLQQWGYQ 151 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEEchhcCCh--HHHHHH---------HHHHHhcCCe
Confidence 5678999999999733 3332 1112222211 123589999999998754 333322 2222334444
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+++ +|+.++.|+++|++.+.
T Consensus 152 v~~------iSA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 152 PLF------ISVETGIGLEALLEQLR 171 (352)
T ss_pred EEE------EEcCCCCCHHHHhhhhc
Confidence 444 46666677777766544
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.023 Score=57.49 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+|||||+.+|.
T Consensus 24 g~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456779999999999999963
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0028 Score=46.30 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=52.6
Q ss_pred EEEE-cCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 23 LVLV-GRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 23 I~v~-G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
|+++ +..|+||||+.-.|...-. ... +..+. ........+..+.|+|||+..+ ......
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~--~~~---~~~~~--l~d~d~~~~~D~IIiDtpp~~~---------~~~~~~---- 61 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALA--KEA---GRRVL--LVDLDLQFGDDYVVVDLGRSLD---------EVSLAA---- 61 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHH--hcC---CCcEE--EEECCCCCCCCEEEEeCCCCcC---------HHHHHH----
Confidence 3443 5689999998766543211 000 00000 0000000122678999998654 112222
Q ss_pred cCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 102 KDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
+..+|.++++++.+ ..+.. ...+++.+++.. .....++.+|+|+
T Consensus 62 l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~~lVvNr 106 (106)
T cd03111 62 LDQADRVFLVTQQD-LPSIRNAKRLLELLRVLD-YSLPAKIELVLNR 106 (106)
T ss_pred HHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcC-CCCcCceEEEecC
Confidence 33459999999887 33333 345556665532 2112367788774
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00018 Score=65.04 Aligned_cols=121 Identities=20% Similarity=0.307 Sum_probs=73.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEee-------------
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLK------------- 67 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~------------- 67 (311)
....+..++.|+.+...|||||-.+|.......+... ..+.|.........+.
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 3455678899999999999999999875543222110 1233433333222110
Q ss_pred --CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 68 --AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 68 --~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
++.-+++||.||+.|++ +-+..+++-.|+.+.|+|.-++........|... .+.. .+| ++++
T Consensus 94 d~~~FLiNLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA---~~ER-IkP-vlv~ 157 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQA---IAER-IKP-VLVM 157 (842)
T ss_pred CCcceeEEeccCCCcccch-----------hhhhheeEeccCcEEEEEccCceEechHHHHHHH---HHhh-ccc-eEEe
Confidence 23378999999999853 2233345667999999997656655554444332 2221 234 5678
Q ss_pred eccCCC
Q 021534 146 TGGDEL 151 (311)
Q Consensus 146 nk~D~~ 151 (311)
||+|..
T Consensus 158 NK~DRA 163 (842)
T KOG0469|consen 158 NKMDRA 163 (842)
T ss_pred ehhhHH
Confidence 999964
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0006 Score=63.16 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=65.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-CCcce-----eEEEEEEEeeCCceEEEEeCCC----CCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-SGVTK-----TCEMQRTMLKAGQVVNVIDTPG----LFDSSAD 86 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-~~~T~-----~~~~~~~~~~~~~~l~liDTPG----~~~~~~~ 86 (311)
-++.-+++++|++|||||||+|.|.|-.....+... .+.+. ..-..++.|..++++.+-+|-+ ++....+
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s 423 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS 423 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCC
Confidence 345678999999999999999999996542121110 11110 0001122332344444433322 3333344
Q ss_pred hHHHHHHHHHH-HHhccCCccEEEEEEE-CCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 87 PEFVSKEIVKC-IGMAKDGIHAVLLVFS-IRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~d~il~v~d-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
++++.+..... +....+.++++=.++. .+..++....+.+...+.+..+ .++++.
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~---~~l~ll 480 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP---ASLLLL 480 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC---CCEEEe
Confidence 44444433321 2223344566666663 3467888888877777665544 245554
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=56.37 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=54.2
Q ss_pred hccCCccEEEEEEECCCCC-ChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRF-SKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.++.++|++++|+|+.++. +... ..++..+.. ...|+++|+||+|+... ...... +...+...
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~--~~~~~~--------~~~~~~~~ 96 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDD--EDMEKE--------QLDIYRNI 96 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCC--HHHHHH--------HHHHHHHC
Confidence 3578899999999998433 4333 233333322 23589999999998754 322211 12223334
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+..++. +|+.++.|+++|++.+..
T Consensus 97 g~~v~~------~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 97 GYQVLM------TSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCeEEE------EecCCchhHHHHHhhhcC
Confidence 555554 688888999999987753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.032 Score=55.29 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+++.|++++||||++.++.
T Consensus 327 ~~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHH
Confidence 3457899999999999998874
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=47.22 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0001 Score=58.16 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||+|.+.|-..
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccC
Confidence 35789999999999999999998654
|
|
| >KOG2203 consensus GTP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.036 Score=51.22 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=65.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC-CChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS-ADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~-~~~~~~~~ 92 (311)
-.-..-.|+|+|+..+|||||+|.|+|.+...-... ...+|..+=..++.- -...+.+.|.-|-+... +.+....+
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~-i~p~i~vmDvEGTDGrERGEDqdFEr 111 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAG-IEPCILVMDVEGTDGRERGEDQDFER 111 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcC-CCCceEEEecccCCcccccccccHHH
Confidence 344567899999999999999999999875221111 112222221222211 12247789998865332 22221111
Q ss_pred HHHHHHHhccCCccEEEE---EEECCCCCChhH----HHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 93 EIVKCIGMAKDGIHAVLL---VFSIRNRFSKEE----GAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~---v~d~~~~~~~~~----~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
.-+ . -++.-++++|+ ++|++ +..... +..++....+|++.-. .+.+++-=-|...
T Consensus 112 ksA-L--FaiavSevvivNMW~~qIG-~~Q~aN~~LLKTVfeV~lrLF~~rk~-k~~LlFVIRD~~~ 173 (772)
T KOG2203|consen 112 KSA-L--FAIAVSEVVIVNMWEHQIG-LYQGANMALLKTVFEVNLRLFSPRKN-KTLLLFVIRDKTG 173 (772)
T ss_pred HhH-H--HHHhhhheehhhHHHHHhh-HhhccCcHHHHHHHHHHHHHhCCCCC-ceEEEEEEecccC
Confidence 111 1 11233455543 34665 433333 4445555677776332 2333333335443
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0007 Score=60.86 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+.+...+....+..+++++|+|+.+.... +...+.+..+ .+|+++|+||+|++... .... .+.. .+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s----~~~~l~~~~~---~~piilV~NK~DLl~k~-~~~~-~~~~----~l~ 117 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGS----LIPELKRFVG---GNPVLLVGNKIDLLPKS-VNLS-KIKE----WMK 117 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCC----ccHHHHHHhC---CCCEEEEEEchhhCCCC-CCHH-HHHH----HHH
Confidence 34555566667788999999998733322 2233444443 25899999999987541 1111 1111 022
Q ss_pred HHHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+...+. .++. +||.++.|+++|++.|.+.
T Consensus 118 ~~~k~~g~~~~~i~~------vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 118 KRAKELGLKPVDIIL------VSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHcCCCcCcEEE------ecCCCCCCHHHHHHHHHHH
Confidence 23344443 2343 6888899999999999765
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=60.72 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.|+++|++|||||||+|.|-|-+.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35789999999999999999987654
|
|
| >KOG4181 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0032 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...-..|+++|..|+||||+++.|.+.+
T Consensus 185 ~tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 185 TTDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCCeeEEEeecCCCccHHHHHHHHhccC
Confidence 3455789999999999999999998865
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00087 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346789999999999999999998643
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00014 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|+|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 5789999999999999999999764
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0002 Score=55.07 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=57.30 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+..+|.|.-|+|||||+|.++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 56788999999999999999854
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0027 Score=44.94 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=41.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
+++.|..|+||||+...+...-. . .+.. + ... + .+.++|+||..+.... . .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~--~----~g~~--v----~~~-~--d~iivD~~~~~~~~~~-------~---~~~~~ 56 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA--K----RGKR--V----LLI-D--DYVLIDTPPGLGLLVL-------L---CLLAL 56 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--H----CCCe--E----EEE-C--CEEEEeCCCCccchhh-------h---hhhhh
Confidence 67889999999999988864321 1 0100 0 111 1 5789999996652100 0 11224
Q ss_pred CCccEEEEEEECC
Q 021534 103 DGIHAVLLVFSIR 115 (311)
Q Consensus 103 ~~~d~il~v~d~~ 115 (311)
..+|.++++++.+
T Consensus 57 ~~~~~vi~v~~~~ 69 (99)
T cd01983 57 LAADLVIIVTTPE 69 (99)
T ss_pred hhCCEEEEecCCc
Confidence 4668999998876
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0045 Score=57.32 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML-KAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
...+-+...|+|+.++|||.|+++++|...-. ...........+..+.. .....+.+-|.+-. +...
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~--------- 488 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF--------- 488 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc-cccc---------
Confidence 34566888999999999999999999977522 11111111111111111 13335556665432 1100
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+...-..+|++++++|.+++-+ ...+..+.+.....-..|+++|.+|+|+-+
T Consensus 489 ---l~~ke~~cDv~~~~YDsS~p~s---f~~~a~v~~~~~~~~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 489 ---LTSKEAACDVACLVYDSSNPRS---FEYLAEVYNKYFDLYKIPCLMVATKADLDE 540 (625)
T ss_pred ---ccCccceeeeEEEecccCCchH---HHHHHHHHHHhhhccCCceEEEeeccccch
Confidence 0011134699999999984332 233333333333334469999999999653
|
|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.16 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l 40 (311)
...++|+|++|+|||||++++
T Consensus 28 ~~~~~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDAI 48 (650)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457788999999999999997
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0071 Score=43.82 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=39.5
Q ss_pred EEEEc-CCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 23 LVLVG-RTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 23 I~v~G-~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
|+|+| ..|+||||+.-.|...-. . . +. .+ .-+.......+.|+|||+..+. .....
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~--~-~---~~--~v--l~~d~d~~~d~viiD~p~~~~~---------~~~~~---- 58 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA--R-R---GK--RV--LLIDLDPQYDYIIIDTPPSLGL---------LTRNA---- 58 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH--h-C---CC--cE--EEEeCCCCCCEEEEeCcCCCCH---------HHHHH----
Confidence 56777 679999998766643211 1 0 10 01 1111111246889999996541 12222
Q ss_pred cCCccEEEEEEECC
Q 021534 102 KDGIHAVLLVFSIR 115 (311)
Q Consensus 102 ~~~~d~il~v~d~~ 115 (311)
+..+|.++.+++.+
T Consensus 59 l~~ad~viv~~~~~ 72 (104)
T cd02042 59 LAAADLVLIPVQPS 72 (104)
T ss_pred HHHCCEEEEeccCC
Confidence 23359999999877
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00026 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
|
... |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.006 Score=53.70 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=40.8
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHH-HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 71 VVNVIDTPGLFDSSADPEFVSKEIVK-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 71 ~l~liDTPG~~~~~~~~~~~~~~~~~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
...+|-|-|+.++. .+...+.. ......-..|+++-|+|+. .+.......-..+..... .-=++|+||.|
T Consensus 86 D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~-~~~~~~~~~~~~~~~Qia----~AD~ivlNK~D 156 (323)
T COG0523 86 DRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAA-HFLEGLDAIAELAEDQLA----FADVIVLNKTD 156 (323)
T ss_pred CEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHH-HhhhhHHHHHHHHHHHHH----hCcEEEEeccc
Confidence 56789999988751 11111111 0111233468999999998 433322212222222221 13578999999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
++++
T Consensus 157 lv~~ 160 (323)
T COG0523 157 LVDA 160 (323)
T ss_pred CCCH
Confidence 9987
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0003 Score=58.12 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
++...|+|+|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45588999999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0027 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+..+|.|.-|||||||+|.++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 467789999999999999999854
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0034 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...+++.|++|+|||++++.+.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0004 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 446889999999999999999998653
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0043 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-+|++||+.|+|||||+..|+|.-.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC
Confidence 5899999999999999999999754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00037 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
+.-.++|+|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346889999999999999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.13 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....++|+|++|+||||++++|+.
T Consensus 29 ~~~l~~I~G~tGaGKStildai~~ 52 (1047)
T PRK10246 29 SNGLFAITGPTGAGKTTLLDAICL 52 (1047)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346779999999999999998863
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00043 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||+..|-+-..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 35789999999999999999877553
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00038 Score=61.16 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999654
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.007 Score=48.42 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=38.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 71 ~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
.+.||||||-.+. ..... +..+|.+|++++.+ ..+... ..+++.+... + .....+|+|+++
T Consensus 64 d~viiD~p~~~~~---------~~~~~----l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~---~~~~~iv~N~~~ 125 (179)
T cd02036 64 DYILIDSPAGIER---------GFITA----IAPADEALLVTTPE-ISSLRDADRVKGLLEAL-G---IKVVGVIVNRVR 125 (179)
T ss_pred CEEEEECCCCCcH---------HHHHH----HHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-C---CceEEEEEeCCc
Confidence 6899999984431 12222 23568999999887 333332 3445555542 1 236788999998
Q ss_pred CC
Q 021534 150 EL 151 (311)
Q Consensus 150 ~~ 151 (311)
..
T Consensus 126 ~~ 127 (179)
T cd02036 126 PD 127 (179)
T ss_pred cc
Confidence 54
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00034 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.|+++|++|||||||+|.+.|--
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCc
Confidence 467889999999999999999853
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00039 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++++|++|+|||||+++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999753
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0034 Score=55.99 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=50.0
Q ss_pred CCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
.++|.+++|++..+.+..... .++..+ .. ...|.++|+||+|+... .... .+.. +.......+..+
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~----~~i~~VIVlNK~DL~~~--~~~~-~~~~-----~~~~y~~~g~~v 185 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVAC-ET----LGIEPLIVLNKIDLLDD--EGRA-FVNE-----QLDIYRNIGYRV 185 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh----cCCCEEEEEECccCCCc--HHHH-HHHH-----HHHHHHhCCCeE
Confidence 457999999988755544332 222222 22 22488999999998755 2211 1111 222333445555
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+. +|+.++.|+++|++.|..
T Consensus 186 ~~------vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 186 LM------VSSHTGEGLEELEAALTG 205 (347)
T ss_pred EE------EeCCCCcCHHHHHHHHhh
Confidence 54 677777888888877654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00045 Score=57.27 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.++++|++|+|||||++.|.|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0006 Score=56.48 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999999964
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0026 Score=57.56 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=44.6
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccC--eEEEE
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISD--YMIVV 144 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~--~~ilv 144 (311)
++..+.||||+|--. .+..+...+...+. ...+|.|+||=.+- -..+ ..-+..+...+.+.... -=-++
T Consensus 465 ~gfDVvLiDTAGR~~---~~~~lm~~l~k~~~--~~~pd~i~~vgeal---vg~dsv~q~~~fn~al~~~~~~r~id~~~ 536 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMH---NNAPLMTSLAKLIK--VNKPDLILFVGEAL---VGNDSVDQLKKFNRALADHSTPRLIDGIL 536 (587)
T ss_pred cCCCEEEEecccccc---CChhHHHHHHHHHh--cCCCceEEEehhhh---hCcHHHHHHHHHHHHHhcCCCccccceEE
Confidence 455799999999432 23344555555543 46789999996542 1222 23333444444432211 12467
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|.+++
T Consensus 537 ltk~dtv~d 545 (587)
T KOG0781|consen 537 LTKFDTVDD 545 (587)
T ss_pred EEeccchhh
Confidence 999998765
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00048 Score=56.06 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|+|||||++.|.|-.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.28 Score=49.73 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~i~G~nG~GKStil~ai~ 44 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAIL 44 (880)
T ss_pred cEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999863
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00071 Score=52.47 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35779999999999999999998653
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00057 Score=56.84 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999964
|
|
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0003 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-++|.|++|+||||+++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999998766
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00059 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.|+++|.+|+||||+.+.|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998753
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00068 Score=57.17 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00073 Score=56.12 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|+|-..
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 35789999999999999999999643
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0007 Score=56.39 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999999964
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00064 Score=56.73 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|+|||||++.|.|..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00074 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999964
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00073 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999964
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.32 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+++|++|+||||++.+|.
T Consensus 24 gi~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 466889999999999999874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00076 Score=56.27 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999964
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00065 Score=56.33 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999964
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00068 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.|.|..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999964
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00054 Score=57.65 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++++|++|+|||||+.+++|-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999993
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00082 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999865
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00057 Score=54.67 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+|+|+|.||+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00055 Score=52.78 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+++|+||||||||+..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998743
|
... |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00068 Score=57.30 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|||||||+++|.|--
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4677999999999999999999843
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00065 Score=56.97 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34678999999999999999999865
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.078 Score=53.04 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
|-.+.+. +|||+.|+|||-+|.+++.
T Consensus 105 PFHksFt-aIvGPNGSGKSNVIDsmLF 130 (1293)
T KOG0996|consen 105 PFHKSFT-AIVGPNGSGKSNVIDSMLF 130 (1293)
T ss_pred CCCCCce-eeECCCCCCchHHHHHHHH
Confidence 3333444 8899999999999999854
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00083 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999964
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.001 Score=54.91 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4466888999999999999999754
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00084 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3578999999999999999976
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00076 Score=56.54 Aligned_cols=26 Identities=46% Similarity=0.624 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-.++|+|++|+|||||++.|.|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999964
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00069 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|.|++|||||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999999999999864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0052 Score=56.66 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..-+|+++|.+||||||++|.|++-
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999863
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.37 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.+.++|+|++|+||||++.+|.
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3577999999999999999983
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00086 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|+|||||++.|.|..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999964
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.052 Score=44.66 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=36.8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCC-CccCeEEEEEe
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGK-KISDYMIVVFT 146 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~-~~~~~~ilv~n 146 (311)
...+.||||||..+ ...... +..+|.+|.++..+ .+.-. ...+++.+...... .....+.++.|
T Consensus 76 ~~d~viiD~p~~~~---------~~~~~~----l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n 141 (211)
T PHA02518 76 GYDYVVVDGAPQDS---------ELARAA----LRIADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTDGLPKFAFIIS 141 (211)
T ss_pred cCCEEEEeCCCCcc---------HHHHHH----HHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCCCCceEEEEEe
Confidence 34789999999543 112222 33459999998877 33322 23344444432211 11234567778
Q ss_pred ccCC
Q 021534 147 GGDE 150 (311)
Q Consensus 147 k~D~ 150 (311)
+.+.
T Consensus 142 ~~~~ 145 (211)
T PHA02518 142 RAIK 145 (211)
T ss_pred ccCC
Confidence 7653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00089 Score=55.89 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999999999753
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00068 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++|+|||||++.|.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999997653
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00092 Score=54.91 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446889999999999999999999653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00092 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33578999999999999999999964
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0079 Score=51.76 Aligned_cols=68 Identities=10% Similarity=-0.076 Sum_probs=35.9
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh-hHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK-EEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..+.||||||...... +. ..+..+|.+|+++..+ ...- ....+++.+.............+|+|++
T Consensus 116 yD~vIIDt~g~~~~~~--------~~----~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~ 182 (267)
T cd02032 116 YDVILFDVLGDVVCGG--------FA----APLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRT 182 (267)
T ss_pred CCEEEEeCCCCccccc--------ch----hhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Confidence 4578888877432110 11 1134569999998776 3332 2345555555432111112345789998
Q ss_pred CC
Q 021534 149 DE 150 (311)
Q Consensus 149 D~ 150 (311)
|.
T Consensus 183 ~~ 184 (267)
T cd02032 183 DK 184 (267)
T ss_pred CH
Confidence 83
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.35 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+++++|+||+||||++..|...
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999988754
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00095 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 311 | ||||
| 3lxx_A | 239 | Crystal Structure Of Human Gtpase Imap Family Membe | 4e-28 | ||
| 3v70_A | 247 | Crystal Structure Of Human Gtpase Imap Family Membe | 4e-25 | ||
| 2xtm_A | 234 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 7e-23 | ||
| 3p1j_A | 209 | Crystal Structure Of Human Gtpase Imap Family Membe | 1e-22 | ||
| 2xto_A | 240 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 2e-22 | ||
| 2xtp_A | 260 | Crystal Structure Of Nucleotide-Free Human Gimap2, | 9e-22 |
| >pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239 | Back alignment and structure |
|
| >pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247 | Back alignment and structure |
|
| >pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234 | Back alignment and structure |
|
| >pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209 | Back alignment and structure |
|
| >pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240 | Back alignment and structure |
|
| >pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 4e-69
Identities = 72/261 (27%), Positives = 133/261 (50%), Gaps = 11/261 (4%)
Query: 8 DADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK 67
+K S E ++LVG+TG GKSA NSIL K+AF SK GS +TKTC +
Sbjct: 10 GPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW- 68
Query: 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIH 127
+ + +IDTP +F E + KE+ +C ++ G H +LLV + R++ ++ A
Sbjct: 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQ 127
Query: 128 ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187
++ +FG+ + IV+FT ++L +L DY+ K L +++ C R F+N+
Sbjct: 128 RVKEIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALSKLVAACGGRICAFNNR 185
Query: 188 TKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKKSYDDQLKRITE 247
+ + + +QV +L+ + ++++ G YT+ +++ ++R++ +R+ E
Sbjct: 186 AEGSNQD-DQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPV------GSDERVKE 238
Query: 248 MFESKLKETTTRLEQQLAEEQ 268
+S +K T+ E
Sbjct: 239 FKQSLIKYMETQRSYTALAEA 259
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-67
Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 7/222 (3%)
Query: 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNV 74
P N + +VLVG+TG GKSAT NSILG+K F S + +TK CE + + K + V
Sbjct: 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-ETELVV 82
Query: 75 IDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFG 134
+DTPG+FD+ SKEI++CI + G HA+LLV + R+++EE A + +FG
Sbjct: 83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141
Query: 135 KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKR 194
++ +MI++FT D+L D L DYL RE P+ +++++ + +R +NK A +
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQE 198
Query: 195 TEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKK 236
Q +LL L+ V+ +N YT+ ++ + E+++Q +
Sbjct: 199 A-QRAQLLGLIQRVVRENKEGCYTNRMYQRAEE-EIQKQTQA 238
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 1e-58
Identities = 39/239 (16%), Positives = 82/239 (34%), Gaps = 22/239 (9%)
Query: 5 RVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRT 64
++I+ K ++++G+ G GKS+T NS++G++ + + + RT
Sbjct: 21 KLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT 80
Query: 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGA 124
M G +N+IDTPGL ++ + I + + + + + +
Sbjct: 81 M--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQ 137
Query: 125 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184
+ + FGK+I ++V T ++ + E + + LK I R F
Sbjct: 138 VVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEF 197
Query: 185 DNKTKDAA-------------------KRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAE 224
++ + L+ + V + D E
Sbjct: 198 EDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 3e-51
Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 22/218 (10%)
Query: 4 GRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQR 63
++++ ++++G+ G GKS+T NSI+G++ S + + R
Sbjct: 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82
Query: 64 TMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSI-RNRFSKEE 122
+ AG +N+IDTPGL + + I + I +L V + R +
Sbjct: 83 SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138
Query: 123 GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV 182
+ FGK I + IV T + +++ + + L ++++ +
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKK 197
Query: 183 LFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220
V+++N G+ ++
Sbjct: 198 DAQASDIPV----------------VLIENSGRCNKND 219
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 4e-09
Identities = 49/270 (18%), Positives = 93/270 (34%), Gaps = 64/270 (23%)
Query: 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGV----TKTCEMQRTMLKAGQ-VVNV 74
+N+++ G G+GK+ A + K + K C T+L+ Q ++
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 75 IDTPG--LFDSSADPEFVSKEI---VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHIL 129
ID D S++ + I ++ + +K + LLV + N + +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLV--LLNVQNAK------AW 259
Query: 130 ESLFG-----------KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178
+ F K+++D++ T L+ + TL P +K +L
Sbjct: 260 NA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-------PDEVKSLLLKY- 310
Query: 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAELK--EQMKK 236
D + +D +V S+I AE R L + K
Sbjct: 311 -----LDCRPQDLP---REVLTTNPRRLSII-------------AESIRDGLATWDNWKH 349
Query: 237 SYDDQLKRITEMFESKLKETTTR-LEQQLA 265
D+L I E + L+ R + +L+
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 43/264 (16%), Positives = 79/264 (29%), Gaps = 75/264 (28%)
Query: 56 TKTCEMQRTMLKAGQVVNVIDTPGL--FDSSADPEF----VSKEIVKCIGMAKDGIHAVL 109
+T E Q + +++V + + FD + +SKE + I M+KD + L
Sbjct: 9 FETGEHQ---YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 110 LVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169
+F L S +++ + + L N + L + E +P
Sbjct: 66 RLFWT--------------LLS-KQEEMVQKFV-----EEVLRINYKFLMSPIKTEQRQP 105
Query: 170 LKEILQLCDNRCVLF-DNK--TKDAAKRTEQVGKL------LSLVNSVIVQN-GG----- 214
+ R L+ DN+ K R + KL L +V++ G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 215 ------------QPYTDEIF----AELKRAE--------LKEQMKKSYD---DQLKRITE 247
+IF E L Q+ ++ D I
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 248 MFESKLKETTTRLEQQLAEEQAAR 271
S ++ L + L +
Sbjct: 226 RIHS-IQA---ELRRLLKSKPYEN 245
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 8e-08
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 16/143 (11%)
Query: 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNV- 74
+ N+ + G TG+GKS+ N++ G A +GV + M+R K + NV
Sbjct: 65 IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVV 123
Query: 75 -IDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLF 133
D PG+ ++ P+ +++ + RF K + +
Sbjct: 124 FWDLPGIGSTNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDIDIAKAISM-M 174
Query: 134 GKKISDYMIVVFTGGDELEDNDE 156
K+ V T D N+
Sbjct: 175 KKEF----YFVRTKVDSDITNEA 193
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 8e-05
Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 215 QPYTDEIFAELKRAELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQAARLKA 274
Q + A+ + +LK + + ++ K++ E+K+ + L++++ E+
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSV--ERYKKLHIGLENKIMQ----LQRKIDEQNKEYKSL 947
Query: 275 EQATQSAQTKSNDEIGKLKKDTAELREQ 302
+ + + + E KL+ D LR
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMS 975
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 4e-04
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 219 DEIFAELKRAELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQ 268
D E +E+ KK ++ +R +E E K K ++ ++
Sbjct: 102 DAASKV-MEQEWREKAKKDLEEWNQRQSEQVE-KNKINNRIADKAFYQQP 149
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)
Query: 16 PSNGERNLV-LVGRTGNGKSATANSILGKK-AFMS-KAGSSGVTKTCEMQRTM--LKAGQ 70
P G R + + GR GKS+ N+++G+ + +S AG T T + ++M G
Sbjct: 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAG----TTTDPVYKSMELHPIGP 84
Query: 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILE 130
V ++DTPGL D + + V+ +LV E+ ++
Sbjct: 85 VT-LVDTPGLD----DVGELGRLRVEKARRVFYRADCGILVTD-SAPTPYED----DVVN 134
Query: 131 SLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170
+I +VV D L + E L+ +
Sbjct: 135 LFKEMEIP--FVVVVNKIDVLGEKAEELKGLYESRYEAKV 172
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 100.0 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.98 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.97 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.9 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.89 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.89 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.89 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.88 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.87 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.87 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.87 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.86 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.86 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.86 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.86 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.86 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.86 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.85 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.85 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.85 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.85 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.85 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.85 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.85 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.85 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.85 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.85 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.85 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.85 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.85 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.84 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.84 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.84 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.84 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.84 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.84 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.84 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.84 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.84 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.84 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.84 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.84 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.84 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.84 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.84 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.84 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.84 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.84 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.84 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.84 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.83 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.83 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.83 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.83 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.83 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.83 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.83 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.83 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.83 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.83 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.83 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.83 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.83 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.83 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.83 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.83 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.83 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.83 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.83 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.83 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.83 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.83 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.83 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.82 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.82 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.82 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.82 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.82 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.82 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.82 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.82 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.82 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.82 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.82 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.82 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.82 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.82 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.81 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.81 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.81 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.81 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.81 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.81 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.81 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.81 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.81 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.81 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.81 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.81 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.81 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.81 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.81 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.8 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.8 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.8 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.8 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.8 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.8 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.8 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.8 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.8 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.8 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.8 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.8 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.79 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.79 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.79 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.79 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.79 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.79 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.78 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.78 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.78 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.78 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.78 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.78 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.78 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.78 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.78 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.78 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.77 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.77 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.76 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.76 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.76 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.76 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.76 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.76 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.76 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.76 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.75 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.75 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.75 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.75 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.74 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.74 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.74 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.74 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.74 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.74 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.73 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.73 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.73 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.58 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.73 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.73 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.72 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.72 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.72 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.71 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.7 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.7 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.7 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.69 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.69 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.68 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.68 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.68 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.68 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.68 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.68 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.67 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.66 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.66 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.66 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.65 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.63 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.63 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.61 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.61 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.6 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.59 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.59 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.58 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.57 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.57 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.57 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.57 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.56 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.55 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 99.52 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.52 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.51 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.48 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.48 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.45 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.44 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.41 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.38 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.38 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.37 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.31 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.31 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.29 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.27 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.24 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.23 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.21 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.2 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.17 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.15 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.15 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.13 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.1 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.02 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.98 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.94 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.89 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.76 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.72 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.67 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.45 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.42 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.4 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.39 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.38 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 98.37 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.35 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.26 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.26 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.12 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.12 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.12 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.11 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.09 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.09 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.03 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.01 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.95 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.89 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.85 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.83 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.73 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.63 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.61 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.54 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.46 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.44 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.42 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.35 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.29 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.28 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.26 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 97.25 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.25 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.24 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.23 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.23 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.23 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.23 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.21 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.2 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.19 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.19 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.18 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.17 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.16 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.16 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.16 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.15 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.15 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.14 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.12 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.11 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.11 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 97.11 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.1 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.1 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.09 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.08 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.07 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.07 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.07 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.07 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 97.07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.06 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.05 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.05 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.05 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.04 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.04 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.03 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.01 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.99 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.98 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.98 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.97 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.95 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.95 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 96.92 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 96.88 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.88 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.88 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 96.87 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.86 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.86 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.86 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.85 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.84 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 96.82 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.82 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.82 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.81 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.8 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 96.8 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.79 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.78 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.78 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.78 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.78 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.77 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.76 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.76 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.76 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.75 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.73 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.72 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.71 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.71 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.69 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.68 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.68 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.68 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.67 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.67 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.66 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.66 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.66 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.66 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.64 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.64 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.62 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.62 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.62 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.61 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.59 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.58 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.58 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.58 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.57 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.57 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.54 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 96.52 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.52 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.5 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.42 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.41 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.41 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.41 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.39 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.39 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.38 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.37 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.37 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.35 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.34 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.33 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.32 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.32 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.32 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.32 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.32 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.3 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.29 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.29 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.27 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.25 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.24 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.23 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.22 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.2 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.2 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 96.19 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.19 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.19 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.18 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.17 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.16 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.15 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.15 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.14 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.13 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.1 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.1 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.09 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.09 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.08 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.08 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.07 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.05 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.04 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.03 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.03 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.03 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.02 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.02 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.02 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.99 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 95.98 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.96 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.96 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.96 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.95 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.94 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.93 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.92 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.91 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.91 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 95.9 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 95.9 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.86 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.86 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.85 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.85 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.85 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.85 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.84 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.84 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.82 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 95.82 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 95.8 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.8 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.8 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.79 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.78 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.75 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.73 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.73 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.71 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.69 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.67 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.65 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.62 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.62 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.61 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.61 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.61 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.6 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.59 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.56 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.54 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 95.53 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.5 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 95.42 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 95.42 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.38 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.35 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 95.35 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.33 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.33 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.31 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 95.31 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.29 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.28 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 95.26 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.2 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.19 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.18 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.17 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.16 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.11 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.08 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.06 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.06 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 95.06 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.05 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.01 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.97 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.97 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.95 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.92 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 94.86 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.86 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.83 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 94.81 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.8 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.8 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.79 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.7 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 94.69 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 94.67 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 94.66 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.66 |
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=223.35 Aligned_cols=206 Identities=36% Similarity=0.657 Sum_probs=149.4
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+|+|.+|+|||||+|+|+|...+.......++|..+....+.+ .+..+.||||||+.++.....++.+.+
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHH
Confidence 4556779999999999999999999999887555444447788888888888 889999999999999877777788889
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..++..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|.+.. ..+.+++.. ....+..++
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~ 178 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLM 178 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHH
Confidence 998888899999999999998 7777888888888888876666799999999999877 677777664 345688999
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
..|+.++++|++... ++....++.+|+..|..++.++++.+|..+++.+++
T Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 179 DIFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HHHSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred HHcCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 999999999988763 456778999999999999999899999999888776
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=215.60 Aligned_cols=206 Identities=31% Similarity=0.554 Sum_probs=163.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+|+|++|+|||||+|+|+|...+.....+.++|..+....+.+ .+..+.||||||+.++......+.+.+
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 4556679999999999999999999999886655444444777777777777 889999999999998776666666677
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe-ccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT-GGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n-k~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..+++++|++|||+|++ +++..+..++..+.+.++.....|+++|+| |+|+.. ..+..++.......+..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHH
Confidence 777777889999999999998 688888888899999888765567888877 999873 346666554344456778
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
+..++.++..|.+ ..+||.++.|++++++.|.+++..+.+..|+.+++.+..
T Consensus 172 ~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T 2xtp_A 172 VAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ 223 (260)
T ss_dssp HHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC-
T ss_pred HHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 8888888766766 778999999999999999999988776889888776665
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=174.65 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=123.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++..........+++|.......+....+..+.||||||+.++..... +....
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 3456799999999999999999999998732233344567777776666532678999999999887643322 11122
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+..........+|++|||+|++++++..+..++..+.. ...|+++|+||+|+... ..+...... +...
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~ 172 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTR--QESINALRA-----TQKS 172 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCCh--hhHHHHHHH-----HHHH
Confidence 22222233456899999999998888877777777765 23599999999998865 444333332 2333
Q ss_pred HHh-------cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQL-------CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~-------~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+.. .+.+++. +||.++.|+.+|+++|.+.++.
T Consensus 173 l~~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 173 LDAYRDAGYAGKLTVQL------FSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHTCCSCEEEEE------EBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHhhhhcccCCCCeEEE------eecCCCcCHHHHHHHHHHhcCc
Confidence 332 2334444 6888899999999999988754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=181.06 Aligned_cols=182 Identities=15% Similarity=0.286 Sum_probs=130.2
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCChHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-GQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
++++.+...|+++|.+|||||||+|+|+|..... ....+++|.......+.. . +..+.||||||+.++. ....+.+
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~ 80 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-ISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGH 80 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc-cCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHH
Confidence 3455567999999999999999999999987532 233456666666565665 6 8899999999998754 2244556
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHH-HHHHHHHhCCCccCeEEEEEeccCCC-CCChhcHHHHhhhcCCchH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAA-IHILESLFGKKISDYMIVVFTGGDEL-EDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~nk~D~~-~~~~~~~~~~~~~~~~~~~ 170 (311)
.+...+..++..+|+++||+|++++.+..+... +..+.. ...|+++|+||+|+. .. ..+.....
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~--~~~~~~~~------- 146 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPA--KNVLPLID------- 146 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSG--GGGHHHHH-------
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCH--HHHHHHHH-------
Confidence 666667777888999999999997788777665 555554 235999999999987 33 33333322
Q ss_pred HHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 171 KEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 171 ~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
.+...++ ..+++ +||.++.|+++|++.|...+++ +...|+.+
T Consensus 147 -~l~~~~~~~~~i~~------vSA~~g~gv~~L~~~l~~~l~~-~~~~~~~~ 190 (308)
T 3iev_A 147 -EIHKKHPELTEIVP------ISALKGANLDELVKTILKYLPE-GEPLFPED 190 (308)
T ss_dssp -HHHHHCTTCCCEEE------CBTTTTBSHHHHHHHHHHHSCB-CCCSSCTT
T ss_pred -HHHHhccCCCeEEE------EeCCCCCCHHHHHHHHHHhCcc-CCCCCCcc
Confidence 2333333 34554 7889999999999999998865 45556554
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=162.54 Aligned_cols=171 Identities=18% Similarity=0.292 Sum_probs=110.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
|....++|+|+|.+|+|||||+|+|++..........++.|.....+.+ +..+.+|||||+.+...... ....+.
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~~-~~~~~~ 93 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKS-EREAWG 93 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHH-HHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCHH-HHHHHH
Confidence 4456799999999999999999999998643333334455665554432 34799999999987654432 122233
Q ss_pred HHHHh---ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGM---AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~---~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+.. ....+|++++|+|++++.+..+..++.++.. ...|+++|+||+|+... ..+...... +..
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~ 161 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPK--GKWDKHAKV-----VRQ 161 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh--HHHHHHHHH-----HHH
Confidence 33332 2345699999999987888777777777665 22599999999998865 444433222 333
Q ss_pred HHHh-cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 173 ILQL-CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 173 ~~~~-~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.. .+..++. +|+.++.|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 162 TLNIDPEDELIL------FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHTCCTTSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHcccCCCceEE------EEccCCCCHHHHHHHHHHHh
Confidence 2221 2344554 78888899999999998765
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=173.93 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|+||+|||||+|+|+|...... ...+++|.......+.. .+..+.||||||+.++. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 47899999999999999999999876322 22234555444444444 78899999999998753 244555666677
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc-HHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET-LEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|+++||+|++++++..+..++..+....+ ..|+++|+||+|+... .. +.+.+.. + ++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 78899999999999997888877777777765431 2599999999998765 33 3332222 1 12
Q ss_pred -CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 179 -NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 179 -~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
..+++ +||.++.|+++|++.|...+++ +...|+.+
T Consensus 146 ~~~~~~------iSA~~g~gv~~l~~~l~~~l~~-~~~~y~~~ 181 (301)
T 1wf3_A 146 EAEPRM------LSALDERQVAELKADLLALMPE-GPFFYPED 181 (301)
T ss_dssp TSEEEE------CCTTCHHHHHHHHHHHHTTCCB-CCCSSCTT
T ss_pred cCcEEE------EeCCCCCCHHHHHHHHHHhccc-CCCCCCcc
Confidence 23333 7889999999999999887754 44455544
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=158.25 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=119.0
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSK 92 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~ 92 (311)
.|....++|+|+|.+|+|||||+|+|++... .......+.|....... .+..+.+|||||+........ ....
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHH
Confidence 3445678999999999999999999999873 22233345555544333 355789999999876543322 1122
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..........+|++++|+|++.+.+..+..++.++... ..|+++|+||+|+... ......... +..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~ 160 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM--SERAKKLEE-----HRK 160 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh--HHHHHHHHH-----HHH
Confidence 2333333334667999999999877777777777777653 2599999999998865 444444433 455
Q ss_pred HHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+...+ .+++. +||.++.|+++++++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 161 VFSKYGEYTIIP------TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHSSCCSCEEE------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHhhcCCCceEE------EecCCCCCHHHHHHHHHHHhhc
Confidence 555433 35555 7888899999999999987743
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=163.03 Aligned_cols=181 Identities=16% Similarity=0.108 Sum_probs=110.6
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
|......++|+|+|.+|+|||||+|+|++.... ....++.|.......+.+ .+..+.||||||+.+..........
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~- 98 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE- 98 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-
Confidence 343467799999999999999999999998753 223345666666666666 7789999999998753221111110
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
. ..+...+..+|++|||+|++++.+......+.++..+.......|+++|+||+|+... ..+...... .+..+
T Consensus 99 ~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~ 171 (228)
T 2qu8_A 99 M-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQI 171 (228)
T ss_dssp H-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHH----HHHHH
T ss_pred H-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHH----HHHHH
Confidence 1 1112235678999999999855442222223333333322123699999999998755 222211110 13444
Q ss_pred HHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+ ..++. +||.++.|+++++++|.+.+..
T Consensus 172 ~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 172 LDNVKNPIKFSS------FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHCCSCEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhcCCCceEEE------EecccCCCHHHHHHHHHHHHHH
Confidence 45444 34444 7888899999999999877643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=165.60 Aligned_cols=198 Identities=20% Similarity=0.298 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++....... ...++|.......+.. .+..+.||||||+.++..........+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35699999999999999999999998753322 2345566666666666 788999999999987654334444444433
Q ss_pred HHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+ ..+++|++|||+|++ .+++..+..++..+...++.+...|+++|+||+|+....+..+++++.. ....+...+..
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~ 191 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS 191 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH
Confidence 2 346799999999886 3677777889999998888766579999999999876533466666553 22233433331
Q ss_pred c----------CCcEEEecCCchhh---------hhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 177 C----------DNRCVLFDNKTKDA---------AKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 177 ~----------~~~~~~f~~~~~~s---------a~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
. ..++.+..+..... .........|+..|.+++...+...+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~ 254 (270)
T 1h65_A 192 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDK 254 (270)
T ss_dssp HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCH
T ss_pred hhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCH
Confidence 0 12444444331110 01111356999999999877666665544
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=165.66 Aligned_cols=155 Identities=19% Similarity=0.276 Sum_probs=115.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|+|...... ....++|.......+.+ .+..+.||||||+.++....+...+.+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3569999999999999999999999875222 22355666677777777 888999999999988765555555555555
Q ss_pred HHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+ ..+++|++|||++++ .+++..+..++..+...++.....|+++|+||+|+.......+++++.. ....+..++..
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~ 188 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA 188 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence 4 245789999999886 4577777889999999998877779999999999865544667777654 22335555544
Q ss_pred c
Q 021534 177 C 177 (311)
Q Consensus 177 ~ 177 (311)
+
T Consensus 189 ~ 189 (262)
T 3def_A 189 G 189 (262)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=168.50 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=103.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCC----CCCcceeEEEEEEEee-CCc--eEEEEeCCCCCCCCCCh---H
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAG----SSGVTKTCEMQRTMLK-AGQ--VVNVIDTPGLFDSSADP---E 88 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~----~~~~T~~~~~~~~~~~-~~~--~l~liDTPG~~~~~~~~---~ 88 (311)
..++|+|+|.+|+|||||+|+|++...+..... ....|.........+. ++. .++||||||++++.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 458999999999999999999999887654321 0123333333333321 333 89999999998764332 2
Q ss_pred HHHHHH----HHHHHh---------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCC
Q 021534 89 FVSKEI----VKCIGM---------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 154 (311)
Q Consensus 89 ~~~~~~----~~~~~~---------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 154 (311)
.+...+ ..++.. ...++|+++|+++.+ +++...+..+++.+.. ..|+++|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~- 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH-
Confidence 222111 222221 123478999999765 5788888887777654 3599999999998866
Q ss_pred hhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 155 DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..+... +...+..++.+++. .|+.++.++.++++.|.+.++
T Consensus 160 -~e~~~~~~~-----i~~~l~~~~i~v~~------~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 -EECQQFKKQ-----IMKEIQEHKIKIYE------FPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCCC------C-----------CHHHHHTCS
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeEEc------CCCCCChhHHHHHHHHhcCCC
Confidence 555555444 56666666777665 466778999999999988664
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=157.35 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=110.1
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~ 90 (311)
......+..++|+|+|.+|+|||||+|+|++......... ..+.......+... ....+.||||||......
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----- 86 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----- 86 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCC--ceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----
Confidence 3334445578999999999999999999998764222222 22222333333331 234889999999765322
Q ss_pred HHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 91 SKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. ..
T Consensus 87 ------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~-------~~ 149 (189)
T 2gf9_A 87 ------ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDE--RVVPA-------ED 149 (189)
T ss_dssp ------SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG--CCSCH-------HH
T ss_pred ------hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--cCCCH-------HH
Confidence 23455788999999999985433222 3455556554322 3599999999998654 11110 11
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+....+..++. +|+.++.|+++++++|.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 150 GRRLADDLGFEFFE------ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 34445555666665 7888899999999999877643
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=167.03 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=121.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP--EFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~--~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+|+|+|... ....++++|.......+.+ .+..+.||||||+++..... ....+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 48999999999999999999999875 3344678888888888887 78899999999998865211 1122222222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+.....+|++|+|+|+++ +. ....+...+.+. ..|+++|+||+|+... ..+. .....+....
T Consensus 80 -~~~~~~~d~ii~VvD~~~-~~-~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~--~~~~--------~~~~~l~~~l 141 (274)
T 3i8s_A 80 -YILSGDADLLINVVDASN-LE-RNLYLTLQLLEL-----GIPCIVALNMLDIAEK--QNIR--------IEIDALSARL 141 (274)
T ss_dssp -HHHHTCCSEEEEEEEGGG-HH-HHHHHHHHHHHH-----TCCEEEEEECHHHHHH--TTEE--------ECHHHHHHHH
T ss_pred -HHhhcCCCEEEEEecCCC-hH-HHHHHHHHHHhc-----CCCEEEEEECccchhh--hhHH--------HHHHHHHHhc
Confidence 223478999999999983 32 234444555543 2599999999997643 1111 1134444555
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC--CCCCcHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG--GQPYTDEIFAEL 225 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~--~~~~~~~~~~~~ 225 (311)
+.++++ +||.++.|+++|++.|.+.++... ...|..++...+
T Consensus 142 g~~~i~------~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~ 185 (274)
T 3i8s_A 142 GCPVIP------LVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEA 185 (274)
T ss_dssp TSCEEE------CCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHH
T ss_pred CCCEEE------EEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHH
Confidence 777776 788999999999999988765432 223555543333
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=161.72 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=115.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+|+|++|||||||+|+|+|... .....+++|.......+.+ .+..+.||||||+.+...... .+.+.. .+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~~~~~~-~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSI--DELIAR-NF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCH--HHHHHH-HH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCH--HHHHHH-Hh
Confidence 48999999999999999999999875 3335677888888888888 888999999999987544322 121221 22
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
....++|++++|+|+++ .. ....++..+.+. + ..|+++|+||+|+... ... ......+....+.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~~-~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~~~--~~~--------~~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-LM-RNLFLTLELFEM-E---VKNIILVLNKFDLLKK--KGA--------KIDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-HH-HHHHHHHHHHHT-T---CCSEEEEEECHHHHHH--HTC--------CCCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCCc-ch-hhHHHHHHHHhc-C---CCCEEEEEEChhcCcc--ccc--------HHHHHHHHHHcCC
Confidence 22468999999999983 32 222333333332 2 1599999999997633 111 1113455556677
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
++++ +|+.++.|+.++++.+...+...
T Consensus 141 ~~~~------~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 141 PVIP------TNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CEEE------CBGGGTBTHHHHHHHHHHHHHTC
T ss_pred cEEE------EEeCCCCCHHHHHHHHHHHHhcc
Confidence 7776 78899999999999999887653
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=158.83 Aligned_cols=170 Identities=18% Similarity=0.090 Sum_probs=107.0
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
-++...+..++|+|+|.+|+|||||+|+|++...........+.+.......+.. ....+.||||||..+.
T Consensus 15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~-------- 85 (192)
T 2fg5_A 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERF-------- 85 (192)
T ss_dssp ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGG--------
T ss_pred ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhh--------
Confidence 3344455679999999999999999999998764222222233333332222222 3458999999996542
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ .+
T Consensus 86 ---~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~v~~~---------~~ 151 (192)
T 2fg5_A 86 ---HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSDIREVPLK---------DA 151 (192)
T ss_dssp ---GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HH
T ss_pred ---HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCHH---------HH
Confidence 1222334678899999999985433222 3455556554422 3599999999998643111111 13
Q ss_pred HHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+....+..++. +|+.++.|++++++.|.+.+.
T Consensus 152 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 152 KEYAESIGAIVVE------TSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHTTTCEEEE------CBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHcCCEEEE------EeCCCCcCHHHHHHHHHHHHH
Confidence 4455555666655 788889999999999987653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=163.22 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~~~~~~~ 98 (311)
++|+|+|.+|||||||+|+|+|... ....++++|.......+.+ .+..+.||||||+.+...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~--~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ--RVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE--EEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 5899999999999999999999875 3334578888888888887 888999999999987653210 1222233222
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.....+|++|+|+|+++ +. ....+...+.+ ...|+++|+||+|.... ..+. .....+....+
T Consensus 79 -~~~~~~d~vi~VvDas~-~~-~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg 140 (256)
T 3iby_A 79 -VIDLEYDCIINVIDACH-LE-RHLYLTSQLFE-----LGKPVVVALNMMDIAEH--RGIS--------IDTEKLESLLG 140 (256)
T ss_dssp -HHHSCCSEEEEEEEGGG-HH-HHHHHHHHHTT-----SCSCEEEEEECHHHHHH--TTCE--------ECHHHHHHHHC
T ss_pred -HhhCCCCEEEEEeeCCC-ch-hHHHHHHHHHH-----cCCCEEEEEEChhcCCc--CCcH--------HHHHHHHHHcC
Confidence 11278999999999983 22 22233333332 23599999999997643 1111 11344445557
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.++++ +||.++.|+++|++.|.+.
T Consensus 141 ~~vi~------~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVIP------IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHTC
T ss_pred CCEEE------EECCCCCCHHHHHHHHHhh
Confidence 77776 8899999999999999887
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=154.59 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=109.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ .+ ..+.+|||||.....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 72 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFR----------- 72 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCS-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC--CccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhh-----------
Confidence 45699999999999999999999988752 233345555555566666 55 579999999955422
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+... ..+.. .....+.
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~~ 140 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPER--KVVET-------EDAYKFA 140 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchh--cccCH-------HHHHHHH
Confidence 223445788999999999985433333 334555554432 3699999999997654 21111 1123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+.+++. +|+.++.|+++++++|.+.+..
T Consensus 141 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 141 GQMGIQLFE------TSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 555666665 7888999999999999877643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=150.59 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++..... ...++.+.......+.+ ++. .+.+|||||..+ +..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND--KHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS--SCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc--CCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhh
Confidence 45899999999999999999999876422 12223333333334444 333 788999999654 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++.+... ..++..+....+. ..|+++|+||+|+........+ ....+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSIQ---------EAESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCHH---------HHHHHHH
Confidence 34556789999999999985433222 3455556555433 3599999999998654111111 1344555
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||.++.|+++++++|.+.+.
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHYH------TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEE------ecCCCCCCHHHHHHHHHHHHh
Confidence 55666655 788889999999999987664
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=155.63 Aligned_cols=164 Identities=17% Similarity=0.177 Sum_probs=109.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
+..++|+|+|.+|+|||||+|+|++..... ...++.|.......+.+ ++..+.+|||||..+... .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~ 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE--QEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTT-----------M 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC--SSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSC-----------S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc--CCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHH-----------H
Confidence 456899999999999999999999877532 22334444555555666 788999999999766432 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++|+|+|++++........+..+.. ...|+++|+||+|+.......+...+.. ...+...+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKA-----ANVPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG-----GSCCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh-----CCCCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 2345778999999999986666555555544322 2358999999999875421222222221 00011111
Q ss_pred C--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 D--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+ ..++. +||.++.|+++++++|.+.+..
T Consensus 142 ~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 142 GGDTIFCK------LSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TSSEEEEE------CCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCcccEEE------EecCCCCCHHHHHHHHHHhhhh
Confidence 2 13333 7888899999999999887754
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=153.14 Aligned_cols=175 Identities=12% Similarity=0.049 Sum_probs=108.1
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
..+++....++|+|+|.+|+|||||+|+|++....... ...|.......+.. .+..+.||||||...
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~--------- 75 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFEK-GRVAFTVFDMGGAKK--------- 75 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEEE-TTEEEEEEEECCSGG---------
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEEe-CCEEEEEEECCCCHh---------
Confidence 34566778899999999999999999999998753211 12233344455555 788999999999654
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC------CCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG------KKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~------~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+...+..++..+|++|+|+|++++.+-.. ..++..+..... .....|+++|+||+|+... ....+....
T Consensus 76 --~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~ 151 (199)
T 4bas_A 76 --FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI 151 (199)
T ss_dssp --GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH
T ss_pred --HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH
Confidence 33344566889999999999985533222 223333222110 0013599999999998765 333333222
Q ss_pred cCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 165 ECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
. .+..+....+..++. +||.++.|+++++++|.+.+...
T Consensus 152 ~---~~~~~~~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 152 L---DLTTLMGDHPFVIFA------SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp H---THHHHHTTSCEEEEE------CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred h---cchhhccCCeeEEEE------eeCCCccCHHHHHHHHHHHHHHH
Confidence 0 012222333444444 78888999999999999877553
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=153.35 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=105.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+..++|+|+|.+|+|||||+|+|++....... .+..+.......+.. .+ ..+.||||||....
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------- 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERF----------- 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGT-----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCeEEEEEEEECCCChHh-----------
Confidence 345799999999999999999999987652221 222222222333333 33 47899999995542
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ .+..+
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~ 146 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTYE---------EAKQF 146 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHHHH
Confidence 1222334567899999999985533333 3455556555433 3599999999998643111111 13445
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
....+..++. +|+.++.|+++++++|.+.+
T Consensus 147 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 147 AEENGLLFLE------ASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHTTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 5555666665 78888999999999988765
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=149.62 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|++++.... .....++.|.......+.+ .+..+.+|||||...... ....+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999987632 1223345566666666777 788999999999876432 12334444455
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|+++||+|++++++..+..+...+.. . ..|+++|+||+|+.... .... .+. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~----~~p~ilv~nK~Dl~~~~-~~~~------------~~~-~~~~~ 136 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-K----GKPVILVATKVDDPKHE-LYLG------------PLY-GLGFG 136 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-H----TCCEEEEEECCCSGGGG-GGCG------------GGG-GGSSC
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-c----CCCEEEEEECcccccch-HhHH------------HHH-hCCCC
Confidence 6788999999999997777777666666665 2 25899999999976441 1111 111 2233
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.++. +|+.++.|+++++++|.+.+
T Consensus 137 ~~~~------~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 137 DPIP------TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp SCEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred CeEE------EecccCCChHHHHHHHHHhC
Confidence 4444 78889999999999987653
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=157.12 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=103.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
......++|+|+|.+|+|||||+|+|++...+... ...|.......+.+ ++..+.||||||....
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~----------- 80 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRY----------- 80 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTT-----------
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHH-----------
Confidence 34557799999999999999999999987632222 22344455566666 7789999999996652
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ...++. ..
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~---------~~ 149 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKV---------SQ 149 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHH---------HH
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHH---------HH
Confidence 2223455778899999999985422222 2333333332110 023599999999998754 222221 11
Q ss_pred HH--Hh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 173 IL--QL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 173 ~~--~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+ .. .+..++. +||.++.|+++++++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 150 LLCLENIKDKPWHICA------SDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHTGGGCCSSCEEEEE------CBTTTTBTHHHHHHHHHHHC
T ss_pred HhChhhccCCceEEEE------ccCCCCcCHHHHHHHHHHHH
Confidence 12 11 1223333 78888999999999998765
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=153.52 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=104.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
..++|+|+|.+|+|||||+|+|++...........+.+... ..+.+. ....+.+|||||+... ...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERF-----------RAL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhh-----------hcc
Confidence 45899999999999999999999877432222222333222 233331 2357899999997542 122
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+.....+ ..|+++|+||+|+... ..+.. .....+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~--~~v~~-------~~~~~~~~~ 140 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDV--REVME-------RDAKDYADS 140 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccc--cccCH-------HHHHHHHHH
Confidence 2334678899999999985544333 4455666654332 3589999999998754 22110 012344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +|+.++.|++++++.|.+.+
T Consensus 141 ~~~~~~~------~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 141 IHAIFVE------TSAKNAININELFIEISRRI 167 (170)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred cCCEEEE------EeCCCCcCHHHHHHHHHHHH
Confidence 5666655 78888999999999998754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=153.16 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=112.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ ++ ..+.||||||.....
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~---------- 79 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYT--ESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR---------- 79 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC----------
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh----------
Confidence 345689999999999999999999987652 222344555555555655 55 479999999965422
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. .....+
T Consensus 80 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~ 147 (196)
T 3tkl_A 80 -TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK--KVVDY-------TTAKEF 147 (196)
T ss_dssp -TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT--CCSCH-------HHHHHH
T ss_pred -hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--cccCH-------HHHHHH
Confidence 122334678899999999985433222 4455666655433 3599999999998755 22111 113445
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+.+++. +||.++.|+++++++|.+.+..
T Consensus 148 ~~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 148 ADSLGIPFLE------TSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HHHTTCCEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 5566767766 7888899999999999887754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=161.16 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=114.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|++|+|||||+|+|+|.... ....+++|.......+.. .+..+.||||||+.+...... .+.+....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence 3589999999999999999999998753 334568888887777777 788999999999987643321 12222222
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
. ....+|++++|+|++ .+... ..++..+.+ ...|+++|+||+|+... ..+ ......+....+
T Consensus 79 ~-~~~~~d~ii~V~D~t-~~~~~-~~~~~~l~~-----~~~pvilv~NK~Dl~~~--~~i--------~~~~~~l~~~lg 140 (258)
T 3a1s_A 79 L-LKGDADLVILVADSV-NPEQS-LYLLLEILE-----MEKKVILAMTAIDEAKK--TGM--------KIDRYELQKHLG 140 (258)
T ss_dssp H-HHSCCSEEEEEEETT-SCHHH-HHHHHHHHT-----TTCCEEEEEECHHHHHH--TTC--------CBCHHHHHHHHC
T ss_pred H-hhcCCCEEEEEeCCC-chhhH-HHHHHHHHh-----cCCCEEEEEECcCCCCc--cch--------HHHHHHHHHHcC
Confidence 1 125789999999998 44322 223333332 23599999999997643 111 112455556667
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+++. +||.++.|+++|++.|.+...
T Consensus 141 ~~vi~------~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 IPVVF------TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp SCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEE------EEeeCCcCHHHHHHHHHHHhh
Confidence 77776 788899999999999998775
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=151.75 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=102.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
..++|+|+|.+|+|||||+|+|++...........+.+ .....+.+. .+..+.+|||||..+. ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA--FLTQTVCLDDTTVKFEIWDTAGQERY-----------HSL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEeCCCcHHh-----------hhh
Confidence 35899999999999999999999766422222222222 222333331 2447899999996542 122
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 140 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVDFQ---------EAQSYADD 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccCHH---------HHHHHHHH
Confidence 3334678899999999985433222 3444555554333 3589999999998643111111 13344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +||.++.|+++++++|.+.+
T Consensus 141 ~~~~~~~------~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 141 NSLLFME------TSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHTS
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 5666655 78888999999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=152.43 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
.+.+..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+ ++ ..+.||||||...
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------- 87 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQER---------- 87 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGG----------
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHH----------
Confidence 445567899999999999999999999876522 22233344444455555 44 3789999999543
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+...+..++..+|++|+|+|++++.+..+ ..++..+...... ..|+++|+||+|+........+ ...
T Consensus 88 -~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~~v~~~---------~~~ 155 (192)
T 2il1_A 88 -FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREITRQ---------QGE 155 (192)
T ss_dssp -GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHH
T ss_pred -HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHH
Confidence 12223333556799999999985544333 3445556554432 3599999999998643111111 123
Q ss_pred HHHHhc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 172 EILQLC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 172 ~~~~~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.... +..++. +||.++.|+++++++|.+.+.
T Consensus 156 ~~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 156 KFAQQITGMRFCE------ASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHTSTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 333432 444544 788899999999999987664
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=152.34 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=104.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG---------------------------- 69 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~---------------------------- 69 (311)
+..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+ .+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEET-TC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence 456999999999999999999999876421 11222222333333333 22
Q ss_pred -----------ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCc
Q 021534 70 -----------QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKI 137 (311)
Q Consensus 70 -----------~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~ 137 (311)
..+.||||||...... ....++..+|++|||+|++++.+..+ ..++..+....+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--- 147 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--- 147 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence 6799999999654321 12234678899999999985543333 344555555443
Q ss_pred cCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 138 SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 138 ~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.|+++|+||+| ........+ .+..++...+.+++. +||.++.|+.+++++|.+.+.+
T Consensus 148 -~piilv~NK~D-~~~~~~~~~---------~~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 -YIIILVANKID-KNKFQVDIL---------EVQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CEEEEEEECTT-CC-CCSCHH---------HHHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred -CcEEEEEECCC-cccccCCHH---------HHHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 59999999999 432111222 134455556666665 7888899999999999876643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=149.06 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++ ..+.||||||..+ +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK--DDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC--TTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 34599999999999999999999987642 222233343444444555 44 4889999999543 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTFL---------EASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHHHHH
Confidence 445667889999999999985433322 3445555554332 3599999999998643111111 123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +|+.++.|+.++++.+.+.+.
T Consensus 143 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 143 QENELMFLE------TSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHTTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 555666655 788889999999999887654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=154.46 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=103.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+..++|+|+|.+|+|||||+|+|++........ +..+.......+... .+..+.||||||......
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------- 89 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA----------- 89 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-----------
Confidence 345899999999999999999999876522222 222222222233331 234789999999876421
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+......... ....+..
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 158 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPTE---------EARMFAE 158 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCHH---------HHHHHHH
Confidence 12233677899999999985433222 334444443322 24599999999998653111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||.++.|++++++.|.+.+.
T Consensus 159 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 159 NNGLLFLE------TSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp HTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55666655 688888999999999887653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=147.59 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ...++.+.......+.. ++. .+.+|||||... +.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 4569999999999999999999998765221 12233333333333344 443 789999999553 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++++|+|++++.+..+ ..++..+..... ...|+++|+||+|+.........+ ...+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 143 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKRED---------GEKLA 143 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHH---------HHHHH
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHH---------HHHHH
Confidence 334556778999999999985433332 345556665543 235999999999987541111111 23344
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+++++++|.+.+..
T Consensus 144 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 144 KEYGLPFME------TSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHTCCEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444666665 7888899999999999887643
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=151.06 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++. .+.||||||... +..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP--PGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--TTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 4589999999999999999999987642 122233334444445555 553 789999999543 344
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+..
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~---------~~~~~~~ 159 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQQ---------RAEEFSE 159 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCHH---------HHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHHHH
Confidence 45667889999999999985433222 3455556554432 3589999999998643111111 1233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|+++++..|.+.+..
T Consensus 160 ~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 160 AQDMYYLE------TSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44666665 7888999999999998876643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=149.99 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|.+|+|||||+|++++.... . ...|.......+.+ .+..+.+|||||... +...+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-T----TIPTIGFNVETVTY-KNLKFQVWDLGGLTS-----------IRPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-C----CCCCSSEEEEEEEE-TTEEEEEEEECCCGG-----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-C----cCCcCccceEEEEE-CCEEEEEEECCCChh-----------hhHHH
Confidence 4599999999999999999999876642 1 12234455556666 788999999999654 22334
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH-HHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-EILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~ 175 (311)
..++..+|++++|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... +. ..+.
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~~~~~~ 139 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANS-----LGLPALK 139 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCT
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHH-----hCchhcc
Confidence 566789999999999985533222 11222222221 123599999999998765 222222111 00 0011
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|+++++++|.+.+.+
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 140 DRKWQIFK------TSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TSCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCceEEEE------CcCCCCcCHHHHHHHHHHHHhh
Confidence 11223333 7888899999999999887753
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=152.52 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=109.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ ++. .+.||||||......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 72 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT--NDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT---------- 72 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC--TTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH----------
Confidence 34589999999999999999999987652 222233344444444555 443 799999999765322
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ ....+.
T Consensus 73 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 140 (206)
T 2bcg_Y 73 -ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYD---------VAKEFA 140 (206)
T ss_dssp -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred -HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHHH
Confidence 23445788999999999985443333 3445555554432 3599999999998754111111 123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+.+++. +||.++.|+++++.+|.+.+.+
T Consensus 141 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 141 DANKMPFLE------TSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HHTTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 555666665 7888899999999999887654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=154.30 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=104.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||......
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 85 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS--------- 85 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC---------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh---------
Confidence 44678999999999999999999998764222 1222233333344444 44 4889999999654321
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. .....+
T Consensus 86 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~--~~v~~-------~~~~~~ 152 (191)
T 2a5j_A 86 --ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESR--RDVKR-------EEGEAF 152 (191)
T ss_dssp --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG--CCSCH-------HHHHHH
T ss_pred --hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCc--cccCH-------HHHHHH
Confidence 12234567899999999985433322 3455555554332 3599999999998643 11110 012344
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
....+..++. +||.++.|+++++++|.+.+.
T Consensus 153 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 153 AREHGLIFME------TSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4455666665 688888999999999887653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=152.85 Aligned_cols=161 Identities=13% Similarity=0.081 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++........ +..+.......+.. . ...+.||||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYR-NDKRIKLQIWDTAGLER-----------YRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CccceeEEEEEEEE-CCeEEEEEEEECCCchh-----------hcc
Confidence 45899999999999999999999887522222 22222333333333 3 34889999999653 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. .....+..
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~ 141 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDE--RVVSS-------ERGRQLAD 141 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTS--CCSCH-------HHHHHHHH
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcc--cccCH-------HHHHHHHH
Confidence 45566788999999999985433222 3445555554322 3599999999998754 21110 11334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.++..++. +||.++.|+.+++++|.+.+.
T Consensus 142 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 142 HLGFEFFE------ASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHTCEEEE------CBTTTTBSSHHHHHHHHHHHH
T ss_pred HCCCeEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 55666665 788889999999999887654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-21 Score=153.07 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=108.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHH-HHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSK-EIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~-~~~~~ 97 (311)
+..+|+|+|.+|+|||||+|+|++..... ....+++|.......+.+ ++..+.+|||||+.+... .+.. .+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~- 76 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIER- 76 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce-eeCCCCceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHH-
Confidence 34899999999999999999999876321 122345566665566666 778899999999876421 1111 1221
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++++|+|++++.+..+..++..+...... ..|+++|+||+|+.... .. +. ...
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~-~~---~~------------~~~ 138 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGET-LG---MS------------EVN 138 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCC-CE---EE------------EET
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCcch-hh---hh------------hcc
Confidence 12345788999999999866665556666666665432 35999999999975320 00 00 011
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +||.++.|++++++.|.+.+
T Consensus 139 ~~~~~~------~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 139 GHALIR------LSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TEEEEE------CCTTTCTTHHHHHHHHHHHC
T ss_pred CCceEE------EeCCCCCCHHHHHHHHHHHh
Confidence 223333 78899999999999998765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=150.61 Aligned_cols=163 Identities=19% Similarity=0.137 Sum_probs=105.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|+|++........ ++.+.......+.+ . ...+.||||||....
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~----------- 74 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE--STIGAAFFSQTLAV-NDATVKFEIWDTAGQERY----------- 74 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC--CCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGG-----------
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCC--CCceeEEEEEEEEE-CCEEEEEEEEeCCCChhh-----------
Confidence 3456899999999999999999999876532222 22222233333333 3 347999999995431
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|+|+|++++.+.. ...++..+...... ..|+++|+||+|+........+ .+..+
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~---------~~~~~ 143 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTAE---------DAQTY 143 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH---------HHHHH
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCHH---------HHHHH
Confidence 222333467889999999998554422 24555666654432 3589999999998654111111 13444
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
....+.+++. +|+.++.|+++++++|.+.+.
T Consensus 144 ~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 144 AQENGLFFME------TSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHTTCEEEE------CCSSSCTTHHHHHHHHHHTCC
T ss_pred HHHcCCEEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 5555666655 688888999999999987653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=172.91 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.||+|||||+|+|+|..... ....+++|.......+.+ .+..+.||||||+.... .+.+...+...+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~-v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce-ecCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 589999999999999999999987421 234568888888888888 89999999999987521 12233445666666
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|++|+|+|++.+++..+..+..++++. .+|+++|+||+|.... ..... ...+. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~~ 140 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLRE----FEREV-------KPELY-SLGFG 140 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSSC
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCCC
Confidence 78899999999999878888887777777652 2599999999996421 11111 01111 2232
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+++ +||.++.|+.+|++.|.+.+++
T Consensus 141 ~~~~------iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 EPIP------VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp SCEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CEEE------EeccCCCCHHHHHHHHHHhccc
Confidence 3343 7999999999999999988764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=152.06 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+|++++........ +..+.......+.+ ++ ..+.+|||||.... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-----------~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCChhh-----------hhh
Confidence 4899999999999999999999876422222 22233333333344 33 37999999995532 122
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh-hcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+..... ..+. ......+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~v~-------~~~~~~~~~ 139 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQEGGERKVA-------REEGEKLAE 139 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGSSCCCCSC-------HHHHHHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccccccccCCC-------HHHHHHHHH
Confidence 3344678899999999985433322 3445555554432 358999999999875410 1110 011233444
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +||.++.|+++++++|.+.+
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 140 EKGLLFFE------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHTTS
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 45666665 78888999999999987643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=150.88 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++ ..+.||||||... +.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS--ERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER-----------FR 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC--CCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------HH
Confidence 44689999999999999999999977642 111122223333444555 44 4899999999643 22
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ .+..+.
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~---------~~~~~~ 161 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVSLA---------EAQSLA 161 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccCHH---------HHHHHH
Confidence 334455778999999999985433222 3455556554432 3599999999998653111111 134455
Q ss_pred HhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 175 QLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 175 ~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+. .++. +||.++.|+++++++|.+.+...
T Consensus 162 ~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 162 EHYDILCAIE------TSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp HHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 55565 5555 78889999999999998776543
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=148.91 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=105.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|++++.. . ... ..|.......+.+ ++..+.+|||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-V-DTI---SPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-C-SSC---CCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-C-Ccc---cccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 567999999999999999999999876 2 211 2233444555666 78899999999953 24445
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+... ....+.... .. +. .+..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~--~~-~~~~ 151 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-LE--LD-SIRS 151 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCS
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-hC--hh-hccC
Confidence 5667889999999999985543322 222322222111 123599999999998755 333222111 00 00 0001
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+++. +||.++.|+++++++|.+.+.+
T Consensus 152 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 152 HHWRIQG------CSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp SCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CceEEEE------eeCCCCCCHHHHHHHHHHHHHh
Confidence 1223333 7888899999999999988755
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=150.77 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++.... ....++.+.......+.+ ++ ..+.||||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN--STFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRT 72 (183)
T ss_dssp EEEEEEEECCCCC------------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhh
Confidence 4589999999999999999999976531 111122333344444555 55 5899999999643 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ ....+..
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~---------~~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKE---------RGEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHH---------HHHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCCHH---------HHHHHHH
Confidence 34566788999999999985433222 3455555554332 3599999999998754111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+.+++. +||.++.|+++++..|.+.+.
T Consensus 142 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 142 DYGIKFME------TSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHTCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55666655 788889999999999987664
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-20 Score=147.49 Aligned_cols=164 Identities=18% Similarity=0.133 Sum_probs=104.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+...++|+|+|.+|+|||||+|+|++.... ... .+++.......+.+ .+. .+.||||||..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------- 79 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----------- 79 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSC--CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CcC--CCccceEEEEEEEE-CCEEEEEEEEECCCCccc-----------
Confidence 345699999999999999999999987642 211 12222222233344 443 7899999997652
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+......... .+..+
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~ 149 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNR 149 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHH---------HHHHH
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHH---------HHHHH
Confidence 1122223456799999999984433222 3445555554432 23599999999998653111111 13445
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+.+++. +|+.++.|+++++++|.+.+..
T Consensus 150 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 150 AEQWNVNYVE------TSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHHTTCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEE------eCCCCCCCHHHHHHHHHHHHHH
Confidence 5555666665 7888889999999999877643
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=149.24 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++..... ...++.+.......+.+ ++ ..+.||||||......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~----------- 67 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRT----------- 67 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSC-----------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhh-----------
Confidence 35899999999999999999999876422 22233344444445555 44 3789999999654321
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+... ....+ ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~--------~~~~~~~ 135 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTAD--------QGEALAK 135 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC--CSCHH--------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcC--ccCHH--------HHHHHHH
Confidence 12233567899999999985433222 3555666655432 3599999999998432 11111 1233444
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|++++++.|.+.+.+
T Consensus 136 ~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 136 ELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 55666665 7888899999999999887754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-20 Score=148.66 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... .... +++.......+.+ ++ ..+.||||||......
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 69 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-DSYD--PTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI---------- 69 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC-SCCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC----------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCC--CCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH----------
Confidence 45699999999999999999999966532 2211 1111122333334 55 3678999999776422
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
....++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ....+.
T Consensus 70 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~ 138 (181)
T 3t5g_A 70 -FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE---------EGKALA 138 (181)
T ss_dssp -CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH---------HHHHHH
Confidence 12345778999999999984433222 2344444443322 23599999999998644111111 134455
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+.+++..|.+.+..
T Consensus 139 ~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 139 ESWNAAFLE------SSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp HHTTCEEEE------CCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHhCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 666766665 7889999999999999987754
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=145.68 Aligned_cols=160 Identities=19% Similarity=0.084 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++...... ....+.+.. ..+.+ .+ ..+.+|||||... +...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~-~~~~~~~~i~D~~g~~~-----------~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYD---RSIVV-DGEEASLMVYDIWEQDG-----------GRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEE-TTEEEEEEEEECC-------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceE---EEEEE-CCEEEEEEEEECCCCcc-----------chhh
Confidence 48999999999999999999998764222 122233322 22223 33 3788999999654 2223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+... ..+... ....+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~~~~ 135 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS--REVSVD-------EGRACAVV 135 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS--CCSCHH-------HHHHHHHH
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc--cccCHH-------HHHHHHHH
Confidence 3445678899999999985433222 233444443221 123599999999998754 221111 12334445
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+++. +||.++.|++++++.|.+.+..
T Consensus 136 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 136 FDCKFIE------TSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TTCEEEE------CBGGGTBSHHHHHHHHHHHHHH
T ss_pred hCCcEEE------eccCCCCCHHHHHHHHHHHHHh
Confidence 5666665 7889999999999999887643
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=170.12 Aligned_cols=178 Identities=15% Similarity=0.204 Sum_probs=114.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
+..++|+++|++|+|||||+|+|+|...... ...+++|.......+.+ ++..+.||||||+.+.....+.+ +.+...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETT-EKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-C---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCC-SHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-cCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchH-HHHHHH
Confidence 4568999999999999999999999875322 23456777776667777 88899999999986533211100 111111
Q ss_pred -HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 -IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 -~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++.+..+..++..+.. ...|+++|+||||+.+......++.... +...+..
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~ 319 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 319 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGG
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHH-----HHHhccc
Confidence 1123556799999999998888888777666654 2359999999999886522222322222 2222222
Q ss_pred -cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 177 -CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 177 -~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
.+.+++. +||.++.|+.++++.+.+.+.....
T Consensus 320 ~~~~~~~~------~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 320 LDYAPILF------MSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp GTTSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCCEEE------EecccCCCHHHHHHHHHHHHHHhhc
Confidence 2345555 7899999999999999988765443
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=152.66 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=103.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
.|....++|+|+|.+|+|||||+|+|++.... . ...+...... ...+.+. ....+.||||||......
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~-------- 87 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFS-E-GYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSI-------- 87 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCC-S-CCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCC--------
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCC-C-CCCCccceEE-EEEEEECCEEEEEEEEECCCccchHH--------
Confidence 45567899999999999999999999987652 1 1111111111 2222221 345789999999765432
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..++..+|++|+|+|++++-+... ..++..+...... ...|+++|+||+|+... ..+.. .....
T Consensus 88 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~-------~~~~~ 154 (201)
T 3oes_A 88 ---LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPE--REVQA-------VEGKK 154 (201)
T ss_dssp ---CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG--CCSCH-------HHHHH
T ss_pred ---HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccc--cccCH-------HHHHH
Confidence 23445788999999999984433222 2333333332221 23599999999998744 22111 01234
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +||.++.|++++++.|.+.+..
T Consensus 155 ~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 155 LAESWGATFME------SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHTCEEEE------CCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 44555666665 7889999999999999987755
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=152.82 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=99.7
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
..+.+....++|+|+|.+|+|||||+|.+++...... ......+.......+.......+.||||||........ +
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---~ 87 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT---F 87 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCCGGG-GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT---C
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcc-eeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh---h
Confidence 4455677889999999999999999999998643211 11111222222211211134689999999976532211 0
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
. ...++.++|++|||+|+++++......+..++..........|+++|+||+|+... ....+...........
T Consensus 88 ~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~ 160 (196)
T 3llu_A 88 D-----YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRAND 160 (196)
T ss_dssp C-----HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHH
T ss_pred h-----cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHH
Confidence 0 02235568999999999966444444555566654211224599999999998754 1111000000000122
Q ss_pred HHHH----hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQ----LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~----~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+.. ..+..++. +||.+ .|+.+++..|.+.
T Consensus 161 ~~~~~~~~~~~~~~~e------~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 161 DLADAGLEKLHLSFYL------TSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHTTCTTSCEEEEE------ECTTS-THHHHHHHHHHHH
T ss_pred HHHHhhhhcCCcceEE------EEech-hhHHHHHHHHHHH
Confidence 3333 23334444 78889 9999999988764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=147.27 Aligned_cols=161 Identities=19% Similarity=0.134 Sum_probs=100.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+|+|.+|+|||||+|+|++...........+.+. ...+.. .+ ..+.+|||||..+.. .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~ 66 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY---RQVISC-DKSICTLQITDTTGSHQFP-----------A 66 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE---EEEEEE-TTEEEEEEEEECCSCSSCH-----------H
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEECCCchhhH-----------H
Confidence 358999999999999999999998764222111112111 111222 33 378999999976531 1
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+... ..+... ....+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~ 137 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALAR 137 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHH
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHH
Confidence 12223445799999999985433222 4455566665443234699999999998654 221110 1233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 138 TWKCAFME------TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHTCEEEE------CBTTTTBSHHHHHHHHHHTC
T ss_pred HhCCeEEE------ecCCCCcCHHHHHHHHHHHH
Confidence 44555555 78888999999999998765
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=143.22 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|++|+|||||+|++++..... ... +++.......+.+ .+. .+.||||||..+. ...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYD--PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF-----------ASM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCC--CCcceeEEEEEEE-CCEEEEEEEEECCCchhh-----------HHH
Confidence 4899999999999999999999776421 111 1122222333344 443 5899999996652 111
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ..+.. .....+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~ 137 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE--REVSS-------SEGRALAEE 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc--ccCCH-------HHHHHHHHH
Confidence 2223456799999999985433222 3344444444322 23699999999997643 21111 012334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +|+.++.|+++++++|.+.+.
T Consensus 138 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFME------TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEEE------ECTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 5666665 788999999999999987764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=144.39 Aligned_cols=163 Identities=16% Similarity=0.066 Sum_probs=106.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++..... ...++.+.......+.+ ++ ..+.||||||... +.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FR 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hh
Confidence 456899999999999999999999876421 12223333333444444 44 3899999999543 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.....++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.... ...++ ...
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~ 140 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQA 140 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHH
Confidence 445567888999999999985433322 3455555554431 1235999999999986331 11111 233
Q ss_pred HHH-hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQ-LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~-~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. ..+..++. +|+.++.|++++++.|.+.+.
T Consensus 141 ~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 141 WCRDNGDYPYFE------TSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHHTTCCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 333 33455555 788889999999999987664
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=145.08 Aligned_cols=164 Identities=20% Similarity=0.127 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++...... ..+.+.+.. ...+.+ ++. .+.+|||||..... ..
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~--~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~ 68 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVY--ERTLTV-DGEDTTLVVVDTWEAEKLD---------KS 68 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEE--EEEEEE-TTEEEEEEEECCC----------------C
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCcccccee--EEEEEE-CCEEEEEEEEecCCCCccc---------hh
Confidence 3468999999999999999999998875222 223344332 233344 443 78899999976421 11
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++ ...+.
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 138 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACA 138 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHH
Confidence 122345678999999999985433222 234444444321 1235999999999987541111111 22333
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +||.++.|+++++++|.+.+.
T Consensus 139 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 139 VVFDCKFIE------TSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHTSEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 444555655 788899999999999987664
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=149.98 Aligned_cols=184 Identities=15% Similarity=0.064 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCC
Q 021534 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPG 79 (311)
Q Consensus 2 m~~~~~~~~~~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG 79 (311)
||.+..........+....++|+|+|.+|+|||||+|++++... .... .+++.......+.+ ++. .+.||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEY--IPTAFDNFSAVVSV-DGRPVRLQLCDTAG 77 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCCC--CCcccceeEEEEEE-CCEEEEEEEEECCC
Confidence 45555444334455667789999999999999999999998763 2221 12222222233444 554 677999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDET 157 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~ 157 (311)
...... .+..++.++|++|+|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ..
T Consensus 78 ~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~ 141 (201)
T 2q3h_A 78 QDEFDK-----------LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED--VK 141 (201)
T ss_dssp STTCSS-----------SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC--HH
T ss_pred CHHHHH-----------HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc--hh
Confidence 865422 133457889999999999855443332 45566666543 3699999999998754 21
Q ss_pred HHHHhhh-----cCCchHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 158 LEDYLGR-----ECPKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 158 ~~~~~~~-----~~~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+.. ........+....+. .++. +||.++.|++++++.|.+.+..
T Consensus 142 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIE------CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCCcEEEE------EecCCCCCHHHHHHHHHHHHhc
Confidence 1111100 001123344444454 5554 7888999999999998876643
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=169.68 Aligned_cols=182 Identities=14% Similarity=0.201 Sum_probs=120.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.||||||+.+....... .+.+..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~-~e~~~~ 268 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYET-TEKYSV 268 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCC-CSHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCcccc-CCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchH-HHHHHH
Confidence 34679999999999999999999998864322 23456666665666666 8889999999998653211100 011111
Q ss_pred H-HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 C-IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~-~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
. ...++..+|++|+|+|++++++..+..++..+.+ . ..|+++|+||||+........++.... +...+.
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~ 338 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-A----GKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 338 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-T----TCEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCG
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-c----CCCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcc
Confidence 1 1123566799999999998888888888877765 2 259999999999886532333333322 333332
Q ss_pred hc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCC
Q 021534 176 LC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPY 217 (311)
Q Consensus 176 ~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~ 217 (311)
.. +.+++. +||+++.|++++++.+.+.+.....+.-
T Consensus 339 ~~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 339 FLDYAPILF------MSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp GGTTSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred cCCCCCEEE------EcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 22 244555 7899999999999999988766544433
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=146.30 Aligned_cols=163 Identities=14% Similarity=0.070 Sum_probs=106.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC-----------ceEEEEeCCCCCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG-----------QVVNVIDTPGLFDSSA 85 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~-----------~~l~liDTPG~~~~~~ 85 (311)
+..++|+|+|.+|+|||||+|+|++...... ..+..+.... ...+.. .+ ..+.||||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~--- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLER--- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGG---
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHH---
Confidence 4569999999999999999999998664211 1122222222 223333 32 4899999999643
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+...+..++..+|++|+|+|++++.+... ..++..+...... ...|+++|+||+|+........+
T Consensus 83 --------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~----- 148 (195)
T 3bc1_A 83 --------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVKEE----- 148 (195)
T ss_dssp --------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSCHH-----
T ss_pred --------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHH-----
Confidence 33345566889999999999985444333 3455555554321 23599999999998653111111
Q ss_pred cCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 165 ECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+..+....+.+++. +|+.++.|++++++.|.+.+.
T Consensus 149 ----~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 149 ----EARELAEKYGIPYFE------TSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ----HHHHHHHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 134444555666665 788888999999999987664
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=151.32 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=101.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.....++|+|+|.+|+|||||+|+|++...... ...|.......+.. .+..+.||||||..+ +.
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~ 81 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FR 81 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HH
Confidence 345679999999999999999999998764211 12233344445555 788999999999532 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
..+..++..+|++|||+|++++-+... ...++...... ....|+++|+||+|+... ....+.... .. . ..
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~--~-~~ 153 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-MN--L-SA 153 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-TT--G-GG
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-hC--h-hh
Confidence 334445678999999999984433222 22223332221 123599999999998754 222222111 00 0 00
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
....+..++ .+||.++.|+++++++|.+.+
T Consensus 154 ~~~~~~~~~------~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 154 IQDREICCY------SISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCSSCEEEE------ECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCeeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 001122233 378888999999999998755
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-21 Score=156.12 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=99.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|+|++...........+.+ .....+.+ ++ ..+.||||||..+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------- 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIV-DGERTVLQLWDTAGQERF----------- 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTC-----------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEE-CCEEEEEEEEECCCCcch-----------
Confidence 4467999999999999999999999876422211122222 22233333 33 46999999996642
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..... ...........+
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~ 165 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKL 165 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--ccccc-ccccCHHHHHHH
Confidence 1122233556799999999985443333 3455556554332 3599999999997632 00000 000001112344
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
....+..++. +||.++.|+.+++.+|.+.+.
T Consensus 166 ~~~~~~~~~~------~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 166 AMTYGALFCE------TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHTCEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHcCCeEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 4555666665 788889999999999987663
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=152.01 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=107.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCCc--eEEEEeCCCCCCCCCChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~ 92 (311)
.....++|+|+|.+|+|||||+|++++.... .. ..+ |..... ..+.. ++. .+.||||||...
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~-~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------- 83 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIP-TA-YVP--TVFENFSHVMKY-KNEEFILHLWDTAGQEE---------- 83 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCC-SS-CCC--CSEEEEEEEEEE-TTEEEEEEEEEECCSGG----------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCC-Cc-cCC--eeeeeeEEEEEE-CCEEEEEEEEECCCcHH----------
Confidence 3456799999999999999999999987641 11 111 222222 22333 444 569999999543
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
+......++..+|++|+|+|++++.+..+ ..++..+..... ..|+++|+||+|+.......+. ....
T Consensus 84 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~-------~~~~ 152 (194)
T 3reg_A 84 -YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRKDGSDDVT-------KQEG 152 (194)
T ss_dssp -GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCCTTTTCCC-------HHHH
T ss_pred -HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccCCCCccc-------HHHH
Confidence 23344556889999999999985543333 345556665432 2599999999998753111111 1113
Q ss_pred HHHHHhcCCc-EEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 171 ~~~~~~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+....+.. ++. +||.++.|++++++.|.+.+..
T Consensus 153 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 153 DDLCQKLGCVAYIE------ASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHTCSCEEE------CBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEE------eecCCCCCHHHHHHHHHHHHHh
Confidence 4455555655 555 7889999999999999887654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=153.33 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=107.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++..... ...++.+.......+.+ ++ ..+.||||||......
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-------- 84 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRT-------- 84 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTC--------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH--------
Confidence 34557999999999999999999999876422 22234444455555555 55 4799999999654321
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ....+ ....
T Consensus 85 ---~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~--------~~~~ 149 (213)
T 3cph_A 85 ---ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTAD--------QGEA 149 (213)
T ss_dssp ---CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSC--CSCHH--------HHHH
T ss_pred ---HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc--ccCHH--------HHHH
Confidence 12334678899999999985433222 3555666655432 3599999999998432 11111 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+.+++. +|+.++.|+.+++++|.+.+.+
T Consensus 150 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 150 LAKELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHTCCEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44445656665 7888889999999999876643
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-21 Score=153.19 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=98.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+|+|.+|+|||||+|+|++... .......+.+ ...+.+ ++..+.||||||....
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~----------- 78 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN----VEEIVI-NNTRFLMWDIGGQESL----------- 78 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS----CEEEEE-TTEEEEEEEESSSGGG-----------
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee----eEEEEE-CCEEEEEEECCCCHhH-----------
Confidence 3455789999999999999999999998875 2212222322 234455 7789999999997542
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|||+|++++.+... ..++..+..... ....|+++|+||+|+... ....+.... .. +. .
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~--~~-~ 151 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-LK--LT-S 151 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-G
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-hC--cc-c
Confidence 2233456788999999999985533332 222322222110 133599999999998754 222221111 00 00 0
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
....+..++. +||.++.|+++++++|.+
T Consensus 152 ~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 152 IKDHQWHIQA------CCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CCSSCEEEEE------CBTTTTBTHHHHHHHHHT
T ss_pred ccCCceEEEE------ccCCCCcCHHHHHHHHHh
Confidence 0111223333 788889999999998864
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=150.39 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=101.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ..++.+.......+.+ ++ ..+.||||||... +.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FR 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HH
Confidence 4568999999999999999999998765222 2223333333444444 44 5899999999432 22
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+.
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~---------~~~~~~ 157 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPEREVTFL---------EASRFA 157 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccccccCHH---------HHHHHH
Confidence 223345678999999999985433322 3445555544332 3599999999998643111111 123344
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +||.++.|+++++.+|.+.+.
T Consensus 158 ~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 158 QENELMFLE------TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HHTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 555666655 788889999999999887654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=151.91 Aligned_cols=165 Identities=13% Similarity=0.060 Sum_probs=107.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
+..++|+|+|.+|+|||||+|+|++...........+.+.......+.. .+..+.||||||. +.+...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~-----------~~~~~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQ-----------ERYRTI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHH-----------HHCHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCCh-----------HHHHHH
Confidence 4568999999999999999999998654222111223333333322222 3457999999993 334444
Q ss_pred HHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++-+.. ...++..+...... ..|+++|+||+|+......... ....+...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 157 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVVPTE---------KGQLLAEQ 157 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHHHHH
Confidence 555678899999999998443322 24456666654422 3599999999997643111111 12334455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +|+.++.|+.++++.|.+.+.+
T Consensus 158 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 LGFDFFE------ASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 5666665 7888999999999999887644
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-20 Score=148.09 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=102.9
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~ 91 (311)
+.+....++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||..+
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~--------- 81 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVDI-DGERIKIQLWDTAGQER--------- 81 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH---------
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh---------
Confidence 34455679999999999999999999998764222 2223333344444444 44 4899999999432
Q ss_pred HHHH-HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 92 KEIV-KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 92 ~~~~-~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
+. ..+..++..+|++|+|+|++++.+... ..++..+...... ...|+++|+||+|+... ..+.. ..
T Consensus 82 --~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~-------~~ 149 (189)
T 1z06_A 82 --FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA--IQVPT-------DL 149 (189)
T ss_dssp --HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG--CCSCH-------HH
T ss_pred --hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceeCH-------HH
Confidence 22 233445678999999999985433222 3455555554422 23599999999998643 11110 01
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhH---HHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRT---EQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~---~~i~~l~~~i~~~~ 209 (311)
...+....+..++. +|+.++ .++.+++..|.+.+
T Consensus 150 ~~~~~~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 150 AQKFADTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHHHHHHTTCCEEE------CCSSSGGGGSCHHHHHHHHC---
T ss_pred HHHHHHHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHH
Confidence 23444555666665 677777 88999999887655
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=149.47 Aligned_cols=165 Identities=16% Similarity=0.094 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG---QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~---~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
...++|+|+|.+|+|||||+|+|++........ +..+.......+.+ .+ ..+.||||||......
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~--------- 71 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGK--------- 71 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCT---------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccc---------
Confidence 356999999999999999999999876421111 12223344444555 44 5899999999765321
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..++..+|++++|+|++++.+... ..++..+..........| +++|+||+|+........+ ....
T Consensus 72 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~---------~~~~ 140 (178)
T 2hxs_A 72 --MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE---------KHLR 140 (178)
T ss_dssp --THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH---------HHHH
T ss_pred --hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH---------HHHH
Confidence 12233677899999999985433322 345555555432111234 8999999998643111111 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +||.++.|+++++++|.+.+..
T Consensus 141 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 141 FCQENGFSSHF------VSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 44445656655 7888899999999999887644
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=173.16 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCc-------------ceeE--------------------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGV-------------TKTC-------------------------- 59 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~-------------T~~~-------------------------- 59 (311)
..++|+|+|.+|+|||||+|+|+|....++...+... |...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 5689999999999999999999999875554332210 1100
Q ss_pred -------------EEEEEEeeCC----ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH
Q 021534 60 -------------EMQRTMLKAG----QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE 122 (311)
Q Consensus 60 -------------~~~~~~~~~~----~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~ 122 (311)
....+.+ .. ..+.||||||+.++.. ....+..+++.+|++|||+|++++++..+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~-p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e 218 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEY-PLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE 218 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEE-CCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred HHhhccccccccceEEEEEc-cchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence 0000111 00 4699999999775311 22333445677899999999987788777
Q ss_pred HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 123 GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 123 ~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++... .. ....|+++|+||+|+...
T Consensus 219 ~~~l~~~---l~-~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 219 RRYLENY---IK-GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHH---TT-TSCCCEEEEEECGGGGGG
T ss_pred HHHHHHH---HH-hhCCCEEEEEECcccccc
Confidence 6554321 21 123589999999998644
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=147.65 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=104.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++.... ... .+++.......+.+ ++. .+.||||||..+.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~---------- 75 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY---------- 75 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCC-TTC--CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCC-CCC--CCccceEEEEEEEE-CCEEEEEEEEcCCChhhh----------
Confidence 3456799999999999999999999987642 211 12222222333444 443 7899999997652
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
......++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... .+..
T Consensus 76 -~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~ 144 (206)
T 2bov_A 76 -AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKN 144 (206)
T ss_dssp -HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHH---------HHHH
T ss_pred -HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHH---------HHHH
Confidence 1112233456799999999984433222 3445555554431 23599999999998754111121 1344
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....+..++. +|+.++.|+++++++|.+.+.
T Consensus 145 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 145 RAEQWNVNYVE------TSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44555666665 788888999999999987663
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=148.33 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=104.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ ++ ..+.||||||.... ..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD--NTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERF-----------RS 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHH-----------HH
Confidence 3589999999999999999999976642 222334444444455555 44 37999999995532 11
Q ss_pred HHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++.+.. ...++..+....+. ..|+++|+||+|+.........+ ...+..
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVSTEE---------GERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence 2223355789999999998543322 23455555554432 35999999999986541111111 233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.|++++++.|.+.+
T Consensus 148 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 148 ELNVMFIE------TSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHTCEEEE------EBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 44666665 68888899999999988754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-20 Score=147.24 Aligned_cols=160 Identities=19% Similarity=0.158 Sum_probs=102.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++.... . ...+++.......+.+ ++. .+.||||||..+....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 68 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV-D--EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM---------- 68 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC-C--CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC-C--CCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH----------
Confidence 4689999999999999999999987642 1 1122233333333444 554 4778999997653221
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ....+. ...+..
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~~ 136 (189)
T 4dsu_A 69 -RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLAR 136 (189)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSC--SSCHHH--------HHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCccc--ccCHHH--------HHHHHH
Confidence 1222445799999999985433222 3444555554322 34699999999998744 221111 334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+.+++. +||.++.|+++++++|.+.+.
T Consensus 137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55666666 788889999999999987764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=143.92 Aligned_cols=161 Identities=18% Similarity=0.129 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+++|.+|+|||||+|+|++.... ... .+++.......+.+ ++ ..+.||||||..+. ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCC--CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC-CCC--CCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence 3589999999999999999999987642 211 11222222223334 44 37899999996542 12
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+......... ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRAD 137 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH---------HHHHHHH
Confidence 22333556799999999984433222 3445555554432 23599999999998654111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+.+++. +|+.++.|+++++++|.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 QWNVNYVE------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEE------eCCCCCCCHHHHHHHHHHHHH
Confidence 55666665 788888999999999987663
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=146.50 Aligned_cols=159 Identities=18% Similarity=0.082 Sum_probs=103.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+ ++ ..+.||||||......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDA----------- 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHH-----------
Confidence 46899999999999999999999876421 22222333343444444 43 3789999999654321
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+......... ....+..
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKNE---------EAEGLAK 137 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCHH---------HHHHHHH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccccCHH---------HHHHHHH
Confidence 12233567899999999985432222 345555555442 3599999999998753111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+.+++. +|+.++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 RLKLRFYR------TSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HHTCEEEE------CBTTTTBSSHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHH
Confidence 55666665 78888899999999998765
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=146.70 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|++++.... . . .+|.......+.+ .+..+.+|||||... +...+..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~-~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-C-C---CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-c-c---cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 48999999999999999999876542 1 1 1233333445555 778999999999653 2333444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++.++|++++|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... .. ...+...+
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~---~~~~~~~~ 135 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-LG---LHSLRHRN 135 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT---GGGCSSCC
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-hC---cccccCcc
Confidence 5788999999999985432222 12233333221 123599999999998654 222222111 00 00000111
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+++ .+||.++.|+++++++|.+.+.
T Consensus 136 ~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 136 WYIQ------ATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEE------ECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEE------EcccCCCcCHHHHHHHHHHHHh
Confidence 1233 3788889999999999987653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=148.25 Aligned_cols=169 Identities=17% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... .... +++.......+.+ ++. .+.||||||..+ +.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 96 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYT--PTVFERYMVNLQV-KGKPVHLHIWDTAGQDD-----------YD 96 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC--------C--CCCCEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCC--CccceeEEEEEEE-CCEEEEEEEEECCCchh-----------hh
Confidence 35699999999999999999999987642 2111 1122222223334 443 789999999554 22
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCCc
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPK 168 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~~ 168 (311)
.....++..+|++|+|+|++++.+.... .++..+..... ..|+++|+||+|+... ....+.+.. ....
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhcc--chhhhhhcccccCcccHH
Confidence 3334457789999999999854333332 35555655442 3599999999998765 333222210 0111
Q ss_pred hHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 169 PLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 169 ~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
....+....+. .++. +||.++.|++++++.|.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 172 RGQEMARSVGAVAYLE------CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHHHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEE------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 23455555565 5555 78889999999999998877553
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=147.09 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=107.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|++++... .... .+++.......+.+ ++ ..+.||||||..+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~--------- 80 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAF-PEEY--VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD--------- 80 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSC-CCSC--CCSSCCCEEEEEES-SSCEEEEEEECCCCSSSST---------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC--CCcccceeEEEEEE-CCEEEEEEEEECCCCcchh---------
Confidence 344668999999999999999999998753 2211 11111111223344 44 478999999976532
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cC
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----EC 166 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~ 166 (311)
.....++..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|+... ....+.+.. ..
T Consensus 81 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 153 (194)
T 2atx_A 81 --RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD--PKTLARLNDMKEKPIC 153 (194)
T ss_dssp --TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC--HHHHHHHTTTTCCCCC
T ss_pred --HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc--ccchhhcccccCcccC
Confidence 223455788999999999985533222 245666666543 3599999999998764 222111110 00
Q ss_pred CchHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
......+....+. .++. +||.++.|+++++++|.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 154 VEQGQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 1123444444454 5555 78889999999999988755
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-20 Score=149.44 Aligned_cols=163 Identities=19% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++...........+.+. ...+.. ++ ..+.||||||..+. .
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 70 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISC-DKSVCTLQITDTTGSHQF-----------P 70 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEE-TTEEEEEEEEECCGGGSC-----------H
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEE-CCEEEEEEEEeCCChHHh-----------H
Confidence 3569999999999999999999998664211111111111 112222 33 37899999996542 1
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+... ....+. ...+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA 140 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence 122223456799999999984433222 3455566665543234599999999998753 111111 23334
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+++++++|.+.+..
T Consensus 141 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 141 QEWKCAFME------TSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHTCEEEE------CBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHhCCeEEE------EecCCCCCHHHHHHHHHHHHhh
Confidence 445656655 7888899999999999887654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=144.18 Aligned_cols=161 Identities=15% Similarity=0.239 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|++|+|||||+|+|+|..... ...++.|.......+.+ ++..+.+|||||..+..... ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI--GNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC--C-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec--cCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 4799999999999999999999876422 22344555555555566 67899999999987653221 1122222211
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
. ..++|++++|+|+++ .. ....++..+.+ . ..|+++|+||+|+... ..+. .....+...++.
T Consensus 78 ~-~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~-~----~~p~ilv~nK~Dl~~~--~~~~--------~~~~~~~~~~~~ 139 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-LE-RNLYLTLQLME-M----GANLLLALNKMDLAKS--LGIE--------IDVDKLEKILGV 139 (165)
T ss_dssp H-HHCCSEEEEEEETTC-HH-HHHHHHHHHHH-T----TCCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-hh-HhHHHHHHHHh-c----CCCEEEEEEchHhccc--cChh--------hHHHHHHHHhCC
Confidence 1 136899999999983 22 22234444443 1 3599999999997532 1111 013344444566
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+++. +||.++.|++++++.|.+.+
T Consensus 140 ~~~~------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVVP------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEEE------CBGGGTBSHHHHHHHHHHHT
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHh
Confidence 6665 78999999999999987654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=144.85 Aligned_cols=165 Identities=19% Similarity=0.159 Sum_probs=103.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
|....++|+|+|.+|+|||||+|+|++.... . . ..+++.......+.+ ++ ..+.||||||........
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~-~-~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV-S-D-YDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC-S-S-CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc-c-c-cCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHH------
Confidence 3456799999999999999999999987542 1 1 122222222233444 44 378899999976543211
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ..+... ....
T Consensus 75 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~--~~v~~~-------~~~~ 139 (181)
T 2fn4_A 75 -----EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ--RQVPRS-------EASA 139 (181)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG--CCSCHH-------HHHH
T ss_pred -----HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHH-------HHHH
Confidence 112345699999999984433222 2334344332221 23599999999998754 221110 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +|+.++.|+++++++|.+.+..
T Consensus 140 ~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 140 FGASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 44445666665 7888899999999999887754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=145.27 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=99.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+. ....+.||||||... +.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence 456999999999999999999999876422 122222333333444441 134789999999543 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+.........+ ....
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~--------~~~~ 144 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK--------SAQE 144 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH--------HHHH
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH--------HHHH
Confidence 445567889999999999985433222 3445555554431 1235999999999985431011111 1233
Q ss_pred HHH-hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQ-LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~-~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. ..+..++. +|+.++.|+++++++|.+.+.
T Consensus 145 ~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 145 LAKSLGDIPLFL------TSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHTTSCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 333 23445555 788889999999999987653
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=151.60 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||++++++... ..... +..........+.. ++. .+.||||+|.... ..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~-~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~-----------~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQ-ATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERF-----------RS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-C-----------CEEEEEEC-SSCEEEEEEECCSCTTTC-----------GG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC-CCCcC-CccceEEEEEEEEe-cceEEEEEEEECCCchhh-----------hh
Confidence 458999999999999999999987654 22211 11122222223333 333 7889999996542 22
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++|++++|+|++++-+-.. ..++..+....+++ .|++||.||+|+... ..+.. .....+..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~--r~V~~-------~e~~~~a~ 146 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK--RQVSI-------EEGERKAK 146 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG--CCSCH-------HHHHHHHH
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc--CcccH-------HHHhhHHH
Confidence 33445788999999999985444333 45666777666654 499999999997654 22111 11344556
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||+++.|+++++..|.+.+.
T Consensus 147 ~~~~~~~e------~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 147 ELNVMFIE------TSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHTCEEEE------EBTTTTBSHHHHHHHHHHHC-
T ss_pred HhCCeeEE------EeCCCCcCHHHHHHHHHHHHH
Confidence 66766655 799999999999999876653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-20 Score=156.04 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=107.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|++|||||||+|+|+|...+ ...++|+|.......+.. +..+.+|||||..+..... ..+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--PEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--hHHHHHHHHH
Confidence 479999999999999999999998753 234567777665554432 6789999999998754322 1222322221
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
. ...+|++++|+|+++ +.. ...+...+.+ ...|+++|+||+|+... ..+. .....+....+.
T Consensus 77 ~-~~~~d~vi~V~D~t~-~e~-~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 L-SQRADSILNVVDATN-LER-NLYLTTQLIE-----TGIPVTIALNMIDVLDG--QGKK--------INVDKLSYHLGV 138 (272)
T ss_dssp H-TTCCSEEEEEEEGGG-HHH-HHHHHHHHHH-----TCSCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-hHh-HHHHHHHHHh-----cCCCEEEEEEChhhCCc--CCcH--------HHHHHHHHHcCC
Confidence 1 246899999999983 322 2233333433 23599999999997633 1111 123445555566
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+++. +||.++.|++++++.|.+.+.
T Consensus 139 ~vi~------~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVVA------TSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEEE------CBTTTTBSHHHHHHHHHHSCT
T ss_pred CEEE------EEccCCCCHHHHHHHHHHHHh
Confidence 6666 788999999999999987654
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-19 Score=143.10 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=102.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.-..++|+|+|.+|+|||||+|+|++..... . ..+++.......+.+ ++. .+.||||||..+ +
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 82 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVD--E-YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------Y 82 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--C-CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCcc--c-cCCccceEEEEEEEE-CCEEEEEEEEECCChHH-----------H
Confidence 3456899999999999999999999876421 1 122222222233444 443 589999999553 2
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
......++..+|++++|+|++++.+..+ ..++..+...... ...|+++|+||+|+... ....+ .+..+
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~--------~~~~~ 151 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTR--TVDTK--------QAHEL 151 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHH--------HHHHH
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCcc--cCCHH--------HHHHH
Confidence 2334455788999999999985433232 3445555554431 23599999999998753 11111 13344
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
....+..++. +|+.++.|+.+++++|.+.+...
T Consensus 152 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 152 AKSYGIPFIE------TSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 4555666665 78888899999999998877553
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.82 E-value=9.5e-20 Score=149.56 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=80.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC--ccccccCCCCCcceeEEEEEEEeeC----CceEEEEeCCCCCCCCCChHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK--KAFMSKAGSSGVTKTCEMQRTMLKA----GQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~--~~~~~~~~~~~~T~~~~~~~~~~~~----~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
...++|+|+|.+|+|||||+|+|++. .. .....+..........+.+ + ...+.||||||..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~---------- 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKF--LKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSD---------- 84 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEEC-TTSSEEEEEEEEETTTTH----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcc--cCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcH----------
Confidence 45689999999999999999999987 32 1111111112233444555 4 3479999999953
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCC-CChhcHHHHhhhcCCc
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELE-DNDETLEDYLGRECPK 168 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~-~~~~~~~~~~~~~~~~ 168 (311)
.+...+..++..+|++|+|+|++++.+... ..++..+....+. ....|+++|+||+|+.. . ..+. ..
T Consensus 85 -~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~~v~-------~~ 154 (208)
T 2yc2_C 85 -LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQR--HQVR-------LD 154 (208)
T ss_dssp -HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CCC-------HH
T ss_pred -HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhh--ccCC-------HH
Confidence 345556677889999999999985543222 4555666655431 02359999999999875 3 1111 01
Q ss_pred hHHHHHHhcCCcEEEecCCchhhhhh-HHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCDNRCVLFDNKTKDAAKR-TEQVGKLLSLVNSVIV 210 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~~~~~~sa~~-~~~i~~l~~~i~~~~~ 210 (311)
....+....+..++. +|+.+ +.|+.+++++|.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~------~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 155 MAQDWATTNTLDFFD------VSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp HHHHHHHHTTCEEEE------CCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEE------eccCCCCcCHHHHHHHHHHHHH
Confidence 134455556666665 78888 8999999999987653
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=142.94 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=98.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++.... ... .+. +.......+.+ + ...+.+|||||...... +
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~-~~t-~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~--------~--- 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-EKY-DPT-IEDSYRKQVEV-DCQQCMLEILDTAGTEQFTA--------M--- 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CSC-CCC-SEEEEEEEEES-SSCEEEEEEEEECSSCSSTT--------H---
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCC-CCC-ccceEEEEEEE-CCEEEEEEEEECCChHHHHH--------H---
Confidence 489999999999999999999986542 111 111 11111222333 3 33789999999765321 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........+ ....+...
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE---------QGQNLARQ 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHH---------HHHHHHHH
Confidence 1122445799999999985433222 3445555554322 23599999999998654111111 12334444
Q ss_pred c-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 C-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
. +..++. +||.++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFLE------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEEE------ecCCCCCCHHHHHHHHHHHH
Confidence 4 445555 78889999999999998765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-20 Score=147.61 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++...... .. |.......+.+ ++..+.||||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SP----TIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-EC----CSCSSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-cC----CCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 4569999999999999999999997764311 11 22222344555 77899999999975421 22
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH-HHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE-ILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~-~~~ 175 (311)
+..++..+|++|+|+|++++-+-.. ..++..+..... ....|+++|+||+|+... ...++.... +.. .+.
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~~~~~~ 148 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LKLTSIK 148 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCC
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH-----hChhhhc
Confidence 2334678999999999985533222 223333322110 123699999999998754 222221111 000 001
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|+++++++|.+.+..
T Consensus 149 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 149 DHQWHIQA------CCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp SSCEEEEE------CBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCcEEEE------ccCCCCcCHHHHHHHHHHHHHH
Confidence 11223333 7888999999999999987743
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=148.90 Aligned_cols=163 Identities=14% Similarity=0.126 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-----------CceEEEEeCCCCCCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-----------GQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-----------~~~l~liDTPG~~~~~~~ 86 (311)
+..++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+.. ...+.||||||.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------ 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPK--FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------ 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCE--EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcC--CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc------
Confidence 4568999999999999999999998764111 111112222222333312 357999999993
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
..+...+..++..+|++|||+|++++.+... ...++..+.... ...|+++|+||+|+... ..+..
T Consensus 95 -----~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~---- 161 (217)
T 2f7s_A 95 -----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE---- 161 (217)
T ss_dssp -----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH----
T ss_pred -----HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccc--cccCH----
Confidence 3344455566788999999999984433222 223333332211 24699999999998653 11110
Q ss_pred cCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 165 ECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.....+....+..++. +||.++.|+++++++|.+.+.
T Consensus 162 ---~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 162 ---RQARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp ---HHHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 1134455555666665 788888999999999887653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=141.30 Aligned_cols=163 Identities=18% Similarity=0.108 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++...... .....+.......+.+ ++ ..+.+|||||..+... .+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~--- 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA--HEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WL--- 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc--ccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hh---
Confidence 47999999999999999999997654211 2222334444444444 44 3778999999765311 01
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ....+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 138 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE---------EGRHLAGT 138 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH---------HHHHHHHH
Confidence 1112345799999999985432222 3444444443321 23599999999998643111111 13445555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +||.++.|++++++.+.+.+..
T Consensus 139 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 139 LSCKHIE------TSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCcEEE------ecCccCCCHHHHHHHHHHHHHh
Confidence 5666665 7888999999999999877643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=148.35 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=75.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++... .... .+.+ .....+.+.. +..+.||||||..+ +.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQ--TSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCC-CCBC--CCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cccc--CCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence 3458999999999999999999998763 2211 1222 2233355521 56899999999542 22
Q ss_pred H-HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHH----hCCCccCeEEEEEeccCCCCC
Q 021534 96 K-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESL----FGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 96 ~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~----~~~~~~~~~ilv~nk~D~~~~ 153 (311)
. .+..++.++|++|||+|+++ +..........+... .......|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2 33445778999999999983 332222333333322 112234599999999998765
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=145.86 Aligned_cols=173 Identities=18% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCh
Q 021534 10 DSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADP 87 (311)
Q Consensus 10 ~~~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~ 87 (311)
....+.+....++|+|+|.+|+|||||+|++++........ ++.+.......+.+ ++. .+.+|||||.....
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--- 86 (195)
T 3cbq_A 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG--- 86 (195)
T ss_dssp ---------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---
T ss_pred cccCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEEEE-CCEEEEEEEEecCCCccch---
Confidence 33445566778999999999999999999998754311111 22233333334444 444 67889999975421
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
..+. ..++..+|++|+|+|++++-+... ..++..+...... ...|+++|+||+|+........++
T Consensus 87 ----~~~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~------ 152 (195)
T 3cbq_A 87 ----GWLR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE------ 152 (195)
T ss_dssp ----HHHH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHH------
T ss_pred ----hhhH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHH------
Confidence 1121 223456799999999985433222 3444455543321 235999999999987541111111
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+....+..++. +||.++.|++++++.|.+.+..
T Consensus 153 ---~~~~a~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 153 ---GRHLAGTLSCKHIE------TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp ---HHHHHHHTTCEEEE------EBTTTTBSHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHhCCEEEE------EcCCCCCCHHHHHHHHHHHHHH
Confidence 23344445555555 7888899999999999887754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-19 Score=160.46 Aligned_cols=164 Identities=13% Similarity=0.157 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+|+|.||+|||||+|+|++..... ....+++|.......+.+ ++..+.||||||+.++.. .+.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~---~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAI-VSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGE---EIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchh---HHHHHHHHHHH
Confidence 4789999999999999999999986422 223457787777777777 889999999999876421 11111122334
Q ss_pred hccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|++|||+|++++.+.... ....++.. +. ..|+++|+||+|+... ..... .. +. ....
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~--~~~~~--~~-----l~---~~~~ 371 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAAN--ADALI--RA-----IA---DGTG 371 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTT--THHHH--HH-----HH---HHHT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCc--cchhH--HH-----HH---hcCC
Confidence 567899999999999977665322 22223333 22 2599999999998765 32221 10 11 1111
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..++. +||.++.|+++|+++|.+.+.
T Consensus 372 ~~~i~------vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIG------ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEE------CBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEE------EEECCCCCHHHHHHHHHHHHh
Confidence 33444 789999999999999999886
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=144.34 Aligned_cols=166 Identities=23% Similarity=0.193 Sum_probs=103.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~ 91 (311)
+.+....++|+|+|.+|+|||||+|+|++.... ... .+..+... ...+.. ++. .+.+|||||.......
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~-~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----- 82 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFV-DDY-DPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAM----- 82 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC-SCC-CTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSS-----
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHH-----
Confidence 344556799999999999999999999976532 211 12222222 333334 554 4667999996543221
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
...++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ..
T Consensus 83 ------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~---------~~ 146 (183)
T 3kkq_A 83 ------REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD---------QG 146 (183)
T ss_dssp ------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH---------HH
T ss_pred ------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH---------HH
Confidence 1122445799999999985433222 3444445443322 23589999999998754111111 13
Q ss_pred HHHHHhcCCcEEEecCCchhhhh-hHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAK-RTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~-~~~~i~~l~~~i~~~~~ 210 (311)
..+...++..++. +|+. ++.|++++++.|.+.+.
T Consensus 147 ~~~~~~~~~~~~~------~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 147 KEMATKYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEE------eccCCCCCCHHHHHHHHHHHHh
Confidence 4455555666666 6777 78999999999988764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=150.91 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=104.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||.....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 76 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYR----------- 76 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTT-----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCccchh-----------
Confidence 4568999999999999999999998764222 2223333344444455 55 488999999976532
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+..+ ..++..+...... ..|+++|+||+|+... ..+.. .....+.
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~--~~v~~-------~~~~~~~ 145 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHL--RAVPT-------EESKTFA 145 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG--CCSCH-------HHHHHHH
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cccCH-------HHHHHHH
Confidence 223455788999999999985443333 3445555554322 3599999999998643 11110 0123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+++++++|.+.+..
T Consensus 146 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 146 QENQLLFTE------TSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHTTCEEEE------CCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 555655555 6888889999999999887744
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=146.90 Aligned_cols=167 Identities=17% Similarity=0.108 Sum_probs=106.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|++++...... ..+..+.... ..+.+ ++ ..+.||||||..+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~----------- 86 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDY----------- 86 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGG-----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhH-----------
Confidence 34568999999999999999999998764211 1122222221 22333 44 37899999996542
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~ 167 (311)
......++..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+... ....+.+... ..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 161 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD--EHTRRELAKMKQEPVRS 161 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC--ccchhhhcccccCcCCH
Confidence 2233446788999999999984433222 345666665432 3599999999998765 2222222110 01
Q ss_pred chHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 168 ~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.....+....+. .++. +||.++.|++++++.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 162 EEGRDMANRISAFGYLE------CSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 123444555555 4554 78888999999999988754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=146.73 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++ ..+.||||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 35699999999999999999999987642 222233344444444444 33 478999999965422
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ....+. ...
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence 223345678999999999985433222 3444555544421 123599999999998743 211111 222
Q ss_pred HHH-hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQ-LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~-~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. ..+..++. +||.++.|+++++++|.+.+.
T Consensus 142 ~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 142 WCYSKNNIPYFE------TSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp HHHHTTSCCEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 333 33445555 788899999999999987664
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=148.17 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=103.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
..++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+. ....+.||||||...... .
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE--LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-----------L 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-----------S
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-----------h
Confidence 458999999999999999999998764222 12222233333333331 234789999999654321 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+... ....+ ....+...
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~--------~~~~~~~~ 149 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR--EVDRN--------EGLKFARK 149 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC--CSCHH--------HHHHHHHH
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc--ccCHH--------HHHHHHHH
Confidence 2234677899999999985433222 233334433221 123699999999998533 11111 12344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +|+.++.|+++++++|.+.+..
T Consensus 150 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 150 HSMLFIE------ASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCEEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence 5666555 7888899999999999987754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=144.48 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=103.3
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~ 89 (311)
....+....++|+|+|.+|+|||||+|++++.... ....+ |.......+.+ ++. .+.||||||....
T Consensus 12 ~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~------ 80 (184)
T 3ihw_A 12 ENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPEL------ 80 (184)
T ss_dssp ----CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCH------
T ss_pred CCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC---CcceEEEEEEE-CCEEEEEEEEECCCChhh------
Confidence 34456667899999999999999999999987642 21111 22222234445 554 6778999997641
Q ss_pred HHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCc
Q 021534 90 VSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPK 168 (311)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~ 168 (311)
. ++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.......+.. .
T Consensus 81 --~--------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~-------~ 142 (184)
T 3ihw_A 81 --Q--------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDD-------S 142 (184)
T ss_dssp --H--------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCH-------H
T ss_pred --h--------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCH-------H
Confidence 1 2345799999999985544333 344444443321 1335999999999985321111110 1
Q ss_pred hHHHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 169 ~~~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+....+ ..++. +||.++.|++++++++.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~e------~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 143 RARKLSTDLKRCTYYE------TCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHTTTCEEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 1344555554 45554 7888999999999999876643
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=147.00 Aligned_cols=172 Identities=15% Similarity=0.045 Sum_probs=106.8
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
.+....++|+|+|.+|+|||||+|+|++.... . ...+...... ...+.+. ....+.||||||...
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~-~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~----------- 87 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYP-E-TYVPTVFENY-TACLETEEQRVELSLWDTSGSPY----------- 87 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC-S-SCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGG-----------
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCC-C-CcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHh-----------
Confidence 44556799999999999999999999987642 1 1111111111 2222331 234789999999653
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh-h----hcC
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL-G----REC 166 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~-~----~~~ 166 (311)
+......++..+|++|+|+|++++-+... ..++..+..... ..|+++|+||+|+..+ ......+ . ...
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 162 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRTD--LSTLMELSHQKQAPIS 162 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGGC--HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc--hhhhhhhcccccCccC
Confidence 22334556889999999999985544333 356666666542 3599999999998753 1100000 0 001
Q ss_pred CchHHHHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSVIVQ 211 (311)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~~~~ 211 (311)
......+....+. .++. +||.++.| ++++++.|.+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~e------~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 163 YEQGCAIAKQLGAEIYLE------GSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEE------eccCCCcccHHHHHHHHHHHHhc
Confidence 1123455555666 5655 78889998 99999999887643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=145.13 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=104.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEE---Eee-CCceEEEEeCCCCCCCCCCh
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRT---MLK-AGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~---~~~-~~~~l~liDTPG~~~~~~~~ 87 (311)
...++|+|+|.+|+|||||+|.+.|......... ....|........ ... ....+.||||||....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---- 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---- 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence 4569999999999999999999987643111110 0122333333321 110 2237899999997653
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHH----HHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIH----ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~----~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
...+..++..+|++|+|+|++++....+...+. ++..........|+++|+||+|+... ...++
T Consensus 88 -------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~--- 155 (198)
T 3t1o_A 88 -------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM--- 155 (198)
T ss_dssp -------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH---
T ss_pred -------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH---
Confidence 122334578899999999998444333333333 33332112234699999999998654 22221
Q ss_pred hcCCchHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 164 RECPKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..++...+. .++. +||.++.|+++++++|.+.+..
T Consensus 156 ------~~~~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 156 ------VRAVVDPEGKFPVLE------AVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp ------HHHHHCTTCCSCEEE------CBGGGTBTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHhcCCceEEE------EecCCCcCHHHHHHHHHHHHHH
Confidence 3444455555 5555 7889999999999999876643
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=156.32 Aligned_cols=173 Identities=16% Similarity=0.227 Sum_probs=116.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCChHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF-DSSADPEFVSKEIVKCI 98 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~-~~~~~~~~~~~~~~~~~ 98 (311)
..+|+++|++|+|||||+|+|+|...... ...+++|.......+.+ ++..+.+|||||+. .. ...+...+...+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~-s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISIT-SRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEEC-CCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccc-CCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 46899999999999999999999875322 22344555444444555 77899999999976 21 112222333344
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++++|+|+++ ++..+..+++.+.. ...|+++++||+|..... ..+.+. +..+....+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~~ 147 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQMN 147 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTSC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHHH--------HHHHHHhcC
Confidence 567788999999999986 88887766665542 235999999999987520 222222 223333334
Q ss_pred C-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcH
Q 021534 179 N-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTD 219 (311)
Q Consensus 179 ~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~ 219 (311)
. .+++ +|+.++.++.+|++.|...+++ +...|+.
T Consensus 148 ~~~~i~------iSA~~g~~v~~l~~~i~~~l~~-~~~~~~~ 182 (301)
T 1ega_A 148 FLDIVP------ISAETGLNVDTIAAIVRKHLPE-ATHHFPE 182 (301)
T ss_dssp CSEEEE------CCTTTTTTHHHHHHHHHTTCCB-CCCSSCT
T ss_pred cCceEE------EECCCCCCHHHHHHHHHHhCCc-CCCCCCc
Confidence 3 3444 7888899999999999887754 4444544
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=144.88 Aligned_cols=167 Identities=14% Similarity=0.027 Sum_probs=106.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++.... ... .+++.......+.+ .+. .+.||||||.... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEY--IPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSC--CCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGG-----------TT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-CCc--CCcccceeEEEEEE-CCEEEEEEEEECCCCHhH-----------HH
Confidence 3589999999999999999999976542 111 11111222223333 444 5679999997542 22
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~~~ 169 (311)
....++..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ....+.+.. .....
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence 334567889999999999855433332 45666666543 3699999999998755 222221111 01112
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+....+. .++. +||.++.|++++++.|.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 144 GLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCcEEEE------ecCCCccCHHHHHHHHHHHHhc
Confidence 3344555554 5555 7888999999999999887743
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-20 Score=154.19 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++...........+.+ .....+....+ ..+.||||||.......
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 77 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV--NHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------- 77 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE--EEEEEEEBTTSCEEEEEEEEECSGGGTSCC---------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--eEEEEEEeCCCcEEEEEEEecCCchhhchH---------
Confidence 456999999999999999999999876422211122222 22222222122 46999999997653221
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...++..+|++|+|+|++++.+..+ ..++..+....+.+ .|+++|+||+|+... ..+... ....+.
T Consensus 78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~ 144 (218)
T 4djt_A 78 --KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR--QKISKK-------LVMEVL 144 (218)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------CCHH-------HHHHHT
T ss_pred --HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHH
Confidence 1223567899999999985544333 45556666655432 599999999998654 111110 122333
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+..++. +||.++.|++++++.|.+.+...
T Consensus 145 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 145 KGKNYEYFE------ISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp TTCCCEEEE------EBTTTTBTTTHHHHHHHHHHHCC
T ss_pred HHcCCcEEE------EecCCCCCHHHHHHHHHHHHhcc
Confidence 444555555 78889999999999999888653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-20 Score=150.25 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=102.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|++++.... ... .|.......+.+ .+..+.+|||||..+... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~----~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~-----------~ 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTV----PTVGVNLETLQY-KNISFEVWDLGGQTGVRP-----------Y 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EEC----SSTTCCEEEEEE-TTEEEEEEEECCSSSSCC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcC----CCCceEEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 45699999999999999999999877642 211 122233444555 778999999999765432 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++|+|+|++++-+-.. ....+...... ....|+++|+||+|+... ....+.... .. ...+.
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~---~~~~~ 154 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-LG---VSSIM 154 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-TT---GGGCC
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-hC---hhhcc
Confidence 3345778999999999985533222 11223332221 123599999999998755 222222111 00 00001
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|+++++++|.+.+.+
T Consensus 155 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 155 NRTWTIVK------SSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp SSCEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCceEEEE------ccCCCccCHHHHHHHHHHHHHh
Confidence 11222333 7888899999999999987765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-20 Score=171.05 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=106.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|.+|||||||+|+|+|.... .....+++|.......+.+ .+..+.||||||+.+. .+.+.+.+...+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence 4589999999999999999999997643 2334568888888888877 7889999999998742 233456666667
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++|||+|+..+++..+.++...+++ ..+|+++|+||+|..... ....++.. ..++
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~-~~~~e~~~-----------lg~~ 159 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDFYS-----------LGFG 159 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----------CCSGG-----------GSSS
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhhh-hhHHHHHH-----------cCCC
Confidence 777788999999999988899888887777764 236999999999976431 11111111 0112
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+++ +||.++.|+.+|++.+...++
T Consensus 160 -~~~~------iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 -EPYP------ISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp -SEEE------CCTTTCTTHHHHHHHHHTTGG
T ss_pred -ceEE------eecccccchHHHHHHHHhhcc
Confidence 2233 688888999999999887664
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=147.50 Aligned_cols=166 Identities=15% Similarity=0.033 Sum_probs=104.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|++++.... .. ..+++.......+.+ ++. .+.||||||... +
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~ 91 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFP--GE-YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLED-----------Y 91 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCC--C--CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGG-----------G
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCC--CC-cCCeecceeEEEEEE-CCEEEEEEEEECCCchh-----------h
Confidence 346799999999999999999999976542 11 122233333333444 444 455999999754 2
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~ 167 (311)
......++..+|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+... ....+..... ..
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhccc--hhhhhhhhccccccccH
Confidence 23344567899999999999855444332 45666665542 3699999999998765 3322221110 11
Q ss_pred chHHHHHHhcCCc-EEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 168 ~~~~~~~~~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.....+....+.. ++. +||.++.|++++++.|.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 167 PQGLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcEEEE------eeCCCCCCHHHHHHHHHHH
Confidence 1233445555543 554 7888999999999998763
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=139.47 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++...... . .+++.......+.. .+. .+.+|||||..+.. . +
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-------~-~--- 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-C--DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-------A-M--- 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC-------H-H---
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc-c--CCccceEEEEEEEE-CCEEEEEEEEECCCchhhh-------H-H---
Confidence 37999999999999999999998764211 1 11222222223333 443 57899999976532 1 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ....+ ....+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~--------~~~~~~~~ 136 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESR--------QAQDLARS 136 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHH--------HHHHHHHH
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHH--------HHHHHHHH
Confidence 1122445799999999984433222 4455555554432 23599999999998753 21111 13344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +|+.++.|+.+++++|.+.+.
T Consensus 137 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 137 YGIPYIE------TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HTCCEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 5666665 688888999999999987664
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-20 Score=168.12 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|+|+|.... .....+++|.+..+..+.+ .+..+.||||||+.... ..+...+...+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 68999999999999999999987642 2234568888888888888 78899999999986421 1245566666666
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|++|||+|+.++++..+..+...++. ..+|+++|+||+|+.... ....+ +. ..+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~~~---------~~----~lg~~ 139 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYD---------FY----SLGFG 139 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CCCS---------SG----GGSSC
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhHHH---------HH----HcCCC
Confidence 7788999999999988888887766665543 236999999999976431 11111 11 1121
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+++ +||.++.|+.+|++.+.+.+++
T Consensus 140 ~~~~------iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 EPYP------ISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CCEE------CBTTTTBTHHHHHHHHHHTGGG
T ss_pred CeEE------EeCcCCCChHHHHHHHHHhcCc
Confidence 3333 7899999999999999887764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=142.35 Aligned_cols=164 Identities=15% Similarity=0.232 Sum_probs=109.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|++|+|||||+|+|++...... ..++.|.......+.+ ++..+.+|||||..+..... ..+.+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSS--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCcccccc--HHHHHHHHH
Confidence 458999999999999999999999764322 2345666666666777 78899999999987753221 111222211
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.. ...+|++++|+|.+ .+. ....++..+.. ...|+++|+||+|+... ..+. .....+...++
T Consensus 81 ~~-~~~~~~~i~v~d~~-~~~-~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~~~~--------~~~~~~~~~~~ 142 (188)
T 2wjg_A 81 II-NEKPDLVVNIVDAT-ALE-RNLYLTLQLME-----MGANLLLALNKMDLAKS--LGIE--------IDVDKLEKILG 142 (188)
T ss_dssp HH-HHCCSEEEEEEEGG-GHH-HHHHHHHHHHT-----TTCCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHT
T ss_pred Hh-ccCCCEEEEEecch-hHH-HHHHHHHHHHh-----cCCCEEEEEEhhhcccc--ccch--------HHHHHHHHHhC
Confidence 11 13579999999987 322 22233333332 23589999999997533 1111 12445555556
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +|+.++.|+.++++.|...+..
T Consensus 143 ~~~~~------~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 VKVVP------LSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHHHHTT
T ss_pred CCeEE------EEecCCCCHHHHHHHHHHHHHh
Confidence 66666 7888999999999999988865
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=145.74 Aligned_cols=163 Identities=16% Similarity=0.123 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|++++.... ......+ .....+.+ ++..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG----FNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTT----CCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-ccCCcCc----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 45699999999999999999999977641 2111122 22344555 678999999999765321 2
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++++|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... .. .. .+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~ 150 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKE-LN--LV-ELK 150 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHH-TT--TT-TCC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHH-hC--cc-ccc
Confidence 3455788999999999985533222 22333333322 234699999999998754 222221111 00 00 000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|+++++++|.+.+.+
T Consensus 151 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 151 DRSWSIVA------SSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp SSCEEEEE------EBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCceEEEE------ccCCCCcCHHHHHHHHHHHHHh
Confidence 01112333 7889999999999999887643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-19 Score=153.09 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CCcceeEE---------------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SGVTKTCE--------------------------------- 60 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~~T~~~~--------------------------------- 60 (311)
...++|+|+|.+|+|||||+|+|+|...++.+... ++.+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999998864433211 10000000
Q ss_pred --------------------EEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEEC-CCC
Q 021534 61 --------------------MQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSI-RNR 117 (311)
Q Consensus 61 --------------------~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~-~~~ 117 (311)
...+....+..+.||||||+.+... ....+...+...+..++..+|++++|+|+ +..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0001221346899999999975221 11123344555566667788999999997 444
Q ss_pred CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhh--
Q 021534 118 FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKR-- 194 (311)
Q Consensus 118 ~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~-- 194 (311)
+...+ ..++..+.. ...|+++|+||+|+.... ....+.+.. .+..++..++++.+ .|+..
T Consensus 182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~ 244 (315)
T 1jwy_B 182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVIN---RSQEDII 244 (315)
T ss_dssp STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCC---CCHHHHS
T ss_pred hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEec---CChhhhc
Confidence 55444 244444432 235999999999988652 112222221 00111234444333 34444
Q ss_pred -HHHHHHHHHHHHHHHHH
Q 021534 195 -TEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 195 -~~~i~~l~~~i~~~~~~ 211 (311)
+.|+.++++.+..+++.
T Consensus 245 ~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 245 AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHhC
Confidence 67899999999998865
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-20 Score=148.18 Aligned_cols=162 Identities=10% Similarity=0.067 Sum_probs=97.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+|+|.+|+|||||+|++++.... . . .+|.......+.+ .+..+.||||||......
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~-~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~----------- 88 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-T-T---IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP----------- 88 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-E-E---EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-c-c---CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------
Confidence 356799999999999999999999877642 1 1 2233444455666 778999999999765321
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.+..++..+|++|+|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... .. ....
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~---~~~~ 160 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-LG---LQHL 160 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT---GGGC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-hC---cccc
Confidence 12233567899999999985433222 11233332221 123599999999998654 222222111 00 0000
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+..++ .+||.++.|+++++++|.+.+
T Consensus 161 ~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 161 RSRTWYVQ------ATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp SSCCEEEE------ECBTTTTBTHHHHHHHHHHHT
T ss_pred cCCceEEE------ECcCCCcCCHHHHHHHHHHHH
Confidence 01111233 378889999999999998765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=145.57 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=100.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|++++...... ..|.......+.+ ++..+.+|||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4569999999999999999999998753111 1222233445556 688999999999643 2233
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++++|+|++++-+... ...++...... ....|+++|+||+|+... ...++.... .. +. .+.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~--~~-~~~ 148 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEG-LN--LH-TIR 148 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCC
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHH-hC--ch-hcc
Confidence 4455778999999999985433222 11223332221 123599999999998755 222222111 00 00 000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++ .+||.++.|+++++++|.+.+
T Consensus 149 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 149 DRVWQIQ------SCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp SSCEEEE------ECCTTTCTTHHHHHHHHHHTC
T ss_pred CCceEEE------EccCCCCCCHHHHHHHHHHHH
Confidence 1112233 378889999999999997754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=146.43 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++...... ..+..+... ...+.+ ++ ..+.||||||..+.. .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENY-VADIEV-DGKQVELALWDTAGQEDYD-----------R 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTCT-----------T
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceE-EEEEEE-CCEEEEEEEEECCCcHHHH-----------H
Confidence 468999999999999999999998764211 111111111 122344 44 378999999976532 2
Q ss_pred HHHhccCCccEEEEEEECCCCCC--hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc----C-Cch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFS--KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----C-PKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~-~~~ 169 (311)
....++..+|++|+|+|++++-+ .....++..+..... ..|+++|+||+|+... ....+.+... . ...
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence 23345788999999999984432 222355666666442 3599999999998755 3322222110 0 112
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+....+. .++. +||.++.|+++++++|.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 164 GRAMAVRIQAYDYLE------CSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 2334444454 4444 788899999999999988764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-20 Score=153.98 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=106.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+....++|+|+|.+|+|||||+|+++............+.|.......+.. .+..+.||||||......
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~---------- 79 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGG---------- 79 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSC----------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhH----------
Confidence 345669999999999999999999554332112223334444444433322 345789999999654321
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
....++..+|++|+|+|++++.+... ..++..+...+. ..|+++|+||+|+... ....+ ...+.
T Consensus 80 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~---------~~~~~ 144 (221)
T 3gj0_A 80 -LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR--KVKAK---------SIVFH 144 (221)
T ss_dssp -CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC--SSCGG---------GCCHH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc--cccHH---------HHHHH
Confidence 12233568899999999985443332 345556665543 3599999999998754 22111 12233
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +|+.++.|+.+++.+|.+.+..
T Consensus 145 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 145 RKKNLQYYD------ISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp HHHTCEEEE------CBGGGTBTTTHHHHHHHHHHHT
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 444566665 7889999999999999987754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-18 Score=150.94 Aligned_cols=168 Identities=16% Similarity=0.140 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh-HHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP-EFVSKEIVK 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~-~~~~~~~~~ 96 (311)
...++|+++|.+|+|||||+|+|++... .....++.|.......+.. .+..+.+|||||+.+..... ..+.. .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~---~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP--EIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEK---Q 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC--EEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHH---H
Confidence 4568999999999999999999999874 2223345666666666666 67889999999987643221 11111 1
Q ss_pred HHHhccCCccEEEEEEECCCCC--ChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRF--SKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
.+......+|++++|+|+++.. +..+ ..++..+...++ ..|+++|+||+|+... ..+.+ +...
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~---------~~~~ 304 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKR---------LEKF 304 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHH---------HHHH
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHH---------HHHH
Confidence 2222344689999999987432 3333 566666666553 3599999999998754 33322 2233
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+.+++. +||.++.|+++|+++|.+.+..
T Consensus 305 ~~~~~~~~~~------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 305 VKEKGLNPIK------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHTTCCCEE------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence 3344555555 7888999999999999887643
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-19 Score=141.33 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++..... ..+ ... ......+.+ ++ ..+.||||||...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~------------- 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TES-EQYKKEMLV-DGQTHLVLIREEAGAPD------------- 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSS-SEEEEEEEE-TTEEEEEEEEECSSSCC-------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-Ccc-eeEEEEEEE-CCEEEEEEEEECCCCch-------------
Confidence 356999999999999999999999876422 111 111 111233344 44 3688999999653
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
..++.++|++|+|+|++++.+... ..++.++....... ...|+++|+||+|+.......+.. .....+
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~-------~~~~~~ 136 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARAL 136 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH-------HHHHHH
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH-------HHHHHH
Confidence 112445799999999985544333 23344555543321 235999999999974221011110 012333
Q ss_pred HHhc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.... +..++. +||.++.|++++++.|.+.+.
T Consensus 137 ~~~~~~~~~~~------~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 137 XADMKRCSYYE------TXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHSSEEEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred HHhhcCCeEEE------EeccccCCHHHHHHHHHHHHH
Confidence 3333 344444 788889999999999887653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=143.86 Aligned_cols=165 Identities=8% Similarity=0.034 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.++|+++|.+|+|||||+|++++.... .. ..|.......+.+ ++..+.+|||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL---QPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC--CC---CCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--cc---ccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 45589999999999999999999987642 11 2233333455666 77899999999976422 22
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCC-hhcHHHHhhhcCCchHHHHH-
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEIL- 174 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~~- 174 (311)
+..++..+|++++|+|++++-+-.. ..++..+.... .....|+++|+||+|+.... ...+.+....... .-...+
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 161 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVSEAELRSALGLLNT-TGSQRIE 161 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSC-CC---CC
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccc-ccccccc
Confidence 3455788999999999985433222 22233232211 11235999999999987530 1112222111000 000000
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
...+.+++ .+||.++.|+++++++|.+
T Consensus 162 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 162 GQRPVEVF------MCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp SSCCEEEE------ECBTTTTBSHHHHHHHHHT
T ss_pred ccceEEEE------EeECCcCCCHHHHHHHHHh
Confidence 00112233 3788999999999998864
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=139.70 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=102.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... .... +...... ...+.+ ++ ..+.||||||.... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~-~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYV-PTVFENY-TASFEI-DTQRIELSLWDTSGSPYY-----------D 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCC-CCSEEEE-EEEEEC-SSCEEEEEEEEECCSGGG-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC-CCCC-CccceeE-EEEEEE-CCEEEEEEEEECCCChhh-----------h
Confidence 45699999999999999999999986542 1111 1111111 122333 33 47899999996542 2
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCch
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP 169 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~ 169 (311)
.....++..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|+..+. ....+.... .....
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence 223446788999999999985433333 244555655443 35999999999987431 111111100 00112
Q ss_pred HHHHHHhcC-CcEEEecCCchhhhh-hHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCD-NRCVLFDNKTKDAAK-RTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~-~~~~~f~~~~~~sa~-~~~~i~~l~~~i~~~~ 209 (311)
...+....+ ..++. +||. ++.|++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~e------~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 146 GANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------eeecCCCcCHHHHHHHHHHHH
Confidence 344555545 35555 7887 6899999999988765
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-21 Score=155.82 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=97.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ..++.+.......+.+ ++ ..+.||||||......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT---------- 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCH--HHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH----------
Confidence 4568999999999999999999998764221 1223344454555555 55 4799999999665322
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.+..++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+... ..+. ......+.
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~ 165 (199)
T 3l0i_B 98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK--KVVD-------YTTAKEFA 165 (199)
T ss_dssp -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC----CCCC-------SCC-CHHH
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc--ccCC-------HHHHHHHH
Confidence 13345678999999999985443222 334444443322 23599999999998644 2111 01123344
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+..++. +||.++.|+++++++|.+.+
T Consensus 166 ~~~~~~~~~------vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 166 DSLGIPFLE------TSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp HTTTCCBCC------CCC---HHHHHHHHHHTTTT
T ss_pred HHcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence 444554443 78899999999999987655
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=141.82 Aligned_cols=164 Identities=19% Similarity=0.156 Sum_probs=101.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++...... .. +..+... ...+.+ ++ ..+.||||||..+ ...
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~-~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~--- 91 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YD-PTLESTY-RHQATI-DDEVVSMEILDTAGQED-----TIQ--- 91 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CC-TTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-----CHH---
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcc-cC-CCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-----ccc---
Confidence 345679999999999999999999998764211 11 1111111 222333 43 4689999999775 111
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
. ..++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ....
T Consensus 92 ~----~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~---------~~~~ 157 (196)
T 2atv_A 92 R----EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTE---------EGEK 157 (196)
T ss_dssp H----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHH---------HHHH
T ss_pred h----hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHH---------HHHH
Confidence 1 122445699999999985433222 3445555554322 23599999999998653111111 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHH-HHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTE-QVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +|+.++. |+.+++++|.+.+.+
T Consensus 158 ~~~~~~~~~~~------~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 158 LATELACAFYE------CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HHHHHTSEEEE------CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEE------ECCCcCCcCHHHHHHHHHHHHHh
Confidence 44444656665 7888888 999999999876643
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=163.38 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|+||+|||||+|+|++..... ....+++|..+....+.+ ++..+.||||||+.++... +.........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~---ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAI-VTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQ---VEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSC-CSCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhH---HHHHHHHHHh
Confidence 4789999999999999999999876421 223456777766666777 8899999999998764211 1111122234
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++|+|+|++++++..+..++..+.. .|+++|+||+|+... .... .... +. .+.
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence 56788999999999998887777665555432 499999999998755 2221 1110 00 123
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+++. +|+.++.|+++|++.|.+.+..
T Consensus 359 ~~i~------iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 359 QIVH------TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp CEEE------EBTTTTBSHHHHHHHHHHHHTT
T ss_pred cEEE------EECCCCCCHHHHHHHHHHHHhc
Confidence 3444 7889999999999999998854
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=140.68 Aligned_cols=164 Identities=18% Similarity=0.100 Sum_probs=98.9
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCChHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG--QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~ 90 (311)
+......++|+|+|.+|+|||||+|++++... ..... + |.... ...+.+ ++ ..+.||||||......
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~--~-t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~----- 84 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRF-ISEYD--P-NLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN----- 84 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCC--T-TCCEEEEEEEEE-TTEEEEEEEEECCC---CCC-----
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCC-CcccC--C-CccceeeEEEEE-CCEEEEEEEEECCCCCcchh-----
Confidence 34455779999999999999999999998763 22111 1 22211 122333 33 3788999999765321
Q ss_pred HHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCc
Q 021534 91 SKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPK 168 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~ 168 (311)
+ ..++..+|++++|+|++++-+... ..++..+...... ....|+++|+||+|+... ..+. ..
T Consensus 85 ---~----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~-------~~ 148 (187)
T 3c5c_A 85 ---C----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY--RQVT-------KA 148 (187)
T ss_dssp ---T----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG--CSSC-------HH
T ss_pred ---H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc--CccC-------HH
Confidence 1 123567899999999984433332 3455555554310 123589999999998643 1111 01
Q ss_pred hHHHHHHhcCCcEEEecCCchhhh-hhHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCDNRCVLFDNKTKDAA-KRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~~~~~~sa-~~~~~i~~l~~~i~~~~ 209 (311)
....+....+..++. +|| .++.|++++++.|.+.+
T Consensus 149 ~~~~~~~~~~~~~~e------~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 149 EGVALAGRFGCLFFE------VSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHHHHHTCEEEE------CCSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEE------EeecCccccHHHHHHHHHHHH
Confidence 133444555666655 788 78899999999998765
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=158.83 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=112.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc-----ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM-----SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~-----~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
..++|+++|++++|||||+|+|++..... ......+.|....+..+.+ ++..+.||||||+. .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------H
Confidence 46899999999999999999999876110 1112346777777777777 78899999999953 2
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+...+...+..+|++|+|+|++++........+..+.. .+ .|+++|+||+|+.+. ..++....+ +..+
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~~--~~~~~~~~~-----l~~~ 153 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAGT--EEIKRTEMI-----MKSI 153 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence 44445556788999999999987777777777766654 33 478999999998754 444433333 4555
Q ss_pred HHhc----CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLC----DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~----~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+... +.++++ +||.++.|+.+|++.|...++.
T Consensus 154 l~~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 154 LQSTHNLKNSSIIP------ISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHSSSGGGCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhhhcccccceEEE------EECcCCCCHHHHHHHHHHhhcC
Confidence 5544 344554 7888999999999999987653
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=149.56 Aligned_cols=172 Identities=17% Similarity=0.104 Sum_probs=106.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.+|+|||||+|++++.... ......++|.......+.+.++..+.||||||..+. ....+....
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~-~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~ 74 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA-FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQK 74 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCT-GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHH
Confidence 3589999999999999999999887421 112245677777777776535678999999995431 111112334
Q ss_pred HhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++|+|+|++++-+..+. .+..++..+.......|+++|+||+|+... ....+... .....+..+....
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~-v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQ-IMMKNLSETSSEF 151 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHH-HHHHHHHHHHHHc
Confidence 4456789999999999855444442 334444443321223699999999998763 12211000 0011245566666
Q ss_pred C---CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 D---NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
| ..++. +|+.+ .++.+++..+..
T Consensus 152 g~~~~~~~~------tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 152 GFPNLIGFP------TSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp TCCSCEEEE------CCTTS-SHHHHHHHHHHH
T ss_pred CCCCeEEEE------eeecC-ChHHHHHHHHHH
Confidence 5 34444 56666 666666666544
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=141.64 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... ... .+...... ...+.+ ++ ..+.||||||.... .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~-~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-ENY-VPTVFENY-TASFEI-DTQRIELSLWDTSGSPYY-----------D 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSC-CCCSEEEE-EEEEES-SSSEEEEEEEEECCSGGG-----------T
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCc-CCccceeE-EEEEEE-CCEEEEEEEEeCCCcHhh-----------h
Confidence 45689999999999999999999987642 111 11111111 122333 33 47899999996542 2
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCch
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP 169 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~ 169 (311)
.....++..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+.... ..+.+.... .....
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhccch-hhhhhhcccccCCCCHHH
Confidence 223446788999999999985433333 245556665443 35999999999986431 111111110 00112
Q ss_pred HHHHHHhcC-CcEEEecCCchhhhh-hHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCD-NRCVLFDNKTKDAAK-RTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~-~~~~~f~~~~~~sa~-~~~~i~~l~~~i~~~~ 209 (311)
...+....+ ..++. +||. ++.|++++++.|.+.+
T Consensus 167 ~~~~~~~~~~~~~~e------~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 167 GANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEE------eeeccCCcCHHHHHHHHHHHH
Confidence 344555545 35554 7887 6899999999988764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=142.76 Aligned_cols=166 Identities=18% Similarity=0.088 Sum_probs=98.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++... .... .+ |..... ..+... ....+.||||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~--~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY--VP-TVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------- 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------CBCCCC-------CEEECCCC-CTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC--CC-eeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence 4569999999999999999999997653 1111 11 111111 112220 22356799999976532
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh---hhcCCchH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL---GRECPKPL 170 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~---~~~~~~~~ 170 (311)
.....++..+|++++|+|++++.+.... .++..+....+ ..|+++|+||+|+... ....... ........
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~ 145 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQG 145 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC--cccccccccCCCCCHHHH
Confidence 2234557889999999999854433332 45666666543 3599999999998755 2210000 00000113
Q ss_pred HHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+. .++. +||.++.|++++++.|.+.+
T Consensus 146 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 146 EELKKLIGAPAYIE------CSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 344444454 5554 78889999999999998765
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=158.43 Aligned_cols=159 Identities=21% Similarity=0.269 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF-DSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~-~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.||+|||||+|+|++.... .....+++|.+.....+.+ ++..+.||||||+. ++....+.+. + ....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~g--i-~~~~ 318 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLG--I-ERTL 318 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCC--H-HHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHH--H-HHHH
Confidence 79999999999999999999987632 1233467777777777777 88999999999988 5432111100 0 0111
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++|+|+|++++.+..+..+++.+ . ..|+++|+||+|+... ...++ +..+.. .+.
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~--~~~~~---------~~~~~~-~~~ 379 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEK--INEEE---------IKNKLG-TDR 379 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC--CCHHH---------HHHHHT-CST
T ss_pred HHhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECcccccc--cCHHH---------HHHHhc-CCC
Confidence 224567999999999877776665555433 1 2599999999998643 22221 222222 223
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+++. +||.++.|+++|++.|.+.+
T Consensus 380 ~~i~------iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 380 HMVK------ISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TEEE------EEGGGTCCHHHHHHHHHHHT
T ss_pred cEEE------EECCCCCCHHHHHHHHHHHH
Confidence 4554 79999999999999998864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-19 Score=143.26 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=93.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|++|+|||||+|++++.... .... |.......+.+ ++..+.+|||||.... ...
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~----t~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVP----TLHPTSEELTI-AGMTFTTFDLGGHIQA-----------RRV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C----CCCCSCEEEEE-TTEEEEEEEECC---------------CCG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCC----CCCceeEEEEE-CCEEEEEEECCCcHhh-----------HHH
Confidence 45689999999999999999999987642 1111 22222344555 7789999999996542 223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHH--H
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKE--I 173 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~--~ 173 (311)
+..++..+|++++|+|++++-+-.. ..++..+.... .....|+++|+||+|+... ....+.+++.......-.. .
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence 3455778999999999985433222 22233222211 1123599999999998643 1112222211100000000 0
Q ss_pred HH---hcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 174 LQ---LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 174 ~~---~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+. ..+..++ .+||.++.|+++++++|.+
T Consensus 165 ~~~~~~~~~~~~------~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 165 LKELNARPLEVF------MCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTTCCSCCEEEE------ECBTTTTBSHHHHHHHHHT
T ss_pred cccccCceEEEE------EEECCCCCCHHHHHHHHHH
Confidence 00 0112233 3788999999999999865
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=157.91 Aligned_cols=179 Identities=16% Similarity=0.232 Sum_probs=109.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH-H
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV-K 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~-~ 96 (311)
...++|+++|++|||||||+|+|+|..... ....+++|.......+.+ ++..+.+|||||+........+..+.+. .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~-v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE-ECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccc-cCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHH
Confidence 346899999999999999999999986422 233456777666667777 8889999999998532111000000000 0
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....++..+|++++|+|++.+.+..+..+...+.. . ..|+++|+||||+.+.......++... +...+..
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 325 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-R----GRASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYF 325 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-T----TCEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECccCCCchhhHHHHHHHH-----HHHHhcc
Confidence 01122445799999999987777766655555543 2 359999999999876522223322221 2222222
Q ss_pred c-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 177 C-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 177 ~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
. +.+++. +||.++.|+.+|++.+.+.+.....
T Consensus 326 ~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 326 IDYSPLIF------TSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp GTTSCEEE------CBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred CCCCcEEE------EECCCCCCHHHHHHHHHHHHHhhcc
Confidence 1 334444 7899999999999999988766433
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=143.26 Aligned_cols=168 Identities=17% Similarity=0.076 Sum_probs=105.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++... ..... + ++.......+.+ ++ ..+.||||||......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~-~-t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYI-P-TVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-C-SSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-CccCC-C-ccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 4569999999999999999999997653 22111 1 111111223333 44 3899999999865421
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh-hcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG-RECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~-~~~~~~~~~ 172 (311)
.+..++..+|++|+|+|++++-+... ..++..+....+ ..|+++|+||+|+... ........ .........
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 22345788999999999985433333 245666665543 3599999999998654 22100000 000111334
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+. .++. +||.++.|++++++.|.+.+..
T Consensus 147 ~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYIE------CSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEEE------ccCCCCCCHHHHHHHHHHHHhh
Confidence 4455554 5555 7888999999999999887754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-18 Score=136.94 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+|+|.+|+|||||+|++++... .. ...++.|....... + . .+.+|||||+.+....+....+.+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~t~~~~~~~--~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RR-GKRPGVTRKIIEIE--W-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SS-SSSTTCTTSCEEEE--E-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-cc-CCCCCccceeEEEe--c-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 6899999999999999999999874 22 22345555444333 2 2 789999999876544333323333333322
Q ss_pred c----cCCccEEEEEEECCCCCChh------------HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 101 A----KDGIHAVLLVFSIRNRFSKE------------EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 101 ~----~~~~d~il~v~d~~~~~~~~------------~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+ ...++++++|+|.+ .+... +...+..+.. ...|+++|+||+|+... . .+.
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~--~~~--- 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN--V--QEV--- 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC--H--HHH---
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCc--H--HHH---
Confidence 2 44567888888876 32211 1112222222 23599999999998765 2 111
Q ss_pred cCCchHHHHHHhcCCc-------EEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 165 ECPKPLKEILQLCDNR-------CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~-------~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+....+.. ++. +||.++.|+++++++|.+.+.+.
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 142 -----INFLAEKFEVPLSEIDKVFIP------ISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp -----HHHHHHHHTCCGGGHHHHEEE------CCTTTCTTHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHhhhhhhccCCcEEE------EecCCCCCHHHHHHHHHHhcchh
Confidence 22333333432 343 78889999999999999877653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-19 Score=159.19 Aligned_cols=172 Identities=19% Similarity=0.251 Sum_probs=84.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCh--
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SGVTKTCEMQRTMLK-AG--QVVNVIDTPGLFDSSADP-- 87 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~~T~~~~~~~~~~~-~~--~~l~liDTPG~~~~~~~~-- 87 (311)
..-.++|+|+|++|+|||||+|.|+|......+... ...|.......+.+. .+ ..+++|||||+++.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 334588999999999999999999997653222110 112222222222111 12 268999999998642111
Q ss_pred -HHHHHHHHHHHH-----------hcc--CCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 88 -EFVSKEIVKCIG-----------MAK--DGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 88 -~~~~~~~~~~~~-----------~~~--~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
..+...+...+. ..+ +.+|++||+++.+ +.+...+..++..+.. ..|+|+|+||+|++.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 112221222111 112 3466788888765 6788888766665542 258999999999886
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
. ..+..+... +...+...+.+++.| |+.++.++..++..+..
T Consensus 182 ~--~ev~~~k~~-----i~~~~~~~~i~~~~~------sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 182 P--EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKD 223 (418)
T ss_dssp H--HHHHHHHHH-----HHHHHHHHTCCCCCC------C----------------
T ss_pred H--HHHHHHHHH-----HHHHHHHcCCeEEeC------CCCCCcCHHHHHHHHHh
Confidence 6 555554443 555555556655543 23333444444444433
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-18 Score=148.12 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=102.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CC----------------------ccee-----------
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SG----------------------VTKT----------- 58 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~----------------------~T~~----------- 58 (311)
+....++|+|+|.+|+|||||+|+|+|....+..... ++ +|..
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999998764322110 11 1110
Q ss_pred ------------EEEEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEE-EEEECCCCCChhHH
Q 021534 59 ------------CEMQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVL-LVFSIRNRFSKEEG 123 (311)
Q Consensus 59 ------------~~~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il-~v~d~~~~~~~~~~ 123 (311)
.....+.......+.||||||+.+... ..+.+...+...+..++..+++++ +|+|++..++..+.
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 001111111246899999999886431 012223344455555566777665 78999866766653
Q ss_pred -HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHH
Q 021534 124 -AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLL 202 (311)
Q Consensus 124 -~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~ 202 (311)
.++..+. . ...|+++|+||+|+.... ....+.+... +..+...+++ ...+||.++.|+++++
T Consensus 182 ~~~~~~~~---~--~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~--------~~~~~~~~~~---v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 182 LKIAKEVD---P--QGQRTIGVITKLDLMDEG-TDARDVLENK--------LLPLRRGYIG---VVNRSQKDIDGKKDIT 244 (299)
T ss_dssp HHHHHHHC---T--TCSSEEEEEECGGGSCTT-CCCHHHHTTC--------SSCCTTCEEE---CCCCCCBCTTSCBCHH
T ss_pred HHHHHHhC---C--CCCeEEEEEEccccCCCC-chHHHHHhCC--------cCcCCCCcEE---EECCChhhccccccHH
Confidence 3333332 1 235999999999987552 1122222210 0001111222 2346888889999999
Q ss_pred HHHHHH
Q 021534 203 SLVNSV 208 (311)
Q Consensus 203 ~~i~~~ 208 (311)
+.|.+.
T Consensus 245 ~~l~~~ 250 (299)
T 2aka_B 245 AALAAE 250 (299)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-19 Score=153.80 Aligned_cols=162 Identities=11% Similarity=0.030 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++.... .. ..|.......+.. .+..+.||||||..... ..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~ 225 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PL 225 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE-EE----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------CS
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC-Cc----ccccceEEEEEec-CcEEEEEEECCCCHhHH-----------HH
Confidence 35679999999999999999999987742 21 1355566666766 78899999999954422 22
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
...++..+|++|+|+|++++-+... ..+...+..... ...|+++|+||+|+... ....+....... ....
T Consensus 226 ~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~--~~~~~i~~~~~~----~~~~ 297 (329)
T 3o47_A 226 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA--MNAAEITDKLGL----HSLR 297 (329)
T ss_dssp HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC--CCHHHHHHHHTC----TTCC
T ss_pred HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCCcc--cCHHHHHHHhch----hhhh
Confidence 3334678899999999984433322 222222222111 23599999999998765 333222221000 0000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||.++.|++++++.|.+.+.
T Consensus 298 ~~~~~~~~------vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 HRNWYIQA------TCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp SSCEEEEE------CBTTTTBTHHHHHHHHHHHHT
T ss_pred cCCCEEEE------EECCCCcCHHHHHHHHHHHHH
Confidence 11222333 788899999999999988764
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=147.00 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=103.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.+.|+++|.+|+|||||+|+|+|.... .....++|.......+.+ ++..+.+|||||+... ... .+.+.+...+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~--~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~-lp~-~lve~f~~tl~ 253 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK--VDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG-IPP-QIVDAFFVTLS 253 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS-CCG-GGHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc--ccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhc-CCH-HHHHHHHHHHH
Confidence 345999999999999999999998752 223345666666666777 7889999999998542 112 22233443333
Q ss_pred hccCCccEEEEEEECCCCC--ChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 100 MAKDGIHAVLLVFSIRNRF--SKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
.+..+|++++|+|++++. ..... .+...+... +. ...|+++|+||+|+... . ....+.. +..+...
T Consensus 254 -~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~ 322 (364)
T 2qtf_A 254 -EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKE 322 (364)
T ss_dssp -GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHH
T ss_pred -HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHH
Confidence 467789999999998553 12222 233444443 22 13589999999998754 2 1111111 1122222
Q ss_pred c-CC--cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 C-DN--RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~-~~--~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
. .. .++ ++|+.++.|+++|++.|.+.+..
T Consensus 323 l~~~~~~~~------~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 323 LYSPIFDVI------PISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HCSCEEEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcCCCCcEE------EEECCCCcCHHHHHHHHHHHhcc
Confidence 2 11 233 37889999999999999988765
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-19 Score=154.77 Aligned_cols=175 Identities=16% Similarity=0.101 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+|+|.+|||||||+|+|++.... ....+.+|.......+.+.++..+.||||||+.+.......+...+...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~--- 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH--- 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH---
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHH---
Confidence 46899999999999999999987642 2333455666556666663347999999999753211111122223222
Q ss_pred ccCCccEEEEEEECCC---CCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 101 AKDGIHAVLLVFSIRN---RFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..+|++|+|+|+++ +-...+ ..++..+..+...-...|+++|+||+|+... ... +..+...
T Consensus 234 -i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~-----------~~~l~~~ 299 (342)
T 1lnz_A 234 -IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEK 299 (342)
T ss_dssp -HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHH
T ss_pred -HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHH-----------HHHHHHH
Confidence 234699999999974 222222 3444555554322234699999999998743 210 1223333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC-CCCc
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG-QPYT 218 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~-~~~~ 218 (311)
+... .....+||.++.++++|+..|.+.+.+... ..|+
T Consensus 300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~ 338 (342)
T 1lnz_A 300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYD 338 (342)
T ss_dssp CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence 3321 112337888899999999999998866443 3444
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=148.99 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=102.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEee--------------C--------CceEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLK--------------A--------GQVVN 73 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~--------------~--------~~~l~ 73 (311)
....++|+++|++++|||||+|+|+|...... .....+.|....+....+. . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 44679999999999999999999997642111 1112345665544332221 0 15799
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
||||||+ +.+.......+..+|++|+|+|++++. .......+..+.. .+. .|+++++||+|+..
T Consensus 85 iiDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 85 FVDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp EEECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred EEECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence 9999994 334455555667889999999998665 5566666655543 332 48999999999876
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
. ........+ +..++... +.++++ +||.++.|+++|++.|...++
T Consensus 150 ~--~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 150 E--KQAEENYEQ-----IKEFVKGTIAENAPIIP------ISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp T--TTTTTHHHH-----HHHHHTTSTTTTCCEEE------C------CHHHHHHHHHHHSC
T ss_pred H--HHHHHHHHH-----HHHHHhhcCCCCCeEEE------eeCCCCCCHHHHHHHHHHhCC
Confidence 5 221111111 33333321 334454 789999999999999998664
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-19 Score=161.41 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=109.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc-eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ-VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~-~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
|....++|+|+|++|+|||||+|+|++...... ....++|.......+.+ .+. .+.||||||+.++..........
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~l~liDTpG~~d~~~l~~~~~~~- 106 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEK- 106 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEE-TTTEEEEEEECSSTTCCCTTCCCCHHH-
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEE-CCCCeEEEEECcCCCcccchhHHHHHH-
Confidence 455679999999999999999999999875222 23456777777777777 554 99999999998764322211111
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...++..+|++|+|+|+ .....+..++..+.+. ..|+++|+||+|+... ... +. ...+.
T Consensus 107 ---~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~--~~~-~~--------~~~l~ 165 (423)
T 3qq5_A 107 ---ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGE--KAE-EL--------KGLYE 165 (423)
T ss_dssp ---HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTC--CCT-HH--------HHHSS
T ss_pred ---HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCc--cHH-HH--------HHHHH
Confidence 22346678999999998 4556667777777764 3599999999998765 222 11 11122
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++.+++ .+||.++.|++++++.|.+.++.
T Consensus 166 ~~~g~~v~------~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 166 SRYEAKVL------LVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CCTTCCCC------CCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHcCCCEE------EEECCCCCCHHHHHHHHHHhhhh
Confidence 22343333 37888899999999999998854
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=136.20 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
....++|+|+|.+|+|||||+|+++|... +.....+ ++.......+.+ ++. .+.+|||+|... .
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~--~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~----- 100 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMV-DGESATIILLDMWENKG-----E----- 100 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H-----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc--cceeeEEEEEEE-CCeeeEEEEeecCCCcc-----h-----
Confidence 34568999999999999999999997542 2222122 222222333444 554 567899999432 0
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.......++..+|++|+|+|++++-+-.. ..++..+..... ....|+++|.||+|+.....-..++ ...
T Consensus 101 ~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~ 170 (211)
T 2g3y_A 101 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRA 170 (211)
T ss_dssp HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHH
Confidence 11223456788999999999985433222 223333433211 1235999999999986431111111 122
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....+..++. +||.++.|++++++.|.+.+.
T Consensus 171 ~a~~~~~~~~e------~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 171 CAVVFDCKFIE------TSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHHHTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 23334555554 789999999999999987664
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=150.62 Aligned_cols=166 Identities=16% Similarity=0.234 Sum_probs=109.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCCcceeEEEEEEEeeC----------------------CceEEE
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM-SKAGSSGVTKTCEMQRTMLKA----------------------GQVVNV 74 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-~~~~~~~~T~~~~~~~~~~~~----------------------~~~l~l 74 (311)
...++|+++|++|+|||||+|+|+|..... ......+.|....+....+.. ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 456899999999999999999999764211 111124556655544433310 157999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 75 IDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 75 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|||||+. .+.......+..+|++|+|+|++++. .......+..+..+ +. .|+++|+||+|+...
T Consensus 88 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 88 IDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK 152 (410)
T ss_dssp EECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred EECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH
Confidence 9999943 24444445566789999999998665 56666666655543 32 489999999998765
Q ss_pred ChhcHHHHhhhcCCchHHHHHHh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 154 NDETLEDYLGRECPKPLKEILQL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+...+ +..++.. .+.++++ .||.++.|+++|++.|...++.
T Consensus 153 --~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 --EKALENYRQ-----IKEFIEGTVAENAPIIP------ISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --HHHHHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHH-----HHHHHHhcCcCCCeEEE------eeCCCCCCHHHHHHHHHHhCCC
Confidence 322222222 3444433 1334554 7888999999999999986653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=151.87 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=107.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCCcceeEEEEEEE
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK-----------------------------AGSSGVTKTCEMQRTM 65 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------------------~~~~~~T~~~~~~~~~ 65 (311)
.+....++|+++|++|+|||||+|+|++....... ....+.|.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 45567799999999999999999999765321000 0114678888888888
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCC-------hhHHHHHHHHHHHhCCCcc
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS-------KEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~ 138 (311)
+ .+..+.||||||+.+ +...+..++..+|++|+|+|++++.. ......+..+.. .+.
T Consensus 92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v--- 155 (439)
T 3j2k_7 92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV--- 155 (439)
T ss_pred c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---
Confidence 7 788999999999654 34444445667899999999986543 345555554443 332
Q ss_pred CeEEEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCC------cEEEecCCchhhhhhHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCDN------RCVLFDNKTKDAAKRTEQVGKLLS 203 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~f~~~~~~sa~~~~~i~~l~~ 203 (311)
.++++++||+|+... .....++.... +..++..++. .+++ +||.++.|+.++.+
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~------iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMP------CSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEE------eeccCCcccccccc
Confidence 249999999998642 11223322222 4455554442 2333 78889999988544
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=151.26 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=110.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCc-------cccc---cC-----CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKK-------AFMS---KA-----GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~-------~~~~---~~-----~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....++|+++|++|+|||||+|+|++.. .+.. .. ...+.|.......+.+ .+..+.||||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCCh
Confidence 34566999999999999999999998731 0000 00 0135566665555655 6789999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE 159 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~ 159 (311)
.++ ......++..+|++|+|+|++++........+..+... + .| +++++||+|+..+ ...++
T Consensus 86 ~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~~-~~~~~ 148 (405)
T 2c78_A 86 ADY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFMNKVDMVDD-PELLD 148 (405)
T ss_dssp GGG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCCC-HHHHH
T ss_pred HHH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEECccccCc-HHHHH
Confidence 752 22333446788999999999877777777777666542 2 36 8999999998753 12222
Q ss_pred HHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHH------------------HHHHHHHHHHHHH
Q 021534 160 DYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQ------------------VGKLLSLVNSVIV 210 (311)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~------------------i~~l~~~i~~~~~ 210 (311)
....+ +..++..++ .++++ .||.++.+ +.+|++.|...++
T Consensus 149 ~~~~~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 149 LVEME-----VRDLLNQYEFPGDEVPVIR------GSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHH-----HHHHHHHTTSCTTTSCEEE------CCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHH-----HHHHHHHhcccccCCCEEE------ccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 22222 455555544 34444 67777776 7788888887664
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-18 Score=150.89 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=84.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC--cc-----------e---------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG--VT-----------K--------------------------- 57 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~--~T-----------~--------------------------- 57 (311)
..-++|+|+|.+|||||||+|+|+|...++.+.+... .+ .
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3456999999999999999999999876555432110 00 0
Q ss_pred ------------eEEEEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHH
Q 021534 58 ------------TCEMQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG 123 (311)
Q Consensus 58 ------------~~~~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~ 123 (311)
......+.......++||||||+.+... ....+...+...+..++.++|++|+|+|.... .....
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~ 190 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGC
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCH
Confidence 0001111111345799999999987532 12334555666667778899999999987522 11222
Q ss_pred HHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 124 AAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 124 ~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++..+..+.. ...|+++|+||+|++..
T Consensus 191 ~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 191 DAIKISREVDP--SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence 34444544332 23589999999998865
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=151.40 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccC-------------CCCCcceeEEEEEEEe----eCCceEEEEeCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKA-------------GSSGVTKTCEMQRTML----KAGQVVNVIDTPG 79 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-------------~~~~~T~~~~~~~~~~----~~~~~l~liDTPG 79 (311)
..+.++|+++|++|+|||||+|+|++........ .....+.........+ .....+.||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3456999999999999999999999853211000 0000000000000000 0125789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcH
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETL 158 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~ 158 (311)
+.+ +.......+..+|++|+|+|++++. .......+..+... +. +|+++|+||+|+.+. ...
T Consensus 85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~ 147 (403)
T 3sjy_A 85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEA 147 (403)
T ss_dssp CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHH
T ss_pred cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHH
Confidence 654 3333334467789999999999665 55566666665543 32 489999999998865 433
Q ss_pred HHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 159 EDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.... +...+..+ +.++++ +||.++.|+.+|++.|.+.++.
T Consensus 148 ~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 148 LSQYRQ-----IKQFTKGTWAENVPIIP------VSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHH-----HHHHHHhhCCCCCEEEE------EECCCCcChHHHHHHHHHhCCC
Confidence 333332 34444332 234554 7889999999999999986643
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-18 Score=153.06 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=102.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC-----------------CCCCcceeEEEEEEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KA-----------------GSSGVTKTCEMQRTM 65 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~-----------------~~~~~T~~~~~~~~~ 65 (311)
....++|+++|++|+|||||+|+|++...... +. ...+.|....+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34568999999999999999999986531000 00 002456666666666
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
. .+..+.||||||+.+. ...+..++..+|++|+|+|++++........+..+.. .+. +|+++|+
T Consensus 101 ~-~~~~~~iiDtpGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvvi 164 (434)
T 1zun_B 101 T-AKRKFIIADTPGHEQY-----------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAI 164 (434)
T ss_dssp C-SSEEEEEEECCCSGGG-----------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEE
T ss_pred c-CCceEEEEECCChHHH-----------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEE
Confidence 6 7789999999997652 2222334678899999999997777777666665554 332 3799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|+.......+...... +..++..++ .++++ +||.++.|+.+
T Consensus 165 NK~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~i~------vSA~~g~gi~~ 213 (434)
T 1zun_B 165 NKMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAFVP------MSALKGDNVVN 213 (434)
T ss_dssp ECTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEEEE------CCTTTCTTTSS
T ss_pred EcCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceEEE------EeccCCCCccc
Confidence 9999875321223333332 556666666 23333 67777888776
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=135.06 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=92.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCCcceeEEEEEEEe----eCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK-AFMSKAGSSGVTKTCEMQRTML----KAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~~~~~~T~~~~~~~~~~----~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.++|+|+|.+|||||||+|++++.. .+.. ...+..+.......+.+ .....+.+|||||.. .+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~ 69 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG-MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------EF 69 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH-----------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC-CcceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------HH
Confidence 4799999999999999999999863 2211 11111222222222211 034588999999942 22
Q ss_pred HHHHHhccCCccEEEEEEECCCCCC-hh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFS-KE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~-~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
......++.++|++++|+|++++.+ .. -..++..+..... ..|+++|.||+|+... ..+...... ....
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~ 140 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVSDE--KQRKACMSK----ITKE 140 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGCCH--HHHHHHHHH----HHHH
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcccc--hhhHHHHHH----HHHH
Confidence 2223334556799999999985432 11 2344444444332 3599999999997654 333211111 0112
Q ss_pred HHHhcCCc----EEEecCCchhhhhhHH-HHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNR----CVLFDNKTKDAAKRTE-QVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~----~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~~~ 211 (311)
+....+.. ++. +||.++. ++.+|++.|.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~------~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 141 LLNKRGFPAIRDYHF------VNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTTCTTSCEEEEEEE------CCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcchhheEE------EecccCchhHHHHHHHHHHHHhc
Confidence 22223333 333 6777774 899999999877653
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=155.83 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=105.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC--------------------------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS-------------------------------------------- 53 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~-------------------------------------------- 53 (311)
...++|+|+|.+|+|||||+|+|+|...+|.+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 355899999999999999999999988766543211
Q ss_pred -----CcceeEEEEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhcc-CCccEEEEEEECCCCCChhHH-H
Q 021534 54 -----GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAK-DGIHAVLLVFSIRNRFSKEEG-A 124 (311)
Q Consensus 54 -----~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~-~~~d~il~v~d~~~~~~~~~~-~ 124 (311)
+.+.......+..+....++||||||+..... ....+...+...+..+. ..+|++++|+|+++.+...+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00111112222332445799999999987431 11222223333333323 578999999999877777665 4
Q ss_pred HHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHH
Q 021534 125 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSL 204 (311)
Q Consensus 125 ~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~ 204 (311)
++..+.. ...|+++|+||+|.+..... ....... ...... ..|......||.++.|+++|++.
T Consensus 209 ll~~L~~-----~g~pvIlVlNKiDlv~~~~~-~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 209 IAKEVDP-----QGQRTIGVITKLDLMDEGTD-ARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp HHHHHCT-----TCSSEEEEEECTTSSCTTCC-SHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEHHHH
T ss_pred HHHHHHh-----cCCCEEEEEeCcccCCcchh-hHHHHHH----------Hhhhhh-ccCCceEEecccccccchhHHHH
Confidence 5444432 23599999999999865211 1111110 000000 01222344788899999999999
Q ss_pred HHH
Q 021534 205 VNS 207 (311)
Q Consensus 205 i~~ 207 (311)
|..
T Consensus 272 I~~ 274 (772)
T 3zvr_A 272 LAA 274 (772)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=159.78 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=85.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc----------------cc----CCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM----------------SK----AGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~----------------~~----~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
..++|+|+|++|+|||||+|+|++..... .. ....+.|.......+.+ .+..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 46899999999999999999997221100 00 00134555555666777 88899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.++. ..+..++..+|++|+|+|++++.+..+..++..+... ..|+++|+||+|+...
T Consensus 91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence 998753 1233456778999999999988888777777665542 2599999999998644
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-17 Score=145.50 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=110.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc------cc----cc----CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA------FM----SK----AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~------~~----~~----~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
+.++|+++|++|+|||||+|+|++... +. .. ....+.|.......+.. .+..+.||||||+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~--- 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHA--- 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChH---
Confidence 458999999999999999999987421 00 00 00235566665555555 67899999999953
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHHhh
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
.+...+..++..+|++|+|+|++++........+..+.. .+ .| +++++||+|+..+ ...++....
T Consensus 78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~~~-~~~~~~~~~ 143 (397)
T 1d2e_A 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG----VEHVVVYVNKADAVQD-SEMVELVEL 143 (397)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCCEEEEEECGGGCSC-HHHHHHHHH
T ss_pred --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCeEEEEEECcccCCC-HHHHHHHHH
Confidence 244455566789999999999987777777776665554 23 36 7899999998753 122222222
Q ss_pred hcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHH---------H-HHHHHHHHHHHHHH
Q 021534 164 RECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTE---------Q-VGKLLSLVNSVIVQ 211 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~---------~-i~~l~~~i~~~~~~ 211 (311)
+ +..++..++ .++++ .||.++. + +.+|++.|.+.++.
T Consensus 144 ~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 144 E-----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp H-----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred H-----HHHHHHHcCCCcccCcEEE------eehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2 455565554 24444 6777655 4 88999999887653
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=154.30 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCCcceeEEEEEEEeeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM-----------------------------SKAGSSGVTKTCEMQRTMLKAG 69 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~ 69 (311)
+.++|+++|++|+|||||+|+|++..... ......+.|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 46899999999999999999997652100 0011236777777777777 78
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeEE
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 142 (311)
..+.||||||+.+ +...+..++..+|++|+|+|++++ +.....+.+..+.. .+. .|++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8999999999754 333344456789999999999854 33445555544443 332 4799
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~ 200 (311)
+|+||+|+........++.... +..++...+. .+++ +||.++.|+.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEEEE------CCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------EeeecCCCccc
Confidence 9999999876422334433333 4555554443 2333 56777777653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=147.99 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CCcceeEEEEEEEee-CCc--eEEEEeCCCCCCCCC-----
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----SGVTKTCEMQRTMLK-AGQ--VVNVIDTPGLFDSSA----- 85 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----~~~T~~~~~~~~~~~-~~~--~l~liDTPG~~~~~~----- 85 (311)
-.++|+|+|++|+|||||+|+|++...+.....+ ...|.......+.+. .+. .++||||||+++...
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4589999999999999999999987665433211 123433333332221 333 789999999976432
Q ss_pred --ChHHHHHHHHHHHHhc---------cCCccEEEEEEEC-CCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 --DPEFVSKEIVKCIGMA---------KDGIHAVLLVFSI-RNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 --~~~~~~~~~~~~~~~~---------~~~~d~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
....+...+..++... ...+|+++|+++. .+++...+..++..+. ...|+|+|+||+|+...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~------~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH------NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC------S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc------cCCCEEEEEECCCCCCH
Confidence 1122222222333221 1346789999986 4678777765555442 23599999999998865
Q ss_pred ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHH---HHHHHHHHHHHH
Q 021534 154 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQ---VGKLLSLVNSVI 209 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~---i~~l~~~i~~~~ 209 (311)
..+..+... +...+..++.+++. +|+.++.+ +..+...|...+
T Consensus 190 --~ev~~~k~~-----i~~~~~~~~i~~~~------~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 --KERERLKKR-----ILDEIEEHNIKIYH------LPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp --HHHHHHHHH-----HHHHTTCC-CCSCC------CC---------CHHHHHHHHHTC
T ss_pred --HHHHHHHHH-----HHHHHHHCCCCEEe------CCCcCCCcchhHHHHHHHHHhcC
Confidence 555443333 45555555555554 34444444 344444444433
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=140.58 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=98.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CC----------------------ccee-------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SG----------------------VTKT------------- 58 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~----------------------~T~~------------- 58 (311)
...++|+|+|.+|+|||||+|+|+|....+..... ++ +|..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34589999999999999999999998764332211 11 0000
Q ss_pred ----------EEEEEEEeeCCceEEEEeCCCCCCCCCC--hHHHHHHHHHHHHhccCC-ccEEEEEEECCCCCChhHHHH
Q 021534 59 ----------CEMQRTMLKAGQVVNVIDTPGLFDSSAD--PEFVSKEIVKCIGMAKDG-IHAVLLVFSIRNRFSKEEGAA 125 (311)
Q Consensus 59 ----------~~~~~~~~~~~~~l~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~-~d~il~v~d~~~~~~~~~~~~ 125 (311)
.....+....+..++||||||+.+.... ...+.+.+...+..++.. .+++++|+|++..+...+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-- 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-- 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--
Confidence 0001111112468999999998764221 122333444444444444 4566667788755665553
Q ss_pred HHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHH
Q 021534 126 IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLV 205 (311)
Q Consensus 126 l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i 205 (311)
+..+..+.. ...|+++|+||+|+.... ....+.+... . ......++. ....||.++.|+.++++.+
T Consensus 187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~-~-------~~l~~~~~~---v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 187 LKVAKEVDP--QGQRTIGVITKLDLMDEG-TDARDVLENK-L-------LPLRRGYIG---VVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp HHHHHHHCT--TCTTEEEEEECGGGSCTT-CCCHHHHTTC-S-------SCCTTCEEE---CCCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHhCc--CCCceEEEeccccccCcc-hhHHHHHhCC-c-------ccccCCceE---EEeCCcccccccccHHHHH
Confidence 233333322 235899999999987551 1122222210 0 000112222 2346888999999999888
Q ss_pred HH
Q 021534 206 NS 207 (311)
Q Consensus 206 ~~ 207 (311)
..
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-19 Score=146.93 Aligned_cols=166 Identities=14% Similarity=0.028 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|++++...... . .+++.......+.+ ++ ..+.||||||..+ +
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~ 91 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-Y--IPTVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------Y 91 (204)
Confidence 35679999999999999999999997654211 1 11111111222222 33 3566999999654 2
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~ 167 (311)
......++..+|++|+|+|++++.+..+ ..++..+....+ ..|+++|+||+|+... ....+.... ...
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
Confidence 2333445678899999999985433333 245555554332 3599999999998754 211111100 001
Q ss_pred chHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 168 ~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.....+....+. +++ .+||.++.|++++++.|.+.
T Consensus 167 ~~~~~~~~~~~~~~~~------~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 167 PQGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 112222333232 233 47999999999999988654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=156.88 Aligned_cols=158 Identities=17% Similarity=0.193 Sum_probs=106.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccC-----------------------------CCCCcceeEEEEEEEee
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKA-----------------------------GSSGVTKTCEMQRTMLK 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~ 67 (311)
....++|+++|++|+|||||+|+|++........ ...|.|.......+.+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 3567899999999999999999999764311100 0146677777777777
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
.+..+.||||||+.+ +...+..++..+|++|+|+|++++ ........+..+.. .+. .|
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HN 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CE
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---Ce
Confidence 788999999999765 455556678889999999999843 23344444444433 332 46
Q ss_pred EEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHHH
Q 021534 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGKL 201 (311)
Q Consensus 141 ~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~l 201 (311)
+++|+||+|+........++.... +..++..++. .+++ +||.++.|+.++
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~i~------vSA~tG~gI~el 362 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYKI 362 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEEEE------CCTTTCTTTSSC
T ss_pred EEEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccEEe------eecccCCCcccc
Confidence 999999999886422333333332 4555555443 3444 788888888754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=131.33 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~~~ 94 (311)
.....+|+++|++|||||||+|+|+|...........|.|..... +.+ .+ .+.+|||||+.+...... ......
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 445689999999999999999999987622111223344443332 233 33 688999999865321111 111111
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..........++++++|+|++.+.+..+..+..++.. . ..|+++|.||+|.... ......+.. +..++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~----~~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~ 166 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-S----NIAVLVLLTKADKLAS--GARKAQLNM-----VREAV 166 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-T----TCCEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-c----CCCeEEEEecccCCCc--hhHHHHHHH-----HHHHH
Confidence 2222222367899999999986666555455554443 2 2489999999998754 222211111 33444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..... .++|+.++.++.++++.|.+....
T Consensus 167 ~~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence 433322222 236788889999999999887643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-18 Score=154.33 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=84.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC--CCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChH----H--
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG--SSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPE----F-- 89 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~----~-- 89 (311)
.++++|+|++|+|||||+|.|+|......... .++.+.....+.+.. .+ ..++++||||+++.. ... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~-~~~~~~~~i~ 119 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQI-NKEDSYKPIV 119 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-C-CHHHHSHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhcc-ccchhhhHHH
Confidence 35699999999999999999999753211111 123332221111111 12 278999999998742 211 1
Q ss_pred --HHHHHHHHHHhc---------cCC--ccE-EEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh
Q 021534 90 --VSKEIVKCIGMA---------KDG--IHA-VLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDND 155 (311)
Q Consensus 90 --~~~~~~~~~~~~---------~~~--~d~-il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~ 155 (311)
+...+...+... ... +|+ ++||+|++++++..|..+++.|. ...|+|+|+||+|.+.+
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~-- 191 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAISK-- 191 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSCH--
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccch--
Confidence 222222222221 112 455 44555777889998877777664 12599999999999876
Q ss_pred hcHHHHhhhcCCchHHHHHHhcCCcEEEec
Q 021534 156 ETLEDYLGRECPKPLKEILQLCDNRCVLFD 185 (311)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 185 (311)
..+..+... +...+...|..++.|+
T Consensus 192 ~E~~~l~~~-----I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 192 SELTKFKIK-----ITSELVSNGVQIYQFP 216 (427)
T ss_dssp HHHHHHHHH-----HHHHHBTTBCCCCCCC
T ss_pred HHHHHHHHH-----HHHHHHHcCCcEEecC
Confidence 555555544 4544444455555544
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-19 Score=166.78 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=111.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|++|+|||||+|+|++.... ....++.|.....+.+.+..+..++||||||+.++.. ...
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~--~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVA--AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHH--HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHH
Confidence 478999999999999999999987642 2234566776666666654567899999999876432 233
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++|+|+|++++....+...+..+... ..|+++++||+|+.......+...+... ......++.
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~~~~~~v~~~l~~~-----~~~~e~~~~ 140 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAEADPEKVKKELLAY-----DVVCEDYGG 140 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTTTSCCSSSSHHHHT-----TSCCCCSSS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccccchHHHHHHHHhh-----hhhHHhcCC
Confidence 456789999999999977877777777666542 2489999999998643211111111110 000111122
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+ .++||.++.|+++|++.|..++.
T Consensus 141 ~~~i----v~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 141 DVQA----VHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SEEE----CCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CceE----EEEECCCCCCchhHHHHHHHhhh
Confidence 2222 34788999999999999988764
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-17 Score=142.62 Aligned_cols=165 Identities=15% Similarity=0.030 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|.+|+|||||+|++++.... .. ..+++.......+.. ++. .+.||||||.... ..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~-~~--~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP-GE--YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC-CS--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC-cc--cCCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hH
Confidence 4589999999999999999999976542 11 122232332333444 555 4559999996542 23
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~~~ 169 (311)
....++..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ....+.... .....
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence 344567889999999999855443332 45566665443 3699999999998654 221111110 01112
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+....+. .++. +||.++.|++++++.|.+.+
T Consensus 294 ~~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHH
Confidence 3445555554 5554 78889999999999998765
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-17 Score=131.08 Aligned_cols=163 Identities=18% Similarity=0.148 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
..++|+++|.+|+|||||+|+++|... +.... .+++.......+.+ ++. .+.+|||+|......
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~---------- 71 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX--EVLGEDTYERTLMV-DGESATIILLDMWENKGENE---------- 71 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----C----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc--cccceeEEEEEEEE-CCeEEEEEEEEeccCcchhh----------
Confidence 458999999999999999999996432 22211 11222222333444 554 567899999653100
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++..+|++++|+|++++-+... ..++..+...... ...|+++|.||+|+.....-...+ ...+.
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a 141 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXA 141 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHH
Confidence 011223445799999999985433222 2344445544321 235899999999976431111111 12222
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +||.++.|++++++.+.+.+.
T Consensus 142 ~~~~~~~~e------~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 142 VVFDXKFIE------TSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HHTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhCCceEE------eccccCCCHHHHHHHHHHHHH
Confidence 334445554 789999999999999887653
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=145.60 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||+|+|+ ..+.|.....+.+.+ .+..+.||||||+.++ ...+ ...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~----~~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSL----ITA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHH----HHH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHH----HHH
Confidence 99999999999999999998 234556666666777 7889999999998763 1112 223
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE-EEEEe-ccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM-IVVFT-GGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ilv~n-k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+..+|++|+|+| +..........+..+.. .+ .|. ++++| |+|+ .. ..++....+ +..++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~----i~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LG----FKHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TT----CCEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cC----CCeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 467899999999 76666666666666554 33 255 88999 9998 43 333322222 4444443331
Q ss_pred c-EEEecCCch--hhhhh---HHHHHHHHHHHHHHHHH
Q 021534 180 R-CVLFDNKTK--DAAKR---TEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~-~~~f~~~~~--~sa~~---~~~i~~l~~~i~~~~~~ 211 (311)
. +.. .. .||.+ +.|+++|++.|.+.++.
T Consensus 147 ~~~~i----i~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWEC----ISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCEE----EECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CceEE----EecccccccCcCCCCHHHHHHHHHhhccc
Confidence 1 111 12 56777 89999999999887653
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=148.59 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=95.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc-ccccc----------------------------CCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK-AFMSK----------------------------AGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~----------------------------~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|++|+|||||+|+|++.. .+... ....+.|.......+.+ .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 456899999999999999999998642 11000 01245677777777777 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
+..+.||||||+.+ +...+..++..+|++|+|+|+++. ........+..+.. .+. .|+
T Consensus 83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTC
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 88999999999876 333445567899999999999854 23334444444333 221 369
Q ss_pred EEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHHHH
Q 021534 142 IVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 142 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~i~ 199 (311)
++++||+|+... ....++..... +..++...+ ..+++ +||.++.|+.
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i~------iSA~~g~~v~ 201 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFVP------VVAPSGDNIT 201 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEEE------CBTTTTBTTT
T ss_pred EEEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecccCcccc
Confidence 999999998763 11223333333 566666655 23444 6777777775
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=129.05 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|++|||||||+|.|+|..... ...+..+.......+.+ ++. .+.+|||||...... .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------I 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 4899999999999999999999876421 12223333444445555 554 567899999654211 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..++++++|+|+.+..+... ..++..+..... ...|+++|+||+|+......... ....++..
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTD---------EARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCHH---------HHHHHHHH
Confidence 1223457899999999985443333 234444444322 23589999999997643111111 12344444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+..++. +|+.++.++.++++.|.+.+.
T Consensus 140 ~~~~~~d------~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NNLSFIE------TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4443333 677888999999999887664
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=151.21 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=99.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc-cccc-------------cC---------------CCCCcceeEEEEEEEeeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK-AFMS-------------KA---------------GSSGVTKTCEMQRTMLKAG 69 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~-~~~~-------------~~---------------~~~~~T~~~~~~~~~~~~~ 69 (311)
..++|+++|++|+|||||+|+|++.. .+.. +. ...+.|..+....+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 45899999999999999999998642 1100 00 0145676666666666 77
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh-------hHHHHHHHHHHHhCCCccCeEE
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK-------EEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i 142 (311)
..+.||||||+.+ +...+..++..+|++|+|+|++++... .....+..+.. .+. .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 8999999999764 444455667899999999999854322 34444443332 332 3599
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~i~ 199 (311)
+|+||+|+.......++..... +..++..++ .++++ +||.++.|+.
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------vSA~~g~nv~ 200 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPKTVPFVP------ISGWNGDNMI 200 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCCEEE------CCTTTCBTTT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCccCceEEE------eecccCcCcc
Confidence 9999999874222333333332 455555544 34554 5666666664
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=151.68 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~~ 82 (311)
.++|+++|++|+|||||+|+|++... ....+.+.|.......+.+. ....++||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 47999999999999999999998654 21122233333222222210 112599999999887
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+... ...++..+|++|+|+|+++++...+...+..+.. . ..|+++++||+|+..
T Consensus 83 F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-~----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRM-Y----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-T----TCCEEEEEECGGGST
T ss_pred HHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-c----CCeEEEEeccccccc
Confidence 5322 2244677899999999998888888777776664 2 249999999999864
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-18 Score=159.87 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=106.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|++|+|||||+++|++... ......+.|.....+.+.+ ++..++||||||+.++... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v--~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV--ASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------R 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH--SBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------B
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC--ccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------H
Confidence 348999999999999999999987543 2222345666666666666 7789999999998775321 2
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++|+|+|++++........+..+.. .+ .|+++++||+|+.......+...+... ..+...++
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~----vPiIVviNKiDl~~~~~~~v~~~l~~~-----~~~~~~~~ 138 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQ----VPVVVAVNKIDKPEADPDRVKNELSQY-----GILPEEWG 138 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TT----CCEEEEEECSSSSTTCCCCTTCCCCCC-----CCCTTCCS
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cC----ceEEEEEEeccccccCHHHHHHHHHHh-----hhhHHHhC
Confidence 344677899999999987777777666665553 22 489999999998643112222111110 00001122
Q ss_pred --CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 --NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 --~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++++ +||.++.|+.+|++.|..
T Consensus 139 ~~~~~v~------vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 139 GESQFVH------VSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSCEEEE------CCTTTCTTCTTHHHHTTT
T ss_pred CCccEEE------EeeeeccCcchhhhhhhh
Confidence 23333 788999999999999864
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-17 Score=152.32 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=100.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEee--C--CceEEEEeCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLK--A--GQVVNVIDTPGL 80 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~--~--~~~l~liDTPG~ 80 (311)
+..++|+++|++|+|||||+++|++....... ....+.|.......+.|. + ...++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45689999999999999999999753210000 001344554444444442 1 257899999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.++ ...+..++..+|++|+|+|++++.+..+...+..+.. . ..|+++++||+|+.... ...
T Consensus 84 ~dF-----------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~----~ipiIvviNKiDl~~a~---~~~ 144 (600)
T 2ywe_A 84 VDF-----------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q----DLVIIPVINKIDLPSAD---VDR 144 (600)
T ss_dssp GGG-----------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T----TCEEEEEEECTTSTTCC---HHH
T ss_pred HhH-----------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C----CCCEEEEEeccCccccC---HHH
Confidence 773 1122333556799999999997877777665554443 2 24899999999987541 221
Q ss_pred HhhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.. ..+...++. .+++ .||.++.|+.+|++.|.+.++.
T Consensus 145 v~--------~el~~~lg~~~~~vi~------vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 145 VK--------KQIEEVLGLDPEEAIL------ASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HH--------HHHHHTSCCCGGGCEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred HH--------HHHHHhhCCCcccEEE------EEeecCCCchHHHHHHHHhccc
Confidence 11 122222232 2333 7899999999999999888764
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=151.51 Aligned_cols=163 Identities=21% Similarity=0.186 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEeeC----CceEEEEeCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLKA----GQVVNVIDTPGLF 81 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~~----~~~l~liDTPG~~ 81 (311)
...+|+++|++|+|||||+++|++....... ....+.|.......+.|.. +..++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4589999999999999999999863210000 0013456655555565521 2589999999987
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
++. ..+ ..++..+|++|+|+|++++.+..+...+..+.. . ..|+++|+||+|+.... ..+.
T Consensus 83 dF~-------~ev----~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~----~ipiIvViNKiDl~~a~---~~~v 143 (599)
T 3cb4_D 83 DFS-------YEV----SRSLAACEGALLVVDAGQGVEAQTLANCYTAME-M----DLEVVPVLNKIDLPAAD---PERV 143 (599)
T ss_dssp GGH-------HHH----HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-T----TCEEEEEEECTTSTTCC---HHHH
T ss_pred HHH-------HHH----HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C----CCCEEEeeeccCccccc---HHHH
Confidence 631 222 233455699999999987777766665554443 2 24999999999987542 2221
Q ss_pred hhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
... +...+......+++ +||.++.|+++|++.|.+.++.
T Consensus 144 ~~e-----i~~~lg~~~~~vi~------vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 144 AEE-----IEDIVGIDATDAVR------CSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHH-----HHHHTCCCCTTCEE------ECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHH-----HHHHhCCCcceEEE------eecccCCCchhHHHHHhhcCCC
Confidence 111 22222111112343 7889999999999999988754
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-17 Score=133.54 Aligned_cols=123 Identities=8% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+|+|++|+|||||+|+|++......... ...|... .+ ....+.+|||||+.... ..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHH
Confidence 34568999999999999999999998764221111 1112111 11 45678999999986532 11222
Q ss_pred HHHhccCCccEEEEEEECC---CCCChhHHHHHHHHHHHhC-CCccCeEEEEEeccCCCCC
Q 021534 97 CIGMAKDGIHAVLLVFSIR---NRFSKEEGAAIHILESLFG-KKISDYMIVVFTGGDELED 153 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~---~~~~~~~~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~ 153 (311)
++......+|++|||+|++ ..+......+...+..... .....|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 2222233479999999998 3344333333333332110 1123599999999998866
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-17 Score=145.31 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML--------------------KA---GQVVNVIDT 77 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~l~liDT 77 (311)
++|+++|.||+|||||+|+|++... .....+++|.........+ .. ...+.||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~--~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 4799999999999999999999873 2223344454433332111 02 247999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN 116 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 116 (311)
||+...... .+.+...+..+++.+|++++|+|+++
T Consensus 79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 998652111 11122223345788999999999974
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=127.01 Aligned_cols=128 Identities=7% Similarity=0.081 Sum_probs=74.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+|+|.+|+|||||+|+|++......... ...|.. ..+ .+..+.+|||||..+..... ..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~-------~~ 110 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSA-----ADY-DGSGVTLVDFPGHVKLRYKL-------SD 110 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCH-------HH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCcee-----eee-cCCeEEEEECCCCchHHHHH-------HH
Confidence 35678999999999999999999998764221111 111111 112 46688999999987653221 12
Q ss_pred HHHhccCCccEEEEEEECC-CCCChhH-HHHHHHHHHHhC--CCccCeEEEEEeccCCCCCChhcHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIR-NRFSKEE-GAAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.+......+|++|||+|++ ++-+... ..++..+..... .....|+++|+||+|+... ..+.+
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~ 176 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSK 176 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHH
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHH
Confidence 2222235579999999997 3222111 122222222111 1123599999999998866 44443
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=149.34 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=97.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE----EEEee---CCceEEEEeCCCCCCCCCChHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ----RTMLK---AGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~----~~~~~---~~~~l~liDTPG~~~~~~~~~~ 89 (311)
....++|+++|.+|||||||+|++++...........+.+...... .+... .+..+.+|||||........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~-- 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH-- 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC--
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH--
Confidence 3456999999999999999999999876421111111221111100 11111 24689999999965533211
Q ss_pred HHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 90 VSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
..++..+|++|+|+|++ .. .....++..+....+ ..|+++|+||+|+........+.
T Consensus 116 ---------~~~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~--------- 172 (535)
T 3dpu_A 116 ---------QFFMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKK--------- 172 (535)
T ss_dssp ---------HHHHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHH---------
T ss_pred ---------HHHccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHH---------
Confidence 11244579999999997 33 334566777776543 26999999999987542112211
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+...+.+++. +||.++.|+++|+..|.+.+..
T Consensus 173 ~~~~~~~~~~~~~~------vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 173 INERFPAIENRFHR------ISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHHHCGGGTTCEEE------CCC-----CTTHHHHHHHHHTC
T ss_pred HHHHHHhcCCceEE------EecCcccCHHHHHHHHHHHHhc
Confidence 33444455666665 7889999999999999988754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=137.93 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=88.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...+..+|+++|.||+|||||+|+|+|... ...+.+++|.......+.+ .+.++.|+||||+.............+.
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l 144 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVI 144 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHH
Confidence 345668999999999999999999999875 3455678999998888888 8999999999999764322222333333
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC-ccCeEEEEEeccCCC
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK-ISDYMIVVFTGGDEL 151 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~ 151 (311)
.. .+.+|++++|+|+++++.. ...+..-....+.. ..+|.++++||+|..
T Consensus 145 ~~----i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AV----ARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HH----HHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HH----HHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 33 3456999999999865432 33333222223332 235889999999963
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=123.86 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=99.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|++|||||||+|.|+|.... ....+..+.......+.+ ++. .+.+|||||.......
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~--~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~---------- 94 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI---------- 94 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC--CSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh----------
Confidence 3589999999999999999999987642 122233444444555556 665 4557999997653221
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..++++++|+|+....+... ..++..+..... ...|+++++||+|+......... ....++.
T Consensus 95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~ 162 (191)
T 1oix_A 95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTD---------EARAFAE 162 (191)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHH---------HHHHHHH
Confidence 1223456789999999874332222 233444443322 23589999999997643111111 1234444
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.++.++++.|.+.+
T Consensus 163 ~~~~~~ld------~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 KNGLSFIE------TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 44443333 67788899999999987643
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=149.03 Aligned_cols=166 Identities=19% Similarity=0.216 Sum_probs=107.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcc------ccc--------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKA------FMS--------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~--------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
.....++|+++|++|+|||||+|+|++... +.. .....|.|.......+.. .+..+.||||||+.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH
Confidence 345669999999999999999999987410 000 001235555554444555 67899999999944
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~ 160 (311)
.+.......+..+|++|+|+|++++........+..+.. .+ .| +|+++||+|+..+. ..++.
T Consensus 371 -----------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lg----IP~IIVVINKiDLv~d~-e~le~ 433 (1289)
T 3avx_A 371 -----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VG----VPYIIVFLNKCDMVDDE-ELLEL 433 (1289)
T ss_dssp -----------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HT----CSCEEEEEECCTTCCCH-HHHHH
T ss_pred -----------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cC----CCeEEEEEeecccccch-hhHHH
Confidence 344555566889999999999987777777777766654 33 35 89999999987531 22222
Q ss_pred HhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhH--------HHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRT--------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~--------~~i~~l~~~i~~~~~ 210 (311)
...+ +..++...+ .++++ +||.++ .++.+|++.|...++
T Consensus 434 i~eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 434 VEME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcC
Confidence 2222 455555554 24444 555555 678999999887654
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-18 Score=158.92 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=88.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCCcceeEEEEEEEee
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK-----------------------------AGSSGVTKTCEMQRTMLK 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~ 67 (311)
....++|+++|++|+|||||+|+|++....... ....+.|.......+.+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 456789999999999999999999753210000 00246777777777777
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-----C--ChhHHHHHHHHHHHhCCCccCe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-----F--SKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
.+..+.||||||+.++.. .+...+..+|++|+|+|++++ + .......+..+.. .+. .+
T Consensus 253 ~~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SE 317 (592)
T ss_dssp ------CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CC
T ss_pred CCeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---Ce
Confidence 778999999999876321 122335678999999999853 3 4555666555554 332 24
Q ss_pred EEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH-HhcCC-----cEEEecCCchhhhhhHHHHH--------------H
Q 021534 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCDN-----RCVLFDNKTKDAAKRTEQVG--------------K 200 (311)
Q Consensus 141 ~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~f~~~~~~sa~~~~~i~--------------~ 200 (311)
+|+|+||+|+.......+...... +..++ ...+. .+++ +||.++.|+. .
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~ii~------iSA~~G~gI~e~~~~~~~~w~~g~~ 386 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHFVP------ISAISGTNLIQKDSSDLYKWYKGPT 386 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEEEE------ECSSSCSSSCSCCCCGGGGTCCSCC
T ss_pred EEEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEEEE------EecccCcccccccccccccccchHH
Confidence 999999999875322334433333 45555 44443 2343 6788888887 7
Q ss_pred HHHHHHHHHH
Q 021534 201 LLSLVNSVIV 210 (311)
Q Consensus 201 l~~~i~~~~~ 210 (311)
|++.|..+++
T Consensus 387 Lle~l~~~~p 396 (592)
T 3mca_A 387 LLSALDQLVP 396 (592)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHhhcc
Confidence 8888876543
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=144.56 Aligned_cols=137 Identities=22% Similarity=0.367 Sum_probs=82.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeE-EEEE--------------------------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTC-EMQR-------------------------------- 63 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~-~~~~-------------------------------- 63 (311)
....++|+|+|.+|+|||||+|+|+|........+....|... ....
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3467899999999999999999999987531111222222111 1100
Q ss_pred ----EEeeCC---ceEEEEeCCCCCCCCCChHHHHHH--HHHHHHhccCCccEEEEEEECCC-CCChhHHHHHHHHHHHh
Q 021534 64 ----TMLKAG---QVVNVIDTPGLFDSSADPEFVSKE--IVKCIGMAKDGIHAVLLVFSIRN-RFSKEEGAAIHILESLF 133 (311)
Q Consensus 64 ----~~~~~~---~~l~liDTPG~~~~~~~~~~~~~~--~~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~l~~l~~~~ 133 (311)
+.+ .+ ..+.||||||+.+... ..+... +...+..++..+|++|||+|+++ .+...+..++..+..
T Consensus 142 ~~~~~~~-~~~ll~~l~lIDTPG~~~~~~--~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 142 RFMCAQL-PNQVLESISIIDTPGILSGAK--QRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp TEEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred cceEEec-cccccCCEEEEECcCCCCcch--hHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 000 00 3689999999986311 011110 22233334556799999999985 356666666655543
Q ss_pred CCCccCeEEEEEeccCCCCCChhcHHHHhh
Q 021534 134 GKKISDYMIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 134 ~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
...|+++|+||+|++.. ..+.....
T Consensus 217 ---~~~pvilVlNK~Dl~~~--~el~~~~~ 241 (550)
T 2qpt_A 217 ---HEDKIRVVLNKADMVET--QQLMRVYG 241 (550)
T ss_dssp ---CGGGEEEEEECGGGSCH--HHHHHHHH
T ss_pred ---cCCCEEEEEECCCccCH--HHHHHHHH
Confidence 23589999999998865 55554444
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-16 Score=148.70 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=82.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccc-------cc---------CCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFM-------SK---------AGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~~---------~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
.+....++|+|+|++|+|||||+|+|+...... .+ ....+.|.......+.+ .+..++|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc
Confidence 344567999999999999999999998321100 00 00234566666666777 78899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.++. ... ..++..+|++|+|+|++++.+..+...+..+... ..|+++|+||+|....
T Consensus 86 G~~df~-------~~~----~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFT-------IEV----ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCH-------HHH----HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred CccchH-------HHH----HHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccC
Confidence 987631 222 2234457999999999977777777666665542 2589999999998754
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-16 Score=142.14 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=87.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc-cc------------------------cc----CCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA-FM------------------------SK----AGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~------------------------~~----~~~~~~T~~~~~~~~~~~~ 68 (311)
...++|+++|++++|||||+|+|++... +. .. ....+.|.......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 4568999999999999999999974221 00 00 00235677777667777 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCC-------hhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS-------KEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
+..+.||||||+.++ ...+...+..+|++|+|+|++++.. ......+..+.. .+. .++
T Consensus 120 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 889999999997653 2333445678999999999985531 234444444332 332 239
Q ss_pred EEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhc-CC------cEEEecCCchhhhhhHHHHHHH
Q 021534 142 IVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLC-DN------RCVLFDNKTKDAAKRTEQVGKL 201 (311)
Q Consensus 142 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~f~~~~~~sa~~~~~i~~l 201 (311)
++++||+|+... ....++....+ +..++... +. .+++ +||.++.|+.++
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~i~------vSA~~g~~i~~l 242 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKYMP------VSAYTGQNVKDR 242 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEEEE------CBTTTTBTTSSC
T ss_pred EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceEEe------cccccccccccc
Confidence 999999998642 11223332222 44555444 32 2333 677777777654
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=128.09 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=55.5
Q ss_pred CccEEEEEEECCCC--CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh-cCC
Q 021534 104 GIHAVLLVFSIRNR--FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL-CDN 179 (311)
Q Consensus 104 ~~d~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 179 (311)
++|++|+|+|++++ .+-.. ..++..+...... ...|+++|+||+|+... ..+++ ...+... .+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~~--~~v~~---------~~~~~~~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGVE--RYIRD---------AHTFALSKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBCH--HHHHH---------HHHHHHTSSSC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccccc--HHHHH---------HHHHHHhcCCC
Confidence 58999999999854 34333 3444444443111 12599999999997643 33321 2333333 244
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.++. +||.++.|++++++.|.+.+
T Consensus 230 ~~~e------~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 230 QVVE------TSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred eEEE------EECCCCCCHHHHHHHHHHHh
Confidence 5554 78899999999999988765
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=131.46 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|++|||||||+|+|++... .....+.+|.......+.+.....++++||||+.+.......+...+. .
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl----~ 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----R 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----H
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHH----H
Confidence 4589999999999999999999754 222334445555555566522378999999998652100000111111 1
Q ss_pred ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 101 AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
....++++++|+|++ .++... ....+.+..+...-..+|.++|+||+|.... ..+.. +...+...+.
T Consensus 232 ~~era~~lL~vvDls~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~---------l~~~l~~~g~ 299 (416)
T 1udx_A 232 HIARTRVLLYVLDAADEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGL 299 (416)
T ss_dssp HHTSSSEEEEEEETTSCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTS
T ss_pred HHHHHHhhhEEeCCccCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHH---------HHHHHHhcCC
Confidence 235679999999996 222211 1222333322110013589999999997643 22221 3334444455
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.++. +||.++.++++|++.|.+.+....
T Consensus 300 ~vi~------iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 300 AVLP------VSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CEEE------CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred eEEE------EECCCccCHHHHHHHHHHHHHhcc
Confidence 5655 788888999999999999886543
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=131.73 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=75.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||++.+.+... +......++|..+....+ .....+.||||||..+..... + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 589999999999999998886532 221222334444443333 134689999999977642110 0 12334
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+++++++|||+|+++++...-.++..++..........|++++.||+|+..+
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 7899999999999866333223332333322111123599999999998755
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=139.06 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=83.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc-cccc---------CC------CCCcceeEEEEEEEeeCC-------ceEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA-FMSK---------AG------SSGVTKTCEMQRTMLKAG-------QVVN 73 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~---------~~------~~~~T~~~~~~~~~~~~~-------~~l~ 73 (311)
....++|+|+|++|+|||||+++|+.... +... .. ..+.|.......+.+ .+ ..++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence 45678999999999999999999975321 1000 00 134566666666666 55 7899
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||||||+.++ ...+..++..+|++|+|+|+++.........+..+... ..|+++++||+|....
T Consensus 86 liDTPG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDF-----------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccch-----------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence 9999998763 22223345567999999999877766666666554431 2489999999997654
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=135.81 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=86.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc--------------------ccCCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM--------------------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~--------------------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
...+|+|+|+.++|||||..+|+...... ......|.|.......+.| ++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 46899999999999999999996322100 0011235677777778888 89999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.|+. .+.... ++-+|++|+|+|+..+.......+++...+. ..|.++++||+|....
T Consensus 109 GHvDF~-------~Ev~ra----L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS-------EDTYRV----LTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS-------HHHHHH----HHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCC
T ss_pred CcHHHH-------HHHHHH----HHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhc
Confidence 999974 334444 3456999999999989999998888877763 2489999999997644
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=126.68 Aligned_cols=108 Identities=17% Similarity=0.082 Sum_probs=66.9
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||+..+ ... ....+|++|+|+|.+...... .+.... ...|+++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~-------~~~-------~~~~aD~vl~V~d~~~~~~~~------~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-------EVA-------VANMVDTFVLLTLARTGDQLQ------GIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH-------HHH-------HHTTCSEEEEEEESSTTCTTT------TCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH-------HHH-------HHHhCCEEEEEECCCCCccHH------HHHHhH---hhcCCEEEEEC
Confidence 4678999999997641 011 136789999999986221111 111100 12489999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhc-------CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLC-------DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|.... ......... +...+... +.+++. +||.++.|+++|++.|.+.+..
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLT------MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEE------EBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEE------EEcCCCCCHHHHHHHHHHHHHH
Confidence 997644 333332222 33333222 334554 7899999999999999988754
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-15 Score=136.28 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccc--------------------CCCCCcceeEEEEEEEeeCCceEEEEeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSK--------------------AGSSGVTKTCEMQRTMLKAGQVVNVIDT 77 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~--------------------~~~~~~T~~~~~~~~~~~~~~~l~liDT 77 (311)
...++|+++|++|+|||||+|+|++....... ....+.|.......+.+ .+..++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 35689999999999999999999864211000 00123444444455666 7889999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||+.++. ..+..++..+|++|+|+|++++.......++..+.. ...|+++++||+|+...
T Consensus 90 PG~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCS
T ss_pred CCChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCccc
Confidence 9987743 112334667899999999987776666555544432 23589999999998755
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-15 Score=142.20 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc--c--------CC------CCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS--K--------AG------SSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--~--------~~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+|+|++|+|||||+|+|++...... + .. ..+.|.......+.+ .+..++||||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence 45679999999999999999999984211000 0 00 134555555566777 7889999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++. ..... ++..+|++|+|+|++++.+..+...+..+... ..|+++|+||+|+...
T Consensus 86 ~df~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFT-------VEVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCC-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred cchH-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCcccc
Confidence 8743 11222 23457999999999878887777777766542 2589999999998754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=124.53 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=83.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CCcceeEEEEEEEee-C--CceEEEEeCCCCCCCCCC---
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----SGVTKTCEMQRTMLK-A--GQVVNVIDTPGLFDSSAD--- 86 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----~~~T~~~~~~~~~~~-~--~~~l~liDTPG~~~~~~~--- 86 (311)
.-.++|+|+|++|+|||||+|.|+|...++....+ ...|.......+... . ...+++|||||+++....
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999999987443332110 011222222222221 1 237899999999543110
Q ss_pred hHHHHHHHH----HHHHh---------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 87 PEFVSKEIV----KCIGM---------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 87 ~~~~~~~~~----~~~~~---------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
...+...+. ..+.. ....+++++|+++.+ +.+...+..+ ++.+.. ..|+++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~---l~~l~~---~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAF---MKAIHN---KVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHH---HHHHTT---TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHH---HHHHHh---cCCEEEEEEeCCCCC
Confidence 011222111 11111 112356788887754 3577766443 444322 248999999999876
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
. ..+..+... +...+...+..++. +||.++ ++++++..+.+.+.
T Consensus 170 ~--~e~~~~~~~-----~~~~~~~~~~~~~e------~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 L--KERERLKKR-----ILDEIEEHNIKIYH------LPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp H--HHHHHHHHH-----HHHHHHHTTCCCCC------CC----------CHHHHHHHH
T ss_pred H--HHHHHHHHH-----HHHHHHHcCCeEEe------cCCccc-cccHHHHHHHHHhh
Confidence 5 444333332 45566666665554 677788 89998888776654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=139.06 Aligned_cols=116 Identities=26% Similarity=0.251 Sum_probs=83.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc--ccC--------C------CCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM--SKA--------G------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~--~~~--------~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
...+|+++|++|+|||||+++|++..... .+. . ..+.|.......+.+ .+..++||||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccc
Confidence 45899999999999999999998432210 000 0 124555666666666 788999999999775
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+ ...+..++..+|++++|+|+++++......++..+... + .|+++++||+|..
T Consensus 87 f-----------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-----------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp G-----------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred h-----------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 3 12222334457999999999878887777777766652 2 4899999999987
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-14 Score=124.97 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||+.+. . ..+ ...+|++++|+|++.+.. ...+. ..++ ..|.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~----~~l-------~~~~d~vl~V~d~~~~~~---~~~i~--~~il----~~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---E----FAV-------ADMVDMFVLLLPPAGGDE---LQGIK--RGII----EMADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---H----HHH-------HTTCSEEEEEECCC-----------------C----CSCSEEEECC
T ss_pred CCCCEEEEECCCcchh---h----hhH-------HhhCCEEEEEEcCCcchh---HHHhH--HHHH----hcCCEEEEee
Confidence 5668899999998642 1 111 346899999999874321 11111 0112 2378999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHh-------cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQL-------CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|+... ......+.. +...+.. +..++++ +|+.++.|+++|+++|.+.+..
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~------iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIR------ISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 997643 221111111 1111111 1223333 7889999999999999987743
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-11 Score=112.89 Aligned_cols=108 Identities=21% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCC-ChHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTML--KAGQVVNVIDTPGLFDSSA-DPEFVSKE 93 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~--~~~~~l~liDTPG~~~~~~-~~~~~~~~ 93 (311)
.+..+|+|+|.||+|||||+|+|+|... +..+..+.++|..+..+.... ..+..+.||||||+.+... ....-...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 4558899999999999999999999874 223333335555554332221 1567899999999997543 22211121
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILES 131 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~ 131 (311)
+.-.+..+ + ++|+|+...++..+...+..+.+
T Consensus 116 fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 116 FALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 21111111 2 45566556788888777666554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-13 Score=119.08 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||+.++. .. + ...+|++++|+|++.... ...+.. ... ..|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~~-------~~----~---~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~----~~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------TE----V---ARMVDCFISLQIAGGGDD---LQGIKK--GLM----EVADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------HH----H---HTTCSEEEEEECC---------CCCCH--HHH----HHCSEEEECC
T ss_pred cCCCEEEEeCCCccchH-------HH----H---HHhCCEEEEEEeCCccHH---HHHHHH--hhh----cccCEEEEEC
Confidence 56789999999987521 11 1 367899999999863211 001100 001 1378999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcC-------CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCD-------NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+|.... ......+.. +...+...+ ..+++ +|+.++.|+++|++.|...+.
T Consensus 204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLT------CSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEE------CBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 997643 233322222 233222222 23333 788899999999999988764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=119.60 Aligned_cols=153 Identities=19% Similarity=0.233 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCCh---H
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----SGVTKTCEMQRTMLKA---GQVVNVIDTPGLFDSSADP---E 88 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----~~~T~~~~~~~~~~~~---~~~l~liDTPG~~~~~~~~---~ 88 (311)
.++|+|+|++|+|||||+|.|+|......+... ...+.......+.... ...++++|+||+++..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 378999999999999999999986543222110 0111111111111101 1378999999998643211 1
Q ss_pred HHHHH----HHHHHHh----------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 89 FVSKE----IVKCIGM----------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 89 ~~~~~----~~~~~~~----------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+... +...... .+..+++++|++|.. +++...+..++..+.+. .++++|+||+|.+..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 22222 2222211 123469999999864 78999998887777653 489999999999977
Q ss_pred ChhcHHHHhhhcCCchHHHHHHhcCCcEEEec
Q 021534 154 NDETLEDYLGRECPKPLKEILQLCDNRCVLFD 185 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 185 (311)
..+..++.. +...+...+..++.|.
T Consensus 156 --~e~~~~k~~-----i~~~l~~~~i~i~~~~ 180 (270)
T 3sop_A 156 --EEKSEFKQR-----VRKELEVNGIEFYPQK 180 (270)
T ss_dssp --HHHHHHHHH-----HHHHHHHTTCCCSSCS
T ss_pred --HHHHHHHHH-----HHHHHHHcCccccCCC
Confidence 666666655 6666777777766654
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-15 Score=139.38 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccc----------CCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSK----------AGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----------~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
..||+|+||.++|||||..+|+........ ..+ .|.|.......+.| ++..++||||||+.|+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 478999999999999999998632211000 000 25677777777888 8999999999999995
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
. .+.. .+++-+|++|+|+|+..+........++.+.+.. .|.++++||+|....
T Consensus 81 ~-------~Ev~----raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~~a 134 (638)
T 3j25_A 81 L-------AEVY----RSLSVLDGAILLISAKDGVQAQTRILFHALRKMG-----IPTIFFINKIDQNGI 134 (638)
T ss_dssp H-------HHHH----HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT-----CSCEECCEECCSSSC
T ss_pred H-------HHHH----HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC-----CCeEEEEeccccccC
Confidence 2 3333 3355679999999999889888888888777643 378999999997644
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-14 Score=122.92 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC-----------------ceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG-----------------QVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~l~liDTPG~~~~ 83 (311)
++|+++|.||+|||||+|+|++... .....+++|.......+.+ .+ ..+.||||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 6899999999999999999998763 2223345555554444444 33 47999999998753
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCC
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN 116 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 116 (311)
... .+.+...+...++.+|++++|+|+++
T Consensus 80 a~~----~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASK----GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHH----HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccc----cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 100 01111111123567899999999873
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=119.61 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--------------------CCceEEEEeCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--------------------AGQVVNVIDTPGL 80 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--------------------~~~~l~liDTPG~ 80 (311)
++|+++|.||+|||||+|+|++... .....+++|.........+. .+..+.||||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999998642 11222333433322222221 2357999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN 116 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 116 (311)
.........+...+.. .++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~----~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLA----HIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHH----HHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHH----HHHhCCEEEEEEECCC
Confidence 7643222222222222 2457799999999873
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-14 Score=136.03 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=79.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccC--------------CCCCcceeEEEEEEEee---------------C
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKA--------------GSSGVTKTCEMQRTMLK---------------A 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------~ 68 (311)
...++|+|+|++|+|||||+|+|++........ ...+.|.......+.|. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356899999999999999999998753211100 01233444444444442 1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..++||||||+.++. .. +..+++.+|++|+|+|++++.+..+...+..+.. ...|+++++||+
T Consensus 97 ~~~i~liDTPG~~df~-------~~----~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFS-------SE----VTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-----ERIKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSC-------HH----HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCEEEEEEECH
T ss_pred CceEEEEECcCchhhH-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCeEEEEECC
Confidence 5689999999998853 11 2233567799999999997877777665554443 124899999999
Q ss_pred CCC
Q 021534 149 DEL 151 (311)
Q Consensus 149 D~~ 151 (311)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 976
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=125.42 Aligned_cols=122 Identities=23% Similarity=0.261 Sum_probs=85.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCCcceeEEEEEEEee------CCceEE
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS----------------KAGSSGVTKTCEMQRTMLK------AGQVVN 73 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----------------~~~~~~~T~~~~~~~~~~~------~~~~l~ 73 (311)
|-+...||+|+||.++|||||..+|+....... .....|.|.......+.|. ++..++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 445678999999999999999999864321100 0111356666666667663 146899
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||||||+.|+. .+....+.. +|++|+|+|+..+.......+++...+.. .|.++++||+|....
T Consensus 89 lIDTPGHvDF~-------~Ev~~aLr~----~DgavlvVDaveGV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 89 VIDTPGHVDFT-------IEVERSLRV----LDGAVVVFCGTSGVEPQSETVWRQANKYG-----VPRIVYVNKMDRQGA 152 (709)
T ss_dssp EECCCSCTTCH-------HHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHHT-----CCEEEEEECSSSTTC
T ss_pred EEeCCCCcccH-------HHHHHHHHH----hCeEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEccccccCc
Confidence 99999999963 344444443 49999999999899999888888776642 489999999997644
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=109.78 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=96.6
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHh-----CCccccccCCCCCcce----------eEEEEEE-------------
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSIL-----GKKAFMSKAGSSGVTK----------TCEMQRT------------- 64 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~-----g~~~~~~~~~~~~~T~----------~~~~~~~------------- 64 (311)
++........+++.|.+|+||||+++.|. |..+......+..... .......
T Consensus 7 ~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1yrb_A 7 HHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVE 86 (262)
T ss_dssp CCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHH
T ss_pred cccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEe
Confidence 34444556889999999999999999998 6654333222211000 0000000
Q ss_pred -----------------EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHH-HH
Q 021534 65 -----------------MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGA-AI 126 (311)
Q Consensus 65 -----------------~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-~l 126 (311)
.+..+..+.||||||..+. .....+...+...+.. +++++++|+.......+.. ..
T Consensus 87 ~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~ 160 (262)
T 1yrb_A 87 SYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVR 160 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHH
T ss_pred cHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHH
Confidence 0001237899999996531 0011111112223455 8999999986344443322 11
Q ss_pred HHHHHHhCCCccCeEEEEEeccCCCCCChhcH---HHHhhhcCCchHH-H-----------------HHHhcCC--cEEE
Q 021534 127 HILESLFGKKISDYMIVVFTGGDELEDNDETL---EDYLGRECPKPLK-E-----------------ILQLCDN--RCVL 183 (311)
Q Consensus 127 ~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~---~~~~~~~~~~~~~-~-----------------~~~~~~~--~~~~ 183 (311)
........ ....|+++|+||+|.... ..+ .+++.. .. .+. . .+...+. .+++
T Consensus 161 ~~~~~~~~-~~~~p~~iv~NK~D~~~~--~~~~~~~~~l~~-~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (262)
T 1yrb_A 161 FFALLIDL-RLGATTIPALNKVDLLSE--EEKERHRKYFED-ID-YLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLY 235 (262)
T ss_dssp HHHHHHHH-HHTSCEEEEECCGGGCCH--HHHHHHHHHHHC-HH-HHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred HHHHHHhc-ccCCCeEEEEeccccccc--ccHHHHHHHHhC-hH-HHHHHHhccccccchhHhHHHHHHHHhcCcccceE
Confidence 11111010 112489999999998754 222 222211 00 000 1 1222222 3444
Q ss_pred ecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 184 FDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 184 f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|+.++.|+++|+++|.+.+..
T Consensus 236 ------~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 236 ------LSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp ------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------EEecCcccHHHHHHHHHHHhcc
Confidence 7888999999999999988754
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-14 Score=125.43 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=74.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc-----ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA-----FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~-----~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
..+|+++|.||+|||||+|+|+|... .......+++|.......+ +..+.++||||+.+.....+.+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL----DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES----SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe----cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 36899999999999999999998632 1122345667766655432 23489999999988653333333322
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+ .....++.++|+++.+..+.......+..+. + ...|+++++||.|.+..
T Consensus 236 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 236 LKLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVS---G--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEEE
T ss_pred HHHh-ccccccCceEEEEcCCCEEEEcceEEEEEec---C--CCceEEEEecCcccccc
Confidence 2222 1245689999999985221111211122222 1 23589999999998865
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-14 Score=126.36 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=77.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC-----ccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK-----KAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~-----~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
..+|+++|.||+|||||+|+|++. ... .....+++|....... -+..+.++||||+.+.......+....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-~~~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVI-TTSYFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCC-EEEECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccce-eecCCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 368999999999999999999986 221 2234566777665543 234589999999987643233232222
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+ .....+|+++|+++.+..+.......+..+. + ...|+++++||.|.+..
T Consensus 237 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIK---G--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEEE
T ss_pred HHHH-hcccccCceEEEEcCCceEEECCEEEEEEcc---C--CCceEEEEecCCccccc
Confidence 2222 1125689999999985221111211122222 1 23489999999998755
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=106.57 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=53.1
Q ss_pred ceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC--------ChhHHHHHH
Q 021534 56 TKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF--------SKEEGAAIH 127 (311)
Q Consensus 56 T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~--------~~~~~~~l~ 127 (311)
|..+....+.+ ++..+.||||||- +.+...+..++.++++||||+|+++.- ...-...+.
T Consensus 188 T~Gi~~~~~~~-~~~~l~i~Dt~Gq-----------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~ 255 (362)
T 1zcb_A 188 TKGIHEYDFEI-KNVPFKMVDVGGQ-----------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255 (362)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH
T ss_pred ccceEEEEeee-CCeEEEEEeccch-----------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH
Confidence 44455555666 6789999999994 336666778899999999999998410 111123344
Q ss_pred HHHHHhCCC--ccCeEEEEEeccCCC
Q 021534 128 ILESLFGKK--ISDYMIVVFTGGDEL 151 (311)
Q Consensus 128 ~l~~~~~~~--~~~~~ilv~nk~D~~ 151 (311)
++...+... ...|+|+++||+|+.
T Consensus 256 ~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 256 IFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHhcchhhCCCCEEEEEEChhhh
Confidence 444444321 235999999999975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=107.09 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=60.8
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHH-HHHHHHhCCCccCeEEEEEe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAI-HILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ilv~n 146 (311)
.+..+.||||||+..+. . .+ ...+|++++|+|++... +...+ ..+.+ .+.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~~---~----~v-------~~~~d~vl~v~d~~~~~---~~~~i~~~i~~-------~~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---T----AV-------ADLTDFFLVLMLPGAGD---ELQGIKKGIFE-------LADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSCH---H----HH-------HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEE
T ss_pred CCCCEEEEECCCCCcch---h----hH-------HhhCCEEEEEEcCCCcc---cHHHHHHHHhc-------cccEEEEE
Confidence 46789999999987631 1 11 25679999999976221 11100 01111 25677889
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhc-------CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLC-------DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
|+|+.... ......... +...+... ..++++ +|+.++.|+++|++.|.++..
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~------~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVVT------ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 99976431 111111111 22222111 223343 788899999999999998764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-12 Score=104.49 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=84.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-----ccccCCCCCcce--------eEEEEEE------------------Eee
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-----FMSKAGSSGVTK--------TCEMQRT------------------MLK 67 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-----~~~~~~~~~~T~--------~~~~~~~------------------~~~ 67 (311)
..++|+|+|.+|+|||||+|+|++... ...... ++.+. ......+ .+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD-VVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF- 106 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS-CCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC-CCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc-
Confidence 457999999999999999999986521 000011 11110 0000000 11
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.+|||||..+.. . .+....+++++|+|+..... ... .... ..+ .|+++|+||
T Consensus 107 ~~~d~iiidt~G~~~~~---~-----------~~~~~~~~~i~vvd~~~~~~-~~~---~~~~-~~~----~~~iiv~NK 163 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICP---V-----------DFDLGENYRVVMVSVTEGDD-VVE---KHPE-IFR----VADLIVINK 163 (221)
T ss_dssp TTCSEEEEEEEEBSSGG---G-----------GCCCSCSEEEEEEEGGGCTT-HHH---HCHH-HHH----TCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCCC---c-----------hhccccCcEEEEEeCCCcch-hhh---hhhh-hhh----cCCEEEEec
Confidence 34578899999852210 0 01124688999999874321 111 1111 121 489999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+|+.........+. ...+...+ .+++. +|+.++.|+.+++++|.+.+.
T Consensus 164 ~Dl~~~~~~~~~~~---------~~~~~~~~~~~~i~~------~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 164 VALAEAVGADVEKM---------KADAKLINPRAKIIE------MDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp GGGHHHHTCCHHHH---------HHHHHHHCTTSEEEE------CBTTTTBTHHHHHHHHHHHHC
T ss_pred ccCCcchhhHHHHH---------HHHHHHhCCCCeEEE------eecCCCCCHHHHHHHHHHHHH
Confidence 99753210122222 22222222 34444 688889999999999987764
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=111.01 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=94.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh------CCccccccCCCCCcce-----------eEEEEE-----------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGSSGVTK-----------TCEMQR----------------- 63 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~~~~T~-----------~~~~~~----------------- 63 (311)
.....|+|+|.+|+||||+++.|+ |..+......+..... .+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 7654322221100000 011111
Q ss_pred EEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE-E
Q 021534 64 TMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM-I 142 (311)
Q Consensus 64 ~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-i 142 (311)
+.+ .+..+.||||||.... ...+..++...... ..+|.+++|+|+..... .......+.+. .|+ +
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~g 244 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVAS 244 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCC
T ss_pred HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceE
Confidence 011 4568999999998752 23344444433221 26799999999984432 33334444432 254 8
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE------------EEecCCchhhhhhHHH-HHHHHHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC------------VLFDNKTKDAAKRTEQ-VGKLLSLVNSV 208 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~f~~~~~~sa~~~~~-i~~l~~~i~~~ 208 (311)
+|+||+|.....+..+. +....+.++ ..|......|+..+.+ +..|++++.+.
T Consensus 245 vVlNK~D~~~~~g~~l~-------------~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 245 VIVTKLDGHAKGGGALS-------------AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEEECTTSCCCCTHHHH-------------HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEEeCCccccchHHHHH-------------HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99999997744222222 112223332 2333334567777778 89999988765
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=6.7e-11 Score=104.33 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=82.1
Q ss_pred ceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC--------ChhHHHHHH
Q 021534 56 TKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF--------SKEEGAAIH 127 (311)
Q Consensus 56 T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~--------~~~~~~~l~ 127 (311)
|+.+....+.+ ++..+.+|||+|-. .+...+..++.++|+||||+|+++.- ...-...+.
T Consensus 180 T~Gi~~~~~~~-~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~ 247 (353)
T 1cip_A 180 TTGIVETHFTF-KDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 247 (353)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred eeceEEEEEee-CCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH
Confidence 55555666666 78899999999943 35566778899999999999998421 111233445
Q ss_pred HHHHHhCCC--ccCeEEEEEeccCCCCCC--hhcHHHHhhhc----CCchHHHHHH----hc-----CCcEEEecCCchh
Q 021534 128 ILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDYLGRE----CPKPLKEILQ----LC-----DNRCVLFDNKTKD 190 (311)
Q Consensus 128 ~l~~~~~~~--~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~----~~~~~~~~~~----~~-----~~~~~~f~~~~~~ 190 (311)
++...+... ...|++|++||+|+.... ...+..+...+ .......++. .. ...++++ .+
T Consensus 248 ~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----et 323 (353)
T 1cip_A 248 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FT 323 (353)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----EC
T ss_pred HHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EE
Confidence 555555421 235999999999975220 00111110000 0001122222 11 1222222 26
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 021534 191 AAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 191 sa~~~~~i~~l~~~i~~~~~~ 211 (311)
||.++.|+.+++.++.+.+..
T Consensus 324 SA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 324 CATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred ECcCchhHHHHHHHHHHHHHH
Confidence 888899999999999876643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=110.46 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC----------------CceEEEEeCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA----------------GQVVNVIDTPG 79 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~----------------~~~l~liDTPG 79 (311)
......+|+++|.||+|||||+|+|+|... .....+++|.......+.+.+ ...+.+|||||
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 344568999999999999999999999865 223345566655555554411 23599999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
+......... +...+..+++.+|++++|+|++
T Consensus 96 l~~~as~~~g----lg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 96 LVKGAHNGQG----LGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp ---------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred cccccchhhH----HHHHHHHHHHhcCeEEEEEecC
Confidence 8763211111 2112233456789999999986
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-10 Score=98.74 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=84.4
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC-------CCCChh-HHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR-------NRFSKE-EGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~-------~~~~~~-~~~~l 126 (311)
.|..+....+.. .+..+.+|||+| ++.++..+..++.+++++|||+|++ +.-..+ -...+
T Consensus 153 ~TiGi~~~~~~~-~~v~l~iwDtgG-----------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~ 220 (327)
T 3ohm_A 153 PTTGIIEYPFDL-QSVIFRMVDVGG-----------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK 220 (327)
T ss_dssp CCCSEEEEEEEE-TTEEEEEEEECC-----------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH
T ss_pred ceeeEEEEEEEe-eceeeEEEEcCC-----------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH
Confidence 455566666777 788999999999 3557778888999999999999765 111111 12344
Q ss_pred HHHHHHhCCC--ccCeEEEEEeccCCCCCC--hhcHHHHhhhcCC--chH---HHH----HHh---c-CCcEEEecCCch
Q 021534 127 HILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDYLGRECP--KPL---KEI----LQL---C-DNRCVLFDNKTK 189 (311)
Q Consensus 127 ~~l~~~~~~~--~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~~~--~~~---~~~----~~~---~-~~~~~~f~~~~~ 189 (311)
.++...+... ...|+++++||+|+.... ...+..+...+.. ... ... +.. . ...++++.
T Consensus 221 ~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~---- 296 (327)
T 3ohm_A 221 ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF---- 296 (327)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEE----
T ss_pred HHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEE----
Confidence 5555555432 235999999999976320 0112222221110 011 111 111 1 12222222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 021534 190 DAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 190 ~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+||.+..+++.++..+.+.+-.
T Consensus 297 TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 297 TCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCHHHHHHHHHHHHHHHH
Confidence 5777889999999999877644
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=110.20 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=46.3
Q ss_pred ceEEEEeCCCCCCC--CCChHHHHHHHHHHHHhccCCc-cEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 70 QVVNVIDTPGLFDS--SADPEFVSKEIVKCIGMAKDGI-HAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 ~~l~liDTPG~~~~--~~~~~~~~~~~~~~~~~~~~~~-d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.|+|.||+... ..-+......+...+..+.... ..++.+++.+..+. ....+..+...... ..++|+|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~~--g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDPE--GDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCSS--CCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhhc--CCceEEEec
Confidence 46899999998763 3333444555666666655444 45555556542322 22345555554322 348999999
Q ss_pred ccCCCCC
Q 021534 147 GGDELED 153 (311)
Q Consensus 147 k~D~~~~ 153 (311)
|+|.+..
T Consensus 223 K~Dlv~~ 229 (608)
T 3szr_A 223 KPDLVDK 229 (608)
T ss_dssp CGGGSSS
T ss_pred chhhcCc
Confidence 9999865
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=99.05 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=59.0
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC-------C-CChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN-------R-FSKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~-------~-~~~~~~~~l 126 (311)
.|..+....+.+ .+..+.||||+| ++.++..+..++.+++++|||+|+++ . -...-...+
T Consensus 147 ~TiGi~~~~~~~-~~v~l~iwDtaG-----------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~ 214 (340)
T 4fid_A 147 KTTGIHEYDFVV-KDIPFHLIDVGG-----------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI 214 (340)
T ss_dssp CCCSCEEEEEES-SSCEEEEEECCS-----------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH
T ss_pred ceeeeEEEEEEe-eeeeeccccCCC-----------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHH
Confidence 355556666666 788999999999 35678888899999999999999871 0 111112334
Q ss_pred HHHHHHhCCC--ccCeEEEEEeccCCCC
Q 021534 127 HILESLFGKK--ISDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~--~~~~~ilv~nk~D~~~ 152 (311)
.++...+... ...|+++++||+|+..
T Consensus 215 ~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 215 AVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred HHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 4444444321 2359999999999763
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-10 Score=99.17 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=47.2
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC-------C-CChhHHHHHHHHHHHhCCC--ccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN-------R-FSKEEGAAIHILESLFGKK--ISD 139 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~--~~~ 139 (311)
..+.||||+|-.. +...+..++++++++|||+|++. . -...-.....++...+... ...
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 5799999999543 55566778999999999999861 1 1111123344444444321 235
Q ss_pred eEEEEEeccCCC
Q 021534 140 YMIVVFTGGDEL 151 (311)
Q Consensus 140 ~~ilv~nk~D~~ 151 (311)
|+++|+||+|+.
T Consensus 252 piiLvgNK~DL~ 263 (354)
T 2xtz_A 252 SFMLFLNKFDIF 263 (354)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECcchh
Confidence 999999999975
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-10 Score=99.40 Aligned_cols=168 Identities=19% Similarity=0.136 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
...|+|+|++|||||||+|.|+|......+....+ .|.. .+.+.......++++|+||++.....-.++.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~---- 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLE---- 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHH----
Confidence 46899999999999999999999543222222111 1111 11111112236899999998753222222222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC--CC-----ChhcHHHHhhhcCCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL--ED-----NDETLEDYLGRECPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~--~~-----~~~~~~~~~~~~~~~~ 169 (311)
.+. +...+.+++ ++.+ +.......+...+.. .+ .|+++|+||.|.+ ++ +..........
T Consensus 143 ~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~----~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~----- 208 (413)
T 1tq4_A 143 KMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MK----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD----- 208 (413)
T ss_dssp HTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TT----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----
T ss_pred HcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cC----CCeEEEEecCcccccCcccccCCHHHHHHHHHH-----
Confidence 111 223355555 7776 455666666666654 22 5999999999965 10 00122222221
Q ss_pred HHHHH----HhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEIL----QLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~----~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..+. ...+ ..+++++++. ..+.++++|.+.|.+.+++
T Consensus 209 l~~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 209 IRLNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCcc
Confidence 33332 1222 3456644432 2335799999999988865
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.13 E-value=9e-11 Score=100.53 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~ 89 (311)
+..++|+++|.||+|||||+|+|+|.....++ ..+++|...+... .+..+.||||||+.++.....+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVK----VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEE----eCCCEEEEECcCcCCCCCCCHH
Confidence 35589999999999999999999998754333 3456676664322 2557999999999987655443
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=102.92 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC-----------------ceEEEEe
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG-----------------QVVNVID 76 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~l~liD 76 (311)
........+|+++|++|+|||||+|+|+|...... ...+++|.......+.+ .+ ..+.+||
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence 33445568999999999999999999999764122 23455666665555555 43 3589999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 77 TPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 77 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
|||+.......+.+...+. ..+..+|++++|+|+.
T Consensus 92 ~pGl~~~~s~~e~L~~~fl----~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFL----SHVRAVDAIYQVVRAF 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHH----HHHTTCSEEEEEEECC
T ss_pred ccccccCCcHHHHHHHHHH----HHHHHHHHHHHHHhcc
Confidence 9998764322222222232 2345789999999986
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=95.58 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=56.8
Q ss_pred ceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---C-----ChhHHHHHH
Q 021534 56 TKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---F-----SKEEGAAIH 127 (311)
Q Consensus 56 T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~-----~~~~~~~l~ 127 (311)
|+.+....+.+ ++..+.||||+|-. .+...+..++.+++++|||+|+++- + ...-.....
T Consensus 204 TiGi~~~~~~~-~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~ 271 (402)
T 1azs_C 204 TSGIFETKFQV-DKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN 271 (402)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH
T ss_pred eeeeEEEEeec-CCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH
Confidence 44455555666 67899999999943 3556677889999999999999840 0 111123444
Q ss_pred HHHHHhCCC--ccCeEEEEEeccCCC
Q 021534 128 ILESLFGKK--ISDYMIVVFTGGDEL 151 (311)
Q Consensus 128 ~l~~~~~~~--~~~~~ilv~nk~D~~ 151 (311)
++..++... ...|++||+||+|+.
T Consensus 272 ~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 272 LFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHHHhcccCCCCeEEEEEEChhhh
Confidence 555544321 235899999999975
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-10 Score=93.20 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..++|+|+|.+|+|||||+++|++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999865
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.4e-10 Score=94.20 Aligned_cols=63 Identities=27% Similarity=0.443 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC-ChH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA-DPE 88 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~-~~~ 88 (311)
.+|+++|.||+|||||+|+|+|.....++ ..+++|...+... .+..+.||||||+.+... .+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~ 163 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFS----LENGVKILDTPGILYKNIFSED 163 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE----CTTSCEEESSCEECCCCCCSHH
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEE----eCCCEEEEECCCcccCcCCCCh
Confidence 69999999999999999999998754332 3346666543222 356789999999998765 443
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-08 Score=87.42 Aligned_cols=122 Identities=18% Similarity=0.150 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCccccccCCCC--C---------cceeEEEEEE-----------------
Q 021534 19 GERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGSS--G---------VTKTCEMQRT----------------- 64 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~~--~---------~T~~~~~~~~----------------- 64 (311)
+...|+++|.+|+||||+++.|. |..+......+. + ....+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987 444321111110 0 0000001100
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
.. .+..+.||||||.... +.....++..... ...+|.+++|+|+... .........+.+.. ....+|
T Consensus 179 ~~-~~~DvVIIDTaGrl~~---d~~lm~el~~i~~--~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVI 245 (443)
T 3dm5_A 179 KS-KGVDIIIVDTAGRHKE---DKALIEEMKQISN--VIHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSII 245 (443)
T ss_dssp HH-TTCSEEEEECCCCSSC---CHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEE
T ss_pred Hh-CCCCEEEEECCCcccc---hHHHHHHHHHHHH--hhcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEE
Confidence 00 3467999999997652 3344444544332 2257999999998732 22333334444322 357899
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|....
T Consensus 246 lTKlD~~~~ 254 (443)
T 3dm5_A 246 VTKLDGSAK 254 (443)
T ss_dssp EECCSSCSS
T ss_pred EECCCCccc
Confidence 999997754
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=90.93 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC-----------------ccccccCCCCCcceeEEEEEE----EeeC--CceEEE
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK-----------------KAFMSKAGSSGVTKTCEMQRT----MLKA--GQVVNV 74 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~-----------------~~~~~~~~~~~~T~~~~~~~~----~~~~--~~~l~l 74 (311)
.+...|+|+|++++|||||+|.|+|. ..|..+.....+|..+-.... .... +..+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 35578999999999999999999964 233332222334443322210 1101 247999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHH
Q 021534 75 IDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILES 131 (311)
Q Consensus 75 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~ 131 (311)
+||||+++... +......+.... .--++++||-+. ..+...+...|..+.+
T Consensus 145 lDTeG~~~~~~-~~~~d~~ifal~---~lLSs~~IyN~~--~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 145 MDTQGTFDSQS-TLRDSATVFALS---TMISSIQVYNLS--QNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEECCCSSHH-HHHHHHHHHHHH---HHHCSEEEEEES--SSCCHHHHHHHHHHHH
T ss_pred EcCCccccccc-chhhhHHHHHHH---HHHhhHHHHhhc--ccccHHHHHHHHHHHH
Confidence 99999987532 111112222211 111356666553 3566667666666554
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-08 Score=89.84 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCC----------------------CC-cceeE-EE--EEE-Ee
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK------KAFMSKAGS----------------------SG-VTKTC-EM--QRT-ML 66 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~----------------------~~-~T~~~-~~--~~~-~~ 66 (311)
...|+++|++|+||||+++.|.+. .+......+ .+ .+... .. ..+ .+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999763 111110000 00 11110 00 000 12
Q ss_pred eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCcc-CeEEEEE
Q 021534 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS-DYMIVVF 145 (311)
Q Consensus 67 ~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ilv~ 145 (311)
.+..+.||||||.... +..+...+... .....+|.++||+|+.... .. +..+.. +.. .. ....+|+
T Consensus 179 -~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~~---~~~~~~-~~~-~~~~i~gvVl 245 (432)
T 2v3c_C 179 -KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--QA---GIQAKA-FKE-AVGEIGSIIV 245 (432)
T ss_dssp -SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--GH---HHHHHH-HHT-TSCSCEEEEE
T ss_pred -hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--HH---HHHHHH-Hhh-cccCCeEEEE
Confidence 4567899999997642 33344444321 2234689999999987332 22 222322 221 11 2489999
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||+|....
T Consensus 246 nK~D~~~~ 253 (432)
T 2v3c_C 246 TKLDGSAK 253 (432)
T ss_dssp ECSSSCST
T ss_pred eCCCCccc
Confidence 99997643
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-07 Score=83.37 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=70.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCccccccCCC---------------CCcceeEE-------------EEEE
Q 021534 19 GERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGS---------------SGVTKTCE-------------MQRT 64 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~---------------~~~T~~~~-------------~~~~ 64 (311)
+...|+++|++|+||||+++.|. |..+....... .+...... ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999987 43331111000 00000000 0000
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
.. .+..+.||||||..... .+.....++....... .+|.+++|+|+... .........+.+.. .+..+|
T Consensus 176 ~~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVI 244 (433)
T 3kl4_A 176 VK-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVI 244 (433)
T ss_dssp TT-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEE
T ss_pred Hh-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEE
Confidence 01 35678999999965410 2233444454433322 46899999998732 22334445555443 358899
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|....
T Consensus 245 lTKlD~~a~ 253 (433)
T 3kl4_A 245 ITKMDGTAK 253 (433)
T ss_dssp EECGGGCSC
T ss_pred Eeccccccc
Confidence 999997644
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-06 Score=72.12 Aligned_cols=127 Identities=16% Similarity=0.148 Sum_probs=66.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCC--Cc---------ceeEEEEEEE----------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA------FMSKAGSS--GV---------TKTCEMQRTM---------------- 65 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~~~~~~--~~---------T~~~~~~~~~---------------- 65 (311)
+.-.|+++|++||||||+++.|.|... ...+.... +. ...+.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999975321 11111000 00 0001110000
Q ss_pred eeCCceEEEEeCCCCCCCCCCh-HHHHHHHHHHHH-hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADP-EFVSKEIVKCIG-MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIV 143 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~-~~~~~~~~~~~~-~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 143 (311)
...+..+.++||+|..+..... .++. .....+. .....++.+++++|+..+. .....+..+.+..+ ..++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~i 252 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGV 252 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHH-HHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEE
Confidence 0023356799999976532110 1121 1222222 2235688888899976332 22334444444333 4788
Q ss_pred EEeccCCCCC
Q 021534 144 VFTGGDELED 153 (311)
Q Consensus 144 v~nk~D~~~~ 153 (311)
++||.|....
T Consensus 253 ivTh~d~~a~ 262 (304)
T 1rj9_A 253 IVTKLDGTAK 262 (304)
T ss_dssp EEECTTSSCC
T ss_pred EEECCccccc
Confidence 9999986533
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.4e-07 Score=79.11 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=66.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCC--CCc---------ceeEEEEEEE---------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA------FMSKAGS--SGV---------TKTCEMQRTM--------------- 65 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~~~~~--~~~---------T~~~~~~~~~--------------- 65 (311)
.+.-.|+++|++||||||+++.|.|... ...+... .+. ...+.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3457899999999999999999976421 1000000 000 0000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 66 -LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 66 -~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
...+..+.++||+|...... ....++....... .+|-.++++|+... ......+..+.+..+ ..+++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence 00234577899999865322 2233333222111 36889999997633 222333444443332 46889
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|....
T Consensus 275 lTKlD~~a~ 283 (328)
T 3e70_C 275 LTKLDADAR 283 (328)
T ss_dssp EECGGGCSC
T ss_pred EeCcCCccc
Confidence 999997533
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-06 Score=73.82 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh------CCccccccCCCCCc-c------------eeEEEE---------------EEE
Q 021534 20 ERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGSSGV-T------------KTCEMQ---------------RTM 65 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~~~~-T------------~~~~~~---------------~~~ 65 (311)
...|+++|++|+||||+++.|. |..+.......... + ..+... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999986 33332111111000 0 000000 001
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
. .+..+.||||||.... ...+.+..++..... ...+|.+++|+|+... .......+.+... .....+|+
T Consensus 178 ~-~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~~-----~~i~gvVl 246 (297)
T 1j8m_F 178 S-EKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQA-----SKIGTIII 246 (297)
T ss_dssp H-TTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHT-----CTTEEEEE
T ss_pred h-CCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHhh-----CCCCEEEE
Confidence 1 4557999999997651 122333333332211 2257999999998622 2223333333321 12378899
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||+|....
T Consensus 247 nk~D~~~~ 254 (297)
T 1j8m_F 247 TKMDGTAK 254 (297)
T ss_dssp ECGGGCTT
T ss_pred eCCCCCcc
Confidence 99996543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=76.16 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-------CCccccccCCCCCc-c----------eeEEEEE--------------E-
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL-------GKKAFMSKAGSSGV-T----------KTCEMQR--------------T- 64 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~-------g~~~~~~~~~~~~~-T----------~~~~~~~--------------~- 64 (311)
.+...|+++|.+|+||||++..|. |..+......+... . ..+.... +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999887 65543221111000 0 0000000 0
Q ss_pred Eee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEE
Q 021534 65 MLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIV 143 (311)
Q Consensus 65 ~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 143 (311)
... .+..+.||||||.... ...+..++.... ....+|.+++|+|+... .........+.... ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~--~~~~p~~vllVvda~~g--~~~~~~~~~f~~~l-----~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVH--ASINPVETLFVVDAMTG--QDAANTAKAFNEAL-----PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHH--HHSCCSEEEEEEETTBC--TTHHHHHHHHHHHS-----CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHH--HhhcCcceeEEeecchh--HHHHHHHHHHhccC-----CCeEE
Confidence 000 3567999999997642 222333333322 13367999999998733 22223333333211 12457
Q ss_pred EEeccCCCCC
Q 021534 144 VFTGGDELED 153 (311)
Q Consensus 144 v~nk~D~~~~ 153 (311)
|+||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 9999997543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-07 Score=83.19 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCCCc-----------ceeEEEEEEE---------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK------AFMSKAGSSGV-----------TKTCEMQRTM--------------- 65 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~~~~-----------T~~~~~~~~~--------------- 65 (311)
...-.|+|+|.+|||||||++.|.|.. +...+...... -..+.+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 345789999999999999999987632 11111110000 0001111000
Q ss_pred -eeCCceEEEEeCCCCCCCCCChHHHHHHHHHH---HHhc-cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 66 -LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC---IGMA-KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 66 -~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~---~~~~-~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
...+..+.||||+|.... ...+..++... +... ...++-+++|+|+..+ ......++.+.+..+ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence 003456889999997642 23333333332 2211 1236889999997622 222334444554443 3
Q ss_pred EEEEEeccCCCC
Q 021534 141 MIVVFTGGDELE 152 (311)
Q Consensus 141 ~ilv~nk~D~~~ 152 (311)
..+|+||.|...
T Consensus 441 tgvIlTKLD~ta 452 (503)
T 2yhs_A 441 TGITLTKLDGTA 452 (503)
T ss_dssp SEEEEECGGGCS
T ss_pred CEEEEEcCCCcc
Confidence 678999999653
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.1e-06 Score=74.78 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-------C----------CccccccCCCCCcceeEEEEEE----EeeCC--ceEEE
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL-------G----------KKAFMSKAGSSGVTKTCEMQRT----MLKAG--QVVNV 74 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~-------g----------~~~~~~~~~~~~~T~~~~~~~~----~~~~~--~~l~l 74 (311)
.+...|+|+|.+++|||+|+|.|+ | ...|..+.+..++|..+-.+.. ....+ ..+.|
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 355788899999999999999765 2 2345555555566666654421 11122 36999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHH-HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHH---hCCC----ccCeEEEEEe
Q 021534 75 IDTPGLFDSSADPEFVSKEIVKC-IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESL---FGKK----ISDYMIVVFT 146 (311)
Q Consensus 75 iDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~---~~~~----~~~~~ilv~n 146 (311)
+||.|++|...+... ...|... +.. ++.+||=... .+...+...|..+.++ ...+ ....++.++-
T Consensus 145 lDTEG~~d~~~~~~~-d~~ifaLa~LL----SS~~IyN~~~--~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvR 217 (457)
T 4ido_A 145 MDTQGTFDSQSTLRD-SATVFALSTMI----SSIQVYNLSQ--NVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVR 217 (457)
T ss_dssp EEECCBTCTTCCHHH-HHHHHHHHHHH----CSEEEEEEES--SCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEE
T ss_pred EeccCCCCcccCccc-cHHHHHHHHHH----hhheeecccc--cCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEe
Confidence 999999987654322 2222221 112 2566666553 4556666666655543 2222 1224666665
Q ss_pred ccC
Q 021534 147 GGD 149 (311)
Q Consensus 147 k~D 149 (311)
-|-
T Consensus 218 Df~ 220 (457)
T 4ido_A 218 DWS 220 (457)
T ss_dssp TCC
T ss_pred cCC
Confidence 554
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.4e-07 Score=70.96 Aligned_cols=106 Identities=6% Similarity=-0.003 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC---ccCeEEEEEecc-CCCCCChhcHHHHhhhcCC
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECP 167 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~ 167 (311)
..++..|..|+.++|++|||+|++++-....+.-+..|..+...+ ...|++|+.||. |+... ....+.... ..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~ 189 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH 189 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC
Confidence 457778888899999999999997442222344443444444332 235899999996 55433 333332222 10
Q ss_pred chHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 168 ~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..+ ...++. ..+||.++.|+.+-++|+.+.+.
T Consensus 190 --L~~l----~R~W~I----q~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 190 --LNLL----NHPWLV----QDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp --GGGG----CSCEEE----EEEETTTCTTHHHHHHHHTTTTT
T ss_pred --CcCC----CCCEEE----EEeECCCCcCHHHHHHHHHHHHH
Confidence 1221 233333 23688889999999999986553
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=68.65 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCCC-c----------ceeEEEEEE----------------E
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK------AFMSKAGSSG-V----------TKTCEMQRT----------------M 65 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~~~-~----------T~~~~~~~~----------------~ 65 (311)
....|+++|++|+||||++..|.+.- +......... . ...+..... .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44689999999999999999886531 1100000000 0 000000000 0
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH---Hhcc-CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI---GMAK-DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~---~~~~-~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
...+..+.|+||||.. .....+.+++.... ...+ ..+|.+++|+|+..+ .........+.+.. ...
T Consensus 183 ~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~-----~i~ 252 (306)
T 1vma_A 183 LARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVT 252 (306)
T ss_dssp HHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCC
T ss_pred HhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcC-----CCC
Confidence 1134578999999953 23344444444332 2222 348999999998611 12222223333222 246
Q ss_pred EEEEeccCCCCC
Q 021534 142 IVVFTGGDELED 153 (311)
Q Consensus 142 ilv~nk~D~~~~ 153 (311)
-+|+||.|....
T Consensus 253 gvVlTk~D~~~~ 264 (306)
T 1vma_A 253 GIILTKLDGTAK 264 (306)
T ss_dssp EEEEECGGGCSC
T ss_pred EEEEeCCCCccc
Confidence 678899997544
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-07 Score=79.39 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
...++|+|++|+|||||+|+|+|.....++.... .+|..... +.. . ...++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence 4689999999999999999999876433332221 23332221 122 2 3479999998753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-05 Score=68.03 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCCCc-------c----eeEEEEEEEe---------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA------FMSKAGSSGV-------T----KTCEMQRTML--------------- 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~~~~~~~~-------T----~~~~~~~~~~--------------- 66 (311)
+.-.|+++|++||||||+++.|.|... ...+...... + ..+.+.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 456899999999999999999976421 1111110000 0 0011111000
Q ss_pred --eCCceEEEEeCCCCCCCCCChHHHHHHH---HHHHH-hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 67 --KAGQVVNVIDTPGLFDSSADPEFVSKEI---VKCIG-MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 67 --~~~~~l~liDTPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
..+....++||.|..... +....++ ...+. .....++-+++|+|++..+... ..+..+.+..+ .
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~--~~~~~~~~~~g-----~ 305 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVG-----I 305 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTC-----C
T ss_pred HHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHH--HHHHHHHHhcC-----C
Confidence 012346799999986532 2222222 22222 2235688889999955333222 22333443333 3
Q ss_pred EEEEEeccCCCCC
Q 021534 141 MIVVFTGGDELED 153 (311)
Q Consensus 141 ~ilv~nk~D~~~~ 153 (311)
.++++||.|....
T Consensus 306 t~iiiThlD~~~~ 318 (359)
T 2og2_A 306 TGLILTKLDGSAR 318 (359)
T ss_dssp CEEEEESCTTCSC
T ss_pred eEEEEecCccccc
Confidence 6788999986644
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.8e-06 Score=71.57 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=64.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc-------cccccCCCCCccee-----------EEEEE----------E-EeeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK-------AFMSKAGSSGVTKT-----------CEMQR----------T-MLKAG 69 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~-------~~~~~~~~~~~T~~-----------~~~~~----------~-~~~~~ 69 (311)
....|+++|++|+||||++..|.+.- +......+...+.. +.... + .. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cC
Confidence 45689999999999999999886421 11011111000000 00000 0 11 34
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.|+||||.... ......++...+. ...++.+++|+|+++.. .+ +..+.+.+. .....-+|+||.|
T Consensus 183 ~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~--~~---~~~~~~~~~--~l~~~giVltk~D 250 (296)
T 2px0_A 183 YDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY--ED---MKHIVKRFS--SVPVNQYIFTKID 250 (296)
T ss_dssp SSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH--HH---HHHHTTTTS--SSCCCEEEEECTT
T ss_pred CCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH--HH---HHHHHHHHh--cCCCCEEEEeCCC
Confidence 57999999998752 2222233333221 12467889999987432 11 222222232 1234567789999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
....
T Consensus 251 ~~~~ 254 (296)
T 2px0_A 251 ETTS 254 (296)
T ss_dssp TCSC
T ss_pred cccc
Confidence 6643
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-05 Score=67.94 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=66.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCCCCc--------------ceeEEEE-E-------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK------KAFMSKAGSSGV--------------TKTCEMQ-R------------- 63 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~~~~--------------T~~~~~~-~------------- 63 (311)
.+...|+|+|++|+||||++..|.+. .+.......... ...+.+. .
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 34578999999999999999887542 221111111000 0011111 0
Q ss_pred -E--EeeCCceEEEEeCCCCCCCCCChHHHHHHHHH---HHHhcc-CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC
Q 021534 64 -T--MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK---CIGMAK-DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK 136 (311)
Q Consensus 64 -~--~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~---~~~~~~-~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~ 136 (311)
+ ....+..+.||||||.... .+....++.. .+.... ..+|.+++|+++... ...+..++. +...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhhc
Confidence 0 0013457999999996541 2223333322 222122 347999999998722 223344444 3221
Q ss_pred ccCeEEEEEeccCCCCC
Q 021534 137 ISDYMIVVFTGGDELED 153 (311)
Q Consensus 137 ~~~~~ilv~nk~D~~~~ 153 (311)
....-+|+||.|....
T Consensus 254 -~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTSK 269 (320)
T ss_dssp -SCCCEEEEECGGGCSC
T ss_pred -CCCcEEEEeCCCCCCc
Confidence 2345688999996533
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=72.73 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=64.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCCCCc-c----------eeEEEEE--------------EE-e
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK------KAFMSKAGSSGV-T----------KTCEMQR--------------TM-L 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~~~~-T----------~~~~~~~--------------~~-~ 66 (311)
+...|+++|++|+||||++..|.+. .+.......... . ..+..+. +. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999888542 211111110000 0 0000000 00 0
Q ss_pred -eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 67 -KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 67 -~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+..+.||||||.... +..+..++....... .+|.+++|+|+... .........+.... ....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence 03457899999996643 233333333332221 57899999998622 22223333333222 2467789
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99996543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=75.78 Aligned_cols=58 Identities=29% Similarity=0.536 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCC--C----cceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSKAGSS--G----VTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~--~----~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
-.++|+|++|+|||||+|.|+|... ..++.... + +|....... + . ....++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~--v-~-q~~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYH--F-P-HGGDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEE--C-T-TSCEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEE--E-C-CCCEecCcccHHH
Confidence 4789999999999999999999764 33332211 1 222222222 1 2 2345899999544
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.2e-05 Score=66.55 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.++++|++||||||+++.|.|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=8e-06 Score=70.40 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=62.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhH-HHHHHHHHHHhCCCccCeEEEEEec
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEE-GAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
..+.+||| .... ......++.++|++|+|+|++++. +... ..++..+.. ...|+++|+||
T Consensus 63 ~~~~iwD~--qer~-----------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRK-----------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCS-----------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECC
T ss_pred CeEEEEEE--cccc-----------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeH
Confidence 47999999 2221 112234688999999999998553 3332 334444433 13599999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+|+... ..+++ ...++..++ ..++. +||.++.|+++++..+.
T Consensus 125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~~------~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 125 MDLYDE--DDLRK---------VRELEEIYSGLYPIVK------TSAKTGMGIEELKEYLK 168 (301)
T ss_dssp GGGCCH--HHHHH---------HHHHHHHHTTTSCEEE------CCTTTCTTHHHHHHHHS
T ss_pred HHcCCc--hhHHH---------HHHHHHHHhhhCcEEE------EECCCCcCHHHHHHHhc
Confidence 998754 33211 122222223 34444 78888888888887653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.2e-06 Score=70.72 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC----C--cceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS----G--VTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~----~--~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
...++++|++|+|||||+|+|+ .....++.... | +|..... +.. . ..-.++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~-~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPF-G-KGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEE-T-TTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEc-C-CCcEEEECcCcCc
Confidence 3578999999999999999999 54433332221 1 2222221 111 1 2346899999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=6.3e-06 Score=71.05 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
..++++|++|+|||||+|.|.|.....++.... ..|..... +.. .....++||||+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~--~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKF--DFGGYVVDTPGFANL 234 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EEC--TTSCEEESSCSSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEc--CCCCEEEECcCCCcc
Confidence 578999999999999999999976533332221 12222211 111 123468999997653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.3e-05 Score=66.27 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=64.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCCCC-cc----------eeEEEEE--------------EE-e
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK------KAFMSKAGSSG-VT----------KTCEMQR--------------TM-L 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~~~-~T----------~~~~~~~--------------~~-~ 66 (311)
....|+++|++|+||||++..|.+. .+......... .+ ....... +. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999888643 11111111000 00 0000000 00 0
Q ss_pred -eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 67 -KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 67 -~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+..+.|+||||.... +.....++....... .+|.+++|+|+... .......+.+.... ...-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~~~~~~~~~~~~~-----~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HHHHHHHHHHhhcC-----CCCEEEE
Confidence 03457899999986542 233334444333322 46888999997621 22222223222211 2466889
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 245 nk~d~~~~ 252 (295)
T 1ls1_A 245 TKLDGDAR 252 (295)
T ss_dssp ECGGGCSS
T ss_pred ECCCCCcc
Confidence 99996543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.9e-05 Score=68.77 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+.+.+.+..+.+..|++++|+|+++. +..+...+.+.++ .+|+++|+||+|+... ....+.+.. .+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~--~~~~~~~~~----~l~ 123 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVG---NNKVLLVGNKADLIPK--SVKHDKVKH----WMR 123 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSS---SSCEEEEEECGGGSCT--TSCHHHHHH----HHH
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhC---CCcEEEEEEChhcCCc--ccCHHHHHH----HHH
Confidence 44666666667778999999999842 2334445566554 3699999999998765 211111111 123
Q ss_pred HHHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 172 ~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
......+. .++. +||.++.|+++|++.|.++.
T Consensus 124 ~~~~~~g~~~~~v~~------iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 124 YSAKQLGLKPEDVFL------ISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHTTCCCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccEEE------EeCCCCcCHHHHHhhhhhhc
Confidence 33445554 3444 78889999999999998765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.4e-05 Score=65.72 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=58.2
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..+...+..+|+|++|+|+..+.+..... +.++.+ .+|+++|+||+|+++. ...+. +...+.
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~----l~~~l~---~kp~ilVlNK~DL~~~--~~~~~---------~~~~~~ 76 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPM----IEDILK---NKPRIMLLNKADKADA--AVTQQ---------WKEHFE 76 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHH----HHHHCS---SSCEEEEEECGGGSCH--HHHHH---------HHHHHH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHH----HHHHHC---CCCEEEEEECcccCCH--HHHHH---------HHHHHH
Confidence 33444567789999999998666654322 223333 3699999999998864 33332 233333
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. .|+.++.|+.+|++.+.+.+.
T Consensus 77 ~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 77 NQGIRSLS------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred hcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence 33555555 466677888888887777654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.7e-05 Score=69.00 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=62.9
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+.+.+..++..++++++|+|+++... .+...+.+.++ .+|+++|+||+|+++. ....+.+.. .+..
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~---~~piilV~NK~DLl~~--~~~~~~~~~----~l~~ 126 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAA---DNPILLVGNKADLLPR--SVKYPKLLR----WMRR 126 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCT---TSCEEEEEECGGGSCT--TCCHHHHHH----HHHH
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhC---CCCEEEEEEChhcCCC--ccCHHHHHH----HHHH
Confidence 355555555667799999999984432 12233444444 3699999999998865 221111111 1233
Q ss_pred HHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+...|. .++. +||.++.|+++|++.|.++..
T Consensus 127 ~~~~~g~~~~~v~~------iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 127 MAEELGLCPVDVCL------VSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHTTTCCCSEEEE------CBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccEEE------EECCCCCCHHHHHHHHHhhcc
Confidence 4455555 3444 788899999999999987663
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=62.83 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=50.0
Q ss_pred ccCCccEEEEEEECCCC-CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNR-FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++.++|++++|+|++++ ++... ..++..+.. ...|+++|+||+|+.++ ..+.. ... +.......+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~--~~v~~-~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNE--EEKKE-LER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCH--HHHHH-HHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCc--cccHH-HHH-----HHHHHHHCC
Confidence 57889999999999855 34442 233433333 23589999999998754 32110 111 233334445
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSL 204 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~ 204 (311)
..++. +||.++.|+++|++.
T Consensus 143 ~~~~~------~SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 143 YDVLK------VSAKTGEGIDELVDY 162 (302)
T ss_dssp CEEEE------CCTTTCTTHHHHHHH
T ss_pred CeEEE------EECCCCCCHHHHHhh
Confidence 55554 556666666666653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.61 E-value=5.8e-06 Score=66.39 Aligned_cols=26 Identities=38% Similarity=0.778 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
....|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34678999999999999999998653
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.001 Score=53.38 Aligned_cols=69 Identities=7% Similarity=-0.016 Sum_probs=42.4
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
...+.|||||+..+ ......+. .+|.+|+++..+ ........+++.+..........++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC---------HHHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45789999998553 11222222 359999999887 44333456666666543212223679999999
Q ss_pred CCC
Q 021534 149 DEL 151 (311)
Q Consensus 149 D~~ 151 (311)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=3.5e-05 Score=64.96 Aligned_cols=105 Identities=6% Similarity=0.004 Sum_probs=60.7
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC---ccCeEEEEEecc-CCCCCChhcHHHHhhhcCCc
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECPK 168 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~~ 168 (311)
.++..|..++.++|++|||+|++++-......-+..|..+...+ ...|++|+.||. |.... ....+.... ..
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~-L~- 274 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH- 274 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHH-TT-
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHH-cC-
Confidence 35667777888899999999997433222333233222222211 124899999974 66544 333332222 10
Q ss_pred hHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..+ ...++. ..+||.++.|+.+-++|+.+.+.
T Consensus 275 -L~~l----~r~W~I----q~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 -LNLL----NHPWLV----QDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp -GGGG----CSCEEE----EEEETTTCTTHHHHHHHHHHHSC
T ss_pred -CccC----CCcEEE----EecccCCCcCHHHHHHHHHHHHH
Confidence 1221 223333 23678899999999999987663
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.44 E-value=5.5e-05 Score=59.81 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+++++|++|+|||||++.|.|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=5.3e-05 Score=60.99 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..++|+|++|||||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999874
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=9e-05 Score=58.62 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999874
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|||||||++.|.|..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998853
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=59.94 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5789999999999999999998653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=59.73 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++++|++|||||||++.|.|-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0019 Score=58.23 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=58.44 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|||||||++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 57899999999999999999875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=57.06 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 67999999999999999999886
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00012 Score=59.78 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-.++|+|++|||||||++.|.|.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999884
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00014 Score=59.42 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++|+|++|||||||++.|+|..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999998854
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00014 Score=58.98 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.....|+|+|++|||||||++.|.|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999998753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=59.65 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999999643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00016 Score=58.55 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+...|+|+|++|||||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999874
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=60.85 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 568999999999999999999864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00019 Score=60.53 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5789999999999999999998643
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00023 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|+|-..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999998653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00019 Score=58.46 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999998643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=60.09 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999998653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=59.63 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|+|-..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999643
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=56.11 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.++++|++|||||||++.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5789999999999999998664
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00033 Score=58.23 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||++.|.|-..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999998643
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|||||||++.|.|..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=59.65 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00026 Score=58.29 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|+|-..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4789999999999999999998643
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=59.37 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++++|++|||||||++.|.|-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999995
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=59.28 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999999999999999998653
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00028 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 578999999999999999999864
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00029 Score=58.89 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh---CCcc
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL---GKKA 45 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~---g~~~ 45 (311)
.....|+|+|++||||||+++.|. |-..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 345789999999999999999998 7543
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00029 Score=58.49 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999998643
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0023 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 56899999999999999999764
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00041 Score=55.98 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.........|+|+|.+||||||+.+.|.+.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3334445578999999999999999999875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00025 Score=59.67 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.++|+|++|||||||++.|+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4468999999999999999999874
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=59.04 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|||||||++.|.|-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999999864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00034 Score=59.05 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|||||||++.|+|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999996
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00038 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|.|-..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999998643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00024 Score=59.81 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=31.0
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+..+|+|+.|+|+..+.+..... +..+ .+|.++|+||+|+++.
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~-l~ll--------~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYG-VDFS--------RKETIILLNKVDIADE 61 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTT-SCCT--------TSEEEEEEECGGGSCH
T ss_pred HHhhCCEEEEEeeCCCCCcCcChH-HHhc--------CCCcEEEEECccCCCH
Confidence 356779999999998665543211 1111 3699999999998865
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00033 Score=59.47 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|.|-..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4789999999999999999998653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00035 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|+|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0031 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 56999999999999999999864
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00034 Score=59.12 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++|+|++|||||||++.|.|-..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999999643
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=56.92 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...|+|+|++||||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0001 Score=58.64 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++|||||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00035 Score=58.41 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999998653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00029 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.578 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+|+|++||||||+++.|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999865
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00019 Score=58.19 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++++|++|||||||++.|.|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999987
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00037 Score=58.73 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5789999999999999999998643
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0003 Score=60.33 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-.++|+|++|+|||||++.|+|-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 367899999999999999999863
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00038 Score=58.58 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++++|++|||||||++.|.|-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999865
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0033 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00037 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998754
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00031 Score=60.42 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++|+|++|||||||++.|+|-..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 45789999999999999999998643
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0058 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|.|+||+|||+++.++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00031 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.|+++|++|+|||||++.|.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=59.89 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.....|+|+|++|||||||++.|.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 455789999999999999999998743
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00052 Score=58.59 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5789999999999999999998653
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00049 Score=60.35 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4689999999999999999999653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00062 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh---CCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSIL---GKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~---g~~~ 45 (311)
...|+|+|++||||||+++.|. |-..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3689999999999999999998 7643
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00032 Score=57.68 Aligned_cols=25 Identities=40% Similarity=0.524 Sum_probs=16.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh-CCc
Q 021534 20 ERNLVLVGRTGNGKSATANSIL-GKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~-g~~ 44 (311)
...|+|+|++||||||+++.|. +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578999999999999999999 753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00044 Score=53.95 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00047 Score=54.74 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|++||||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999975
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00051 Score=60.39 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-.|+|+|++|||||||+++|+|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00058 Score=59.90 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999999999999999999653
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.002 Score=55.34 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=31.9
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++|.+++|+|+..+..... .+-+.+..... ...|.++|+||+|+.++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~--~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEA--NDIQPIICITKMDLIED 132 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHH--CCCCEEEEEECCccCch
Confidence 567899999999984444333 22233322111 23588999999998866
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00072 Score=59.39 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|.|-..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 5689999999999999999998653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00063 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999753
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0021 Score=57.82 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 67999999999999999999864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00026 Score=55.45 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++|||||||++.|.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00058 Score=60.26 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.|+|+|++|+|||||+|.|+|..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00065 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+...|+|+|++|||||||++.|.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998763
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00067 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|++||||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0008 Score=59.12 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 5689999999999999999999643
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=53.51 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=40.2
Q ss_pred CceEEEEeCCCC-CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 69 GQVVNVIDTPGL-FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 69 ~~~l~liDTPG~-~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
...+.|||||+. .+. ..... +..+|.+|+++..+ ..... ...+++.+.... ..++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~----l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~----~~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEAL----ADGCDLLVIPSTPD-ALALDALMLTIETLQKLG----NNRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHH----HHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC----SSSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHH----HHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc----CCCEEEEEE
Confidence 457899999986 431 11122 23469999998876 32222 234555555432 236889999
Q ss_pred ccCCCC
Q 021534 147 GGDELE 152 (311)
Q Consensus 147 k~D~~~ 152 (311)
++|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00082 Score=59.43 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 5689999999999999999999653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00082 Score=59.11 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 5689999999999999999999653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0007 Score=59.83 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4689999999999999999999653
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.006 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..-|++.|+||+|||+|..++.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 367999999999999999999764
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0008 Score=58.17 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....+.|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345588999999999999999988653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00066 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 67899999999999999999864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0005 Score=59.90 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|+|||||++.|+|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999854
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00094 Score=58.95 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 5789999999999999999999653
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999988643
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00085 Score=57.81 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|+|+|++|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00073 Score=59.83 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.|+|+|++|||||||++.|+|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4467999999999999999999874
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0069 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|+||+|||+|++++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00096 Score=51.82 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l 40 (311)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0012 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+|+|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998853
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00071 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|||||||++.|+|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00088 Score=59.55 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|||||||++.|.|-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3578999999999999999999864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00082 Score=54.87 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00079 Score=58.93 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4789999999999999999999653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00086 Score=55.12 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|+|.|.+||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578999999999999999998764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00077 Score=62.21 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++|||||||+|+|+|.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999999753
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0011 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|+|.+|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0009 Score=60.10 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.|+|+|++|||||||+++|+|.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999874
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0017 Score=52.04 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+......|+|+|.+||||||+.+.|..
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444567899999999999999998863
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00074 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++++|++|+|||||++++.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00074 Score=59.66 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-+++|+|++|||||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998854
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
......|+|+|++|||||||++.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00092 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0017 Score=60.31 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|...
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5679999999999999999999653
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00075 Score=59.23 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999999999999999999653
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0015 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.7 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...++|+|+||+|||+++..+.+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999998764
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0016 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+++|++||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00088 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
....++++|++|+|||||++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998743
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0022 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=50.12 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+.|+|+|.+|+|||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998763
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=51.71 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
..+|+|++|+|||||+.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=59.77 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.+.-.++++|++|||||||++.|.|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446789999999999999999999653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999986
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.002 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=50.81 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999853
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.026 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|++.|++|+|||++..++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999998753
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0014 Score=55.39 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0031 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998653
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=51.21 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0013 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++|+|.+|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999753
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0025 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0024 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.....|+|+|+|||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999964
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0025 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998853
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0016 Score=59.32 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++|+|++|||||||++.|+|-.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4679999999999999999998864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0026 Score=59.92 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 446789999999999999999999654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0025 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+++|.+||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.018 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0019 Score=58.92 Aligned_cols=24 Identities=29% Similarity=0.327 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 578999999999999999998743
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0028 Score=59.70 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3446789999999999999999999653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0031 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999986
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.003 Score=59.42 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|-..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 35789999999999999999998643
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.002 Score=53.64 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+++|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=48.05 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=38.1
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
....+.|||||+..+.. .. ..+..+|.+|+|++.+ ..+... ..+++.+.. .+. ..+.+|+|
T Consensus 130 ~~yD~viiD~pp~~~~~---------~~----~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~-~~~---~~~~~v~N 191 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL---------TR----GTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGD-LGI---KKVRYVIN 191 (254)
T ss_dssp TCCSEEEEEECTTCTTC---------CH----HHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHH-HTC---SCEEEEEE
T ss_pred CCCCEEEEeCCCcccHH---------HH----HHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHH-cCC---ccEEEEEe
Confidence 45578999998754321 11 1134579999999876 333333 233333333 332 46889999
Q ss_pred ccC
Q 021534 147 GGD 149 (311)
Q Consensus 147 k~D 149 (311)
+.+
T Consensus 192 ~~~ 194 (254)
T 3kjh_A 192 KVR 194 (254)
T ss_dssp EEC
T ss_pred CCC
Confidence 988
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0031 Score=49.87 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999875
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=51.38 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
-.+|+|++|+|||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999986
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0032 Score=59.20 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|-..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999998643
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0033 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999998753
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=51.25 Aligned_cols=20 Identities=45% Similarity=0.792 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
+|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0034 Score=58.26 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|+|-..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999999654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0034 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...|+|+|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.055 Score=46.69 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||+|..++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 367999999999999999999753
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0037 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0024 Score=55.92 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-+++++|++|+|||||++.|.|..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0045 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999885
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0032 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998853
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0032 Score=50.92 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0039 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....+|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.004 Score=57.90 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|+|...
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0052 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..++|.|++|+||||++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.07 E-value=0.03 Score=48.96 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=27.9
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHH--HHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHIL--ESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l--~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++|.+++|+...+.++... +-+.| ....+ .|.++|+||+|+.++
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~--i~r~L~~a~~~~----~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNI--IDRYLVGCETLQ----VEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHH--HHHHHHHHHHHT----CEEEEEEECGGGCCH
T ss_pred HhcCCEEEEEEeCCCCCCHHH--HHHHHHHHHhcC----CCEEEEEECccCCCc
Confidence 467899998765543333332 21222 12233 478999999998865
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0031 Score=59.49 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|+|-..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 346889999999999999999998653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0026 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.++++|++|+|||||++.+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999874
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0044 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...+|+|+|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999853
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0037 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999986
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0044 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0043 Score=58.46 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|.|...
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999999654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0048 Score=46.96 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 355889999999999999974
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0036 Score=48.80 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|+|.+||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0026 Score=59.70 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|-..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 345789999999999999999998653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0028 Score=54.13 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|+|||||++.|.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.003 Score=53.40 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0045 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998854
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0018 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0043 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0044 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998853
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.009 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 021534 19 GERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
....|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0029 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..++++|++|+|||||++.+.+.-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998753
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0034 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+++|.|||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999999864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0032 Score=56.87 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-+++++|++|+|||||++.|.|..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999998854
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0036 Score=58.91 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|-..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45789999999999999999998653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0042 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+++|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35889999999999999999986
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.042 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+++|.+||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446788999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0047 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0049 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0054 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0052 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|+|++|||||||.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.057 Score=43.04 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++|.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0053 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...|++.|++||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999986
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0058 Score=57.54 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.++|+|++|+|||||++.|.|-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 479999999999999999999754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.00065 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.++|+|++|||||||+++|.|..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0046 Score=48.58 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 459999999999999998874
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0048 Score=47.82 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999885
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0041 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
..+|+|+|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0064 Score=47.55 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0041 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.036 Score=49.16 Aligned_cols=24 Identities=38% Similarity=0.673 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998643
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.006 Score=49.73 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
.|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0089 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|+|||||+|....|...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4456778999999999999888644
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0071 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|+|.+|+||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0058 Score=49.34 Aligned_cols=22 Identities=18% Similarity=-0.014 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.++++|++|+|||||+..+++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0049 Score=50.63 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0084 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0071 Score=46.74 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-+|+|.|.+||||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999884
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0064 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.718 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+++|++|+||||++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999764
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.61 E-value=0.024 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||+|+.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999998653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|.|++|+|||+|..++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999998754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0044 Score=61.22 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|+|...
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999653
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0072 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+|+|+|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888654
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0084 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.....|+|+|.+||||||+.+.|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999998885
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0074 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
.+|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999884
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0044 Score=63.79 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-+|++||+||||||||++.|+|-.
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 4589999999999999999999854
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0093 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.....|+|+|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.05 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-|++.|+||+|||+|.+++.+..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.041 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-|+++|+||+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.24 Score=42.40 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
-+++.|++|+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 356667799999999999864
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.01 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|++.|++|+|||+|+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0096 Score=61.31 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||++.|+|...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CcEEEEEecCCCcHHHHHHHhccccc
Confidence 35899999999999999999999754
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.025 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.++|.|++|+||||++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0082 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988654
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.011 Score=48.30 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0087 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.+++.|+||+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999888754
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.012 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 456889999999999999873
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.015 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+...++|+|++|+|||++..+|.+.
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHH
Confidence 34468999999999999999998764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.003 Score=56.61 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998873
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0078 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.-.++|+|++|+|||||+..+++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998876
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.012 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.015 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|+||||||||...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 35789999999999999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0083 Score=59.26 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|+|||||++.|.|..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999643
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.013 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|++|+|||++..+|...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999998653
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.015 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|+|.|+||+|||++..++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999877643
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0067 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
....|+|+|.+|||||||++.|.+.-
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0072 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=17.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.017 Score=50.03 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|+||+|||||...|...-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999997653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.012 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||++.|+|...
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999999999999999998653
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.015 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|+||||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 56899999999999999998644
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.016 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998754
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.018 Score=46.90 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.++.......|+|.|.+||||||+++.|..
T Consensus 14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 14 AQTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455568899999999999999998854
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.013 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||+|++++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 357899999999999999999754
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.015 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|+||||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999988864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0083 Score=57.38 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
-.++|+|++|||||||+|.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 467999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.017 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|+||||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988643
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.015 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+++|+|++|+|||||++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.012 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++++|++|+||||+++.|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998763
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.018 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..-|++.|+||+|||+|..++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356778899999999999998753
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.011 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.+++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999998753
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=94.79 E-value=0.019 Score=50.00 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 344789999999999999974
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=18.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|.|.+||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..++|+|++|+|||||+++|.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999875
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...+++|+|.||+|||+++|+|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.012 Score=50.85 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|+|++|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999986
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.016 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...++|.|++|+|||||++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 311 | ||||
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 2e-25 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 4e-07 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 3e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 6e-04 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 99.9 bits (248), Expect = 2e-25
Identities = 45/253 (17%), Positives = 98/253 (38%), Gaps = 29/253 (11%)
Query: 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79
++++G+ G GKS+T NSI+G++ S + + R+ AG +N+IDTPG
Sbjct: 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89
Query: 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSI-RNRFSKEEGAAIHILESLFGKKIS 138
L + + I + I +L V + R + + FGK I
Sbjct: 90 LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147
Query: 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQV 198
+ IV T + +++ + + L ++++ +
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDA-------------- 192
Query: 199 GKLLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKKSYDDQLKRITEMFESKLKETTT 258
S + V+++N G+ ++ ++ + ++ ITE+ +K +
Sbjct: 193 --QASDIPVVLIENSGRCNKNDSDEKVLP-NGIAWIPHL----VQTITEVALNKSESIF- 244
Query: 259 RLEQQLAEEQAAR 271
+++ L ++ AA
Sbjct: 245 -VDKNLIDKLAAA 256
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.6 bits (115), Expect = 4e-07
Identities = 40/292 (13%), Positives = 90/292 (30%), Gaps = 52/292 (17%)
Query: 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTC-EMQRTMLKAGQVVNVI 75
+ N+ + G TG+GKS+ N++ G A +GV + E V
Sbjct: 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112
Query: 76 DTPGLFDSSADPEFVSKE-----IVKCIGMAKDGIHA---------------VLLVFS-- 113
D PG+ ++ P+ ++ I ++ V +
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKV 172
Query: 114 ----------IRNRFSKEEGAAI---HILESLFGKKISDYMIVVFTGGDELEDNDETLED 160
F KE+ + + + I++ I + + + + L D
Sbjct: 173 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 232
Query: 161 YLGRECPKPLKE-ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTD 219
L + P + + N K + K+ + + + ++I P
Sbjct: 233 KLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNII------PSLT 286
Query: 220 EIFAELKRAELKEQMKKSY-------DDQLKRITEMFESKLKETTTRLEQQL 264
+ E ++ K Y + L+R+ +E ++ + ++
Sbjct: 287 FLLDSD--LETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPA 336
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81
++ LVG GKS+ ++ A T + + + + + D PG+
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60
Query: 82 DSSADPEFVSKEIVKCIGMAKDGIH 106
+ +++ + + E ++ I + ++
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLY 85
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 37.6 bits (86), Expect = 6e-04
Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 3/144 (2%)
Query: 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84
LVG GKS + + K A T + G+ + D PGL + +
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144
+ + ++ I I V+ + + R ++ I+ S + ++++ ++
Sbjct: 64 HQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122
Query: 145 FTGGDELEDNDETLEDYLGRECPK 168
++ + E LE + +
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDD 146
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.93 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.92 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.9 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.88 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.86 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.86 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.85 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.85 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.84 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.84 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.84 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.84 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.83 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.82 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.82 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.82 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.81 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.81 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.81 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.8 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.8 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.8 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.8 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.79 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.79 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.79 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.79 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.78 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.77 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.77 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.77 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.77 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.77 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.77 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.76 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.75 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.75 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.75 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.75 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.74 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.74 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.73 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.72 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.7 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.7 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.69 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.68 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.66 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.65 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.65 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.63 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.61 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.6 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.6 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.6 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.56 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.56 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.51 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.47 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.46 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.46 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.31 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.27 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.23 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.21 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.2 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.17 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.12 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 99.0 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.94 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.85 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.72 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.64 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.6 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 98.57 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.52 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.47 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.18 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.75 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.62 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.61 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.48 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.41 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.38 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.31 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.3 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.29 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.28 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.28 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.27 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.27 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.23 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.2 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.17 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.16 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.15 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.14 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.13 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.13 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.13 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.12 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.09 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.08 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.08 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.06 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.06 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.05 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.04 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.04 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.03 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.02 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.01 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.01 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.0 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 96.99 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.95 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.93 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.9 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.87 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.86 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.85 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.84 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.83 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.82 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.8 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.79 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.76 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.71 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.69 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.69 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.68 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.65 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.65 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.63 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.63 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.63 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.58 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.52 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.48 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.47 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.44 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.39 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.35 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.35 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.3 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.27 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.27 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.24 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.22 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.21 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.17 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.13 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 95.97 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.95 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.94 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.9 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.9 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.87 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.82 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.78 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.77 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.75 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.74 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.64 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 95.61 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.36 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.36 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.33 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.29 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.24 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.23 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.17 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.15 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 95.07 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.06 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.99 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.96 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.96 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.95 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.76 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.74 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.69 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.67 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 94.65 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.62 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 94.56 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.55 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.39 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.34 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.23 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.19 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.04 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.01 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 93.98 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.97 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.86 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.41 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.17 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.16 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.96 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.8 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.74 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.67 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.66 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.66 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.47 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 92.4 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.28 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.28 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.27 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 92.08 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 92.05 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.93 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.89 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.72 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.51 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.34 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.54 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 89.92 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.44 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.96 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.72 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.61 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.2 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 86.65 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 83.71 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 83.61 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.95 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.03 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 80.4 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 80.37 |
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=5.9e-25 Score=174.99 Aligned_cols=171 Identities=20% Similarity=0.205 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+|+|++|+|||||+|+|+|...... ...+++|.......... .+..+.+|||||+...... ....+...+..
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~---~~~~~~~~~~~ 80 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDA---LGEFMDQEVYE 80 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSH---HHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee-cccCCcccccccceeee-eeeeeeecccccccccccc---cchhccccccc
Confidence 5799999999999999999999875332 23456677776666666 8889999999999865332 23334444555
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-C
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-N 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 179 (311)
++..+|++|||+|++++++..+..+++.++...+. .|+++|+||+|+.... ++... .+....+ .
T Consensus 81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~~----~~~~~--------~~~~~~~~~ 145 (178)
T d1wf3a1 81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKYP----EEAMK--------AYHELLPEA 145 (178)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSSH----HHHHH--------HHHHTSTTS
T ss_pred ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccCH----HHHHH--------HHHhhcccC
Confidence 67889999999999988888887777777764432 6999999999987552 11111 1112222 2
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCc
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYT 218 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 218 (311)
.+++ +||.++.|+++|++.|.+.+++ +.+.||
T Consensus 146 ~~~~------iSA~~~~gi~~L~~~i~~~lpe-~p~~~p 177 (178)
T d1wf3a1 146 EPRM------LSALDERQVAELKADLLALMPE-GPFFYP 177 (178)
T ss_dssp EEEE------CCTTCHHHHHHHHHHHHTTCCB-CCCSSC
T ss_pred ceEE------EecCCCCCHHHHHHHHHHhCCC-CCCCCC
Confidence 3333 6889999999999999998865 555665
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.92 E-value=1e-24 Score=183.24 Aligned_cols=194 Identities=20% Similarity=0.282 Sum_probs=141.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.||+|||||+|+|+|...+.+. ...++|..+..+...+ .+..+.||||||+.++....+.+...+..+
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs-~~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~ 107 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 107 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeec-CCCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence 45699999999999999999999999987654 3467888888888888 899999999999998766555555545443
Q ss_pred HHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
. ....+|+++||++++ .+++..+...+..+.+.||+++.+++++|+||+|...+.+..+++++.. ....+..++..
T Consensus 108 ~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~ 184 (257)
T d1h65a_ 108 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS 184 (257)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred H--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHH
Confidence 3 345789999999986 5799999999999999999999999999999999987655677777664 23334555555
Q ss_pred cCC----------cEEEecCCchhh--h-------hhHHHHHHHHHHHHHHHHHcCCCC
Q 021534 177 CDN----------RCVLFDNKTKDA--A-------KRTEQVGKLLSLVNSVIVQNGGQP 216 (311)
Q Consensus 177 ~~~----------~~~~f~~~~~~s--a-------~~~~~i~~l~~~i~~~~~~~~~~~ 216 (311)
+.. ++..+.|...+. . .....+..++..+.+++.......
T Consensus 185 ~~~~~~~~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i 243 (257)
T d1h65a_ 185 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESI 243 (257)
T ss_dssp HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCE
T ss_pred HhhhhhhhccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCc
Confidence 432 233333321100 0 001246777888887775544444
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=1.8e-23 Score=166.99 Aligned_cols=167 Identities=22% Similarity=0.232 Sum_probs=110.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH----HHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS----KEIVKC 97 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~----~~~~~~ 97 (311)
.|+++|.||||||||+|+|+|... .....+++|.....+ ....+.+|||||++.......... ..+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~--~~~~~~g~T~~~~~~-----~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEI-----EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 74 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC--SSSSSTTCTTSCEEE-----EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCEeeccccc-----ccccceecccCCceeccccccccccccchhhhhh
Confidence 689999999999999999999875 233456777765432 234578999999987665544333 334445
Q ss_pred HHhccCCccEEEEEEECCC-----------CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 98 IGMAKDGIHAVLLVFSIRN-----------RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~-----------~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
+......+|++++|+|+.+ .....+..+++.+... ..|+++|+||+|.+.........+...
T Consensus 75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~~~~~~~~~~~~~~-- 147 (184)
T d2cxxa1 75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKIKNVQEVINFLAEK-- 147 (184)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGCSCHHHHHHHHHHH--
T ss_pred hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehhhhHHHHHHHHHHH--
Confidence 5556678999999999862 3444556666666552 259999999999886522222211111
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+......+++ +||.++.|+++|++.|.+.+++
T Consensus 148 ---~~~~~~~~~~~~~~------vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 148 ---FEVPLSEIDKVFIP------ISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp ---HTCCGGGHHHHEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---hcccccccCCeEEE------EECCCCCCHHHHHHHHHHHccC
Confidence 00000111112333 6889999999999999998875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=5.9e-23 Score=163.53 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=110.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
.|+++|.||||||||+|+|+|.... .....+.|............+..+.+|||||+.+...........+ ...
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~----l~~ 76 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPK--IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----LRH 76 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCE--ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH----HHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc--eeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHH----HHH
Confidence 5999999999999999999998763 3344455665555555553677899999999876321111111112 223
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
+..++++++++|+..............+.........+|+++|+||+|+... ..+.+ +.+.+...+.++
T Consensus 77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~---------~~~~~~~~~~~~ 145 (180)
T d1udxa2 77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGLAV 145 (180)
T ss_dssp HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTSCE
T ss_pred HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHH---------HHHHHHhcCCeE
Confidence 5677999999998744333333333333332222233699999999998866 44433 233334446666
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+. +||.++.|+++|++.|.++++.
T Consensus 146 ~~------iSA~tg~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 146 LP------VSALTGAGLPALKEALHALVRS 169 (180)
T ss_dssp EE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred EE------EEcCCCCCHHHHHHHHHHHHhh
Confidence 65 7899999999999999998865
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=6.6e-22 Score=159.43 Aligned_cols=173 Identities=17% Similarity=0.275 Sum_probs=115.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH--HHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF--VSK 92 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~--~~~ 92 (311)
.|..+-++|+|+|+||||||||+|+|+|..........++.|....... ....+.++|+||++........ ...
T Consensus 18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~ 93 (195)
T d1svia_ 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc----ccccceEEEEEeeccccccccccchhh
Confidence 3455567999999999999999999999764333333444554443332 2456778999997765444332 223
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..........+|++++|+|++++++..+..+++.+... ..|+++|+||+|+... ....+.... +..
T Consensus 94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-----~~piivv~NK~D~~~~--~~~~~~~~~-----~~~ 161 (195)
T d1svia_ 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPK--GKWDKHAKV-----VRQ 161 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred hHHhhhhccccchhhhhhhhhccccccccccccccccccc-----cCcceechhhccccCH--HHHHHHHHH-----HHH
Confidence 3344445566788999999999988998888888888763 2589999999998866 555555443 344
Q ss_pred HHHh-cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 173 ILQL-CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 173 ~~~~-~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.. ....+++ +||.++.|+++|+++|.+++
T Consensus 162 ~l~~~~~~~~~~------~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 162 TLNIDPEDELIL------FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHTCCTTSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HhcccCCCCEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 3332 2334444 67888999999999998876
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.86 E-value=2e-21 Score=154.42 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccC-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKA-----GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-----~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+.++|+++|++|+|||||+|+|++........ ...+.|.......+.+ .+..+.++||||.. .
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~-----------~ 71 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D 71 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCcccccccccccc-----------c
Confidence 35799999999999999999999854311111 1123444444555556 78899999999943 2
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+......++..+|++++|+|++++....+...+..+.. .+ .|+++|+||+|.... ......... +..+
T Consensus 72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~-~~----~p~iiv~NKiD~~~~--~~~~~~~~~-----~~~~ 139 (179)
T d1wb1a4 72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAGT--EEIKRTEMI-----MKSI 139 (179)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred cccchhhhhhhccccccccccccccchhhhhhhhhhhh-cC----CcceeccccccccCH--HHHHHHHHH-----HHHH
Confidence 44444455778899999999998888777777766655 22 489999999998865 333322221 2333
Q ss_pred HHhc----CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLC----DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~----~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+... ..++++ +||+++.|+++|++.|.+.+++
T Consensus 140 ~~~~~~~~~~~iv~------iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 140 LQSTHNLKNSSIIP------ISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp HHHSSSGGGCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCeEEE------EEccCCcCHHHHHHHHHhcCCc
Confidence 3322 234454 7999999999999999998865
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=9.7e-22 Score=157.15 Aligned_cols=175 Identities=18% Similarity=0.263 Sum_probs=111.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH-HHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF-VSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~-~~~~~~~~ 97 (311)
..++|+|+|++|+|||||+|+|+|........ ..++|.......+.+ ++..+.++||||+......... ........
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeecc-CCceeeeeccCCccccccccccccccchhHH
Confidence 35999999999999999999999987643332 345566666666666 8899999999998643211110 00001112
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+......+|+++||+|++.+.......++..+... ..|+++|+||+|........+.++... +...+..+
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-----~~~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~ 154 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 154 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc-----CCceeeeccchhhhcchhhhhhhHHHH-----HHHHhccc
Confidence 22233457999999999988888887777777653 248999999999876533334433322 22222222
Q ss_pred C-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 D-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+ .++++ +||+++.|+++|++.|.+.+..
T Consensus 155 ~~~~i~~------vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 155 DYSPLIF------TSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp TTSCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 2 23444 7889999999999999887654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=5.9e-21 Score=150.49 Aligned_cols=165 Identities=21% Similarity=0.254 Sum_probs=107.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+|+|++|+|||||+|+|+|...... ...++.|.......+.. .+..+.++||||+.+...... ...........
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~~~ 77 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDII--SQKMKEVTLNM 77 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCC--CHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccee-cccCceeeccccccccc-cccccccccccceeeeecccc--ccccccccccc
Confidence 689999999999999999999775222 23455666655555655 778899999999877532211 22223333344
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
+..+|+++++++.+++....+..++..+... + .|+++|+||+|+.+. ...+ . ...+.......+
T Consensus 78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~~~--~~~~--~-------~~~~~~~~~~~~ 141 (171)
T d1mkya1 78 IREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE--FERE--V-------KPELYSLGFGEP 141 (171)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH--HHHH--T-------HHHHGGGSSCSC
T ss_pred cccCcEEEEeecccccccccccccccccccc-c----ccccccchhhhhhhh--hhhH--H-------HHHHHhcCCCCe
Confidence 5778999999999878888888877777753 2 489999999997643 1111 1 111222212233
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
++ +||.++.|+++|+++|.+.+++.
T Consensus 142 i~------iSAk~g~gid~L~~~i~~~l~e~ 166 (171)
T d1mkya1 142 IP------VSAEHNINLDTMLETIIKKLEEK 166 (171)
T ss_dssp EE------CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EE------EecCCCCCHHHHHHHHHHhCCCC
Confidence 33 78999999999999999988763
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.6e-21 Score=150.90 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|++|||||||+|+|+|.+.... ...++++.......+.+ .+..+.++||||+.+..... ..........
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~---~~~~~~~~~~ 76 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIV-TDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEV---ERIGIERAWQ 76 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHH---HHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEe-ecccccccceEeeeeec-cCceeeeccccccccccccc---hhHHHHHHHH
Confidence 7999999999999999999999875322 23455666666666666 88899999999998754322 2223333344
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
++..+|+++|++|...+........+..+...... ..|+++|+||+|+.... ..+. +..+.+
T Consensus 77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~Dl~~~~-~~~~---------------~~~~~~ 138 (161)
T d2gj8a1 77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGET-LGMS---------------EVNGHA 138 (161)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCC-CEEE---------------EETTEE
T ss_pred HHHhccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhhhhhhH-HHHH---------------HhCCCc
Confidence 56778999999999866555555554444443332 36999999999976541 1111 011233
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+++ +||+++.|+++|++.|.+
T Consensus 139 ~~~------iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 139 LIR------LSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp EEE------CCTTTCTTHHHHHHHHHH
T ss_pred EEE------EECCCCCCHHHHHHHHHh
Confidence 444 789999999999999875
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.84 E-value=6.3e-20 Score=146.99 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=116.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc------c------c--ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA------F------M--SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~------~------~--~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
+.++|+++|+.++|||||+|+|++... + . ......|.|.......+.+ .++.++++||||+.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~-- 78 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-- 78 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH--
Confidence 458999999999999999999985210 0 0 0011246777877777888 889999999999543
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+.......+..+|++|+|+|+..++...+++.+..+..+.. +|+|+++||+|.+.+. ...+....+
T Consensus 79 ---------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~----~~iIv~iNK~D~~~~~-~~~~~i~~~ 144 (196)
T d1d2ea3 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV----EHVVVYVNKADAVQDS-EMVELVELE 144 (196)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC----CCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred ---------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcC----CcEEEEEecccccccH-HHHHHHHHH
Confidence 45555566788999999999998999888888877776433 4899999999988651 223323222
Q ss_pred cCCchHHHHHHhcCC-----cEEEecCCchhhhhhH----------HHHHHHHHHHHHHHH
Q 021534 165 ECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRT----------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~----------~~i~~l~~~i~~~~~ 210 (311)
++.++..++. ++.+ .|+.++ .++..|++.|.+.++
T Consensus 145 -----i~~~l~~~~~~~~~~pii~------iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 145 -----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp -----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHhCCCcccCEEEE------EEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 5566655442 2333 577666 588888888877653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=9.7e-21 Score=148.95 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=104.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||++++++........ +..+.......+.. .+ ..+.+|||||... +...
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~-----------~~~~ 70 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYR-NDKRIKLQIWDTAGQER-----------YRTI 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccc--cccccceeeEEEEe-ecceEEEEEEECCCchh-----------hHHH
Confidence 4799999999999999999998765422222 22233333333333 33 3788999999432 3444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++.+|++|+|+|++++-+... ..++..+...... ..|+++|.||+|.... ..+.. .....+...
T Consensus 71 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~--~~v~~-------~~~~~~~~~ 139 (169)
T d3raba_ 71 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDE--RVVSS-------ERGRQLADH 139 (169)
T ss_dssp HHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCS--CCEEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCC--cceEEEEEeecccccc--cccch-------hhhHHHHHH
Confidence 5567899999999999985433222 3334444443332 3489999999997644 22111 012334455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +||.++.|++++++.|.+.+.
T Consensus 140 ~~~~~~e------~Sak~g~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 140 LGFEFFE------ASAKDNINVKQTFERLVDVIC 167 (169)
T ss_dssp HTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCEEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 5666665 788999999999999887663
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.84 E-value=1e-20 Score=148.13 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=105.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|||||||+|+|.+... . ..++|.......+.. .+..+.+|||||. +.+.....
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~--~---~~~~t~~~~~~~~~~-~~~~~~~~D~~G~-----------~~~~~~~~ 64 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDV--D---TISPTLGFNIKTLEH-RGFKLNIWDVGGQ-----------KSLRSYWR 64 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCC--S---SCCCCSSEEEEEEEE-TTEEEEEEEECCS-----------HHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCC--C---cccceEeeeeeeccc-cccceeeeecCcc-----------hhhhhHHH
Confidence 48999999999999999999998764 1 234455566666666 8889999999993 33555566
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHH-HHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAA-IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~-l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.++..+|++++|+|+++..+..+ ... ...+.... ....|+++|.||+|+... ....+.... . .+...
T Consensus 65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~--~~~~~~~~~-~------~~~~~ 133 (165)
T d1ksha_ 65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER--LAGATLLIFANKQDLPGA--LSCNAIQEA-L------ELDSI 133 (165)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG--GTTCEEEEEEECTTSTTC--CCHHHHHHH-T------TGGGC
T ss_pred hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcc--cCCCceEEEEeccccccc--cCHHHHHHH-H------Hhhhh
Confidence 77889999999999885433333 222 22222111 123599999999998654 333322211 0 01111
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+.+.| ..+||.++.|+.+++++|.+.+.
T Consensus 134 ~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 134 RSHHWRI---QGCSAVTGEDLLPGIDWLLDDIS 163 (165)
T ss_dssp CSSCEEE---EECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCCEE---EEEECCCCCCHHHHHHHHHHHHH
Confidence 2211111 23788999999999999887653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=1.2e-21 Score=152.78 Aligned_cols=156 Identities=20% Similarity=0.286 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh--HHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP--EFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~--~~~~~~~~~~~ 98 (311)
++|+++|.||+|||||+|+|+|...... ...++.|.......+.. .+..+.++||||+....... ..........
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~- 77 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE- 77 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-eccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence 5899999999999999999999875322 23445666665666666 88899999999976432211 1111222222
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
+..+|+++||+|++++....+..+...+. ..++++++||.|.... ....+.. ..+. ..
T Consensus 78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~~-------~~~~i~~~~k~d~~~~--~~~~~~~---------~~~~-~~ 135 (160)
T d1xzpa2 78 ---IEKADIVLFVLDASSPLDEEDRKILERIK-------NKRYLVVINKVDVVEK--INEEEIK---------NKLG-TD 135 (160)
T ss_dssp ---HHHCSEEEEEEETTSCCCHHHHHHHHHHT-------TSSEEEEEEECSSCCC--CCHHHHH---------HHHT-CS
T ss_pred ---HHhCCEEEEEEeCCCCcchhhhhhhhhcc-------cccceeeeeeccccch--hhhHHHH---------HHhC-CC
Confidence 34569999999999777766655444332 2489999999998866 3332221 1111 13
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++++ +||+++.|+++|++.|.+
T Consensus 136 ~~~~~------vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 136 RHMVK------ISALKGEGLEKLEESIYR 158 (160)
T ss_dssp TTEEE------EEGGGTCCHHHHHHHHHH
T ss_pred CcEEE------EECCCCCCHHHHHHHHHh
Confidence 34444 789999999999998854
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7e-20 Score=144.22 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=106.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||++++++.... . ...++.+.......+.. .+. .+.+|||||.. .+...
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~-~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e-----------~~~~~ 70 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFP-P-GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQE-----------RFRSI 70 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-T-TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSG-----------GGHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC-C-cccccccceEEEEEEEE-CCEEEEEEEEECCCch-----------hhHHH
Confidence 379999999999999999999976642 2 22334455555555555 454 57889999943 24555
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++.++|++++|+|++++-+... ..++..+.+.... ..|+++|.||+|.........+ ....+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~ilvgnK~D~~~~~~v~~~---------~~~~~~~~ 139 (171)
T d2ew1a1 71 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQQ---------RAEEFSEA 139 (171)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCHH---------HHHHHHHH
T ss_pred HHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccc--cccEEEEEeecccccccchhhh---------HHHHHHHh
Confidence 6677899999999999985433322 3444555544333 3489999999997644111111 13344555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHH-HHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVN-SVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~-~~~~ 210 (311)
.+.+++. +||.++.|+++++..|. +++.
T Consensus 140 ~~~~~~~------~SAktg~gV~e~f~~l~~~l~~ 168 (171)
T d2ew1a1 140 QDMYYLE------TSAKESDNVEKLFLDLACRLIS 168 (171)
T ss_dssp HTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCEEEE------EccCCCCCHHHHHHHHHHHHHH
Confidence 5666665 79999999999977654 4443
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=8.3e-20 Score=147.52 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=97.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc----------ccCC-----CCCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM----------SKAG-----SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~----------~~~~-----~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
+.++|+++|++++|||||+++|++..... .... ..+.|.......+.+ ++..++|+||||+.++
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 80 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence 45899999999999999999997431100 0000 026788888888888 8999999999998874
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
..-....+..+|++|+|+|+.+++...+.+.+..+... |- +++++++||||.++.. ..+++...
T Consensus 81 -----------~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~~~~-~~~~~~~~ 144 (204)
T d2c78a3 81 -----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVDDP-ELLDLVEM 144 (204)
T ss_dssp -----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCCCH-HHHHHHHH
T ss_pred -----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEEecccCCCH-HHHHHHHH
Confidence 22223345678999999999989999998888877764 31 3588889999987641 23444443
Q ss_pred hcCCchHHHHHHhc
Q 021534 164 RECPKPLKEILQLC 177 (311)
Q Consensus 164 ~~~~~~~~~~~~~~ 177 (311)
+ +...+...
T Consensus 145 ~-----i~~~l~~~ 153 (204)
T d2c78a3 145 E-----VRDLLNQY 153 (204)
T ss_dssp H-----HHHHHHHT
T ss_pred H-----HHHHHHhc
Confidence 3 55555543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.82 E-value=1.9e-20 Score=148.10 Aligned_cols=165 Identities=17% Similarity=0.126 Sum_probs=103.4
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHH
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
+..+++..++|+++|.+|||||||+|+|.+...... . .+.......+.. .+..+.++||||...
T Consensus 9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~----~~~~~~~~~i~~-~~~~~~i~d~~g~~~---------- 72 (176)
T d1fzqa_ 9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-T----PTQGFNIKSVQS-QGFKLNVWDIGGQRK---------- 72 (176)
T ss_dssp CSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-E----EETTEEEEEEEE-TTEEEEEEECSSCGG----------
T ss_pred hhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-e----eeeeeeEEEecc-CCeeEeEeecccccc----------
Confidence 345566789999999999999999999998764211 1 122233444555 678999999999543
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+...+..++..+|++++|+|+++..+..+ ...+..+..... ....|+++|.||+|+... ......... +.
T Consensus 73 -~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~--~~~~~~~~~-----~~ 143 (176)
T d1fzqa_ 73 -IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-----LN 143 (176)
T ss_dssp -GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT
T ss_pred -chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc--ccHHHHHHH-----HH
Confidence 33444555788999999999985544333 222222222111 123599999999998765 332222111 00
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
......+.+.| ..+||.++.|+++++++|.+
T Consensus 144 --~~~~~~~~~~~---~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 144 --LHTIRDRVWQI---QSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp --GGGCCSSCEEE---EECCTTTCTTHHHHHHHHHH
T ss_pred --HHHHHhcCCEE---EEEeCCCCCCHHHHHHHHHh
Confidence 01112221111 12788999999999999865
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.82 E-value=1.1e-20 Score=155.70 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE------------------EEEeeCCceEEEEeCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ------------------RTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~------------------~~~~~~~~~l~liDTPG~~~ 82 (311)
+.|+|+|++++|||||+|+|++..... ....+.|...... .+.+ .+..++++||||+.+
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~ 82 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA 82 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchh--eecCceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence 559999999999999999999865321 1111222111111 1223 566899999999877
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+... ...++..+|++|+|+|+.++++..+...+..+... ..|+|+|+||+|+...
T Consensus 83 f~~~-----------~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIHG 137 (227)
T ss_dssp CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSTT
T ss_pred cccc-----------chhcccccceEEEEEecccCcccchhHHHHHhhcC-----CCeEEEEEECccCCCc
Confidence 4321 22346778999999999989999999888888763 2599999999998754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=5.7e-20 Score=144.34 Aligned_cols=157 Identities=18% Similarity=0.090 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|.+|+|||||++++.+... ....+. +.......+.+ ++ ..+.+|||||... +....
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~--~~~~~~--~~~~~~~~i~~-~~~~~~l~i~D~~g~e~-----------~~~~~ 65 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVED--GPEAEA--AGHTYDRSIVV-DGEEASLMVYDIWEQDG-----------GRWLP 65 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-------------CEEEEEEEEE-TTEEEEEEEEECC------------------CH
T ss_pred eEEEEECCCCcCHHHHHHHHhCCcc--CCcCCe--eeeeecceeec-cccccceeeeecccccc-----------cceec
Confidence 6899999999999999999998754 111111 11122223344 44 3788999999543 22233
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++|+|+|++++-+-.. ..++..+....+. ...|+++|.||+|+... ..+.. .....+....
T Consensus 66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~--~~v~~-------~~~~~~~~~~ 135 (168)
T d2gjsa1 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRS--REVSV-------DEGRACAVVF 135 (168)
T ss_dssp HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGG--CCSCH-------HHHHHHHHHH
T ss_pred ccchhhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhh--cchhH-------HHHHHHHHhc
Confidence 445788999999999985544433 3455555554432 33589999999997654 22111 1124445555
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +||.++.|+++++..|.+.+
T Consensus 136 ~~~~~e------~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 136 DCKFIE------TSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp TSEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCcCHHHHHHHHHHHH
Confidence 766665 78999999999999887654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=7e-21 Score=151.98 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|+||||||||+|+|+|... ......++|+........+.++..+.+|||||+.........+...+...
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~--- 76 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH--- 76 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC--EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH---
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCC--ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHH---
Confidence 3699999999999999999999876 33445666666666666664667899999999743222222222223222
Q ss_pred ccCCccEEEEEEECCC--CCChhH-HHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 101 AKDGIHAVLLVFSIRN--RFSKEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~--~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++.++++++... .....+ .............. ..+|+++|+||+|+.+. ... +..+...
T Consensus 77 -~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~-----------~~~~~~~ 142 (185)
T d1lnza2 77 -IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEK 142 (185)
T ss_dssp -HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHH
T ss_pred -HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHH-----------HHHHHHH
Confidence 234588888887652 222222 12222222222222 34689999999998754 211 1122222
Q ss_pred c--CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 C--DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~--~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
. +.+++ .+||.++.|+++|++.|.+.+++
T Consensus 143 ~~~~~~v~------~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 143 LTDDYPVF------PISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp CCSCCCBC------CCSSCCSSTTHHHHHHHHHHHTS
T ss_pred hccCCcEE------EEECCCCCCHHHHHHHHHHhhhh
Confidence 2 23333 37899999999999999998864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.9e-19 Score=141.05 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|.+|+|||||++++++.... ...++..+.......+.. ++. .+.+|||||.... ....
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~~ 70 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERF-----------RAVT 70 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGT-----------CHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--CcccccccccceeEEEEE-CCEEEEEEEeccCCchhH-----------HHHH
Confidence 79999999999999999999977642 222333444444444555 444 7889999995432 1222
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+..+|++|+|+|++++-+-.. ..++..+.+.... ..|++++.||+|+........+ ....+....
T Consensus 71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~~~~~---------~~~~~~~~~ 139 (166)
T d1z0fa1 71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTYE---------EAKQFAEEN 139 (166)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccc--cceEEEEcccccchhhcccHHH---------HHHHHHHHc
Confidence 233567899999999984433322 3455556555443 3489999999997543111111 134455555
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +||.++.|+++++..|.+.+
T Consensus 140 ~~~~~e------~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 140 GLLFLE------ASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp TCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 666665 89999999999998886543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.1e-19 Score=141.77 Aligned_cols=165 Identities=19% Similarity=0.155 Sum_probs=106.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
|+...++|+|+|.+|||||||++++++... ..... +++.......+.+ ++. .+.+|||||........
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f-~~~~~--~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~------ 71 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYD--PTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR------ 71 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH------
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCC-Ccccc--cccccceeeEecc-CCeeeeeecccccccccccccc------
Confidence 455679999999999999999999987653 22222 2222333344444 444 67889999987643221
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..++..+|++|+|+|++++-+... ..++..+.+..+. ...|+++|.||+|+........+ ....
T Consensus 72 -----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~---------~~~~ 136 (173)
T d2fn4a1 72 -----EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVPRS---------EASA 136 (173)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSCHH---------HHHH
T ss_pred -----chhhccceeeeeecccccccccchhhhhhHHHHHHhcc-CCCceEEEEEeechhhccccchh---------hhhH
Confidence 112345699999999985543333 3444445444432 22489999999997643111111 1344
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +||.++.|++++++.+.+.+.+
T Consensus 137 ~~~~~~~~~~e------~Sak~g~gv~e~f~~l~~~i~k 169 (173)
T d2fn4a1 137 FGASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRK 169 (173)
T ss_dssp HHHHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence 55555666554 7899999999999999887654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=9.4e-20 Score=142.45 Aligned_cols=159 Identities=16% Similarity=0.096 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|.+|||||||+|++++.... .. ..++.+.......... ++ ..+.+|||||.... ....
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~~ 66 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFD-NT-YQATIGIDFLSKTMYL-EDRTIRLQLWDTAGQERF-----------RSLI 66 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC-SS-CCCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGG-----------GGGH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCC-Cc-cccceeeeccceeecc-CCCceeeeecccCCcchh-----------ccch
Confidence 58999999999999999999977642 22 2223333333333333 33 37889999996542 2223
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++.+... ..++..+....+.. .|+++|.||+|+........+ ....+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~---------~~~~~~~~~ 135 (164)
T d1yzqa1 67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIE---------EGERKAKEL 135 (164)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchhhhhhhhHH---------HHHHHHHHc
Confidence 344778899999999985544333 45555555555443 489999999997644212221 134455656
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..++. +||.++.|+++++..|.+.++
T Consensus 136 ~~~~~e------~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 136 NVMFIE------TSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp TCEEEE------CCTTTCTTHHHHHHHHHHHSC
T ss_pred CCEEEE------ecCCCCcCHHHHHHHHHHhhC
Confidence 666665 799999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=1.2e-19 Score=143.09 Aligned_cols=160 Identities=17% Similarity=0.123 Sum_probs=85.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+++|++... +. ...+..+.......+.. ++. .+.+|||||... +...
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~-----------~~~~ 71 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAF-NS-TFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTI 71 (173)
T ss_dssp EEEEEEECCCCC------------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CC-ccCccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHH
Confidence 47899999999999999999997653 11 11223334444555555 443 677899999443 4445
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++.++|++|+|+|++++.+... ..++..+...... ..|+++|.||.|..........+ .......
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~D~~~~~~~~~~~---------~~~~~~~ 140 (173)
T d2fu5c1 72 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKER---------GEKLALD 140 (173)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHHH---------HHHHHHH
T ss_pred HHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccC--CceEEEEEecccchhhcccHHHH---------HHHHHHh
Confidence 5667889999999999986554433 3344455444433 35899999999987542122211 2334445
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +|+.++.|+++++.+|.+.+.
T Consensus 141 ~~~~~~e------~Sa~~g~gv~e~f~~l~~~i~ 168 (173)
T d2fu5c1 141 YGIKFME------TSAKANINVENAFFTLARDIK 168 (173)
T ss_dssp HTCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 5677665 788999999999999887654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=3.2e-20 Score=145.21 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+||+|+|.+|+|||||+|++++.... .... +............. .+ ..+.+|||||....... .
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~-~~~~-~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~-----------~ 68 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFT-KDYK-KTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAI-----------T 68 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CCSS-CCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCC-----------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-cccc-cccccccceeeeee-cCceeeeeeeccCCccchhhh-----------h
Confidence 78999999999999999999865532 2211 22222222233333 33 37899999996654321 1
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+-.. ..++..+.+..+. .|+++|.||+|+... ..+.. .....+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~--~~v~~-------~~~~~~~~~~ 136 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDD--SCIKN-------EEAEGLAKRL 136 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGG--CSSCH-------HHHHHHHHHH
T ss_pred hhhhccCceEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccc--eeeee-------hhhHHHHHHc
Confidence 223668899999999985544333 3455666665543 589999999998654 22211 1134455666
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+.+++. +||.++.|++++++.|.+.
T Consensus 137 ~~~~~e------~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 137 KLRFYR------TSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp TCEEEE------CBTTTTBSSHHHHHHHHHH
T ss_pred CCEEEE------eccCCCcCHHHHHHHHHHH
Confidence 766665 7899999999999887653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.9e-20 Score=143.49 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE--EEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ--RTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~--~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.++|+|+|.+|+|||||++++++.... .. ..+|...... .+.. ++ ..+.+||||| .....
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~-~~---~~~Ti~~~~~~~~~~~-~~~~~~l~i~D~~g-----------~~~~~ 66 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHT-NRGPIKFNVWDTAG-----------QEKFG 66 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC------CC---EEEETTEEEEEEEECB-TTCCEEEEEEECTT-----------HHHHS
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCC-cc---cccceecccccccccc-cccccccccccccc-----------ccccc
Confidence 379999999999999999999876642 11 1123322222 2222 33 3799999999 23344
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++.++|++++|+|++++-+-.. ..++..+.+... ..|+++|.||+|+... ....+ .....
T Consensus 67 ~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~--~~~~~---------~~~~~ 132 (170)
T d1i2ma_ 67 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR--KVKAK---------SIVFH 132 (170)
T ss_dssp SCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC---SCCEEEEEECCCCSCS--CCTTT---------SHHHH
T ss_pred eecchhcccccchhhccccccccccchhHHHHHHHhhccC---CCceeeecchhhhhhh--hhhhH---------HHHHH
Confidence 445667889999999999985544332 344455555443 2599999999997654 22111 12333
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+.+++. +||.++.|+++++..|.+.+..
T Consensus 133 ~~~~~~~~e------~Sak~~~~v~e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 133 RKKNLQYYD------ISAKSNYNFEKPFLWLARKLIG 163 (170)
T ss_dssp SSCSSEEEE------EBTTTTBTTTHHHHHHHHHHHT
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHcc
Confidence 444555554 7889999999999998875543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3e-19 Score=143.53 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=104.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.++|+|+|.+|||||||+|++++... +.... ++.+.......+... ....+.||||||..... ..+
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~-~~~~~-~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~-----------~~~ 72 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYI-STIGVDFKIKTVELDGKTVKLQIWDTAGQERFR-----------TIT 72 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CTTCC-CSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT-----------CCC
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCC-CCCcC-CccceeEEEEEEEEeeEEEEEEEEECCCchhhH-----------HHH
Confidence 47999999999999999999987653 22222 222222333333331 22378899999966532 223
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++|+|+|.+++.+... ..+...+.+.... ..|+++|.||+|+.+......++ ........
T Consensus 73 ~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~ 141 (194)
T d2bcgy1 73 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYDV---------AKEFADAN 141 (194)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHH---------HHHHHHHT
T ss_pred HHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccC--CceEEEEEeccccccccchhHHH---------Hhhhhhcc
Confidence 456788999999999985444333 3344445444433 35999999999987552122111 23334444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..++. +||.++.|+++++..|.+.+.+
T Consensus 142 ~~~~~e------~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 142 KMPFLE------TSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp TCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcceEE------EecCcCccHHHHHHHHHHHHHH
Confidence 666655 7889999999999988876544
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.9e-19 Score=140.58 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=102.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
.++|+|+|.+|+|||||++++++... +.... +|.... ...... ++. .+.+|||||.... ..
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f-~~~~~---~T~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~-----------~~ 65 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTF-RESYI---PTVEDTYRQVISC-DKSICTLQITDTTGSHQF-----------PA 65 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC-CSSCC---CCSCEEEEEEEEE-TTEEEEEEEEECCSCSSC-----------HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCC-CCccC---cceeeccccceee-ccccceeccccccccccc-----------cc
Confidence 58999999999999999999998663 22111 222222 222233 444 6778999996652 11
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++-+... ..++..+.+..+.....|+++|.||+|+... ..+.. .....+..
T Consensus 66 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--~~v~~-------~e~~~~~~ 136 (171)
T d2erxa1 66 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQS-------SEAEALAR 136 (171)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCH-------HHHHHHHH
T ss_pred cccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc--ccccH-------HHHHHHHH
Confidence 22233556799999999985433333 4555556655554445699999999997544 22211 11344555
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+.+++. +||.++.|+++++..|.+++
T Consensus 137 ~~~~~~~e------~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 137 TWKCAFME------TSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp HHTCEEEE------CBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence 55666655 78999999999999888765
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.80 E-value=9.8e-20 Score=142.38 Aligned_cols=159 Identities=15% Similarity=0.103 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+++|+++|++|+|||||+|+|.+..... . ..+|.......+.. ++..+.+|||||.. .+...+.
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~--~--~~~T~~~~~~~~~~-~~~~~~i~D~~G~~-----------~~~~~~~ 65 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNE--D--MIPTVGFNMRKITK-GNVTIKLWDIGGQP-----------RFRSMWE 65 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC--S--CCCCCSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTTHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC--c--ccccceeeeeeeee-eeEEEEEeeccccc-----------ccccccc
Confidence 5899999999999999999998766421 1 22355556666666 78899999999932 2333344
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHH-HHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIH-ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.++..+|++++|+|++++-+-.. ...+. .+..... ...|+++|.||.|+... ....+.... .. ...+...
T Consensus 66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~lv~nK~Dl~~~--~~~~~i~~~-~~---~~~~~~~ 137 (164)
T d1zd9a1 66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL--QGIPVLVLGNKRDLPGA--LDEKELIEK-MN---LSAIQDR 137 (164)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCCEEEEEECTTSTTC--CCHHHHHHH-TT---GGGCCSS
T ss_pred ccccccchhhcccccccccccchhhhhhhhhhhhhcc--cCCcEEEEEeccccchh--hhHHHHHHH-HH---HHHHHhC
Confidence 45788999999999984433222 22222 2222111 23599999999997654 222222221 00 0001111
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++ .+|+.++.|+++++++|.+.
T Consensus 138 ~~~~~------e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 138 EICCY------SISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp CEEEE------ECCTTTCTTHHHHHHHHHHT
T ss_pred CCEEE------EEeCcCCcCHHHHHHHHHHc
Confidence 22233 36888899999999998763
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.80 E-value=6.4e-20 Score=144.74 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=101.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.+.++|+++|.+|||||||++++.+.... . ...|.......... ....+.+|||||... ...
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-----------~~~ 71 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRP 71 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCE-E----EEEETTEEEEEEEE-TTEEEEEEEESCCGG-----------GHH
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCC-C----ccceeeeeEEEeec-cceeeEEecCCCcch-----------hhh
Confidence 356799999999999999999999876532 1 22344444555555 778999999999654 334
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHH-HHHHHhCCCccCeEEEEEeccCCCCCC-hhcHHHHhhhcCCchHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIH-ILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~ 173 (311)
.+..++..+|+++||+|++..-+... ...+. .+.... ....|+++|+||+|+.... ...+...+.
T Consensus 72 ~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~--~~~~piiiv~NK~Dl~~~~~~~~i~~~~~---------- 139 (173)
T d1e0sa_ 72 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE--MRDAIILIFANKQDLPDAMKPHEIQEKLG---------- 139 (173)
T ss_dssp HHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG--GTTCEEEEEEECTTSTTCCCHHHHHHHTT----------
T ss_pred HHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcc--cccceeeeeeecccccccccHHHHHHHHH----------
Confidence 55667899999999999984333222 22222 222111 1235999999999976541 112222111
Q ss_pred HHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 174 LQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 174 ~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..+.. .+.. ..+||.++.|+++++++|.+.
T Consensus 140 ~~~~~~~~~~~----~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 140 LTRIRDRNWYV----QPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp GGGCCSSCEEE----EECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHhCCCEE----EEeeCCCCcCHHHHHHHHHHh
Confidence 111111 2222 237899999999999999764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3.3e-19 Score=140.80 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+|+|.+|||||||+|++++.........+.+.+...............+.+|||||..+ ......
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~ 70 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLGV 70 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-----------hhhHHH
Confidence 479999999999999999999876642222222222222222111110223688999999543 333455
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
.++..+|++++|+|.+++.+-.. ..++..+....... ...|+++|+||+|+.... ..+.. .....+...
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~-~~v~~-------~~~~~~~~~ 142 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSE-------KSAQELAKS 142 (175)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCH-------HHHHHHHHH
T ss_pred HHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhh-cchhH-------HHHHHHHHH
Confidence 66889999999999985544333 44555555544322 235899999999976431 11111 113444555
Q ss_pred cC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+ ..++. +||.++.|+++++..|.+.+
T Consensus 143 ~~~~~~~e------~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 143 LGDIPLFL------TSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp TTSCCEEE------EBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCeEEE------EeCCCCcCHHHHHHHHHHHH
Confidence 54 34554 78999999999999887543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.4e-19 Score=140.59 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+||+|+|.+|||||||+|++++.... .... +..........+.. ++ ..+.+|||||... +...
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~-~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~ 70 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSN-HTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRSV 70 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCC-CCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC-cccc-cccccceeeEEEEe-cCcceeEEEEECCCchh-----------hhhh
Confidence 379999999999999999999876542 2222 22222222222222 22 3788999999443 4444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++++|+|.+++-+... ..++..+....+. ..|+++|.||+|+.... ..... ....+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~~~-~~~~~--------~~~~~~~~ 139 (174)
T d2bmea1 71 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADR-EVTFL--------EASRFAQE 139 (174)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGC-CSCHH--------HHHHHHHH
T ss_pred HHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCC--ceEEEEEEecccccchh-chhhh--------HHHHHHHh
Confidence 5667889999999999984433222 3444445444443 35999999999965431 11111 12344445
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +||.++.|+++++..+.+.+
T Consensus 140 ~~~~~~e------~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 140 NELMFLE------TSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEE------eeCCCCcCHHHHHHHHHHHH
Confidence 5656655 78889999999998876654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.5e-19 Score=140.68 Aligned_cols=159 Identities=15% Similarity=0.150 Sum_probs=103.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|||||||+|++++...... ..++.+.......+.. ++. .+.||||||..+... .
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~-----------~ 69 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------I 69 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------C
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceeeeEEEEE-CCEEEEEEecccCCcHHHHH-----------H
Confidence 48999999999999999999988764222 2223333444444444 443 788999999544321 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....+..+|++|+|+|.+++-+-.. ..++..+.+..+.+ .|+++|.||+|+.......... .......
T Consensus 70 ~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~~~~~~~~~---------~~~~~~~ 138 (175)
T d2f9la1 70 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 138 (175)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeecccccccchHHH---------HHHhhcc
Confidence 2233577899999999985433332 45566666666543 4999999999976431111111 2333344
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +||.++.|+++++..+.+.+
T Consensus 139 ~~~~~~e------~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 139 NNLSFIE------TSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred cCceEEE------EecCCCcCHHHHHHHHHHHH
Confidence 4566665 78889999999988766543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=6.6e-19 Score=137.99 Aligned_cols=158 Identities=14% Similarity=0.123 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|.+|||||||++++++.... ... .+............. ++ ..+.+|||+|... .....
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~-~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~-----------~~~~~ 69 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFN-DKH-ITTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHALG 69 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCC-SSC-CCCCSCEEEEEEEES-SSCEEEEEEEECCCC------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-ccc-ccccccchheeeecc-CCccceeeeeccCCcce-----------ecccc
Confidence 79999999999999999999876642 222 222222333333333 33 4888999999554 33345
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++|+|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.. .....+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~~ilvgnK~Dl~~~--~~v~~-------~e~~~~a~~~ 138 (167)
T d1z08a1 70 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKE--RHVSI-------QEAESYAESV 138 (167)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGG--CCSCH-------HHHHHHHHHT
T ss_pred hhhccCCceeEEEEeCCchhHHHhhhhhhhhccccccc--ccceeeeccccccccc--cccch-------HHHHHHHHHc
Confidence 567889999999999985544333 3444445444433 2489999999997654 22211 1134556666
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +||.++.|+++++..|.+.+
T Consensus 139 ~~~~~e------~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 139 GAKHYH------TSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp TCEEEE------EBTTTTBSHHHHHHHHHHHH
T ss_pred CCeEEE------EecCCCcCHHHHHHHHHHHH
Confidence 766655 78899999999999887654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.79 E-value=9.2e-20 Score=145.00 Aligned_cols=165 Identities=16% Similarity=0.100 Sum_probs=102.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.....++|+++|.+|||||||++++.+.... ... +|.......... .+..+.+|||||.... .
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~ 75 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTK----PTIGFNVETLSY-KNLKLNVWDLGGQTSI-----------R 75 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EEC----SSTTCCEEEEEE-TTEEEEEEEEC----C-----------C
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccc----cccceEEEEEee-CCEEEEEEeccccccc-----------c
Confidence 3556799999999999999999999877642 211 233333444555 7889999999996542 2
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
..+..++..+|+++||+|++++.+..+ ....+...... ....|+++|.||+|+... ....+...... +. .
T Consensus 76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~---~~-~ 147 (182)
T d1moza_ 76 PYWRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELN---LV-E 147 (182)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTT---TT-T
T ss_pred hhHHhhhccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHH---HH-H
Confidence 334556788999999999985554433 22223332221 123599999999998654 22222111100 00 0
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+..++ .+||.++.|+++++++|.+.+.+
T Consensus 148 ~~~~~~~~~------e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 148 LKDRSWSIV------ASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp CCSSCEEEE------EEBGGGTBTHHHHHHHHHHHHHH
T ss_pred HhhCCCEEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 011112233 37999999999999999887754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.7e-18 Score=136.07 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|||||||++++++.... .....+..+.......+.. .+. .+.+|||||... +...
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~ 72 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFL-AGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRSV 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC-cccccceeeeeeEEEEEEe-cCcEEEEEEEECCCchh-----------hHHH
Confidence 379999999999999999999876532 2222233333444444444 454 788999999543 3344
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|.+++-+... ..++..+.+..+. ..|+++|.||+|.... ..+... ....+...
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~d~~~~--~~v~~~-------~~~~~~~~ 141 (170)
T d2g6ba1 73 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHE--RVVKRE-------DGEKLAKE 141 (170)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSC--CCSCHH-------HHHHHHHH
T ss_pred HHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCC--CceEEEEEeeechhhc--ccccHH-------HHHHHHHH
Confidence 5566788999999999985443332 2333333333332 3589999999997765 222111 13445566
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +||.++.|+++++..|.+.+
T Consensus 142 ~~~~~~e------~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 142 YGLPFME------TSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp HTCCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEE------EeCCCCcCHHHHHHHHHHHc
Confidence 6777766 78899999999999887654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.79 E-value=1.5e-18 Score=139.36 Aligned_cols=165 Identities=15% Similarity=0.229 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccc-CCCCCcceeEEEEEEEee----------------------CCceEEE
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSK-AGSSGVTKTCEMQRTMLK----------------------AGQVVNV 74 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-~~~~~~T~~~~~~~~~~~----------------------~~~~l~l 74 (311)
.+.++|+++|+.++|||||+|+|+|...-... ....+.|.........+. ....+++
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 35689999999999999999999985321111 111233332222211110 1235899
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 75 IDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 75 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+||||. ..+..........+|++++|+|+..+. .....+.+..+... +. .++++++||+|..+.
T Consensus 83 iDtPGh-----------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d~ 147 (195)
T d1kk1a3 83 IDAPGH-----------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK 147 (195)
T ss_dssp EECSSH-----------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred eccchh-----------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchhh
Confidence 999994 335555555567789999999998664 44445666555553 32 368999999998865
Q ss_pred ChhcHHHHhhhcCCchHHHHHHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 154 NDETLEDYLGRECPKPLKEILQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
......... +...+...+ .++++ .||.++.|+++|++.|.+.+|
T Consensus 148 --~~~~~~~~~-----~~~~~~~~~~~~~~iIp------iSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 148 --EKALENYRQ-----IKEFIEGTVAENAPIIP------ISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp --HHHHHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSC
T ss_pred --HHHHHHHHH-----HHHHhccccCCCCeEEE------EECCCCCCHHHHHHHHHHHCc
Confidence 333322222 445554433 23444 799999999999999988653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.9e-19 Score=139.21 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=103.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
+++|+|+|.+|||||||+|++++.... ... .+......... +.. .+ ..+.+||+||.... ...
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~-~~~-~~~~~~~~~~~-~~~-~~~~~~l~~~d~~~~~~~-----------~~~ 67 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEY-DPTIEDSYRKQ-VVI-DGETCLLDILDTAGQEEY-----------SAM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-CSC-CCCSEEEEEEE-EEE-TTEEEEEEEEEECCCGGG-----------HHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-Ccc-CCccceeeccc-eee-eceeeeeeeeeccCcccc-----------ccc
Confidence 489999999999999999999987642 211 12222222222 222 33 37889999996642 112
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....+..++++++|+|++++.+... ..++..+.+..+. ...|+++|.||+|+... ....+. ...+...
T Consensus 68 ~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (166)
T d1ctqa_ 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVESRQ--------AQDLARS 136 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred hhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEecccccccc--cccHHH--------HHHHHHH
Confidence 2233556799999999985544333 4566666665543 23589999999997644 211111 3344555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+++. +||.++.|+++++..|.+.+.+
T Consensus 137 ~~~~~~e------~Sak~g~gi~e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 137 YGIPYIE------TSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp HTCCEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred hCCeEEE------EcCCCCcCHHHHHHHHHHHHHh
Confidence 5666665 8999999999999999876643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=2.8e-19 Score=140.16 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|||||||+|++.+...... . .+............. ++ ..+.+|||||.... ...
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~ 69 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN-I-NPTIGASFMTKTVQY-QNELHKFLIWDTAGLERF-----------RAL 69 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT-C-CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcc-c-ccccccccccccccc-cccccceeeeecCCchhh-----------hHH
Confidence 48999999999999999999997764221 1 111222222222222 32 26779999996542 222
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.. .....+...
T Consensus 70 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~--~~v~~-------~~~~~~~~~ 138 (167)
T d1z0ja1 70 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDV--REVME-------RDAKDYADS 138 (167)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred HHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCC--cceEEEecccchhccc--cchhH-------HHHHHHHHH
Confidence 3344778899999999984433333 3334444444443 3599999999997643 12111 113455566
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +||.++.|+++++..|.+.+
T Consensus 139 ~~~~~~e------~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 139 IHAIFVE------TSAKNAININELFIEISRRI 165 (167)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred cCCEEEE------EecCCCCCHHHHHHHHHHhC
Confidence 6666655 79999999999999887654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.3e-18 Score=136.21 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|||||||+|++++.... ....+ +........... ++ ..+.+|||||.... ...
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~--t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~-----------~~~ 67 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFI-EKYDP--TIEDFYRKEIEV-DSSPSVLEILDTAGTEQF-----------ASM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------HHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCC-CccCC--ceeeeeeeeeec-CcceEeeccccCCCcccc-----------ccc
Confidence 489999999999999999999976642 22211 111222222333 33 37888999996542 111
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++.++|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|+......... ....+...
T Consensus 68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T d1kaoa_ 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSS---------EGRALAEE 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccC-CCCCEEEEEEccchhhcccchHH---------HHHHHHHH
Confidence 2223556799999999985544333 3334444443332 33589999999997644111111 12334455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +||.++.|+++++..|.+.+
T Consensus 138 ~~~~~~e------~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 138 WGCPFME------TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp HTSCEEE------ECTTCHHHHHHHHHHHHHHH
T ss_pred cCCeEEE------ECCCCCcCHHHHHHHHHHHH
Confidence 5666665 79999999999999887654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.8e-19 Score=141.71 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=103.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|||||||++++++... +.... +..+.......... .+ ..+.+|||||... +...
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f-~~~~~-~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~-----------~~~~ 71 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQF-HEFQE-STIGAAFLTQTVCL-DDTTVKFEIWDTAGQER-----------YHSL 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCC-CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GGGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-Ccccc-cccccccccceeec-cceEEEEEeccCCCchh-----------hhhh
Confidence 47999999999999999999997653 22222 22222333333333 32 3788999999543 2222
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++.++|++++|+|.+++.+... ..+...+.+...++ .|+++|.||+|+... ..+.. .....+...
T Consensus 72 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~-------e~~~~~~~~ 140 (170)
T d1r2qa_ 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANK--RAVDF-------QEAQSYADD 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred HHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeeccccccccc--ccccH-------HHHHHHHHh
Confidence 3334778999999999984433332 34445555544443 489999999997644 22211 113445555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +||.++.|+++++..|.+.+
T Consensus 141 ~~~~~~e------~SAk~g~~V~e~f~~l~~~i 167 (170)
T d1r2qa_ 141 NSLLFME------TSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHTS
T ss_pred cCCEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 5666665 89999999999999987654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.2e-19 Score=140.61 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------CCceEEEEeCCCCCCCCCChH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------AGQVVNVIDTPGLFDSSADPE 88 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------~~~~l~liDTPG~~~~~~~~~ 88 (311)
.++|+|+|.+|||||||+|++++...... ..+..+.......+... ....+.+|||||
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G--------- 73 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPK--FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--------- 73 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE--EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES---------
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCc--cCCcccceeeEEEEEEecccccccccccceEEeccccCCc---------
Confidence 48999999999999999999998764211 11122222222222221 113689999999
Q ss_pred HHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 89 FVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 89 ~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
.+.+...+..++.++|++|+|+|++++.+... +..++...... ....|+++|.||+|+... ..+..
T Consensus 74 --~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~v~~------ 141 (186)
T d2f7sa1 74 --QERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE------ 141 (186)
T ss_dssp --HHHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH------
T ss_pred --chhhHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhh--hcchH------
Confidence 34455566666889999999999984332222 22233322211 223489999999997644 22211
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.....+...++.+++. +||.++.|++++++.+.+.+.
T Consensus 142 -~e~~~~~~~~~~~~~e------~Sak~~~~i~e~f~~l~~~i~ 178 (186)
T d2f7sa1 142 -RQARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM 178 (186)
T ss_dssp -HHHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 1134556666777665 788999999999999887653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.9e-18 Score=135.36 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+.++|+|+|.+|+|||||+|++++... +.... +|.... ...+.+ ++. .+.+|||||.......
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f-~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~--------- 68 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYD---PTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIF--------- 68 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC-CSCCC---SSCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCC---------
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCC-CcccC---cceecccceEEec-CcEEEEeeecccccccccccc---------
Confidence 358999999999999999999987653 22211 122222 223334 443 7788999997764321
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
....+..+|++|+|+|++++-+-.. ..++..+.+..+. ...|+++|.||+|+... ..+.. .....+.
T Consensus 69 --~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~--r~v~~-------~~~~~~a 136 (167)
T d1xtqa1 69 --PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHME--RVISY-------EEGKALA 136 (167)
T ss_dssp --CGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCS-SCCCEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred --cchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccc-cccceeeeccccccccc--cchhH-------HHHHHHH
Confidence 2234678999999999985544333 3455556655554 23599999999997644 22111 1134455
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+..++. +||.++.|+++++..|...+
T Consensus 137 ~~~~~~~~e------~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 137 ESWNAAFLE------SSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp HHHTCEEEE------CCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------EecCCCCCHHHHHHHHHHHh
Confidence 556666655 79999999999998876543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.3e-19 Score=140.43 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=104.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.+||+|+|.+|+|||||+|++++.... . ...+..+.......+.. ++. .+.||||||..+...
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 71 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFD-P-ELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRT----------- 71 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-T-TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCC-----------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCC-C-ccccceeecceeEEEEE-eccccEEEEEECCCchhhHH-----------
Confidence 3489999999999999999999987642 2 22233344444444444 433 789999999655321
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++.++|++++|+|++++-+... ..++..+.+.. .....|++++.||.|.... ..... ....+..
T Consensus 72 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~i~~~~nk~d~~~~--~v~~~--------~~~~~~~ 140 (177)
T d1x3sa1 72 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKENR--EVDRN--------EGLKFAR 140 (177)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSSC--CSCHH--------HHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccc-cccceeeEEEeeccccccc--cccHH--------HHHHHHH
Confidence 12234678899999999884433222 33333333322 2344689999999997644 21111 1344555
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|++++++.+.+.+.+
T Consensus 141 ~~~~~~~e------~Sa~tg~gv~e~f~~l~~~l~~ 170 (177)
T d1x3sa1 141 KHSMLFIE------ASAKTCDGVQCAFEELVEKIIQ 170 (177)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HCCCEEEE------EeCCCCCCHHHHHHHHHHHHcc
Confidence 56666655 7889999999999988765544
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.2e-18 Score=136.94 Aligned_cols=162 Identities=18% Similarity=0.140 Sum_probs=101.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|||||||++++++... ..... ++........+.. ++. .+.+|||||..+.. .
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~-----------~ 68 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYF-VTDYD--PTIEDSYTKQCVI-DDRAARLDILDTAGQEEFG-----------A 68 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCC-CSSCC--TTCCEEEEEEEEE-TTEEEEEEEEECC----CC-----------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccC--cccccceeeeeee-ccccccccccccccccccc-----------c
Confidence 348999999999999999999987653 22221 1222233333444 443 78999999976532 1
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|.+++-+... ..++..+.+..+. ...|+++|.||+|+... ..+.. .....+..
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~--~~v~~-------~~~~~~~~ 138 (171)
T d2erya1 69 MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQ--RQVTQ-------EEGQQLAR 138 (171)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTS--CSSCH-------HHHHHHHH
T ss_pred cccccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhh--ccchH-------HHHHHHHH
Confidence 11222445799999999985433333 3344444444433 23589999999997644 22111 11345566
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+.+++. +||.++.|+++++..|.+.+.+
T Consensus 139 ~~~~~~~e------~Sak~~~~i~e~f~~l~~~i~k 168 (171)
T d2erya1 139 QLKVTYME------ASAKIRMNVDQAFHELVRVIRK 168 (171)
T ss_dssp HTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EcCCCCcCHHHHHHHHHHHHHH
Confidence 66766665 7899999999999999887654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=4.5e-19 Score=138.81 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=103.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
-++|+++|.+|+|||||+|++++..... ...++.+.......+.. ++. .+.+|||||..... ..
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~--~~~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 67 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFR-----------TI 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTS-----------CC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCC--ccCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhH-----------HH
Confidence 3799999999999999999998876422 22233444444455555 444 67789999954322 11
Q ss_pred HHhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..+++.+|++++|+|.+++-+.... .+...+..... ...|++++.||.|.... ....+. ...+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~--~~~~~~--------~~~~~~~ 135 (166)
T d1g16a_ 68 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETR--VVTADQ--------GEALAKE 135 (166)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTC--CSCHHH--------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcccc--Ccceeeeecchhhhhhh--hhhHHH--------HHHHHHh
Confidence 23346788999999999855433332 22333333332 23589999999997654 222221 3445555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+++. +|+.++.|++++++.|.+.+.+
T Consensus 136 ~~~~~~~------~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 136 LGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp HTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------ECCCCCCCHHHHHHHHHHHHHh
Confidence 6777776 7889999999999999877644
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=5e-19 Score=139.53 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+|+|.+|||||||++++++...... . .++.+........... ....+.+|||+|...... ...
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~ 70 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-H-DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-----------ITR 70 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-----------CCH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCC-c-ccceeeccceeeeeeeeeEEEEEeecccCccchhh-----------HHH
Confidence 6899999999999999999987764222 2 2223333333333331 224889999999654321 223
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..+..+|++++|+|++++-+-.. ..++..+.+..+.+ .|+++|.||+|.........+ ....+....+
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~~~~~~~~---------~~~~~a~~~~ 139 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKRE---------EGEAFAREHG 139 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHHHT
T ss_pred HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhhhhhhHHH---------HHHHHHHHcC
Confidence 33567899999999985544333 45555566655443 499999999996543111111 1344445556
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+++. +||.++.|+++++..+.+.+
T Consensus 140 ~~~~e------~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 140 LIFME------TSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp CEEEE------ECTTTCTTHHHHHHHHHHHH
T ss_pred CEEEE------ecCCCCCCHHHHHHHHHHHH
Confidence 66655 89999999999998877644
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.77 E-value=2.2e-18 Score=135.10 Aligned_cols=158 Identities=19% Similarity=0.148 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+|+|+|.+|||||||+|++++... .....+ |.... ...+.. ++. .+.+|||||..+. ..
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f-~~~~~~---T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~-----------~~ 67 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEP---TKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC-CcccCC---cccccccccccc-ccccccccccccccccch-----------hh
Confidence 47999999999999999999987653 222221 22222 122333 443 7789999996542 11
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|.+++.+... ..++..+.+..+. ...|+++|.||+|+... ..+.. .....+..
T Consensus 68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~--~~v~~-------~~~~~~~~ 137 (168)
T d1u8za_ 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK--RQVSV-------EEAKNRAD 137 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG--CCSCH-------HHHHHHHH
T ss_pred hhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEecccccccc--ccccH-------HHHHHHHH
Confidence 12223556799999999985444333 3455555554432 33589999999997543 22110 12344555
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+.+++. +||.++.|+++++..|.+.+
T Consensus 138 ~~~~~~~e------~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 138 QWNVNYVE------TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence 56666655 78999999999999876544
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.6e-18 Score=137.14 Aligned_cols=162 Identities=18% Similarity=0.138 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeE-EEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTC-EMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~-~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+|+|.+|+|||||++++++... +.... +|... ....... .+. .+.||||||... +...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f-~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~ 66 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQF-PEVYV---PTVFENYVADIEV-DGKQVELALWDTAGLED-----------YDRL 66 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCC---CCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GTTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC-CCCcC---Cceeeeccccccc-cccceeeeccccCccch-----------hccc
Confidence 6899999999999999999987664 22221 22221 1122222 333 799999999654 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CCchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CPKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~~~~ 170 (311)
...++.++|++|+|+|++++-+-. ...++..+.... + ..|+++|.||+|+... .......... .....
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~--~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~ 141 (177)
T d1kmqa_ 67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-P--NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 141 (177)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T--TSCEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred chhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC-C--CCceEEeeecccccch--hhHHHHHHHhhcccccHHHH
Confidence 456688999999999998543322 234455555543 2 2599999999998765 3222211110 11123
Q ss_pred HHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+. .++. +||.++.|++++++.+.+.+
T Consensus 142 ~~~a~~~~~~~~~E------~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 142 RDMANRIGAFGYME------CSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHH
Confidence 445555553 3444 78999999999999887653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=2e-18 Score=153.27 Aligned_cols=173 Identities=18% Similarity=0.118 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCC---CCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGS---SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~---~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
..++|+|+|.||+|||||+|+|+|......+..+ .++|.....+. ..++.+++||||||++......+.....+
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~--~~~~~~~~l~DtPG~~~~~~~~~~~~~~~- 131 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK--HPNIPNVVFWDLPGIGSTNFPPDTYLEKM- 131 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE--CSSCTTEEEEECCCGGGSSCCHHHHHHHT-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee--ccCCCeEEEEeCCCcccccccHHHHHHHh-
Confidence 4599999999999999999999996543333222 23454443333 33566899999999987655544333221
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCC-------hhcHHHHhhhcCCc
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN-------DETLEDYLGRECPK 168 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-------~~~~~~~~~~~~~~ 168 (311)
....+|++|++.| .+++..+..+++.+.+. + +|+++|+||+|..... ....+..+.. ...
T Consensus 132 -----~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~----k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~-ir~ 198 (400)
T d1tq4a_ 132 -----KFYEYDFFIIISA--TRFKKNDIDIAKAISMM-K----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRL 198 (400)
T ss_dssp -----TGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-T----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHH
T ss_pred -----hhhcceEEEEecC--CCCCHHHHHHHHHHHHc-C----CCEEEEEeCcccccchhhhcccccccHHHHHHH-HHH
Confidence 2445688877766 47888999988888773 2 5999999999964110 0011111111 111
Q ss_pred hHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 169 ~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+...+... ..++++.++.. ....++..|.+.+.+.++.
T Consensus 199 ~~~~~l~~~~~~~~~vflvS~~~----~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 199 NCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHcCCCCCCEEEecCCc----ccccCHHHHHHHHHHHhHH
Confidence 123333332 23455544332 1235788999998887765
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.77 E-value=3.3e-18 Score=138.42 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=102.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-CCcc-----eeEEEEE-----------------------EEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-SGVT-----KTCEMQR-----------------------TMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-~~~T-----~~~~~~~-----------------------~~~~~ 68 (311)
.+.++|+++|+.++|||||+|+|+|.......... ...+ ....... ... .
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-F 84 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-E
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc-c
Confidence 45589999999999999999999984321000000 0000 0000000 000 1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+.++++||||+.| +..........+|++|+|+|+..++ ....+..+..+.. +|. +|+|+++||
T Consensus 85 ~r~~~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i---~~iIV~vNK 149 (205)
T d2qn6a3 85 LRRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGV---KNLIIVQNK 149 (205)
T ss_dssp EEEEEEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEEC
T ss_pred eEEEEEeccchHHH-----------HHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCC---ceeeecccc
Confidence 24689999999443 5555556677899999999998776 5455566655554 332 489999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|+... ......... +...+.... .++++ .||.++.|+++|++.|.+.++.
T Consensus 150 ~Dl~~~--~~~~~~~~~-----~~~~l~~~~~~~~p~ip------iSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 150 VDVVSK--EEALSQYRQ-----IKQFTKGTWAENVPIIP------VSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp GGGSCH--HHHHHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCccc--hHHHHHHHH-----HHHHhccccCCCCeEEE------EeCCCCCChHHHHHHHHhhCCC
Confidence 998865 332222221 233333222 23343 7999999999999999887653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.3e-17 Score=131.12 Aligned_cols=165 Identities=19% Similarity=0.142 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++...... ..+++.........+.+ ++. .+.+||+||... .+++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~~~~g--------~e~~-- 69 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMD-SDCEVLGEDTYERTLMV-DGESATIILLDMWENKG--------ENEW-- 69 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTC-CC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTH--------HHHH--
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCcc-ccccceeeecceeeecc-CCceeeeeeeccccccc--------cccc--
Confidence 458999999999999999999997653111 11122222222233333 443 678999987431 1222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++.++|++|+|+|++++-+-.. ..+...+....+. ...|+++|.||+|+.....-..+ ....+..
T Consensus 70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~---------~~~~~a~ 139 (172)
T d2g3ya1 70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRCREVSVS---------EGRACAV 139 (172)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCGGGCCSCHH---------HHHHHHH
T ss_pred cccccccccceeeeeecccccchhhhhhhhhhhhhhcccc-CCceEEEEeccccccccccccHH---------HHHHHHH
Confidence 23456889999999999985433332 2333333332221 23599999999997644111111 1234445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+.+++. +||.++.|+++++..|.+.+..
T Consensus 140 ~~~~~~~e------~Sak~g~~i~~~f~~l~~~i~~ 169 (172)
T d2g3ya1 140 VFDCKFIE------TSAAVQHNVKELFEGIVRQVRL 169 (172)
T ss_dssp HHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence 55666654 7889999999999998876543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.1e-18 Score=138.02 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|.+|||||||||+|+|.+... .+..+.|...............+.++|+||..... ..............
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 81 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS 81 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee--eccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence 469999999999999999999988632 23333344333333333367788889999976421 11111111111222
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-C
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-N 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 179 (311)
....+++++++.|.+ +.......+...+.+ ...|.++|+||+|.+... ..+... ...+....+ .
T Consensus 82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~-----~~~~~i~v~~k~d~~~~~-~~~~~~--------~~~~~~~~~~~ 146 (179)
T d1egaa1 82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQMNFL 146 (179)
T ss_dssp CCCCEEEEEEEEETT-CCCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTSCCS
T ss_pred chhhcceeEEEEecC-ccchhHHHHHHHhhh-----ccCceeeeeeeeeccchh-hhhhhH--------hhhhhhhcCCC
Confidence 345678888999987 444444444444432 224799999999988652 122221 222333333 2
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCc
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYT 218 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 218 (311)
.+++ +||.++.|+++|++.|.+.+++ +...||
T Consensus 147 ~~~~------vSA~~g~gi~~L~~~i~~~lpe-~~~~yp 178 (179)
T d1egaa1 147 DIVP------ISAETGLNVDTIAAIVRKHLPE-ATHHFP 178 (179)
T ss_dssp EEEE------CCTTTTTTHHHHHHHHHTTCCB-CCCSSC
T ss_pred CEEE------EeCcCCCCHHHHHHHHHHhCCC-CCCCCC
Confidence 3444 7889999999999999988865 444565
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.4e-18 Score=137.11 Aligned_cols=167 Identities=15% Similarity=0.065 Sum_probs=104.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
|....++|+|+|.+|+|||||++++++... +....+ +........+.. .+ ..+.+|||||....
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~--Ti~~~~~~~~~~-~~~~~~l~i~D~~g~e~~---------- 70 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVP--TVFDHYAVSVTV-GGKQYLLGLYDTAGQEDY---------- 70 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCC--SSCCCEEEEEES-SSCEEEEEEECCCCSSSS----------
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCC-CCcCCC--ceeeeeeEEEee-CCceEEeecccccccchh----------
Confidence 344569999999999999999999987653 222221 111222222333 33 36889999996542
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----C
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----C 166 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~ 166 (311)
......++.++|++++|+|++++-+-. ..++...++... . ..|+++|.||+|+.+. .......... .
T Consensus 71 -~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~--~~~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~ 144 (185)
T d2atxa1 71 -DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-P--NVPFLLIGTQIDLRDD--PKTLARLNDMKEKPIC 144 (185)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T--TCCEEEEEECTTSTTC--HHHHHHHTTTTCCCCC
T ss_pred -hhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC-C--CCCeeEeeeccccccc--hhhhhhhhhccccccc
Confidence 222345688899999999998554432 234555555543 2 2589999999998765 3222221110 0
Q ss_pred CchHHHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 167 ~~~~~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
......+....+ ..|+. +||.++.|++++++.+.+.
T Consensus 145 ~~~~~~~a~~~~~~~~~E------~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 145 VEQGQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp HHHHHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEE------ecCCCCcCHHHHHHHHHHH
Confidence 112334445555 34444 7899999999999887654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2.1e-18 Score=137.30 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+|+|.+|||||||+|++++.........+.+.+ ......... ....+.+|||||...... ...
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~ 69 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVMVDDRLVTMQIWDTAGQERFQS-----------LGV 69 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEESSSCEEEEEEEEECSSGGGSC-----------SCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcccee--eeeeeeeeCCceEEEEeeecCCcccccc-----------ccc
Confidence 789999999999999999999766422111112222 222222221 223788999999654321 123
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH-H
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-Q 175 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~-~ 175 (311)
..+..+|++++|+|.+++-+... ..++..+....... ...|+++|.||+|+... ....+. ...+. .
T Consensus 70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 139 (184)
T d1vg8a_ 70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQAWCYS 139 (184)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHHHHHH
T ss_pred ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc--chhHHH--------HHHHHHH
Confidence 44678899999999974433222 34455555544321 12489999999997544 222211 12222 2
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+.+++. +||.++.|++++++.+.+.+
T Consensus 140 ~~~~~~~e------~Sak~~~gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 140 KNNIPYFE------TSAKEAINVEQAFQTIARNA 167 (184)
T ss_dssp TTSCCEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred hcCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence 33455555 78899999999999876544
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=2.3e-18 Score=135.09 Aligned_cols=161 Identities=22% Similarity=0.195 Sum_probs=102.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+++|.+|+|||||++++++.... ....+ ..... ....+.. ++ ..+.+|||||.......
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~-~~~~~-t~~~~-~~~~~~~-~~~~~~~~i~d~~g~~~~~~~---------- 68 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFV-PDYDP-TIEDS-YLKHTEI-DNQWAILDVLDTAGQEEFSAM---------- 68 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-TTCCT-TCCEE-EEEEEEE-TTEEEEEEEEECCSCGGGCSS----------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-cccCc-ceeec-ccccccc-ccccccccccccccccccccc----------
Confidence 3589999999999999999999876532 22221 11111 1222333 33 37889999997653221
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
...+++++|++++|+|++++-+-.. ..++..+.+..+. ...|++++.||+|+... ..+.. .....+..
T Consensus 69 -~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~--~~v~~-------e~~~~~~~ 137 (169)
T d1x1ra1 69 -REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHL--RKVTR-------DQGKEMAT 137 (169)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTT--CCSCH-------HHHHHHHH
T ss_pred -hhhhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhh--ceeeh-------hhHHHHHH
Confidence 1223456799999999985544333 3455555555443 33589999999997755 22211 11345566
Q ss_pred hcCCcEEEecCCchhhhhhHH-HHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTE-QVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~~ 210 (311)
..+.+++. +||+++. |+++++..+.+.+.
T Consensus 138 ~~~~~~~e------~Sak~~~~nV~~~F~~l~~~i~ 167 (169)
T d1x1ra1 138 KYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR 167 (169)
T ss_dssp HHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EcCCCCCcCHHHHHHHHHHHHH
Confidence 66777665 6776665 89999998877653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=1.1e-18 Score=137.07 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||++++++...... ..+..........+.. .+ ..+.+|||||.... ...
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~--~~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~-----------~~~ 68 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcc--ccccccceeecccccc-ccccccccccccCCchhH-----------HHH
Confidence 48999999999999999999987764222 1222222233333443 44 37999999996542 111
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh-hcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 175 (311)
...++..+|++++|+|.+++.+... ..+...+...... ..|++++.||+|+.+... ..+. ......+..
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~v~nk~d~~~~~~~~~v~-------~~~~~~~~~ 139 (170)
T d1ek0a_ 69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDMLQEGGERKVA-------REEGEKLAE 139 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGSSCCCCSC-------HHHHHHHHH
T ss_pred HHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccccc--ccceeeeecccccccccchhhhh-------HHHHHHHHH
Confidence 2334778899999999986544443 2333333333322 358999999999764411 1111 012345556
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..+.+++. +||.++.|+++++..|.+
T Consensus 140 ~~~~~~~e------~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 140 EKGLLFFE------TSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHT
T ss_pred HcCCEEEE------ecCCCCcCHHHHHHHHHH
Confidence 66776665 788999999999998764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.5e-17 Score=132.14 Aligned_cols=174 Identities=13% Similarity=0.167 Sum_probs=103.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
|.+..++|+++|.||||||||+|+|++........ ..+.+.......... .+......++++................
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRAL 89 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHH
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccceeeccceecc-cccceeeeecccccchhhhhhhhhhhhh
Confidence 46678999999999999999999999987532222 222232222222222 4555555555554443333333333333
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.........++.++++.+............+..+.... .++++++||+|.+.. ......... +.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~k~D~~~~--~~~~~~~~~-----~~~~l~ 157 (188)
T d1puia_ 90 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSN-----IAVLVLLTKADKLAS--GARKAQLNM-----VREAVL 157 (188)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred hhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhcc-----ccccchhhhhhccCH--HHHHHHHHH-----HHHHHH
Confidence 33334445667788888888777777777666666532 479999999998876 454444443 444444
Q ss_pred hcCC--cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDN--RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~--~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+. ++++ +||.++.|+++|++.|.+++
T Consensus 158 ~~~~~~~~i~------vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 158 AFNGDVQVET------FSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp GGCSCEEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred hhCCCCcEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 4433 2333 78999999999999998765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.75 E-value=6.6e-18 Score=130.80 Aligned_cols=157 Identities=11% Similarity=0.017 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+|+|.+|||||||+|+|++...... . .+.......... ....+.++|+||... .......
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~--~---~~~~~~~~~~~~-~~~~~~~~d~~g~~~-----------~~~~~~~ 63 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTT--I---PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC--C---CCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc--c---cceeeEEEEEee-eeEEEEEecCCCccc-----------chhhhhh
Confidence 4899999999999999999988764221 1 111122223333 667899999999654 2223344
Q ss_pred ccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
++..++++++++|..++.+... ...+..+..... ....|++++.||.|.... ....+.... . ........+.
T Consensus 64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~k~d~~~~--~~~~~i~~~-~---~~~~~~~~~~ 136 (160)
T d1r8sa_ 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDK-L---GLHSLRHRNW 136 (160)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-T---TGGGCSSCCE
T ss_pred hhccceeEEEEEEecChHHHHHHHHHHHHHHHhhc-ccCceEEEEeeccccccc--ccHHHHHHH-H---HHHHHhhCCC
Confidence 5778899999999985443332 122222221111 123589999999997755 222221111 0 0111122233
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++. +||.++.|+++++++|.+
T Consensus 137 ~~~~------~SAktg~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 137 YIQA------TCATSGDGLYEGLDWLSN 158 (160)
T ss_dssp EEEE------CBTTTTBTHHHHHHHHHH
T ss_pred EEEE------eECCCCCCHHHHHHHHHh
Confidence 3333 799999999999999875
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.3e-17 Score=128.25 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||++++++... +... .+|....+......++ ..+.+|||||..... ..
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f-~~~~---~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~--- 66 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRF-IWEY---DPTLESTYRHQATIDDEVVSMEILDTAGQEDTI--------QR--- 66 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC-CSCC---CTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH--------HH---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-CCcc---CCceeccccccccccccceEEEEeecccccccc--------cc---
Confidence 48999999999999999999998653 2221 1233333222222144 378899999965421 01
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHH-HHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
..++.++|++++|+|++++-+..... +...+..... ....|+++|.||+|+... ..+. ......+...
T Consensus 67 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~--r~V~-------~~e~~~~a~~ 135 (168)
T d2atva1 67 -EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHS--RQVS-------TEEGEKLATE 135 (168)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGG--CCSC-------HHHHHHHHHH
T ss_pred -hhhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhh--ccCc-------HHHHHHHHHH
Confidence 12244679999999998654444332 2233333222 233599999999997543 2211 1113445556
Q ss_pred cCCcEEEecCCchhhhhhHHH-HHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQ-VGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~~ 209 (311)
.+.+++. +||.++.+ +++++..+.+.+
T Consensus 136 ~~~~~~e------~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 136 LACAFYE------CSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp HTSEEEE------CCTTTCTTCHHHHHHHHHHHH
T ss_pred hCCeEEE------EccccCCcCHHHHHHHHHHHH
Confidence 6766655 78888874 999998777654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.5e-18 Score=134.70 Aligned_cols=166 Identities=14% Similarity=0.033 Sum_probs=102.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|||||||+|++++.... ....+ +........+.. ++ ..+.+||++|... +.
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~-~~~~~--ti~~~~~~~~~~-~~~~~~~~~~d~~g~~~-----------~~ 67 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIP--TVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------YD 67 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCC--CSCCEEEEEEEE-TTEEEEEEEECCCCSGG-----------GT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCC-ccccc--ceeeceeeeeec-cCcceEEEeeccccccc-----------ch
Confidence 44589999999999999999999977642 22221 111222222333 33 3678999999543 23
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----Cc
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PK 168 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~ 168 (311)
.....++..+|++++|+|++++-+-.. ..+...+..... ..|+++|.||+|+... ....+...... ..
T Consensus 68 ~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~---~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~~ 142 (183)
T d1mh1a_ 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 142 (183)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred hhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCC---CCcEEEEeecccchhh--hhhhhhhhhccccchhhH
Confidence 334456889999999999985544332 335555555432 2599999999997655 22221111111 11
Q ss_pred hHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 169 ~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
....+....+. .|+. +||.++.|+++++..+.+.+
T Consensus 143 ~~~~~a~~~~~~~~~E------~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 143 QGLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp HHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEE------cCCCCCcCHHHHHHHHHHHH
Confidence 22334444442 3433 78899999999999887654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.2e-17 Score=129.11 Aligned_cols=160 Identities=16% Similarity=0.050 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+|+|.+|||||||+|++++.... .... ++............ .+ ..+.+|||||... ...
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~-----------~~~ 70 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFD-TQLF-HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 70 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-C-----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC-Cccc-cceeeeeeeeeeee-cCceeeEeeecccCcce-----------ehh
Confidence 3579999999999999999999876532 2111 22222222333333 43 3678999999543 233
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
.....+..+|++++++|.+++.+-.. ..++..+....... ...|+++|.||+|+.+. .... .....+
T Consensus 71 ~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~--~v~~--------~~~~~~ 140 (174)
T d1wmsa_ 71 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVST--------EEAQAW 140 (174)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCH--------HHHHHH
T ss_pred hhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhc--cCcH--------HHHHHH
Confidence 44556788999999999985544332 34555555544321 23589999999997543 1111 113444
Q ss_pred HHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 174 LQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 174 ~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
....+ .+++. +||.++.|++++++.+.+.
T Consensus 141 ~~~~~~~~~~e------~Sak~~~gI~e~f~~l~~~ 170 (174)
T d1wmsa_ 141 CRDNGDYPYFE------TSAKDATNVAAAFEEAVRR 170 (174)
T ss_dssp HHHTTCCCEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCCeEEE------EcCCCCcCHHHHHHHHHHH
Confidence 54443 45554 7889999999999887654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.7e-18 Score=131.80 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.++|+|+|.+|||||||++++++... +....+ ... ......+... ....+.+|||+|...... + .
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f-~~~~~~-t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~---~ 68 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIF-VEKYDP-TIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTA--------M---R 68 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCSCCC-CSE-EEEEEEEESSSCEEEEEEEEECSSCSSTT--------H---H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCccCC-ccc-cccceeEEeeeeEEEeccccccCcccccc--------c---c
Confidence 48999999999999999999987764 222211 111 1112222221 223789999999776321 1 1
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++|+|+|++++-+-.. ..++..+.+..+. ...|+++|.||+|+........+ ....+....
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~---------~~~~~~~~~ 138 (167)
T d1c1ya_ 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE---------QGQNLARQW 138 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccccccchh---------HHHHHHHHh
Confidence 223556799999999985544333 3444555444432 23489999999997644111111 123333332
Q ss_pred -CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 -DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 -~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +||.++.|+++++..|.+.+
T Consensus 139 ~~~~~~e------~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 139 CNCAFLE------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEE------EcCCCCcCHHHHHHHHHHHh
Confidence 344444 78999999999999887654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.74 E-value=1.6e-17 Score=135.39 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc-------------------------------cCCCCCcceeEEEEEEEe
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS-------------------------------KAGSSGVTKTCEMQRTML 66 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-------------------------------~~~~~~~T~~~~~~~~~~ 66 (311)
++.++|+++|+.++|||||+++|+....... .....+.|.......+.+
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 4668999999999999999999964221100 001134555555666666
Q ss_pred eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 67 ~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
.++.+.|+||||+.++ ...+......+|++++|+|+..++...+.+.+..+.. .|- +++++++|
T Consensus 87 -~~~~~~iiD~PGH~df-----------v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~-~gv---~~iiv~vN 150 (222)
T d1zunb3 87 -AKRKFIIADTPGHEQY-----------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 150 (222)
T ss_dssp -SSEEEEEEECCCSGGG-----------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred -cceEEEEEeccchhhh-----------hhhhccccccCceEEEEeccccCcccchHHHHHHHHH-cCC---CEEEEEEE
Confidence 7889999999998773 2222233567799999999998999888888776665 442 47999999
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc--EEEecCCchhhhhhHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLCDNR--CVLFDNKTKDAAKRTEQV 198 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~~~~~sa~~~~~i 198 (311)
|+|+.............. +..++...+.. -++| .++||.++.|+
T Consensus 151 K~D~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~i~~---IPiSA~~G~ni 196 (222)
T d1zunb3 151 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNV 196 (222)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTT
T ss_pred ccccccccceehhhhHHH-----HhhhhHhhccCCCceEE---EEEEcccCccC
Confidence 999886543444443333 56666655431 1111 12577777665
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=1.7e-17 Score=129.47 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=97.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+|+|.+|||||||++++++...........+.+.......+.. ....+.++|++|... .......
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~ 70 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQER----------FRKSMVQ 70 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHH----------HHTTTHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchh----------hccccce
Confidence 37899999999999999999987664322222222232222222222 344788999999432 1111223
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++.++|++|+|+|++++-+-.. ..++..+.+.... ...|+++|.||+|+... ..+.. .....+...++
T Consensus 71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~--~~v~~-------~~~~~~~~~~~ 140 (165)
T d1z06a1 71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA--IQVPT-------DLAQKFADTHS 140 (165)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG--CCSCH-------HHHHHHHHHTT
T ss_pred eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhc--cchhH-------HHHHHHHHHCC
Confidence 44678999999999985544443 3455555554432 23599999999997654 22111 11345566667
Q ss_pred CcEEEecCCchhhhhh---HHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKR---TEQVGKLLSLV 205 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~---~~~i~~l~~~i 205 (311)
.+++. +||++ +.++++++..|
T Consensus 141 ~~~~e------~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 141 MPLFE------TSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp CCEEE------CCSSSGGGGSCHHHHHHHH
T ss_pred CEEEE------EecccCCcCcCHHHHHHHh
Confidence 66655 56654 44788887765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.72 E-value=2.8e-17 Score=129.55 Aligned_cols=163 Identities=11% Similarity=0.019 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++.++|+|+|.+|||||||+|+|.+........ ..+ ........ .+..+.++|++|..... ..
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~----~~~~~~~~-~~~~~~~~d~~~~~~~~-----------~~ 75 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG----SNVEEIVI-NNTRFLMWDIGGQESLR-----------SS 75 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSC----SSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccc----eeEEEEee-cceEEEEeccccccccc-----------cc
Confidence 456999999999999999999999987532211 112 12223333 67789999999965422 12
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.......++++++|+|.++..+....................|+++|+||+|+... ....+..... . .......
T Consensus 76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~~-~---~~~~~~~ 149 (177)
T d1zj6a1 76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFL-K---LTSIKDH 149 (177)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHH-T---GGGCCSS
T ss_pred hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHHH-H---HHhhHhc
Confidence 22335678999999999844433332211111111222234699999999997654 2222211110 0 0000111
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +||.++.|+++++++|.+.+
T Consensus 150 ~~~~~~------~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 150 QWHIQA------CCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp CEEEEE------CBTTTTBTHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 223444 79999999999999998765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3e-17 Score=131.25 Aligned_cols=164 Identities=16% Similarity=0.104 Sum_probs=101.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||++++++... +.... ++........... .+. .+.+|||||..+ +...
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f-~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~ 67 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYV--PTVFDNYAVTVMI-GGEPYTLGLFDTAGQED-----------YDRL 67 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GTTT
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-CCCcC--CceeeecceeEee-CCceeeeeccccccchh-----------hhhh
Confidence 38999999999999999999987664 22211 1111222222333 433 789999999654 3334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----CchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~~ 170 (311)
...++..+|++++|+|++++-+-.. ..++..+... .. ..|+++|.||+|+... ....+...... ....
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~~i~lvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 142 (191)
T d2ngra_ 68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CP--KTPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETA 142 (191)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CT--TCCEEEEEECGGGGGC--HHHHHHHHTTTCCCCCHHHH
T ss_pred hhhcccccceeecccccchHHHHHHHHHHHHHHHhhc-CC--CCceEEEecccccccc--chhhhhhhhcccccccHHHH
Confidence 5566889999999999985544333 2344444443 22 2589999999998755 22211111100 1112
Q ss_pred HHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+ ..++. +||.++.|++++++.+...+
T Consensus 143 ~~~~~~~~~~~~~e------~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 143 EKLARDLKAVKYVE------CSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp HHHHHHTTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEE------EeCCCCcCHHHHHHHHHHHH
Confidence 33444433 35554 78899999999998877654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.70 E-value=1.4e-16 Score=124.23 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=100.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|||||||+|++++.... . ...|.......... ++..+.++|+||.... .....
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~--~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~ 67 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVV--T---TIPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPYWR 67 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--C---CCCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--c---eecccceeeeeecc-CceEEEEeeccccccc-----------cccch
Confidence 489999999999999999999987652 1 22344444445555 7889999999996542 22233
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
......+++++++|+........ ...+....... .....|++++.||+|+... ....+..... .........
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~~----~~~~~~~~~ 140 (169)
T d1upta_ 68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQA--MTSSEMANSL----GLPALKDRK 140 (169)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC--CCHHHHHHHH----TGGGCTTSC
T ss_pred hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeecccccc--ccHHHHHHHH----HHHHHhcCC
Confidence 44677899999999873333322 22222222111 1233589999999998755 2222221110 000111112
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.++++ +||.++.|+++++++|.+.+.+
T Consensus 141 ~~~~~------~SA~~g~gv~e~~~~l~~~l~~ 167 (169)
T d1upta_ 141 WQIFK------TSATKGTGLDEAMEWLVETLKS 167 (169)
T ss_dssp EEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 23333 7899999999999999887644
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.9e-17 Score=126.55 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+++|.+|||||||++++++... .. ..+. +.......+.. ++. .+.||||||... ..
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f-~~-~~~t--~~~~~~~~i~v-~~~~~~l~i~Dt~g~~~---------~~--- 66 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSY-QV-LEKT--ESEQYKKEMLV-DGQTHLVLIREEAGAPD---------AK--- 66 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCC-CC-CCCS--SCEEEEEEEEE-TTEEEEEEEEECSSCCC---------HH---
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCC-CC-cCCc--cceeEEEEeec-CceEEEEEEeecccccc---------cc---
Confidence 359999999999999999999988764 22 1111 11222223344 554 688999999553 11
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
+++.+|++|+|+|++++-+-.. ..+...+....... ...|+++|.||.|........+.. .....+.
T Consensus 67 ----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~-------~~~~~~~ 135 (175)
T d2bmja1 67 ----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARALC 135 (175)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH-------HHHHHHH
T ss_pred ----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH-------HHHHHHH
Confidence 2345799999999985544333 34455555543322 224899999998864331111111 1123343
Q ss_pred Hhc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
... +..++. +||.++.|+++++..+.+.+
T Consensus 136 ~~~~~~~~~e------~SAk~~~~v~~~F~~l~~~i 165 (175)
T d2bmja1 136 ADMKRCSYYE------TCATYGLNVDRVFQEVAQKV 165 (175)
T ss_dssp HTSTTEEEEE------EBTTTTBTHHHHHHHHHHHH
T ss_pred HHhCCCeEEE------eCCCCCcCHHHHHHHHHHHH
Confidence 332 334443 78889999999988766543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=9.4e-17 Score=124.54 Aligned_cols=161 Identities=8% Similarity=0.028 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
||+++|.+|||||||+|+|++.... . .++|.......... .+..+.++||+|... ........
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~--~---~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~ 64 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA--T---LQPTWHPTSEELAI-GNIKFTTFDLGGHIQ-----------ARRLWKDY 64 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--C---CCCCCSCEEEEECC-TTCCEEEEECCCSGG-----------GGGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--e---eeceeeEeEEEecc-CCeeEEEEeeccchh-----------hhhhHhhh
Confidence 7999999999999999999987652 1 23344444455555 677899999998543 22334455
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCC-hhcHHHHhhhcCCchHHHHH-HhcC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEIL-QLCD 178 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 178 (311)
...++++++++|.++...... ...+..... .......|++++.||.|..... ...+.+.+.. ......... ...+
T Consensus 65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 142 (166)
T d2qtvb1 65 FPEVNGIVFLVDAADPERFDEARVELDALFN-IAELKDVPFVILGNKIDAPNAVSEAELRSALGL-LNTTGSQRIEGQRP 142 (166)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTC-SSCCC---CCSSCC
T ss_pred hhheeeeeeeccccchhhhhhhhHHHHhhhh-hhccCCceEEEEeccccccccCCHHHHHHHhhh-hhhhHHHhhcccCC
Confidence 778899999999985444333 222222222 2223446899999999986541 1122222111 000001100 0111
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..++ .+||.++.|+++++++|.+
T Consensus 143 ~~~~------~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 143 VEVF------MCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp EEEE------EEBTTTTBSHHHHHHHHTT
T ss_pred CEEE------EeeCCCCCCHHHHHHHHhC
Confidence 1223 3799999999999999864
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=3.2e-16 Score=123.85 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+|+|.+|||||||+++++.... +....+ +........+.. ++. .+.+|||||.... ....
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f-~~~~~~--t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-----------~~~~ 67 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVP--TVFENYTASFEI-DTQRIELSLWDTSGSPYY-----------DNVR 67 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC--CSEEEEEEEEEC-SSCEEEEEEEEECCSGGG-----------TTTG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-CCccCC--ceeecccccccc-cceEEeeccccccccccc-----------cccc
Confidence 6899999999999999999987653 222221 112222233333 333 7789999996542 1123
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc----CCchHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPKPLKE 172 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~~~~ 172 (311)
...+.++|++|+|+|++++-+-.. ..+...+... .. ..|+++|.||+|+.... .......... .......
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~~iilVgnK~Dl~~~~-~~~~~~~~~~~~~V~~~e~~~ 143 (179)
T d1m7ba_ 68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CP--NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGAN 143 (179)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CT--TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHH
T ss_pred cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CC--cceEEEEEecccccccc-hhhHHHhhhhcCcchHHHHHH
Confidence 445789999999999985543232 2333444443 33 25999999999976541 1111111100 0112344
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHH-HHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTE-QVGKLLSLVNSVI 209 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~ 209 (311)
+....+. .|+. +||.++. +++++++.+...+
T Consensus 144 ~a~~~~~~~y~E------~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 144 MAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp HHHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCeEEE------EeCCCCCcCHHHHHHHHHHHH
Confidence 5555454 3443 6888876 5999999877654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2.5e-16 Score=131.44 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=98.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMS----------------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
+..+|+++|+.|+|||||+.+|+....... .....+.|.......+.| ++..++|+||||+.|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~d 83 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVD 83 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSS
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhh
Confidence 346899999999999999999953221100 011135677777788899 999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+... .... +.-+|++|+|+|+.++........++...+. ..|.++++||+|.... ...+.
T Consensus 84 F~~e-------~~~~----l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-----~lP~i~fINKmDr~~a---d~~~~- 143 (276)
T d2bv3a2 84 FTIE-------VERS----MRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA---DLWLV- 143 (276)
T ss_dssp CSTT-------HHHH----HHHCCEEEEEEETTTSSCHHHHHHHHHHHTT-----TCCEEEEEECTTSTTC---CHHHH-
T ss_pred hHHH-------HHHH----HHhhhheEEeccccCCcchhHHHHHHHHHHc-----CCCEEEEEeccccccc---ccchh-
Confidence 7543 2333 2345999999999989999998888887753 2599999999997654 22222
Q ss_pred hhcCCchHHHHHHhcCCcEEEec
Q 021534 163 GRECPKPLKEILQLCDNRCVLFD 185 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~ 185 (311)
+.++-..++.++.++.
T Consensus 144 -------l~ei~~~l~~~~vp~~ 159 (276)
T d2bv3a2 144 -------IRTMQERLGARPVVMQ 159 (276)
T ss_dssp -------HHHHHHTTCCCEEECE
T ss_pred -------HHHHHHHhCCCeEEEE
Confidence 3334455666666543
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=9.5e-16 Score=126.10 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=95.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc---------------cc--------------CCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM---------------SK--------------AGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~---------------~~--------------~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|+.++|||||+.+|+...... .+ ....|.|..+....+.+ .
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~ 82 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 82 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-C
Confidence 345899999999999999999995321100 00 01156788888888888 8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
+++++|+||||+.| +..-+......+|++|+|+|+..+ ........+.... ..|- +++
T Consensus 83 ~~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~~gv---~~i 147 (239)
T d1f60a3 83 KYQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLGV---RQL 147 (239)
T ss_dssp SEEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTTC---CEE
T ss_pred CEEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-HcCC---CeE
Confidence 99999999999888 444455667889999999999743 2234444444443 3443 478
Q ss_pred EEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 142 ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
|+++||+|....+.....+...+ +..++...+
T Consensus 148 iv~iNKmD~~~~d~~~~~~~~~e-----l~~~l~~~~ 179 (239)
T d1f60a3 148 IVAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 179 (239)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHH-----HHHHHHhcC
Confidence 99999999886543444444443 555555544
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.65 E-value=3.6e-16 Score=130.21 Aligned_cols=114 Identities=25% Similarity=0.256 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccc------CC----------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSK------AG----------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~------~~----------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
.+|+++|+.++|||||+.+|+........ .. ..+.|.......+.| ++..+++|||||+.|+
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF- 80 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF- 80 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence 58999999999999999999543211100 00 135677777888899 9999999999999885
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
..+.... +.-+|++|+|+|+.++........++.+.+.. .|.++++||+|..
T Consensus 81 ------~~e~~~a----l~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~-----~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 81 ------VGEIRGA----LEAADAALVAVSAEAGVQVGTERAWTVAERLG-----LPRMVVVTKLDKG 132 (267)
T ss_dssp ------HHHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCEEEEEECGGGC
T ss_pred ------hhhhhhh----hcccCceEEEeeccCCccchhHHHHHhhhhcc-----ccccccccccccc
Confidence 2333333 33459999999999899999988888887642 4899999999964
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=9.7e-16 Score=123.88 Aligned_cols=118 Identities=10% Similarity=0.156 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+|+|+||||||||+|+|++.... +++|.......+.. ++..+.+|||||..... ..+.....
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~-------~~~~~~~~ 68 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR-------YKLSDYLK 68 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETTG-GGSSCEEEECCCCGGGT-------HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEEe-CCeEEEEEecccccchh-------hHHHHHHH
Confidence 479999999999999999999987641 23343444444445 77889999999976432 22333333
Q ss_pred hccCCccEEEEEEECCC-CCC-hhHHHHH----HHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRN-RFS-KEEGAAI----HILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~-~~~-~~~~~~l----~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+...++.+++++|+.. ... ......+ ..+..... ...|+++|+||+|+...
T Consensus 69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE--NGIDILIACNKSELFTA 126 (209)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHST--TCCCEEEEEECTTSTTC
T ss_pred HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHh--ccCCeEEEEEeeccccc
Confidence 44555689999999762 211 1222222 22233322 34599999999998765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=2.3e-14 Score=122.27 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC-cceeEEEEE----------------------------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG-VTKTCEMQR---------------------------------- 63 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~-~T~~~~~~~---------------------------------- 63 (311)
..++|+|+|..++|||||||+|+|.+++|++..+.. +.+.+.+..
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 346899999999999999999999998776654321 111111111
Q ss_pred --------------EEeeCCceEEEEeCCCCCCCCCCh--HHHHHHHHHHHHhccCCcc-EEEEEEECCCCCChhHHHHH
Q 021534 64 --------------TMLKAGQVVNVIDTPGLFDSSADP--EFVSKEIVKCIGMAKDGIH-AVLLVFSIRNRFSKEEGAAI 126 (311)
Q Consensus 64 --------------~~~~~~~~l~liDTPG~~~~~~~~--~~~~~~~~~~~~~~~~~~d-~il~v~d~~~~~~~~~~~~l 126 (311)
+....-.+++||||||+......+ ......+...+..+...++ ++++|.+++..++..+ .+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~ 182 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--AL 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HH
Confidence 111123468999999998654322 1222233333333444455 5566667765666554 33
Q ss_pred HHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 127 HILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 127 ~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+++.+.+ ...++++|+||+|..++
T Consensus 183 ~~~~~~~~--~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 183 KIAKEVDP--QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCT
T ss_pred HHHHHhCc--CCCceeeEEeccccccc
Confidence 44444332 23589999999998865
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=5.1e-15 Score=119.55 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+++|++|||||||+|+|++...... .++.+.......+....+..+.+|||||... . ....+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~---~~~~~~~ 67 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVNNNRGNSLTLIDLPGHES-------L---RFQLLDR 67 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECSSTTCCEEEEEECCCCHH-------H---HHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEeeeeeeeeeeeecccccc-------c---cchhhhh
Confidence 3799999999999999999998764221 1222323333332222456899999999432 1 1123334
Q ss_pred ccCCccEEEEEEECCCCCCh---hHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 101 AKDGIHAVLLVFSIRNRFSK---EEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~---~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
++..++++++|+|+++.... ....+...+..........|+++|.||+|+...
T Consensus 68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence 46778999999999843221 112223333333222233589999999998754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.60 E-value=2.8e-15 Score=118.50 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=93.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
.++..+|+++|.+|||||||+|+|++...... . +|.......+.+ .+..+.++|++|......
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------- 72 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-V----PTLHPTSEELTI-AGMTFTTFDLGGHIQARR----------- 72 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-e----cccccceeEEEe-cccccccccccchhhhhh-----------
Confidence 35679999999999999999999998875211 1 122222333444 677889999999665322
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHH-HHHHHHHHhCCCccCeEEEEEeccCCCCCC-hhcHHHHhhhcCCchHH--H
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLK--E 172 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-~~~~~~~~~~~~~~~~~--~ 172 (311)
.........+++++++|.++........ .+.... ........|++++.||.|..... ...+.+........... .
T Consensus 73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (186)
T d1f6ba_ 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLM-TDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 151 (186)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHH-TCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred HHhhhhcccceeeeeeeccCccchHHHHHHHHHhh-cccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhh
Confidence 2334466789999999988443333221 111111 11112346999999999976441 11122222110000000 0
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.......+.+ ...++||.++.|+++++++|.+.
T Consensus 152 ~~~~~~~~~~---~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 152 SLKELNARPL---EVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp CTTTCCSCCE---EEEECBTTTTBSHHHHHHHHHTT
T ss_pred hHHHhhcCCC---EEEEEeCCCCCCHHHHHHHHHHh
Confidence 0000011101 11247999999999999998753
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.60 E-value=2.2e-14 Score=122.83 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC-cceeEE--------------------------------------
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG-VTKTCE-------------------------------------- 60 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~-~T~~~~-------------------------------------- 60 (311)
-++|+|+|..++|||||||+|+|...+|++..+.. +.+.+.
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence 36899999999999999999999987666543311 000111
Q ss_pred ------------------EEEEEeeCCceEEEEeCCCCCCCCCChH--HHHHHHHHHHHhccCCccEEEEE-EECCCCCC
Q 021534 61 ------------------MQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSKEIVKCIGMAKDGIHAVLLV-FSIRNRFS 119 (311)
Q Consensus 61 ------------------~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~~~~~~~~~~~~~~d~il~v-~d~~~~~~ 119 (311)
...+....-..+.||||||+......+. .....+...+..+...+++++++ +++...+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~ 183 (306)
T d1jwyb_ 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (306)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence 1112221234789999999986543221 12223344444455667775555 46554444
Q ss_pred hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 120 KEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 120 ~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
... .+..+++.-+ ...++++|+||+|....
T Consensus 184 ~~~--~~~~~~~~~~--~~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 184 NSD--ALQLAKEVDP--EGKRTIGVITKLDLMDK 213 (306)
T ss_dssp TCS--HHHHHHHHCS--SCSSEEEEEECTTSSCS
T ss_pred ccH--HHHHHHHhCc--CCCeEEEEEeccccccc
Confidence 433 3344554433 23589999999998865
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.56 E-value=1.4e-14 Score=118.30 Aligned_cols=119 Identities=25% Similarity=0.336 Sum_probs=77.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCCcceeEEEEEEEeeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAF-----------------------------MSKAGSSGVTKTCEMQRTMLKAG 69 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~-----------------------------~~~~~~~~~T~~~~~~~~~~~~~ 69 (311)
+.++|+++|+.++|||||+.+|+..... .......+.|.......+.+ ++
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~ 80 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 80 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CC
Confidence 4689999999999999999998642210 00111245677777777788 88
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCC-------hhHHHHHHHHHHHhCCCccCeEE
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS-------KEEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i 142 (311)
..++||||||+.| +..........+|++|+|+|+.++.. ...++.+..... .+. .++|
T Consensus 81 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~---~~iI 145 (224)
T d1jnya3 81 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI 145 (224)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred ceeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCC---CceE
Confidence 9999999999887 44445556778899999999986532 223333333332 333 4799
Q ss_pred EEEeccCCCCC
Q 021534 143 VVFTGGDELED 153 (311)
Q Consensus 143 lv~nk~D~~~~ 153 (311)
+++||+|+...
T Consensus 146 v~iNK~D~~~~ 156 (224)
T d1jnya3 146 VAVNKMDLTEP 156 (224)
T ss_dssp EEEECGGGSSS
T ss_pred EEEEcccCCCc
Confidence 99999998753
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.56 E-value=3e-15 Score=123.68 Aligned_cols=161 Identities=18% Similarity=0.195 Sum_probs=90.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCCcceeEEEEEEEee
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFM-----------------------------SKAGSSGVTKTCEMQRTMLK 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~ 67 (311)
..+.++|+++|+.++|||||+.+|+...... ......+.|.......+.+
T Consensus 21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~- 99 (245)
T d1r5ba3 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET- 99 (245)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-
T ss_pred CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-
Confidence 3456789999999999999999994311100 0011134555555666677
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-------ChhHHHHHHHHHHHhCCCccCe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-------SKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
.+..+.++||||+.++ ..........+|++++|+|+.++. .....+.+..+.. .|. ++
T Consensus 100 ~~~~i~~iDtPGH~df-----------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i---~~ 164 (245)
T d1r5ba3 100 EHRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NH 164 (245)
T ss_dssp SSEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SS
T ss_pred ccceeeeecccccccc-----------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCC---Ce
Confidence 7889999999998774 333334466789999999997543 2244555544444 332 36
Q ss_pred EEEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhc-C------CcEEEecCCchhhhhhHHHHHHHHHH
Q 021534 141 MIVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLC-D------NRCVLFDNKTKDAAKRTEQVGKLLSL 204 (311)
Q Consensus 141 ~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~f~~~~~~sa~~~~~i~~l~~~ 204 (311)
+++++||+|.... ......+.+.. +...+... + .++++ +||.++.|+.++++.
T Consensus 165 iiv~iNKmD~~~~~~~e~~~~ei~~~-----l~~~l~~i~~~~~~~~v~~VP------iSA~~G~nI~~~~~s 226 (245)
T d1r5ba3 165 LVVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKYMP------VSAYTGQNVKDRVDS 226 (245)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEEEE------CBTTTTBTTSSCCCT
T ss_pred EEEEEEcCCCCccchhHHHHHHHHHH-----HHHHHHHHhCcCcccCCEEEE------eeccCCCCcccchhc
Confidence 8999999998643 22333433333 33333332 1 12344 788888888766543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=2.6e-13 Score=108.44 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|||||||++++. +.... .+|..+....+.+ .+..+.+|||+|.. .....+.
T Consensus 2 ~iKivllG~~~vGKTsll~r~~----f~~~~---~pTiG~~~~~~~~-~~~~~~~~D~~gq~-----------~~~~~~~ 62 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR----IIHGQ---DPTKGIHEYDFEI-KNVPFKMVDVGGQR-----------SERKRWF 62 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH----HHHSC---CCCSSEEEEEEEE-TTEEEEEEEECC------------------CT
T ss_pred eEEEEEECCCCCCHHHHHHHHh----cCCCC---CCeeeeEEEEEee-eeeeeeeeccccee-----------eeccccc
Confidence 3799999999999999999993 22221 2355566667777 88899999999943 3555667
Q ss_pred hccCCccEEEEEEECCCCCC--------hhHHHHHHHHHHHhCC--CccCeEEEEEeccCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFS--------KEEGAAIHILESLFGK--KISDYMIVVFTGGDEL 151 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~--------~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~ 151 (311)
.++..++++++++|.++... ......+..+...+.. ....|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 124 (200)
T ss_dssp TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence 78899999999999874321 1112333344444332 1235999999999975
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=8.5e-14 Score=110.76 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|..|||||||++.+..... + |.......+.. ....+.+|||+|... +...+.
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~-~--------t~~~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~ 60 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHE-A--------GTGIVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWI 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHS-C--------CCSEEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-C--------CccEEEEEEEe-eeeeeeeeccccccc-----------cccchh
Confidence 48999999999999999999864332 1 12233344555 778999999999443 566677
Q ss_pred hccCCccEEEEEEECCCCCCh--------hHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCC--hhcHHHHhhhcC-
Q 021534 100 MAKDGIHAVLLVFSIRNRFSK--------EEGAAIHILESLFGK--KISDYMIVVFTGGDELEDN--DETLEDYLGREC- 166 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~--------~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~~- 166 (311)
.++.+++++++|+|.++..+. .....+......... ....|+++++||+|..... ...+........
T Consensus 61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~ 140 (195)
T d1svsa1 61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG 140 (195)
T ss_dssp GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCS
T ss_pred hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcC
Confidence 889999999999998633211 111222222222221 1234999999999964210 001110000000
Q ss_pred Cc-------hHHHHHHh----cC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 167 PK-------PLKEILQL----CD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 167 ~~-------~~~~~~~~----~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. .+...+.. +. ..++.+ .+||.++.+++++++.+.+.+-
T Consensus 141 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~tSA~~~~nv~~~F~~v~~~il 192 (195)
T d1svsa1 141 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQFVFDAVTDVII 192 (195)
T ss_dssp CSSHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcccCCCcceeE----EEEeECCHhHHHHHHHHHHHHH
Confidence 00 01111111 11 122222 2688899999999999887653
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=3.9e-14 Score=121.62 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=79.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCCcceeEEEEEEEee---------------CCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSK--------------AGSSGVTKTCEMQRTMLK---------------AGQ 70 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~--------------~~~~~~T~~~~~~~~~~~---------------~~~ 70 (311)
..+|+|+|+.++|||||+.+|+........ ....+.|.......+.+. ++.
T Consensus 17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 96 (341)
T d1n0ua2 17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 96 (341)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence 457999999999999999999632211000 001234444444444331 234
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 71 ~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
.++||||||+.|+. .+....+ +-+|++|+|+|+.+++...+...++...+. ..|.++++||+|.
T Consensus 97 ~inliDtPGh~dF~-------~ev~~al----~~~D~allVVda~eGv~~qT~~~~~~a~~~-----~~p~i~viNKiDr 160 (341)
T d1n0ua2 97 LINLIDSPGHVDFS-------SEVTAAL----RVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVDR 160 (341)
T ss_dssp EEEEECCCCCCSSC-------HHHHHHH----HTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHHH
T ss_pred EEEEEcCCCcHHHH-------HHHHHHH----hhcCceEEEEecccCcchhHHHHHHHHHHc-----CCCeEEEEECccc
Confidence 69999999999864 3344333 346999999999989999998888776653 2499999999997
Q ss_pred C
Q 021534 151 L 151 (311)
Q Consensus 151 ~ 151 (311)
.
T Consensus 161 ~ 161 (341)
T d1n0ua2 161 A 161 (341)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=2.8e-13 Score=108.12 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=102.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|||||||++++..... . ..+|.......+.. ....+.+|||+|... +...+.
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~----~~pTiG~~~~~~~~-~~~~~~~~d~~g~~~-----------~~~~~~ 63 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHG--S----GVPTTGIIEYPFDL-QSVIFRMVDVGGQRS-----------ERRKWI 63 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTS--S----CCCCCSCEEEEEEC-SSCEEEEEECCCSTT-----------GGGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC--C----CCceeeEEEEEEec-cceeeeecccccccc-----------cccccc
Confidence 58999999999999999999975543 1 12355555556666 778999999999654 444566
Q ss_pred hccCCccEEEEEEECCCCCC--------hhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC--ChhcHHHHhhhcC-
Q 021534 100 MAKDGIHAVLLVFSIRNRFS--------KEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED--NDETLEDYLGREC- 166 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~--------~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~--~~~~~~~~~~~~~- 166 (311)
.++.+++++++|+|.++... ......+..+...+... ...|+++++||.|+... ....+..+.....
T Consensus 64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~ 143 (200)
T d2bcjq2 64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 143 (200)
T ss_dssp GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCS
T ss_pred ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccC
Confidence 77899999999999873211 11122223333332221 23589999999997532 0012222211100
Q ss_pred -Cc-------hHHHHHHh----cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 167 -PK-------PLKEILQL----CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 167 -~~-------~~~~~~~~----~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. .+...... ....++.| .+||.++.+++++++.|.+.+.
T Consensus 144 ~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~----~tSAk~~~ni~~vF~~i~~~I~ 195 (200)
T d2bcjq2 144 PQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRFVFAAVKDTIL 195 (200)
T ss_dssp CSSCHHHHHHHHHHHHHTTCSCTTSCEEEE----ECCTTCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCCceEEE----EeEEEcCHhHHHHHHHHHHHHH
Confidence 00 01111111 11223332 2578899999999999987664
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.31 E-value=4.7e-12 Score=102.85 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|.+|||||||++.+..... .+|..+....+.+ ++..+.+||++|... ....+.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~--------~pTiG~~~~~~~~-~~~~~~~~D~~Gq~~-----------~r~~w~ 65 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV--------VLTSGIFETKFQV-DKVNFHMFDVGGQRD-----------ERRKWI 65 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC--------CCCCSCEEEEEEE-TTEEEEEEECCCSTT-----------TTTGGG
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc--------CCCCCeEEEEEEE-CcEEEEEEecCccce-----------eccchh
Confidence 47999999999999999999853322 1244455555666 788999999999654 344456
Q ss_pred hccCCccEEEEEEECCCCC--------ChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRF--------SKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~ 153 (311)
.++.++++++||+|.+... .....+.+..+...+... ...|++|++||+|+.+.
T Consensus 66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~ 129 (221)
T d1azta2 66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 129 (221)
T ss_dssp GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence 6788999999999987211 111234445555555553 23599999999997643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=2.1e-12 Score=110.93 Aligned_cols=89 Identities=17% Similarity=0.087 Sum_probs=45.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEE----e-------------------eCCceEEEEeC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTM----L-------------------KAGQVVNVIDT 77 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~----~-------------------~~~~~l~liDT 77 (311)
.+|+++|.||||||||+|+|+|... ...+++.+|.+....... . .....+.++|+
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~--~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~ 78 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCC--chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence 3799999999999999999999875 445566666543322111 0 01135899999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
||+...... ...+...+...+..+|++++|+|+.
T Consensus 79 pGli~ga~~----g~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETT
T ss_pred CCcccchhc----ccchHHHHHHhhccceEEEEEeccc
Confidence 998753211 1223333334467899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.23 E-value=3.1e-11 Score=99.07 Aligned_cols=125 Identities=16% Similarity=0.088 Sum_probs=64.2
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.++||||..+.. .......... . ....+++++++|+.....+...................|.++|+||+|
T Consensus 95 ~~~~~id~~g~~~~~----~~~~~~~~~~-~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D 168 (244)
T d1yrba1 95 NDYVLIDTPGQMETF----LFHEFGVRLM-E-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD 168 (244)
T ss_dssp CSEEEEECCSSHHHH----HHSHHHHHHH-H-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred cceeeeccccchhHH----HHHHHHHHHH-h-hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence 358999999975421 0001111111 1 234578999999874454444322222211111112248999999999
Q ss_pred CCCCChhcHHHHhhhc------------CCchHHH-------HHHhc--CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 150 ELEDNDETLEDYLGRE------------CPKPLKE-------ILQLC--DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~------------~~~~~~~-------~~~~~--~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.... .......... ....... .+... ..++++ +||.++.|+++|+..|.++
T Consensus 169 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 169 LLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLY------LSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp GCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEE------CCTTTCTTHHHHHHHHHHH
T ss_pred cccH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEE------EECCCCCCHHHHHHHHHHH
Confidence 8865 2222111100 0000001 11111 123333 7889999999999998875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=6.6e-10 Score=94.67 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 021534 19 GERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
..++|+|.|+||+|||||+|+|.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~ 75 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFG 75 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHH
Confidence 46999999999999999999997
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=1.3e-11 Score=103.39 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=47.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
..+..++|+|+|.||||||||+|+|.|.....++ ..+|+|+..+... .+..+.++||||+.-+...+.+...
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~----~~~~~~l~DTPGi~~p~~~~~~~~~ 179 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVK----VGKELELLDTPGILWPKFEDELVGL 179 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCHHHHH
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEE----CCCCeEEecCCCccccCCccHHHHh
Confidence 3456799999999999999999999998875443 4578887765433 4677999999999877655554433
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.17 E-value=1.6e-11 Score=104.11 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=65.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTPGLFD 82 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTPG~~~ 82 (311)
..++|+++|.||||||||+|+|++.... ...+.+++|.......+..++. ..+.++|.||+..
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~-~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLG-NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTT-STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCC-CcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 3489999999999999999999987542 2345678887766666655221 2689999999875
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
.......+...+... ++.+|++++|+|+.
T Consensus 88 gA~~g~GLGn~fL~~----ir~~d~lihVV~~f 116 (296)
T d1ni3a1 88 GASTGVGLGNAFLSH----VRAVDAIYQVVRAF 116 (296)
T ss_dssp CCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred ccccccccHHHHHHH----hhccceeEEEEecc
Confidence 433333333334333 45679999999875
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.12 E-value=1.6e-11 Score=103.17 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=57.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTPGLFDSS 84 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTPG~~~~~ 84 (311)
++|+++|.||||||||+|+|++... .....+.+|.......+...+. -.+.++|.||+....
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~--~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga 80 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCC--ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence 6899999999999999999998875 3445567777776666655221 258899999987421
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
-....+...+-+. ++.+|++++|+|+.
T Consensus 81 ~~g~Glg~~FL~~----ir~~d~LihVVr~f 107 (278)
T d1jala1 81 SKGEGLGNKFLAN----IRETDAIGHVVRCF 107 (278)
T ss_dssp HHHGGGTCCHHHH----HHTCSEEEEEEECS
T ss_pred ccCCCccHHHHHH----HHhccceEEEeecc
Confidence 1111122223333 45679999999863
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=1.4e-10 Score=92.81 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
....+|+|.||+|||||||+|++.....++... ..+|+..+.+.+ . ..-.|||||||.++.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l---~-~gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF---D-FGGYVVDTPGFANLE 161 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC---T-TSCEEESSCSSTTCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEE---C-CCcEEEeCCcccccc
Confidence 467899999999999999999987654443221 235555555543 2 235799999997754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.94 E-value=5.2e-09 Score=88.93 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=58.7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHH-HHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI-LESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~nk 147 (311)
|..+.||.|.|.+... -.+ ...+|.+++|+....+ .+.+.++. +-+ ..=++|+||
T Consensus 143 g~d~iiiETVG~gq~e-------~~~-------~~~~D~~v~v~~p~~G---D~iQ~~k~gilE-------~aDi~vvNK 198 (323)
T d2qm8a1 143 GFDVILVETVGVGQSE-------TAV-------ADLTDFFLVLMLPGAG---DELQGIKKGIFE-------LADMIAVNK 198 (323)
T ss_dssp TCCEEEEEECSSSSCH-------HHH-------HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEEC
T ss_pred CCCeEEEeehhhhhhh-------hhh-------hcccceEEEEeeccch---hhhhhhhhhHhh-------hhheeeEec
Confidence 3567888888876421 111 3457999999987621 22221110 111 145899999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHH-------hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQ-------LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+|.... ......... .+...+. .+..+++. +|+.++.|+++|.+.|.++..
T Consensus 199 aD~~~~--~~~~~~~~~----~~~~~l~~~~~~~~~~~p~V~~------~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 199 ADDGDG--ERRASAAAS----EYRAALHILTPPSATWTPPVVT------ISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp CSTTCC--HHHHHHHHH----HHHHHHTTBCCSBTTBCCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccc--hHHHHHHHH----HHHHHhhcccccccCCCCceEE------EEecCCCCHHHHHHHHHHHHH
Confidence 997655 332222111 0111111 12233444 789999999999999988764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=4e-10 Score=90.42 Aligned_cols=60 Identities=28% Similarity=0.391 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----C--CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----S--GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~--~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
....+|+|+||+|||||||+|++.....++... . .+|+....+. . +| -.|||||||.++.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~-~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--T-SG--GLVADTPGFSSLE 162 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--E-TT--EEEESSCSCSSCC
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--c-CC--CEEEECCcccccc
Confidence 456789999999999999999997654433221 1 2444444432 3 33 3589999997754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.72 E-value=1.6e-08 Score=80.32 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=78.8
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCc------cc-cccCCC-CC---------cceeEEEEEEE----------
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILGKK------AF-MSKAGS-SG---------VTKTCEMQRTM---------- 65 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~------~~-~~~~~~-~~---------~T~~~~~~~~~---------- 65 (311)
+.-++.++..|+++|++|+||||.+-.|...- +. .+.... .+ ....+..+...
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~ 83 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAF 83 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHH
T ss_pred CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHH
Confidence 34455666789999999999999987764211 10 000000 00 00000000000
Q ss_pred ------eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc----CCccEEEEEEECCCCCChhHHHHHHHHHHHhCC
Q 021534 66 ------LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK----DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK 135 (311)
Q Consensus 66 ------~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~----~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~ 135 (311)
...+..+.||||||... .+.....++.......- ..++-+++|+|++.. ..+..-.......+
T Consensus 84 ~~~~~~~~~~~d~ilIDTaGr~~---~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-- 156 (213)
T d1vmaa2 84 DAVAHALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-- 156 (213)
T ss_dssp HHHHHHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS--
T ss_pred HHHHHHHHcCCCEEEEecccccc---chHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc--
Confidence 00345789999999654 33444444544433222 236789999998722 22222222222223
Q ss_pred CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 136 KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 136 ~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
.+--+++||.|....-+.. -.+...++.++.++.+.
T Consensus 157 ---~~~~lI~TKlDe~~~~G~~-------------l~~~~~~~~Pi~~i~~G 192 (213)
T d1vmaa2 157 ---NVTGIILTKLDGTAKGGIT-------------LAIARELGIPIKFIGVG 192 (213)
T ss_dssp ---CCCEEEEECGGGCSCTTHH-------------HHHHHHHCCCEEEEECS
T ss_pred ---CCceEEEecccCCCcccHH-------------HHHHHHHCCCEEEEeCC
Confidence 2567889999976542222 33344456676665444
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.64 E-value=3.2e-07 Score=72.54 Aligned_cols=151 Identities=14% Similarity=0.076 Sum_probs=73.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCc------c-ccccCCC--------------CCcceeEEEEE--------
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILGKK------A-FMSKAGS--------------SGVTKTCEMQR-------- 63 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~------~-~~~~~~~--------------~~~T~~~~~~~-------- 63 (311)
..-|...+..|+++|++|+||||++-.|...- + +.+.... .+.........
T Consensus 5 ~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~ 84 (211)
T d1j8yf2 5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAK 84 (211)
T ss_dssp CCSCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred ccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHH
Confidence 34455667788999999999999987774211 0 0000000 00000000000
Q ss_pred -----EEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCcc
Q 021534 64 -----TMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 64 -----~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~ 138 (311)
... .+..+.||||||.... ........++....... .++-+++|++++.... +..........++
T Consensus 85 ~a~~~~~~-~~~d~IlIDTaGr~~~-~~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~--~~~~~~~~~~~~~---- 154 (211)
T d1j8yf2 85 RGVEKFLS-EKMEIIIVDTAGRHGY-GEEAALLEEMKNIYEAI--KPDEVTLVIDASIGQK--AYDLASKFNQASK---- 154 (211)
T ss_dssp HHHHHHHH-TTCSEEEEECCCSCCT-TCHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGG--HHHHHHHHHHHCT----
T ss_pred HHHHHhhc-cCCceEEEecCCcCcc-chhhHHHHHHHHHHhhc--CCceEEEEEecccCcc--hHHHHhhhhcccC----
Confidence 001 4457899999996432 11122233344433322 4578899999873332 2222222333332
Q ss_pred CeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
.--+++||.|....-+. +-.++..++.++.++.+.
T Consensus 155 -~~~lI~TKlDet~~~G~-------------~l~~~~~~~lPi~~it~G 189 (211)
T d1j8yf2 155 -IGTIIITKMDGTAKGGG-------------ALSAVAATGATIKFIGTG 189 (211)
T ss_dssp -TEEEEEECTTSCSCHHH-------------HHHHHHTTTCCEEEEECS
T ss_pred -cceEEEecccCCCcccH-------------HHHHHHHHCcCEEEEeCC
Confidence 34577999997755222 233444556666655443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=5.5e-07 Score=71.03 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=52.7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc----CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK----DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~----~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
+..+.||||||... .+....+++.......- ..++-+++|+|++.. ..+........+..+ .--++
T Consensus 91 ~~d~ilIDTaGr~~---~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI 160 (211)
T d2qy9a2 91 NIDVLIADTAGRLQ---NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LTGIT 160 (211)
T ss_dssp TCSEEEECCCCCGG---GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSC-----CCEEE
T ss_pred CCCEEEeccCCCcc---ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccC-----CceEE
Confidence 44689999999643 23334444544432211 236789999998733 222222222222232 46778
Q ss_pred EeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 145 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 145 ~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
+||.|....-+.. -.+...++.++.++.+-
T Consensus 161 lTKlDe~~~~G~~-------------l~~~~~~~~Pi~~i~~G 190 (211)
T d2qy9a2 161 LTKLDGTAKGGVI-------------FSVADQFGIPIRYIGVG 190 (211)
T ss_dssp EECCTTCTTTTHH-------------HHHHHHHCCCEEEEECS
T ss_pred EeecCCCCCccHH-------------HHHHHHHCCCEEEEeCC
Confidence 9999987553222 33444557776665544
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.7e-07 Score=77.62 Aligned_cols=93 Identities=22% Similarity=0.114 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK-AFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+...|+|+|+.++|||+|+|.|+|.. .|..+.+..++|..+-.+..... .+..+.++||.|+.+....+......+.
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~ 110 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 110 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHHHH
Confidence 35689999999999999999999865 35555555677777765554432 3458999999999875433222222232
Q ss_pred HHHHhccCCccEEEEEEEC
Q 021534 96 KCIGMAKDGIHAVLLVFSI 114 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~ 114 (311)
..... -++++||-+..
T Consensus 111 ~l~~l---lSs~~i~N~~~ 126 (277)
T d1f5na2 111 ALAVL---LSSTFVYNSIG 126 (277)
T ss_dssp HHHHH---HCSEEEEEEES
T ss_pred HHHHH---HhCEEEEeccc
Confidence 22211 13666666653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.52 E-value=1.2e-06 Score=69.02 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=45.3
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||.... +.....++...... ..++-+++|+|++.+ ..+......+.+.++ .--+++||
T Consensus 91 ~~~d~vlIDTaGr~~~---d~~~~~el~~~~~~--~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TK 158 (207)
T d1ls1a2 91 EARDLILVDTAGRLQI---DEPLMGELARLKEV--LGPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTK 158 (207)
T ss_dssp HTCCEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEEC
T ss_pred ccCcceeecccccchh---hhhhHHHHHHHHhh--cCCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEee
Confidence 3457899999997642 33344555554432 256788999998633 233344444444443 35578999
Q ss_pred cCCCCC
Q 021534 148 GDELED 153 (311)
Q Consensus 148 ~D~~~~ 153 (311)
.|....
T Consensus 159 lDe~~~ 164 (207)
T d1ls1a2 159 LDGDAR 164 (207)
T ss_dssp GGGCSS
T ss_pred cCcccc
Confidence 997654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.47 E-value=6.2e-07 Score=70.66 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=42.7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHH---HHhc-cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKC---IGMA-KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~---~~~~-~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
+..+.||||||.... +....+++... .... ...++-+++|+|++... .+........+.++ +--++
T Consensus 88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----~~~lI 157 (207)
T d1okkd2 88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI 157 (207)
T ss_dssp TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhccC-----CceEE
Confidence 457899999996542 23333333332 2211 23568899999987433 23222222333333 45678
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||.|....
T Consensus 158 ~TKlDet~~ 166 (207)
T d1okkd2 158 VTKLDGTAK 166 (207)
T ss_dssp EECTTSSCC
T ss_pred EeccCCCCC
Confidence 999997755
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.18 E-value=4e-05 Score=66.00 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
..-++++||+||+|||+++..|..
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHHH
Confidence 345678999999999999987764
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.75 E-value=1.7e-05 Score=65.29 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=39.5
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
...+..+|+||+|+|+..+++..+..+.+.++ .+|+++|+||+|+++. ...+.
T Consensus 10 ~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~-------~Kp~IlVlNK~DLv~~--~~~~~ 62 (273)
T d1puja_ 10 TEKLKLIDIVYELVDARIPMSSRNPMIEDILK-------NKPRIMLLNKADKADA--AVTQQ 62 (273)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS-------SSCEEEEEECGGGSCH--HHHHH
T ss_pred HHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc-------CCCeEEEEECccCCch--HHHHH
Confidence 34466779999999998888877755444442 3699999999999876 44444
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.62 E-value=1.1e-05 Score=61.67 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.+|+++|++|+|||||++.|+|.-
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l 24 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhcC
Confidence 379999999999999999998754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.61 E-value=2.3e-06 Score=67.53 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.-|+++|.||+||||+.+.|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999974
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=2.8e-05 Score=58.64 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
+.|+|+|.+|||||||++.|..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.41 E-value=3.5e-05 Score=58.89 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+|+|+|++|+|||||+++|...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=4.2e-05 Score=61.41 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-+|+|+|++|||||||++.|+|-..
T Consensus 29 Ge~vaIvG~sGsGKSTLl~ll~gl~~ 54 (241)
T d2pmka1 29 GEVIGIVGRSGSGKSTLTKLIQRFYI 54 (241)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46799999999999999999999643
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.31 E-value=8.6e-05 Score=59.61 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|||||||++.|+|-..
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 53 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 346899999999999999999998653
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.30 E-value=6.5e-05 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
++..+|+|+|+|||||||+.+.|..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 4568999999999999999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.29 E-value=6.9e-05 Score=59.52 Aligned_cols=26 Identities=27% Similarity=0.320 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||++.|.|-..
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~gl~~ 56 (230)
T d1l2ta_ 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (230)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCcchhhHhccCCCC
Confidence 35789999999999999999998643
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.28 E-value=6.9e-05 Score=58.44 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|+|-..
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl~~ 52 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTYLK 52 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcccc
Confidence 4689999999999999999998653
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.28 E-value=7e-05 Score=60.58 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++|+|++|||||||++.|+|-..
T Consensus 41 Ge~iaivG~sGsGKSTLl~ll~gl~~ 66 (253)
T d3b60a1 41 GKTVALVGRSGSGKSTIASLITRFYD 66 (253)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCCChHHHHHHHHhcccC
Confidence 35799999999999999999998643
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=7.8e-05 Score=59.25 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 27 ei~~liGpsGsGKSTLl~~i~Gl~~ 51 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAGLET 51 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 5789999999999999999998654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.27 E-value=6e-05 Score=56.84 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
++|+|+|+|||||||+.+.|..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=8.8e-05 Score=59.91 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|||||||++.|+|-..
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~~ 65 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLYQ 65 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 346889999999999999999998653
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.20 E-value=9.5e-05 Score=60.75 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.|+|+|++|||||||++.|+|...
T Consensus 62 Ge~vaivG~nGsGKSTLl~~i~Gl~~ 87 (281)
T d1r0wa_ 62 GEMLAITGSTGSGKTSLLMLILGELE 87 (281)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCc
Confidence 35789999999999999999999653
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00029 Score=57.18 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..-+++++|+||+|||+++..|...
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999998753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.16 E-value=0.00011 Score=58.85 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|+|-..
T Consensus 33 ei~~liGpnGaGKSTl~~~i~Gl~~ 57 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5789999999999999999999654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.15 E-value=0.00015 Score=57.87 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl~~ 57 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGLEE 57 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 5689999999999999999999653
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00012 Score=56.33 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..-+++++|+||+|||+++..|...-. .+..+.. . .+..+.-+|+..+........++.+.+...+
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp~~-----------L-~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il 107 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRII--NGEVPEG-----------L-KGRRVLALDMGALVAGAKYRGEFEERLKGVL 107 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH--HTCSCGG-----------G-TTCEEEEECHHHHHTTTCSHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHHH--hCCCCHH-----------H-cCceEEEeeHHHHhccCCccHHHHHHHHHHH
Confidence 346899999999999999988864322 1111111 1 4455667776665543333344555555555
Q ss_pred HhccC-CccEEEEEEEC
Q 021534 99 GMAKD-GIHAVLLVFSI 114 (311)
Q Consensus 99 ~~~~~-~~d~il~v~d~ 114 (311)
..... .-++|+|+=++
T Consensus 108 ~e~~~~~~~iILfIDei 124 (195)
T d1jbka_ 108 NDLAKQEGNVILFIDEL 124 (195)
T ss_dssp HHHHHSTTTEEEEEETG
T ss_pred HHHhcCCCcEEEEcchH
Confidence 44322 23556666444
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.13 E-value=9.3e-05 Score=58.66 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl~~ 51 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4789999999999999999999653
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=8.3e-05 Score=59.35 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++++|++|||||||++.|+|-
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 56899999999999999999994
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.13 E-value=0.00013 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 5789999999999999999998654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.12 E-value=0.00014 Score=57.90 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.++++|++|||||||++.|.|-..
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~ 49 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 668999999999999999999653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.09 E-value=0.00015 Score=53.42 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
-|+++|.|||||||+.+.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999854
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.00018 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||+|.|+|-..
T Consensus 29 ei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.08 E-value=0.00017 Score=55.44 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+.+.|+|.|++|||||||.+.|..
T Consensus 20 ~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999999863
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.0076 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...+++.|++|+||||++.++..
T Consensus 33 ~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 33 LPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.06 E-value=0.00022 Score=54.05 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
+...-|+++|.||||||||...++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999998863
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.05 E-value=0.00015 Score=58.60 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|+|-..
T Consensus 31 ei~~liG~nGaGKSTLl~~i~Gl~~ 55 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVITGFLK 55 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCc
Confidence 4679999999999999999999754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00019 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++++|++|||||||++.|.|-.
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHcCCc
Confidence 578999999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.04 E-value=0.00016 Score=58.57 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++++|++|||||||++.|.|-.
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 578999999999999999999854
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.03 E-value=0.0001 Score=59.57 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-+|+|+|++|||||||++.|+|-..
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 69 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFYD 69 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence 346899999999999999999998654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=9.7e-05 Score=56.48 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-|+|+|++|+|||||++.|+..
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 4888999999999999999854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.01 E-value=0.00023 Score=54.86 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+..|+|+|+|||||||+...|...
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478899999999999999988643
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.01 E-value=0.0002 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
+..+|+++|+|||||||....|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998863
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.00 E-value=0.0012 Score=53.02 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||+++++|.+.
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhhc
Confidence 357999999999999999999753
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.00 E-value=0.00017 Score=54.18 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-|+|+|.+|||||||++.|+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.99 E-value=0.00011 Score=58.65 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl~~ 56 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCcC
Confidence 5789999999999999999999654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.00031 Score=54.27 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+....|+|+|+|||||||+...|....
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999986543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.95 E-value=0.00075 Score=53.21 Aligned_cols=47 Identities=26% Similarity=0.205 Sum_probs=29.2
Q ss_pred CCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 103 DGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 103 ~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++|.+++|+.+.++ +...-....-.+....+ .+.++|+||+|+..+
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~----i~pvIvlnK~DL~~~ 56 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEAND----IQPIICITKMDLIED 56 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTT----CEEEEEEECGGGCCC
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcC----CCEEEEEeccccccc
Confidence 467999999988633 43333222222222222 378899999999876
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.93 E-value=0.0002 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.+|+|+|+|||||||+...|...
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988644
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.90 E-value=0.0002 Score=53.78 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
++|+++|.+||||||+.+.|.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998885
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.89 E-value=0.00025 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|+|+|+|||||||+.+.|...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999743
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0018 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.718 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|++.|+||+|||+++++|...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHH
Confidence 56899999999999999999743
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.86 E-value=0.00036 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|+|.|+|||||||+.+.|...
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.85 E-value=0.0004 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|.++|.|||||||+.+.|..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457888999999999999988863
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00029 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|++||||||+...|..
T Consensus 3 k~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.83 E-value=0.00032 Score=53.27 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|.|.+||||||+++.|.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999885
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00045 Score=51.74 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...-|+|+|.+||||||+.+.|..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446677899999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.80 E-value=0.00033 Score=53.26 Aligned_cols=21 Identities=48% Similarity=0.763 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|+|+|||||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.79 E-value=0.00046 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+|+|+|+|||||||+...|...
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999998754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.00041 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
++.|+|.|.+|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5889999999999999999885
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00037 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+|++.|++|+|||||+..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.70 E-value=0.00033 Score=58.66 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+|+|.|++|+|||||+|+|++.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 46999999999999999999864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00032 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|+|+|++|||||||++.|+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45789999999999999999754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.69 E-value=0.00045 Score=52.64 Aligned_cols=22 Identities=45% Similarity=0.755 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+|+|+|+|||||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988644
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.00042 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++|||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.65 E-value=0.0005 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+|+|+|+|||||||+...|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.65 E-value=0.00045 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|+|+|++||||||+++.|...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45789999999999999999754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.00056 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
++.|+|+|+|||||||....|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999988864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.63 E-value=0.00048 Score=51.45 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+++|.+||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988743
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.0047 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.+++.|++|+||||++..+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999988753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.00065 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+|+|+|+|||||||+...|..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00055 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+|+|+|+|||||||....|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988853
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.52 E-value=0.00076 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|+|.|.+||||||+.+.|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56788899999999999998653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.48 E-value=0.0006 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+.-|++.|+||+|||||..+|.+.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.47 E-value=0.0037 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||++++++.+.
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHHH
Confidence 45899999999999999998764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.00074 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++||||||+++.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.39 E-value=0.00095 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...|+|+|+|||||||+...|....
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999986543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.35 E-value=0.00087 Score=51.52 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...+..|+|-|..||||||+++.|..
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.35 E-value=0.0008 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...++|.|+||+||||+++++.+.
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.30 E-value=0.0085 Score=46.79 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCccEEEEEEECCC-CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRN-RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
.++|.+++|+.+.. .+...-....-.+....+ .+.++|+||+|+.++ .....+... ..... .+..+
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~----i~pvIvlnK~DL~~~--~~~~~~~~~------~~~~~-~~~~v 75 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE----LETVMVINKMDLYDE--DDLRKVREL------EEIYS-GLYPI 75 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT----CEEEEEECCGGGCCH--HHHHHHHHH------HHHHT-TTSCE
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC----CCEEEEEeCcccCCH--HHHHHHHHh------hcccc-cceeE
Confidence 46799999998863 344332222112222233 488999999998865 433322211 11111 12333
Q ss_pred EEecCCchhhhhhHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLV 205 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i 205 (311)
+. +|+.++.+++.|...+
T Consensus 76 ~~------vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 76 VK------TSAKTGMGIEELKEYL 93 (225)
T ss_dssp EE------CCTTTCTTHHHHHHHH
T ss_pred EE------eccccchhHhhHHHHh
Confidence 33 4556667777776654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.27 E-value=0.001 Score=49.91 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
.|+++|.+||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47889999999999998884
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.00066 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|.++|.|||||||+.+.|..
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999853
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.0012 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.+++.|+||+||||+.+.|...
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHhc
Confidence 56899999999999999998754
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0018 Score=50.40 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
-+++.|++|+||||++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999986653
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.21 E-value=0.0014 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 021534 19 GERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.+..|+|.|.+||||||+.+.|.
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.17 E-value=0.0017 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......++|.|+||+||||+++.|..
T Consensus 40 ~~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 40 GHHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.13 E-value=0.0014 Score=49.62 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
.|+|.|.+||||||+++.|.
T Consensus 3 iivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46778999999999999985
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=95.97 E-value=0.0059 Score=49.20 Aligned_cols=72 Identities=6% Similarity=-0.120 Sum_probs=37.1
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..+.++|||+-....... . . .....+|.++.+++.. ..+-. ...++..+.............+|+|+.
T Consensus 116 ~D~viiD~p~~~~~~~~~----~----~--~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~ 184 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFA----M----P--IREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSR 184 (269)
T ss_dssp CSEEEEEEECSSCSTTTT----H----H--HHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECC
T ss_pred CCEEEeccCCccchhHHH----H----H--HHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeee
Confidence 368899998744321100 0 0 1123468888887765 32222 234555555543222212345788998
Q ss_pred CCCC
Q 021534 149 DELE 152 (311)
Q Consensus 149 D~~~ 152 (311)
+...
T Consensus 185 ~~~~ 188 (269)
T d1cp2a_ 185 KVAN 188 (269)
T ss_dssp SSSC
T ss_pred cCCC
Confidence 8554
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0024 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh
Q 021534 17 SNGERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...++.|+|.|.+|||||||.+.|.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3456999999999999999988874
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.94 E-value=0.0025 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
..+...|.+.|.|||||||+.+.|..
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999863
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.90 E-value=0.0011 Score=53.99 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=17.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.+.+.|+|.|.+||||||+.++|.
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHH
Confidence 345689999999999999999864
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0032 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
....+++.|+||+||||++.+|.+..
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999997643
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.82 E-value=0.0028 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.+++.|++|+||||++..+...
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.78 E-value=0.0024 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+++|+||+|||.|.++|...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 367899999999999999999753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0037 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHh
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
....++-|+|.|.+|||||||...|.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 34456899999999999999988764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.75 E-value=0.014 Score=42.88 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
+...|++-|.-|||||||+..++..-.......+|+.+. +..|. . .+..+.=+|.=
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~--~-~~~~i~H~DlY 87 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYN--I-AGKMIYHFDLY 87 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEE--E-TTEEEEEEECT
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeec--c-CCceEEEEEEe
Confidence 346789999999999999999865433222222233232 22222 2 55567777743
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.74 E-value=0.0018 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..+.|.|+||+|||++++++...
T Consensus 47 ~~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 47 MIYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEEECTTCCSSSHHHHHHHHHHH
T ss_pred eEEEeECCCCCCHHHHHHHHHHH
Confidence 34556799999999999998754
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.64 E-value=0.0034 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++|++-|+|||||||....|...
T Consensus 3 ~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 3 TIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999999988644
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.0026 Score=50.03 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.+..+|.|.-|||||||+|.++..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence 5578899999999999999999764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0046 Score=48.06 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.|++.|+|||||||....|...-
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999998886543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.0047 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.++|.|++|+||||++..+...
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999998754
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.00095 Score=51.22 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|+|++|+||||++.+|.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999983
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.005 Score=47.68 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
+.|+|.|.+||||||+.+.|.
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 578999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.24 E-value=0.006 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+++++|.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 45899999999999999999853
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.0055 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.+++.|++|+||||+++.+...
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHHH
Confidence 46899999999999999887643
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.17 E-value=0.0059 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
+.|+|.|.+||||||+.+.|-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.15 E-value=0.0048 Score=49.50 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|++|+|||||++.++.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999998763
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.07 E-value=0.024 Score=44.14 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=37.4
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEE-EEEec
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMI-VVFTG 147 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i-lv~nk 147 (311)
..+.|+|||+..+ ..... .+..+|.+++++..+ ..+-.. ...+..+++. + .|++ +|+|+
T Consensus 112 ~d~IiiD~~~~~~---------~~~~~----~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-~----~~~~giv~N~ 172 (237)
T d1g3qa_ 112 FDFILIDCPAGLQ---------LDAMS----AMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-G----LAILGFVLNR 172 (237)
T ss_dssp CSEEEEECCSSSS---------HHHHH----HHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-T----CEEEEEEEEE
T ss_pred CCEEEEccccccc---------ccchh----hhhhhhccccccccc-ceecchhhHHHHHHhhh-h----hhhhhhhhcc
Confidence 3789999998432 11111 234579999999876 322222 3444444432 2 2443 88999
Q ss_pred cCCCCC
Q 021534 148 GDELED 153 (311)
Q Consensus 148 ~D~~~~ 153 (311)
.+....
T Consensus 173 ~~~~~~ 178 (237)
T d1g3qa_ 173 YGRSDR 178 (237)
T ss_dssp ETSCTT
T ss_pred cccccc
Confidence 985543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.0097 Score=49.23 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
..+..+...++++|+||+|||.|..+|..
T Consensus 46 ~~~~~p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 46 GHEHKPVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp SCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCceEEEEECCCcchhHHHHHHHHh
Confidence 34444556899999999999999999863
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0072 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.+++.|++|+||||++..+...
T Consensus 36 ~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 36 PHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHH
Confidence 35899999999999999998753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.0057 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|++.|++|+|||+|++++.+..
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 569999999999999999997643
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.95 E-value=0.0069 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.82 E-value=0.0069 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+++.|+||+|||+|.++|.+.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998653
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.008 Score=46.22 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.+.|.|+||+|||+|...++.
T Consensus 24 ~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 24 SITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 5678999999999999988764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.69 E-value=0.0099 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+..-|+|.|+||+||||++.+++..
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhhh
Confidence 3467999999999999999998763
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.67 E-value=0.0083 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
+.+|+++|+||||||-|.++|.+
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999865
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.65 E-value=0.045 Score=42.40 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=35.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..+.|+|||+... . .....+ ..+|.+++|++.+ ...... ...+..+.+ .+. ..+-+|+|+.
T Consensus 110 ~D~viiD~~~~~~-----~----~~~~~l----~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~-~~~---~~~~iv~N~~ 171 (232)
T d1hyqa_ 110 TDILLLDAPAGLE-----R----SAVIAI----AAAQELLLVVNPE-ISSITDGLKTKIVAER-LGT---KVLGVVVNRI 171 (232)
T ss_dssp CSEEEEECCSSSS-----H----HHHHHH----HHSSEEEEEECSS-HHHHHHHHHHHHHHHH-HTC---EEEEEEEEEE
T ss_pred cceeeeccccccc-----c----hhHHHh----hhhheeeeecccc-ccchhhhhhhhhhhhh-ccc---cccccccccc
Confidence 3578999988543 1 111112 2368999998876 332222 233333333 332 2466789998
Q ss_pred CCC
Q 021534 149 DEL 151 (311)
Q Consensus 149 D~~ 151 (311)
+..
T Consensus 172 ~~~ 174 (232)
T d1hyqa_ 172 TTL 174 (232)
T ss_dssp CTT
T ss_pred ccc
Confidence 743
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.62 E-value=0.0052 Score=50.42 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=16.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l 40 (311)
++ +++|++||||||++.+|
T Consensus 26 ln-vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 26 VT-AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EE-EEECCTTTCSTHHHHHH
T ss_pred eE-EEECCCCCcHHHHHHHH
Confidence 44 67899999999999988
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=94.56 E-value=0.029 Score=45.40 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l 40 (311)
.+|++-|..|+||||+.-.|
T Consensus 3 r~IaisgKGGVGKTT~a~NL 22 (289)
T d2afhe1 3 RQCAIYGKGGIGKSTTTQNL 22 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57889999999999975443
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.011 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
+..|+|=|.-||||||+++.|..
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999863
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.39 E-value=0.012 Score=49.57 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+..+|+++|+||||||-+..+|..
T Consensus 66 ~p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 66 LSKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcceeeeCCCCccHHHHHHHHHh
Confidence 3457799999999999999999853
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.0073 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|-|..||||||+++.|..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.014 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.-|+|-|..||||||+++.|..
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998753
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.01 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=17.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l 40 (311)
+.++ +|+|++|+||||++.+|
T Consensus 25 ~~l~-~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 25 SNFT-SIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp CSEE-EEECSTTSSHHHHHHHH
T ss_pred CCEE-EEECCCCCCHHHHHHHH
Confidence 3455 57899999999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.04 E-value=0.015 Score=43.47 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.=|++.|++|+||||+.-.|..
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 5589999999999999988764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.01 E-value=0.016 Score=43.42 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.=|++.|++|+||||+.-.|..
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5589999999999999988864
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=93.98 E-value=0.014 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
++.-.|++.|++++|||+|+++|.+
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3457899999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.01 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.+.|.|+||+|||+|+..++-.
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999887644
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.019 Score=44.36 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.-|+|-|..||||||+++.|..
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688889999999998888743
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.028 Score=44.20 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.+.|.|+||+|||+|.-.++.
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999877763
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.17 E-value=0.032 Score=45.91 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHh
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.|..+.-.++++|+||+|||.+.+.|.
T Consensus 48 ~~~kp~~~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 48 DPNRPIGSFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp CSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CCCCCceEEEEECCCcchHHHHHHHHH
Confidence 344444578999999999999988775
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.16 E-value=0.025 Score=42.00 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.=|++.|++|+||||+.-.|..
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999999999877654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.96 E-value=0.03 Score=43.96 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|..||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.017 Score=49.66 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....+++|+|.||+|||++++.++-
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEEEeCCCCcHHHHHHHHHH
Confidence 3456799999999999999987763
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.80 E-value=0.029 Score=43.40 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCc
Q 021534 23 LVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.+.|++|+|||-|++++....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999997643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.74 E-value=0.024 Score=46.73 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..++++|+||+|||.+..+|.+.
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 44666899999999999999764
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.034 Score=38.46 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh
Q 021534 17 SNGERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
+.+.+.|.+-|.+|+||||+.++|.
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHH
Confidence 3466999999999999999999986
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.66 E-value=0.04 Score=44.40 Aligned_cols=25 Identities=44% Similarity=0.551 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|..|+|||||...+++.
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999988753
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.66 E-value=0.015 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.|+++|+||+|||+|+.++.+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999998853
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.47 E-value=0.032 Score=43.85 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
-.++|.|+||+|||+|.-.++
T Consensus 37 ~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 678899999999999987665
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=92.40 E-value=0.042 Score=44.02 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
+..-.+.+.|++++|||+|+++|..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4557788999999999999999854
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=0.042 Score=42.43 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-|+|-|.-||||||+++.|.
T Consensus 4 k~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 679999999999999999875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.28 E-value=0.036 Score=43.38 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.++|.|+||+|||+|+-.++-
T Consensus 27 sl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5678899999999999877653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.27 E-value=0.036 Score=44.42 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
-++|.|.||+|||||+..+.
T Consensus 37 l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999976664
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=92.08 E-value=0.025 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++|+|=|.-|+||||+++.|...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999998643
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=92.05 E-value=0.034 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.++|.|=|.-|+||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 47899999999999999999864
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.93 E-value=0.049 Score=38.45 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=19.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l 40 (311)
+...+....+|.++||+|||+++-.+
T Consensus 3 ~~~~~~~~~ll~apTGsGKT~~~~~~ 28 (136)
T d1a1va1 3 AVPQSFQVAHLHAPTGSGKSTKVPAA 28 (136)
T ss_dssp CCCSSCEEEEEECCTTSCTTTHHHHH
T ss_pred CCccCCCEEEEEeCCCCCHHHHHHHH
Confidence 33445566788999999999887443
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.89 E-value=0.042 Score=42.55 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=17.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
-.+.|.|+||+|||+|.-.++
T Consensus 27 ~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 27 RSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 567889999999999975543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.72 E-value=0.044 Score=42.71 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
-.++|.|+||+|||+|...+.
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 567889999999999987765
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.51 E-value=0.058 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..+|.|=|.-|+||||+++.|...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 479999999999999999999764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.057 Score=43.10 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-+.|.|+||+|||||+=.+.
T Consensus 55 ~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEecCCCcHHHHHHHHHH
Confidence 567899999999999976554
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.54 E-value=0.56 Score=35.23 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....+++.|++|+|||++...+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988774
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.08 Score=42.11 Aligned_cols=20 Identities=35% Similarity=0.282 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|+|++|+|||||+-.|.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46689999999999986653
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.44 E-value=0.066 Score=43.23 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHH-HHH
Q 021534 22 NLVLVGRTGNGKSATA-NSI 40 (311)
Q Consensus 22 ~I~v~G~~g~GKSSli-n~l 40 (311)
.++|+|.+|+||||.+ +.+
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHH
Confidence 3688899999999864 443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.96 E-value=0.084 Score=43.00 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=13.6
Q ss_pred EEEEEcCCCCcHHHHH
Q 021534 22 NLVLVGRTGNGKSATA 37 (311)
Q Consensus 22 ~I~v~G~~g~GKSSli 37 (311)
.++|.|.+|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3788999999999764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.72 E-value=0.19 Score=40.04 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.-+.+.|++++|||+|+-.+..
T Consensus 58 ~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 58 RITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCccchHHHHHHHHH
Confidence 5678899999999999877654
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.61 E-value=0.17 Score=42.12 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCcHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANS 39 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~ 39 (311)
....+|.|+||+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 46788899999999998754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.20 E-value=0.18 Score=40.58 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
-..-+++++|.+|+|||+|+..+..
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 3457899999999999999988765
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=0.25 Score=38.46 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l 40 (311)
...++|.|++.+||||++.++
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHH
Confidence 355789999999999999886
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.71 E-value=0.31 Score=37.58 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
.++|.|++.+||||++.++.
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhH
Confidence 47899999999999998863
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.61 E-value=0.35 Score=37.84 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.-|+|.|++|+||+++...|-.
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHHH
Confidence 4478999999999999998853
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.95 E-value=0.45 Score=37.72 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-+.+.|++|+|||||+-.+.
T Consensus 61 ~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 61 RVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred eeEEEecCCCcHHHHHHHHHH
Confidence 567889999999999975554
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.03 E-value=0.57 Score=36.92 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=17.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l 40 (311)
+...-|++.|..|+||||+.-.|
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 34456677799999999975444
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=80.40 E-value=0.58 Score=37.11 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l 40 (311)
...|.+.|..|+||||+.-+|
T Consensus 8 p~~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHH
Confidence 356788999999999976554
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.37 E-value=0.53 Score=37.41 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-+++++|.+|+|||+|+-.+.
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHH
Confidence 3579999999999999977665
|