Citrus Sinensis ID: 021540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MNDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHcEEEEEEEccccEEEEEEccEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccccEEEEEcccccEEEEcccccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccHHHEEEEccEEEEEEEcccEEEEEcccEEccccccHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccEEEEEEcEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccEEEEEEEccccEEEcEEEEEcccccccccEEEccccc
Coil and Loop (DISEMBL)
mndncdncdtnslgswkdaaetnsmgswkdgtnggsepdqeasassglafeshlaetpsprmswadmaqedeleeegeeeQCKVNKQVNDGVNVLKEEssvskvvqkpmlsreEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNemgtkgelkektysapkkwmrgkgritiqfgccynyatdkngnppgilqnepvdplpHLFKVIIRRLVKwhvlpptcvpdscivniyeegdcipphidnhdfvrpfctvsflsecnivfgsnlkvvgagefagsipialpvg
Flexible Loop (DISEMBL)
mndncdncdtnslgswkdaAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWADMAQEDELEEEGEEEQCKVNKQVNdgvnvlkeessvskvvqkpmlsreerehmrfmhvrrkkdficlEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTlnemgtkgelkektysapkkwmrgkgRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGefagsipialpvg
Low Complexity Region (SEG)
MNDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWADMAQedeleeegeeeQCKVNKQVNDGVNVLkeessvskvvQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG
Disordered region (IsUnstruct)
**********************************************************************************************************************RFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIA****
Disordered Region (DISOPRED)
********************************************************************************************************************************FICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGN***ILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALP**
Disordered Region (DISEMBL)
*********TNSLGSWKDAAETNSMGSWK*******************AFESHLAETPSPRMSWAD****************KVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG
Disordered Region (DISPRO)
**************************************************************************************************************SREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIAL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q66JG8	358	RNA demethylase ALKBH5 OS	yes	no	0.434	0.377	0.319	5e-08
Q6GPB5	360	RNA demethylase ALKBH5 OS	N/A	no	0.302	0.261	0.35	1e-07
D3ZKD3	395	RNA demethylase ALKBH5 OS	yes	no	0.344	0.270	0.330	1e-07
Q6P6C2	394	RNA demethylase ALKBH5 OS	yes	no	0.344	0.271	0.330	2e-07
Q3TSG4	395	RNA demethylase ALKBH5 OS	yes	no	0.344	0.270	0.330	2e-07
E1BH29	394	RNA demethylase ALKBH5 OS	yes	no	0.344	0.271	0.330	2e-07
Q08BA6	352	RNA demethylase ALKBH5 OS	yes	no	0.424	0.375	0.312	5e-07

>sp|Q66JG8|ALKB5_XENTR RNA demethylase ALKBH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNG 211
           +FS  E  RI   +  +     KG  +E T        R   R    FG  Y Y      
Sbjct: 60  LFSPDECARIEAKIDEVVSRAEKGLYREHTVD------RAPLRNKYFFGEGYTYGAQLQR 113

Query: 212 NPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHID 267
             PG  +  P   VD +P  + +++IRRLV+  V+P   V +S ++N Y+ G CI  H+D
Sbjct: 114 RGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFV-NSAVINDYQPGGCIVSHVD 172

Query: 268 N-HDFVRPFCTVSFLSECNIVFGSNLK 293
             H F RP  +VSF S+  + FG   +
Sbjct: 173 PIHIFERPIVSVSFFSDSALCFGCKFQ 199

Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.
Xenopus tropicalis (taxid: 8364)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp|Q6GPB5|ALKB5_XENLA RNA demethylase ALKBH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 199 FGCCYNYATDKNGNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVN 254
           FG  Y Y        PG  +  P   VD +P  + +++IRRLV+  ++P   V +S ++N
Sbjct: 103 FGEGYTYGAQLQRRGPGQERLYPKGEVDEIPGWVHELVIRRLVERRIIPEGFV-NSAVIN 161

Query: 255 IYEEGDCIPPHIDN-HDFVRPFCTVSFLSECNIVFGSNLK 293
            Y+ G CI  H+D  H F RP  +VSF S+  + FG   +
Sbjct: 162 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQ 201

Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5 OS=Rattus norvegicus GN=Alkbh5 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 199 FGCCYNYATDKNGNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVN 254
           FG  Y Y        PG  +  P   VD +P  + +++I++LV+  V+P   V +S ++N
Sbjct: 136 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVIN 194

Query: 255 IYEEGDCIPPHIDN-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPI 306
            Y+ G CI  H+D  H F RP  +VSF S+  + FG     K +   E   S+P+
Sbjct: 195 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 249

Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m(6)A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. Requires molecular oxygen, alpha-ketoglutarate and iron. Demethylation of m(6)A mRNA affects mRNA processing and export and is required for spermatogenesis.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q6P6C2|ALKB5_HUMAN RNA demethylase ALKBH5 OS=Homo sapiens GN=ALKBH5 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 199 FGCCYNYATDKNGNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVN 254
           FG  Y Y        PG  +  P   VD +P  + +++I++LV+  V+P   V +S ++N
Sbjct: 135 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVIN 193

Query: 255 IYEEGDCIPPHIDN-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPI 306
            Y+ G CI  H+D  H F RP  +VSF S+  + FG     K +   E   S+P+
Sbjct: 194 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 248

Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5 OS=Mus musculus GN=Alkbh5 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 199 FGCCYNYATDKNGNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVN 254
           FG  Y Y        PG  +  P   VD +P  + +++I++LV+  V+P   V +S ++N
Sbjct: 136 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPDWVHQLVIQKLVEHRVIPEGFV-NSAVIN 194

Query: 255 IYEEGDCIPPHIDN-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPI 306
            Y+ G CI  H+D  H F RP  +VSF S+  + FG     K +   E   S+P+
Sbjct: 195 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 249

Probable dioxygenase that requires molecular oxygen, alpha-ketoglutarate and iron.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|E1BH29|ALKB5_BOVIN RNA demethylase ALKBH5 OS=Bos taurus GN=ALKBH5 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 199 FGCCYNYATDKNGNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVN 254
           FG  Y Y        PG  +  P   VD +P  + +++I++LV+  V+P   V +S ++N
Sbjct: 135 FGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVIN 193

Query: 255 IYEEGDCIPPHIDN-HDFVRPFCTVSFLSECNIVFGS--NLKVVGAGEFAGSIPI 306
            Y+ G CI  H+D  H F RP  +VSF S+  + FG     K +   E   S+P+
Sbjct: 194 DYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 248

Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m(6)A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. Requires molecular oxygen, alpha-ketoglutarate and iron. Demethylation of m(6)A mRNA affects mRNA processing and export and is required for spermatogenesis.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5 OS=Danio rerio GN=alkbh5 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 12/144 (8%)

Query: 151 GIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKN 210
            IF+  E  RI   +  +     KG  +E T        R   R    FG  Y Y     
Sbjct: 61  SIFTLEECARIEAKIDEVVAKADKGLYREHTVD------RAPLRNKYFFGEGYTYGAQLE 114

Query: 211 GNPPG---ILQNEPVDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
              PG   +     VD +P  + +++I RLV   V+P   V +S ++N Y+ G CI  H+
Sbjct: 115 KRGPGQERLYSKGEVDDIPDWVHELVIDRLVTHGVIPEGFV-NSAVINDYQPGGCIVSHV 173

Query: 267 DN-HDFVRPFCTVSFLSECNIVFG 289
           D  H F RP  +VSF S+  + FG
Sbjct: 174 DPIHIFERPIVSVSFFSDSALCFG 197

Dioxygenase that demethylates RNA by oxidative demethylation: specifically demethylates N(6)-methyladenosine (m(6)A) RNA, the most prevalent internal modification of messenger RNA (mRNA) in higher eukaryotes. Requires molecular oxygen, alpha-ketoglutarate and iron.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
297735021	547	unnamed protein product [Vitis vinifera]	0.983	0.559	0.733	1e-123
225431153	510	PREDICTED: uncharacterized protein LOC10	0.983	0.6	0.733	1e-123
147857702	849	hypothetical protein VITISV_020466 [Viti	0.983	0.360	0.733	1e-122
449434166	499	PREDICTED: uncharacterized protein LOC10	0.971	0.605	0.707	1e-119
255579797	511	conserved hypothetical protein [Ricinus	0.974	0.592	0.690	1e-114
356552441	522	PREDICTED: uncharacterized protein LOC10	0.890	0.530	0.670	1e-112
356562125	520	PREDICTED: uncharacterized protein LOC10	0.877	0.525	0.679	1e-111
145328752	433	2-oxoglutarate (2OG) and Fe(II)-dependen	0.932	0.669	0.625	1e-102
15227938	507	2-oxoglutarate (2OG) and Fe(II)-dependen	0.932	0.571	0.625	1e-102
297836514	500	oxidoreductase [Arabidopsis lyrata subsp	0.932	0.58	0.622	2e-99

>gi|297735021|emb|CBI17383.3| unnamed protein product [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/312 (73%), Positives = 259/312 (83%), Gaps = 6/312 (1%)

Query: 1   MNDNCDNCDTNSLGSWKDA-AETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPS 59
           ++ +CDNCD+NSLGSWKD  A+TNS+GS+KD  N  SEP  EAS S  LA ES   ETPS
Sbjct: 122 IDSHCDNCDSNSLGSWKDNDADTNSVGSFKDEVNEWSEPVPEASTSE-LASESPSIETPS 180

Query: 60  PRMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMR 119
           PR+SWADMAQEDELEEE E E  K +   N        E  VSKV +K  L RE+RE++R
Sbjct: 181 PRISWADMAQEDELEEEEEHEANKRSIDENSSTG----EVGVSKVPRKAELPREQREYIR 236

Query: 120 FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKE 179
           F +V+RKKDFICLE++KGK VNIL GLELH GIFSAAEQKRIVDF++ L EMG  G+LKE
Sbjct: 237 FRNVQRKKDFICLERVKGKFVNILDGLELHVGIFSAAEQKRIVDFIYELQEMGRNGQLKE 296

Query: 180 KTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKW 239
           +TYSAP+KWMRGKGR+TIQFGCCYNYATDKNGNPPGILQNE VDP+P LFKVIIRRLV+W
Sbjct: 297 RTYSAPQKWMRGKGRVTIQFGCCYNYATDKNGNPPGILQNEVVDPIPPLFKVIIRRLVRW 356

Query: 240 HVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299
           HVLPP+CVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSEC+IVFG+NLK++GAGE
Sbjct: 357 HVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGTNLKILGAGE 416

Query: 300 FAGSIPIALPVG 311
           F G   I LPVG
Sbjct: 417 FVGPFAIPLPVG 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431153|ref|XP_002268446.1| PREDICTED: uncharacterized protein LOC100250563 [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/312 (73%), Positives = 259/312 (83%), Gaps = 6/312 (1%)

Query: 1   MNDNCDNCDTNSLGSWKDA-AETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPS 59
           ++ +CDNCD+NSLGSWKD  A+TNS+GS+KD  N  SEP  EAS S  LA ES   ETPS
Sbjct: 85  IDSHCDNCDSNSLGSWKDNDADTNSVGSFKDEVNEWSEPVPEASTSE-LASESPSIETPS 143

Query: 60  PRMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMR 119
           PR+SWADMAQEDELEEE E E  K +   N        E  VSKV +K  L RE+RE++R
Sbjct: 144 PRISWADMAQEDELEEEEEHEANKRSIDENSSTG----EVGVSKVPRKAELPREQREYIR 199

Query: 120 FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKE 179
           F +V+RKKDFICLE++KGK VNIL GLELH GIFSAAEQKRIVDF++ L EMG  G+LKE
Sbjct: 200 FRNVQRKKDFICLERVKGKFVNILDGLELHVGIFSAAEQKRIVDFIYELQEMGRNGQLKE 259

Query: 180 KTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKW 239
           +TYSAP+KWMRGKGR+TIQFGCCYNYATDKNGNPPGILQNE VDP+P LFKVIIRRLV+W
Sbjct: 260 RTYSAPQKWMRGKGRVTIQFGCCYNYATDKNGNPPGILQNEVVDPIPPLFKVIIRRLVRW 319

Query: 240 HVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299
           HVLPP+CVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSEC+IVFG+NLK++GAGE
Sbjct: 320 HVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGTNLKILGAGE 379

Query: 300 FAGSIPIALPVG 311
           F G   I LPVG
Sbjct: 380 FVGPFAIPLPVG 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857702|emb|CAN80815.1| hypothetical protein VITISV_020466 [Vitis vinifera]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/312 (73%), Positives = 258/312 (82%), Gaps = 6/312 (1%)

Query: 1   MNDNCDNCDTNSLGSWKD-AAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPS 59
           ++ +CDNCD+NSLGSWKD  A+TNS+GS+KD  N  SEP  EAS S  LA ES   ETPS
Sbjct: 424 IDSHCDNCDSNSLGSWKDBXADTNSVGSFKDEVNEWSEPVPEASTSE-LASESPSIETPS 482

Query: 60  PRMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMR 119
           PR+SWADMAQEDELEEE E E  K +   N        E  VSKV +K  L RE+RE++R
Sbjct: 483 PRISWADMAQEDELEEEEEHEANKRSIDENSSTG----EVGVSKVPRKAELPREQREYIR 538

Query: 120 FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKE 179
           F +V+RKKDFICLE++KGK VNIL GLELH GIFSAAEQKRIVDF++ L EMG  G+LKE
Sbjct: 539 FRNVQRKKDFICLERVKGKFVNILDGLELHVGIFSAAEQKRIVDFIYELQEMGRNGQLKE 598

Query: 180 KTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKW 239
           +TYSAP+KWMRGKGR+TIQFGCCYNYATDKNGNPPGILQNE VDP+P LFKVIIRRLV+W
Sbjct: 599 RTYSAPQKWMRGKGRVTIQFGCCYNYATDKNGNPPGILQNEVVDPIPPLFKVIIRRLVRW 658

Query: 240 HVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299
           HVLPP+CVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECBIVFG+NLK +GAGE
Sbjct: 659 HVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECBIVFGTNLKXLGAGE 718

Query: 300 FAGSIPIALPVG 311
           F G   I LPVG
Sbjct: 719 FVGPFAIPLPVG 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434166|ref|XP_004134867.1| PREDICTED: uncharacterized protein LOC101203292 [Cucumis sativus] gi|449531418|ref|XP_004172683.1| PREDICTED: uncharacterized protein LOC101225118 [Cucumis sativus]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 253/308 (82%), Gaps = 6/308 (1%)

Query: 6   DNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQ-EASASSGLAFESHLAETPSPRMSW 64
           D  D NSLGSWKD AETNS+GSWKDG N G+E D    ++SS L  + +  +T  PRMSW
Sbjct: 84  DAFDANSLGSWKDEAETNSLGSWKDGMNAGNEADGGPETSSSELPSKLNSTKTSGPRMSW 143

Query: 65  ADMAQEDELEEEGEEEQC-KVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFMHV 123
           ADM QEDELEEE +E +  K    VN+    L    ++SKV+++P LSRE+REH+RFM+V
Sbjct: 144 ADMTQEDELEEEEDEYESEKRLVSVNESTRKL----TISKVIERPKLSREQREHIRFMNV 199

Query: 124 RRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS 183
            RKKDFICLE+ KGK+VNIL GLELH  IFSAAEQ RIVD V+ L EMG +GEL+E+T+S
Sbjct: 200 GRKKDFICLERFKGKLVNILEGLELHTCIFSAAEQTRIVDHVYALQEMGKRGELRERTFS 259

Query: 184 APKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLP 243
           APKKWM+GKGR+T+QFGCCYNYA DKNGNPPGIL++E VDPLP LFKVIIRRLV+WHVLP
Sbjct: 260 APKKWMKGKGRVTMQFGCCYNYAPDKNGNPPGILRSEIVDPLPSLFKVIIRRLVRWHVLP 319

Query: 244 PTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGS 303
           PTCVPDSCIVNIY+EGDCIPPHIDNHDFVRPFCTVSFLSECNIVFG+NL +VG GEF+G 
Sbjct: 320 PTCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGTNLSIVGPGEFSGP 379

Query: 304 IPIALPVG 311
           I I LPVG
Sbjct: 380 IAIPLPVG 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579797|ref|XP_002530736.1| conserved hypothetical protein [Ricinus communis] gi|223529700|gb|EEF31642.1| conserved hypothetical protein [Ricinus communis]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/310 (69%), Positives = 251/310 (80%), Gaps = 7/310 (2%)

Query: 6   DNCDTNSLGSWKDAA--ETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMS 63
           DNC+ NS  S KD    +TNS+GSWKDG+NG SEP  E   SSG+       + P+ R+S
Sbjct: 91  DNCENNSTESNKDGDGDDTNSLGSWKDGSNGWSEPVSEP-PSSGILGAPPSIQVPTHRIS 149

Query: 64  WADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKV--VQKPMLSREEREHMRFM 121
           WADMAQEDE EEE EEE+    ++++  +  L   +   K+  V+KP LSRE+RE +RF 
Sbjct: 150 WADMAQEDEFEEEVEEEE--DRRELDKRMVTLSASTGKMKISTVEKPKLSREQRESIRFK 207

Query: 122 HVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKT 181
            V+RKKDFICLE++KGK VNIL GLELH  +FSA EQ RIV++VH L EMG +GELKE+T
Sbjct: 208 SVKRKKDFICLERVKGKFVNILEGLELHTCVFSAVEQNRIVNYVHELEEMGKRGELKERT 267

Query: 182 YSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHV 241
           Y+AP+KWMRGKGR+TIQFGCCYNYATDKNGNPPGILQ+E VDP+PHLFKVIIRRL+KWHV
Sbjct: 268 YTAPQKWMRGKGRVTIQFGCCYNYATDKNGNPPGILQSETVDPIPHLFKVIIRRLIKWHV 327

Query: 242 LPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFA 301
           LPPTCVPDSCIVNIY+EGDCIPPHIDNHDF RPFCTVSF+SECNIVFGSNLKV+G GEF+
Sbjct: 328 LPPTCVPDSCIVNIYDEGDCIPPHIDNHDFNRPFCTVSFVSECNIVFGSNLKVLGPGEFS 387

Query: 302 GSIPIALPVG 311
           GSI I LPVG
Sbjct: 388 GSIAIPLPVG 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552441|ref|XP_003544576.1| PREDICTED: uncharacterized protein LOC100797674 [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/310 (67%), Positives = 235/310 (75%), Gaps = 33/310 (10%)

Query: 3   DNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRM 62
           DNCDNCD +SLGSWKD AE N+                               ETPS R+
Sbjct: 86  DNCDNCDAHSLGSWKDGAEVNNSN----------------------------VETPSQRI 117

Query: 63  SWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVV-QKPMLSREEREHMRFM 121
           SWADMAQED+   + E+     N  V D  N     S V+KVV +KP L RE+RE++RFM
Sbjct: 118 SWADMAQEDDEFGDEEDSNNGGNFAVGDS-NAF---SHVAKVVAEKPTLPREQREYIRFM 173

Query: 122 HVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKT 181
           +VRRKKDFIC E++ GK+VNIL GLELH GIFSAAEQKRIV++V +L EMG KGELKE+T
Sbjct: 174 NVRRKKDFICFERVNGKLVNILEGLELHTGIFSAAEQKRIVNYVASLQEMGRKGELKEQT 233

Query: 182 YSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHV 241
           +SAP+KWMRGKGR TIQFGCCYNYA D++GNPPGIL N  VDP+P LFKVIIRRL+KWHV
Sbjct: 234 FSAPQKWMRGKGRQTIQFGCCYNYAVDRDGNPPGILGNGMVDPIPALFKVIIRRLIKWHV 293

Query: 242 LPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFA 301
           LPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLK+VG GEF 
Sbjct: 294 LPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFD 353

Query: 302 GSIPIALPVG 311
           GSI I LP+G
Sbjct: 354 GSIAIPLPMG 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562125|ref|XP_003549324.1| PREDICTED: uncharacterized protein LOC100787321 [Glycine max]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/306 (67%), Positives = 231/306 (75%), Gaps = 33/306 (10%)

Query: 6   DNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPRMSWA 65
           DNCD +SLGSWKD AE NS                               ETPS RMSWA
Sbjct: 89  DNCDNHSLGSWKDGAEVNSSN----------------------------VETPSQRMSWA 120

Query: 66  DMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFMHVRR 125
           DMAQED+  E G EE    N   N  +      S V+KV +KP L RE+RE++RFM+VRR
Sbjct: 121 DMAQEDD--EFGVEED-NNNNGGNVVMGDSNASSDVAKV-EKPTLPREQREYIRFMNVRR 176

Query: 126 KKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAP 185
           KKDFIC E++ GK+VNIL GLELH GIFSAAEQKRIV++V +L EMG KGELKE+T+SAP
Sbjct: 177 KKDFICFERVHGKLVNILEGLELHTGIFSAAEQKRIVNYVASLQEMGKKGELKERTFSAP 236

Query: 186 KKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPT 245
           +KWMRGKGR TIQFGCCYNYA D++GNPPGIL N  VDP+P LFKVIIRRLVKWHVLPPT
Sbjct: 237 QKWMRGKGRQTIQFGCCYNYA-DRDGNPPGILTNGMVDPIPDLFKVIIRRLVKWHVLPPT 295

Query: 246 CVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIP 305
           CVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLK+VG GEF GSI 
Sbjct: 296 CVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFDGSIA 355

Query: 306 IALPVG 311
           I LP+G
Sbjct: 356 IPLPMG 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145328752|ref|NP_001077911.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|334184285|ref|NP_001189546.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|330251613|gb|AEC06707.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|330251614|gb|AEC06708.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/310 (62%), Positives = 236/310 (76%), Gaps = 20/310 (6%)

Query: 2   NDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPR 61
           ++N ++CD +SLGSWK +               GS P+     SS L     + ET SPR
Sbjct: 18  SENGEDCDNHSLGSWKGSEIV-----------FGSFPED---FSSVLQSRPAVVETASPR 63

Query: 62  MSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFM 121
           M WADMAQEDE +EE EEE+ + +            ++S  K  +KP LSR++RE++R +
Sbjct: 64  MRWADMAQEDEFDEEEEEEEEERDSSRKGF------DASSMKTPEKPKLSRDQRENLRLI 117

Query: 122 HVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKT 181
           +V+RKKDFICLE++KGKIVN+L GLELH G+FSA EQKRIVD V+ L E G +GELK++T
Sbjct: 118 NVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQLQEKGRRGELKKRT 177

Query: 182 YSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHV 241
           ++AP KWMRGKGR TIQFGCCYNYA D+ GNPPGILQ E VDPLPHLFKVIIR+L+KWHV
Sbjct: 178 FTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPHLFKVIIRKLIKWHV 237

Query: 242 LPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFA 301
           LPPTCVPDSCIVNIY+EGDCIPPHIDNHDF+RPFCT+SFLSEC+I+FGSNLKV G G+F+
Sbjct: 238 LPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLKVEGPGDFS 297

Query: 302 GSIPIALPVG 311
           GS  I LPVG
Sbjct: 298 GSYSIPLPVG 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227938|ref|NP_179387.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gi|4406821|gb|AAD20129.1| hypothetical protein [Arabidopsis thaliana] gi|34365749|gb|AAQ65186.1| At2g17970 [Arabidopsis thaliana] gi|51970124|dbj|BAD43754.1| hypothetical protein [Arabidopsis thaliana] gi|330251612|gb|AEC06706.1| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/310 (62%), Positives = 236/310 (76%), Gaps = 20/310 (6%)

Query: 2   NDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPR 61
           ++N ++CD +SLGSWK +               GS P+     SS L     + ET SPR
Sbjct: 92  SENGEDCDNHSLGSWKGSEIV-----------FGSFPED---FSSVLQSRPAVVETASPR 137

Query: 62  MSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFM 121
           M WADMAQEDE +EE EEE+ + +            ++S  K  +KP LSR++RE++R +
Sbjct: 138 MRWADMAQEDEFDEEEEEEEEERDSSRKGF------DASSMKTPEKPKLSRDQRENLRLI 191

Query: 122 HVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKT 181
           +V+RKKDFICLE++KGKIVN+L GLELH G+FSA EQKRIVD V+ L E G +GELK++T
Sbjct: 192 NVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQLQEKGRRGELKKRT 251

Query: 182 YSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHV 241
           ++AP KWMRGKGR TIQFGCCYNYA D+ GNPPGILQ E VDPLPHLFKVIIR+L+KWHV
Sbjct: 252 FTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPHLFKVIIRKLIKWHV 311

Query: 242 LPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFA 301
           LPPTCVPDSCIVNIY+EGDCIPPHIDNHDF+RPFCT+SFLSEC+I+FGSNLKV G G+F+
Sbjct: 312 LPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLKVEGPGDFS 371

Query: 302 GSIPIALPVG 311
           GS  I LPVG
Sbjct: 372 GSYSIPLPVG 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836514|ref|XP_002886139.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297331979|gb|EFH62398.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/310 (62%), Positives = 232/310 (74%), Gaps = 20/310 (6%)

Query: 2   NDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSPR 61
           ++N ++CD + LGSWK++      GS  +   G   P + A           + ET SPR
Sbjct: 87  SENGEDCDNHPLGSWKESEIV--FGSISE-VLGSVLPSRPA-----------VVETASPR 132

Query: 62  MSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRFM 121
           MSWADM QED+  +E EEE+ +      D      + SS+   V KP LSR++RE++R M
Sbjct: 133 MSWADMTQEDDEFDEEEEEEEQ-----RDSSRKGFDASSMRTPV-KPKLSRDQRENLRLM 186

Query: 122 HVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKT 181
           +V+RKKDFICLE++KGKIVN+L GLELH G+FSA EQKRIVD V+ L E G KGELK++T
Sbjct: 187 NVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQLQEKGRKGELKKRT 246

Query: 182 YSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHV 241
           ++AP KWMRGKGR TIQFGCCYNYA D+ GNPPGILQ E VDPLP LFKVIIRRL+KWHV
Sbjct: 247 FTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPPLFKVIIRRLIKWHV 306

Query: 242 LPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFA 301
           LPPTCVPDSCIVNIY+E DCIPPHIDNHDF+RPFCT+SFLSEC+I+FGSNL V G GEF+
Sbjct: 307 LPPTCVPDSCIVNIYDESDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLNVEGPGEFS 366

Query: 302 GSIPIALPVG 311
           GS  I LPVG
Sbjct: 367 GSYSIPLPVG 376

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2060964	507	AT2G17970 [Arabidopsis thalian	0.958	0.587	0.599	1.2e-95
TAIR|locus:2135124	520	AT4G36090 [Arabidopsis thalian	0.913	0.546	0.604	4e-90
TAIR|locus:2028486	331	AT1G48980 [Arabidopsis thalian	0.630	0.592	0.684	1.7e-73
TAIR|locus:2139345	569	AT4G02940 [Arabidopsis thalian	0.610	0.333	0.292	5.7e-20
TAIR|locus:2006717	601	AT1G14710 "AT1G14710" [Arabido	0.572	0.296	0.324	1.1e-19
TAIR|locus:2066385	438	AT2G48080 [Arabidopsis thalian	0.556	0.394	0.276	1.5e-17
UNIPROTKB|F1NIA5	375	ALKBH5 "Uncharacterized protei	0.418	0.346	0.340	1.3e-08
UNIPROTKB|Q66JG8	358	alkbh5 "RNA demethylase ALKBH5	0.418	0.363	0.340	1.1e-07
RGD|1309496	395	Alkbh5 "alkB, alkylation repai	0.472	0.372	0.306	2.3e-07
UNIPROTKB|E1BH29	394	ALKBH5 "RNA demethylase ALKBH5	0.472	0.373	0.306	3e-07

TAIR|locus:2060964 AT2G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 187/312 (59%), Positives = 226/312 (72%)

Query:     2 NDNCDNCDTNSLGSWKDAAETNSMGSWKDGTN--GGSEPDQEASASSGLAFESHLAETPS 59
             N+  DN D  S     +  + +S+GSWK G+    GS P+     SS L     + ET S
Sbjct:    82 NNVDDNYDEKSENG--EDCDNHSLGSWK-GSEIVFGSFPED---FSSVLQSRPAVVETAS 135

Query:    60 PRMSWADMAQXXXXXXXXXXXQCKVNKQVNDGVNVLXXXXXXXXXXQKPMLSREEREHMR 119
             PRM WADMAQ           + +       G +            +KP LSR++RE++R
Sbjct:   136 PRMRWADMAQEDEFDEEEEEEE-EERDSSRKGFDA-----SSMKTPEKPKLSRDQRENLR 189

Query:   120 FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKE 179
              ++V+RKKDFICLE++KGKIVN+L GLELH G+FSA EQKRIVD V+ L E G +GELK+
Sbjct:   190 LINVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQLQEKGRRGELKK 249

Query:   180 KTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKW 239
             +T++AP KWMRGKGR TIQFGCCYNYA D+ GNPPGILQ E VDPLPHLFKVIIR+L+KW
Sbjct:   250 RTFTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPHLFKVIIRKLIKW 309

Query:   240 HVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299
             HVLPPTCVPDSCIVNIY+EGDCIPPHIDNHDF+RPFCT+SFLSEC+I+FGSNLKV G G+
Sbjct:   310 HVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLKVEGPGD 369

Query:   300 FAGSIPIALPVG 311
             F+GS  I LPVG
Sbjct:   370 FSGSYSIPLPVG 381

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2135124 AT4G36090 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 176/291 (60%), Positives = 212/291 (72%)

Query:    22 TNSMGSWKDGTNG-GSEPDQEASASSGLAFESHLAETPSPRMSWADMAQXXXXXXXXXXX 80
             ++S+ S K G    GS  D  + A    + +S ++E  S +MSWADM +           
Sbjct:   101 SHSLDSLKAGAFVFGSLSDSVSHAMP--SSQSTVSEAASAQMSWADMGEEDGLEEEDQ-- 156

Query:    81 QCKVNKQVNDGVNVLXXXXXXXXXXQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIV 140
               K N+  + GV+V           +K  LSREERE  RFM+V++ K F C EK++G+ V
Sbjct:   157 --KENELGSHGVDVSPSVGDSMKTPEKRKLSREERERYRFMNVKKMKVFSCYEKVRGRSV 214

Query:   141 NILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFG 200
             NIL GLELH G+FSA EQK+IVDFV+ L E G +GEL+E+T++AP KWMRGKGR+TIQFG
Sbjct:   215 NILEGLELHTGVFSAVEQKKIVDFVYELQEKGRRGELRERTFTAPHKWMRGKGRVTIQFG 274

Query:   201 CCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGD 260
             CCYNYA DK GNPPGILQ   VDP+P +FKVII+RLV WHVLPPTCVPDSCIVNIYEE D
Sbjct:   275 CCYNYAPDKAGNPPGILQRGDVDPMPSIFKVIIKRLVGWHVLPPTCVPDSCIVNIYEEDD 334

Query:   261 CIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG 311
             CIPPHIDNHDF+RPFCTVSFLSECNI+FGSNLKV+G GEF+GS  I LPVG
Sbjct:   335 CIPPHIDNHDFLRPFCTVSFLSECNILFGSNLKVLGPGEFSGSYSIPLPVG 385

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2028486 AT1G48980 [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 139/203 (68%), Positives = 168/203 (82%)

Query:   110 LSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLN 169
             LSR++R H+R ++V+RK+DF+CLEK+ G++VNIL GLELH  +F+AAEQ+RIVD V  L 
Sbjct:    68 LSRKQRTHIRAINVKRKRDFVCLEKVNGELVNILEGLELHTEVFNAAEQRRIVDKVCELQ 127

Query:   170 EMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLF 229
             E   KGELK + ++A     +GKGR TIQFGCC+NY T K GN  GIL++E VDPLPHLF
Sbjct:   128 EKVQKGELK-RAFTA-----QGKGRSTIQFGCCFNYRTSKTGNLAGILKHETVDPLPHLF 181

Query:   230 KVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFG 289
             KVIIRRLVKWHVLPPTCVPD C+VNIY+EGDCIPPHID+HDF+RPFCTVSFLSECNI+FG
Sbjct:   182 KVIIRRLVKWHVLPPTCVPDCCVVNIYDEGDCIPPHIDHHDFLRPFCTVSFLSECNILFG 241

Query:   290 SNLKVVGAGEFAG-SIPIALPVG 311
             SNLKV   GE++G S  + LPVG
Sbjct:   242 SNLKVEETGEYSGGSYSLPLPVG 264

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2139345 AT4G02940 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/195 (29%), Positives = 98/195 (50%)

Query:   119 RFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELK 178
             R   ++  K F   E++KG  VN++ GL+L+E +    E  +++DFV  L E G  G+L 
Sbjct:   215 RSCEIKPIKGFQAKEQVKGHTVNVVKGLKLYEELLKEDEISKLLDFVAELREAGINGKLA 274

Query:   179 EKTYSAPKKWMRGKGRITIQFGC-CYNYA-TDKNGNPPGILQNEPVDPLPHLFKVIIRRL 236
              +++    K ++G  R  IQ G   + +   D+N N      N  ++P+P L + +I   
Sbjct:   275 GESFILFNKQIKGNKRELIQLGVPIFGHVKADENSNDTNNSVN--IEPIPPLLESVIDHF 332

Query:   237 VKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVG 296
             V W ++P    P+ C++N +EEG+   P +      +P  T+  LSE  + +G  L    
Sbjct:   333 VTWRLIPEYKRPNGCVINFFEEGEYSQPFLKPPHLEQPISTL-VLSESTMAYGRILSSDN 391

Query:   297 AGEFAGSIPIALPVG 311
              G F G + ++L  G
Sbjct:   392 EGNFRGPLTLSLKQG 406

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2006717 AT1G14710 "AT1G14710" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 60/185 (32%), Positives = 96/185 (51%)

Query:   127 KDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPK 186
             K F+  E    K+VN++ GL+L++ +  A E  ++V  V  L   G +G+L+ + Y   K
Sbjct:   242 KTFVVQEMYDAKMVNVVEGLKLYDKMLDANEVSQLVSLVTNLRLAGRRGQLQSEAYVGYK 301

Query:   187 KWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTC 246
             +  RG GR  IQ G       D   +   I ++  ++P+P     II RLV   ++P   
Sbjct:   302 RPNRGHGREMIQLGLPI---ADTPPDDDSI-KDRRIEPIPSALSDIIERLVSKQIIPVK- 356

Query:   247 VPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPI 306
              PD+CI++ + EGD   PH+    F RP   +S LSEC+  FG  +     G++ GS+ +
Sbjct:   357 -PDACIIDFFSEGDHSQPHMFVPWFGRPISVLS-LSECDYTFGRVIVSENPGDYKGSLKL 414

Query:   307 ALPVG 311
             +L  G
Sbjct:   415 SLTPG 419

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2066385 AT2G48080 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 54/195 (27%), Positives = 100/195 (51%)

Query:   123 VRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTY 182
             +++ K F   E ++G   N++ GL+L++ +F+  +  +++D ++ L E G   +L  +T+
Sbjct:   145 LKQSKRFSAKEHVRGHTANVVKGLKLYQDVFTRPQLSKLLDSINQLREAGRNHQLSGETF 204

Query:   183 SAPKKWMRGKGRITIQFGC-CYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHV 241
                 K  +G  R  +Q G   +   TD++           V+P+P L + +I  L++W +
Sbjct:   205 VLFNKNTKGTKRELLQLGVPIFGNTTDEHS----------VEPIPTLVQSVIDHLLQWRL 254

Query:   242 LPPTCVPDSCIVNIYEEGDCI-----PPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVG 296
             +P    P+ C++N ++E +       PPH+D     +P  T+  LSE  +VFG  L V  
Sbjct:   255 IPEYKRPNGCVINFFDEDEHSQPFQKPPHVD-----QPISTL-VLSESTMVFGHRLGVDN 308

Query:   297 AGEFAGSIPIALPVG 311
              G F GS+ + L  G
Sbjct:   309 DGNFRGSLTLPLKEG 323

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NIA5 ALKBH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 49/144 (34%), Positives = 71/144 (49%)

Query:   152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
             +FSA E  +I   +  +     KG  KE T   AP   +R K      FG  Y Y +   
Sbjct:    73 LFSAEECAKIEARIDDVVSRAEKGLYKEHTVDRAP---LRNK----YFFGEGYTYGSQLQ 125

Query:   211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
                PG  +  P   VD +P  +  ++IR+LV+  V+P   V +S ++N Y+ G CI  H+
Sbjct:   126 RRGPGQERLYPRGEVDAIPEWVHDLVIRKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 184

Query:   267 DN-HDFVRPFCTVSFLSECNIVFG 289
             D  H F RP  +VSF S+  + FG
Sbjct:   185 DPIHIFERPIVSVSFFSDSALCFG 208

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

UNIPROTKB|Q66JG8 alkbh5 "RNA demethylase ALKBH5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 49/144 (34%), Positives = 70/144 (48%)

Query:   152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
             +FS  E  RI   +  +     KG  +E T   AP   +R K      FG  Y Y     
Sbjct:    60 LFSPDECARIEAKIDEVVSRAEKGLYREHTVDRAP---LRNK----YFFGEGYTYGAQLQ 112

Query:   211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
                PG  +  P   VD +P  + +++IRRLV+  V+P   V +S ++N Y+ G CI  H+
Sbjct:   113 RRGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 171

Query:   267 DN-HDFVRPFCTVSFLSECNIVFG 289
             D  H F RP  +VSF S+  + FG
Sbjct:   172 DPIHIFERPIVSVSFFSDSALCFG 195

GO:0001666 "response to hypoxia" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006397 "mRNA processing" evidence=ISS

GO:0006406 "mRNA export from nucleus" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0016607 "nuclear speck" evidence=ISS

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=ISS

GO:0035515 "oxidative RNA demethylase activity" evidence=ISS

GO:0035553 "oxidative single-stranded RNA demethylation" evidence=ISS

RGD|1309496 Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 50/163 (30%), Positives = 76/163 (46%)

Query:   152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
             +FS  E  +I   +  +     KG   E T   AP   +R K      FG  Y Y     
Sbjct:    95 LFSQDECSKIEARIDEVVSRAEKGLYNEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 147

Query:   211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
                PG  +  P   VD +P  + +++I++LV+  V+P   V +S ++N Y+ G CI  H+
Sbjct:   148 KRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 206

Query:   267 DN-HDFVRPFCTVSFLSECNIVFGSNL--KVVGAGEFAGSIPI 306
             D  H F RP  +VSF S+  + FG     K +   E   S+P+
Sbjct:   207 DPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 249

GO:0001666 "response to hypoxia" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006397 "mRNA processing" evidence=ISO;ISS

GO:0006406 "mRNA export from nucleus" evidence=ISO;ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0016607 "nuclear speck" evidence=ISO;ISS

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=ISO;ISS

GO:0030154 "cell differentiation" evidence=IEA

GO:0035515 "oxidative RNA demethylase activity" evidence=ISO;ISS

GO:0035553 "oxidative single-stranded RNA demethylation" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BH29 ALKBH5 "RNA demethylase ALKBH5" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 50/163 (30%), Positives = 76/163 (46%)

Query:   152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
             +FS  E  +I   +  +     KG   E T   AP   +R K      FG  Y Y     
Sbjct:    94 LFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 146

Query:   211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
                PG  +  P   VD +P  + +++I++LV+  V+P   V +S ++N Y+ G CI  H+
Sbjct:   147 KRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 205

Query:   267 DN-HDFVRPFCTVSFLSECNIVFGSNL--KVVGAGEFAGSIPI 306
             D  H F RP  +VSF S+  + FG     K +   E   S+P+
Sbjct:   206 DPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 248

GO:0007283 "spermatogenesis" evidence=ISS

GO:0016607 "nuclear speck" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0035515 "oxidative RNA demethylase activity" evidence=ISS

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=ISS

GO:0035553 "oxidative single-stranded RNA demethylation" evidence=ISS

GO:0006406 "mRNA export from nucleus" evidence=ISS

GO:0006397 "mRNA processing" evidence=ISS

GO:0001666 "response to hypoxia" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	311
pfam13532	190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	4e-24

>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily

 Score = 96.6 bits (241), Expect = 4e-24
 Identities = 41/169 (24%), Positives = 56/169 (33%), Gaps = 18/169 (10%)

Query: 145 GLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYN 204
           GL L  G  SA EQ  ++  +              K  S         G +T   G  Y 
Sbjct: 1   GLVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTD--GPGYR 58

Query: 205 YATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPP 264
           Y+          +  EP  P P +   +  RL      P    P++C+VN Y  G  +  
Sbjct: 59  YSGTP-------VTGEPWPPFPAVLLQLAERLAAAAGPPG-FEPNACLVNFYRPGARMGL 110

Query: 265 HIDNH--DFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG 311
           H D    DF  P  +VS        FG      G      +I + L  G
Sbjct: 111 HQDKDELDFGAPIVSVSLGDPALFRFG------GKTRDDPTIALPLESG 153

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
KOG4176	323	consensus Uncharacterized conserved protein [Funct	100.0
PF13532	194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.89
KOG3200	224	consensus Uncharacterized conserved protein [Funct	99.88
PRK15401	213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.85
TIGR00568	169	alkb DNA alkylation damage repair protein AlkB. Pr	99.81
COG3145	194	AlkB Alkylated DNA repair protein [DNA replication	99.7
KOG3959	306	consensus 2-Oxoglutarate- and iron-dependent dioxy	99.37
smart00702	178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	96.65
PRK05467	226	Fe(II)-dependent oxygenase superfamily protein; Pr	96.26
KOG2731	378	consensus DNA alkylation damage repair protein [RN	93.57
PLN00052	310	prolyl 4-hydroxylase; Provisional	90.3
PF03171	98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	83.05

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.6e-37  Score=293.24  Aligned_cols=196  Identities=42%  Similarity=0.754  Sum_probs=184.3

Q ss_pred             cCCCCCChhhhccee-eEeeeccccceeehhccCceeeccCceEEEcCcCCHHHHHHHHHHHHhhhhccccccccccccc
Q 021540          105 VQKPMLSREEREHMR-FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS  183 (311)
Q Consensus       105 ~~~~~~~~~~~~~~r-~~~v~~~k~F~~~e~v~g~~Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~  183 (311)
                      .....+++++|+..| +..++..|+|.+.|+++++.+|++.|+.+++..+++.|+..|.+.|.++..+++.+.+.+.+++
T Consensus        76 ~~~~~~~e~~~~~~~~~~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~  155 (323)
T KOG4176|consen   76 LFRELYSEESRLRYRTDANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFT  155 (323)
T ss_pred             hhhhhchhhhhhhhhhhccccccccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhcccccccce
Confidence            456677999999999 8999999999999999999999999999999999999999999999999998888888888887


Q ss_pred             CCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCC
Q 021540          184 APKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIP  263 (311)
Q Consensus       184 ~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~  263 (311)
                      .   |++|++|+++|||++|.|.++.++.      ..+++|||..++.+|+||+.|++||+  +||||+||+|+||+||+
T Consensus       156 ~---~~~gk~R~~iq~G~~f~y~~~~~d~------~~~~~piPs~~~~ii~rlv~~~~ip~--~pd~~~iN~Ye~G~~i~  224 (323)
T KOG4176|consen  156 Y---QESGKHREVIQLGYPFDYRTNNVDE------SKPVDPIPSLFKSIIDRLVSWRVIPE--RPDQCTINFYEPGDGIP  224 (323)
T ss_pred             e---eccccceeeeecCceeccCCCcccc------cCccCCCchHHHHHHHHhhhhccCCC--CCCeeEEEeeCCCCCCC
Confidence            6   9999999999999999999998873      33489999999999999999999998  89999999999999999


Q ss_pred             CCCCCCCCCCCeEEEecCCceeEEecccceecCCCCCCcceeeeCCCC
Q 021540          264 PHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG  311 (311)
Q Consensus       264 PHvD~~~F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~~~G~~~~~l~~g  311 (311)
                      ||+|.++|++||++|||+|+|+|.||+.+..++.|+|.|++++||+.|
T Consensus       225 ph~~~~~F~~Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g  272 (323)
T KOG4176|consen  225 PHIDHSAFLDPISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYG  272 (323)
T ss_pred             CCCChHHhcCceEEEEeecceeEEecccccccCccccccccccccccC
Confidence            999888899999999999999999999999999999999999999876

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A

Probab=99.89  E-value=3.1e-23  Score=181.78  Aligned_cols=153  Identities=25%  Similarity=0.456  Sum_probs=97.9

Q ss_pred             ceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCCCCC
Q 021540          145 GLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDP  224 (311)
Q Consensus       145 GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~v~P  224 (311)
                      ||+|++||||++|+++|++.+.+...........++.+..++++.++  ......|..|.|......      ...+++|
T Consensus         1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~y~y~~~~~~------~~~~~~~   72 (194)
T PF13532_consen    1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGG--LSWVGDGPSYRYSGKRPV------RSKPWPP   72 (194)
T ss_dssp             -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSE--EEEEECT--CCCTCC-EE------CCCEBSC
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceeccee--eEEECCCCCeEcCCcccc------CCCCCCC
Confidence            89999999999999999999996543221111222333322222211  111224566777654111      3567899


Q ss_pred             CcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCeEEEecCCceeEEecccceecCCCCCCc
Q 021540          225 LPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--FVRPFCTVSFLSECNIVFGSNLKVVGAGEFAG  302 (311)
Q Consensus       225 IP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~~~G  302 (311)
                      +|++|..+++++.....+++...||+||||+|.+|++|++|+|...  |+++|++||||++|+|.|++.      ++...
T Consensus        73 ~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~------~~~~~  146 (194)
T PF13532_consen   73 FPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNK------SDDDE  146 (194)
T ss_dssp             CHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEEC------GGTS-
T ss_pred             ccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeec------cCCCc
Confidence            9999999999998754434456899999999999999999999984  799999999999999999844      23447


Q ss_pred             ceeeeCCCC
Q 021540          303 SIPIALPVG  311 (311)
Q Consensus       303 ~~~~~l~~g  311 (311)
                      .+.|.||.|
T Consensus       147 ~~~~~L~~g  155 (194)
T PF13532_consen  147 PIEVPLPPG  155 (194)
T ss_dssp             EEEEEE-TT
T ss_pred             cEEEEcCCC
Confidence            799999876

...

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.88  E-value=1.7e-22  Score=179.62  Aligned_cols=133  Identities=18%  Similarity=0.233  Sum_probs=111.1

Q ss_pred             ccCceeeccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCC
Q 021540          135 IKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPP  214 (311)
Q Consensus       135 v~g~~Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p  214 (311)
                      +++..|...|-..|||+|||.+||+.++..|...+.               .||...++||.|+||.-..-         
T Consensus         3 ~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~---------------pkW~~L~NRRLqNyGGvvh~---------   58 (224)
T KOG3200|consen    3 IKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAPQ---------------PKWRVLANRRLQNYGGVVHK---------   58 (224)
T ss_pred             cceeEecccceEEEcCCccChHHHHHHHHHHhcCCC---------------chhHHHHhhhhhhcCCcccc---------
Confidence            445566677888999999999999999999987653               24555589999999974431         


Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCCCeEEEecCCceeEEeccccee
Q 021540          215 GILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKV  294 (311)
Q Consensus       215 ~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~F~~pIvsLSLGS~cvM~Fg~~~~~  294 (311)
                         ++--.+.||+||+.+.+++-..|+|+.  ..|+++||+|.||+||+||.|.+.|.+.|.+|||||+|+|.|......
T Consensus        59 ---~glipeelP~wLq~~v~kinnlglF~s--~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~  133 (224)
T KOG3200|consen   59 ---TGLIPEELPPWLQYYVDKINNLGLFKS--PANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQ  133 (224)
T ss_pred             ---CCcCccccCHHHHHHHHHhhcccccCC--CcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEeccccccc
Confidence               122238899999999999999999974  669999999999999999999999999999999999999999986555


Q ss_pred             cC
Q 021540          295 VG  296 (311)
Q Consensus       295 ~~  296 (311)
                      +.
T Consensus       134 e~  135 (224)
T KOG3200|consen  134 EV  135 (224)
T ss_pred             cc
Confidence            44

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional

Probab=99.85  E-value=1.9e-20  Score=171.31  Aligned_cols=149  Identities=21%  Similarity=0.313  Sum_probs=110.6

Q ss_pred             eccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCC-CcccCCCCceEEecC--------CcccccCCCCC
Q 021540          141 NILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAP-KKWMRGKGRITIQFG--------CCYNYATDKNG  211 (311)
Q Consensus       141 nvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p-~kw~~g~~Rrv~hfG--------~~y~Y~~~~~~  211 (311)
                      .+.+|..++++| +.+++++|++.++++....++-+     +..| ++.|+   -++.++|        ..|+|+.....
T Consensus        15 ~~~~g~~~~~~~-~~~~~~~l~~~~~~~~~~~p~~~-----~~~~gg~~ms---v~mt~~G~~~W~~d~~~YrYs~~~~~   85 (213)
T PRK15401         15 PLAPGAVLLRGF-ALAAAEALLAAIEAVAAQAPFRH-----MVTPGGYTMS---VAMTNCGALGWVTDRRGYRYSPIDPL   85 (213)
T ss_pred             ecCCCcEEeCCC-CHHHHHHHHHHHHHHHhcCCccc-----eecCCCCcce---eEEeccccceEecCCCCcccCCcCCC
Confidence            478999999999 49999999999999766543222     2222 22332   2555554        36888865322


Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCC--CCCCCeEEEecCCceeEEec
Q 021540          212 NPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNH--DFVRPFCTVSFLSECNIVFG  289 (311)
Q Consensus       212 ~~p~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~--~F~~pIvsLSLGS~cvM~Fg  289 (311)
                            ...+|++||++|..|++++.....++ .+.||+||||+|.+|++|++|+|..  .|+.||+|||||.+|+|.|+
T Consensus        86 ------~~~pwp~~P~~l~~L~~~~~~~~~~~-~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~  158 (213)
T PRK15401         86 ------TGKPWPAMPASFLALAQRAAAAAGFP-GFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFG  158 (213)
T ss_pred             ------CCCCCCCchHHHHHHHHHHHHHcCCC-CCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEec
Confidence                  46889999999999999986543332 3689999999999999999999974  39999999999999999999


Q ss_pred             ccceecCCCCCCcceeeeCCCC
Q 021540          290 SNLKVVGAGEFAGSIPIALPVG  311 (311)
Q Consensus       290 ~~~~~~~~g~~~G~~~~~l~~g  311 (311)
                      +....+      -..+|.|..|
T Consensus       159 ~~~~~~------~~~~l~L~~G  174 (213)
T PRK15401        159 GLKRSD------PLQRILLEHG  174 (213)
T ss_pred             ccCCCC------ceEEEEeCCC
Confidence            752211      2356777655

>TIGR00568 alkb DNA alkylation damage repair protein AlkB

Probab=99.81  E-value=3.1e-19  Score=158.06  Aligned_cols=144  Identities=18%  Similarity=0.268  Sum_probs=104.2

Q ss_pred             cCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCce------EEecCCcccccCCCCCCCCCCCCCCCCC
Q 021540          150 EGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRI------TIQFGCCYNYATDKNGNPPGILQNEPVD  223 (311)
Q Consensus       150 ~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rr------v~hfG~~y~Y~~~~~~~~p~~~~~~~v~  223 (311)
                      .+|+...+|..|++.+.+.....+|.+.    +....|.+... |.      -.--|+.|+|+.....      ...+++
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~~----~~~~gk~~~~p-r~~~~~l~W~~~g~~Y~ys~~~~~------~~~~~p   70 (169)
T TIGR00568         2 KRYFAFNAQEQLIRDINDVASQDPFRQY----VTPGGYTMSVA-MTNLGKLGWTTHGQGYLYSPKDPQ------TNKPWP   70 (169)
T ss_pred             CCccChHHHHHHHHHHHHHhhcCCCcCe----EecCCeEeeeh-hhhcccceEEcCCCcccCCCcccC------CCCCCC
Confidence            5789999999999999998776544432    22223333211 21      1222889999877653      356788


Q ss_pred             CCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCeEEEecCCceeEEecccceecCCCCCC
Q 021540          224 PLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--FVRPFCTVSFLSECNIVFGSNLKVVGAGEFA  301 (311)
Q Consensus       224 PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~~~  301 (311)
                      +||++|..|.+++...-.++ ...||+||||+|.+|++|++|+|.+.  ++.||+|||||++|+|.|++.....      
T Consensus        71 ~~P~~L~~L~~~v~~~~g~~-~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~------  143 (169)
T TIGR00568        71 AMPQDLGDLCERVATAAGFP-DFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRND------  143 (169)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-CCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCcCCC------
Confidence            99999999999986533222 35899999999999999999999754  7799999999999999998753211      


Q ss_pred             cceeeeCCCC
Q 021540          302 GSIPIALPVG  311 (311)
Q Consensus       302 G~~~~~l~~g  311 (311)
                      =+.+|.|..|
T Consensus       144 ~~~~l~L~sG  153 (169)
T TIGR00568       144 PPKRLRLHSG  153 (169)
T ss_pred             ceEEEEeCCC
Confidence            1366666654

Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]

Probab=99.70  E-value=1.3e-16  Score=144.26  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=95.0

Q ss_pred             eccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCc-----ccccCCCCCCCCC
Q 021540          141 NILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCC-----YNYATDKNGNPPG  215 (311)
Q Consensus       141 nvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~-----y~Y~~~~~~~~p~  215 (311)
                      ...+|+.++++|+ -.++.++++.|..+....++   ....+....++|+...    ++||.     |.|......    
T Consensus        12 ~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~---~~~~~~~~g~~~sV~r----~~~W~~d~~gy~y~~~~p~----   79 (194)
T COG3145          12 QLAPGAVILPGFL-LLTQGALVAALLFLLSQAPW---FRPRRTPYGKPMSVPR----LLGWVTDRRGYRYSLRSPL----   79 (194)
T ss_pred             cCCCCeEEEeccc-ccchHHHHHHHHHhcccCcc---cceeecCCCcEeeeee----ccceecccccccccccccC----
Confidence            4688999999999 77778888877776543321   1123334455554321    56654     444444332    


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCeEEEecCCceeEEecccce
Q 021540          216 ILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--FVRPFCTVSFLSECNIVFGSNLK  293 (311)
Q Consensus       216 ~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F~~pIvsLSLGS~cvM~Fg~~~~  293 (311)
                        +..++++||..+..++.   +.+..  ...||+||||+|.||++|++|+|...  ...||+|||||++|+|.|++...
T Consensus        80 --~~~p~p~l~~~~~~~~~---~~g~~--~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r  152 (194)
T COG3145          80 --TGKPWPPLLALFHDLFG---AAGYP--FEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR  152 (194)
T ss_pred             --CCCCCCccHHHHHHHHH---HhcCC--CCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC
Confidence              45667888888887775   33332  35889999999999999999999975  44579999999999999998743

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]

Probab=99.37  E-value=1.8e-13  Score=127.00  Aligned_cols=123  Identities=21%  Similarity=0.372  Sum_probs=106.4

Q ss_pred             ccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCC
Q 021540          142 ILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEP  221 (311)
Q Consensus       142 vi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~  221 (311)
                      .+|||.++++|+|.+|+.+|+..|+.++|+-                 +.++||+|.||...+|.+.+.       +...
T Consensus        70 p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~-----------------SQSGRRKQdyGPKvNFkk~Kl-------kt~~  125 (306)
T KOG3959|consen   70 PIPGLTLIENFLSESEEAKLLNMIDTVPWAQ-----------------SQSGRRKQDYGPKVNFKKKKL-------KTDT  125 (306)
T ss_pred             ccCCeeehhhhhccchHhHHHHHhccCchhh-----------------hcccccccccCCccchhhhhh-------ccCc
Confidence            4799999999999999999999999999842                 226899999999999998876       3556


Q ss_pred             CCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCC--CCCCCCCCCCCC-CCCCeEEEecCCceeEEec
Q 021540          222 VDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEE--GDCIPPHIDNHD-FVRPFCTVSFLSECNIVFG  289 (311)
Q Consensus       222 v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~P--G~GI~PHvD~~~-F~~pIvsLSLGS~cvM~Fg  289 (311)
                      ...||.+..-|.+||....++.....++||-+. |.|  |..|-||+|..| |+..++++.++++.++..-
T Consensus       126 F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnLe-Yep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc  195 (306)
T KOG3959|consen  126 FVGMPEYADMVLRRMSEYPVLKGFQPFEQCNLE-YEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLC  195 (306)
T ss_pred             ccCCchHHHHHHHHhhccchhhccCcHHHcCcc-cccccCCccCccccchhhhhhheeehhhccHHHHHhh
Confidence            789999999999999887777555566999987 777  788999999999 9999999988888877766

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues

Probab=96.65  E-value=0.025  Score=49.22  Aligned_cols=102  Identities=20%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             CceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCCCC
Q 021540          144 AGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVD  223 (311)
Q Consensus       144 ~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~v~  223 (311)
                      |++.++++|||++|.+.|++.+....+..   ..    ..       +....  ....  .|.+...       ......
T Consensus         1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~---~~----~~-------~~~~~--~~~~--~~R~~~~-------~~l~~~   55 (178)
T smart00702        1 PGVVVFHDFLSPAECQKLLEEAEPLGWRG---EV----TR-------GDTNP--NHDS--KYRQSNG-------TWLELL   55 (178)
T ss_pred             CcEEEECCCCCHHHHHHHHHHhhhhcccc---ee----ec-------CCCCc--cccC--CCEeecc-------eecCCC
Confidence            67899999999999999999997654311   11    00       00000  0000  1111110       000011


Q ss_pred             CCcHHHHHHHHHHHhccCCC--CCCCCCeEEEeecCCCCCCCCCCCCCC
Q 021540          224 PLPHLFKVIIRRLVKWHVLP--PTCVPDSCIVNIYEEGDCIPPHIDNHD  270 (311)
Q Consensus       224 PIP~~L~~LidRLv~~~vip--~~~~PDqciIN~Y~PG~GI~PHvD~~~  270 (311)
                      .-.+....|.+|+...-.++  ....-+.+.|..|.+|+...+|.|...
T Consensus        56 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~  104 (178)
T smart00702       56 KGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFE  104 (178)
T ss_pred             CCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCC
Confidence            01344555555554322222  023458899999999999999999964

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional

Probab=96.26  E-value=0.044  Score=51.15  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=21.7

Q ss_pred             eEEEcCcCCHHHHHHHHHHHHhhhh
Q 021540          146 LELHEGIFSAAEQKRIVDFVHTLNE  170 (311)
Q Consensus       146 L~li~dFIT~~EE~~Ll~~I~el~~  170 (311)
                      +.+++++||++|.++|++.+....|
T Consensus         2 i~~I~~vLs~eec~~~~~~le~~~~   26 (226)
T PRK05467          2 LLHIPDVLSPEEVAQIRELLDAAEW   26 (226)
T ss_pred             eeeecccCCHHHHHHHHHHHHhcCC
Confidence            4679999999999999999987654

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]

Probab=93.57  E-value=0.09  Score=52.23  Aligned_cols=98  Identities=13%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             eEEecCCcccccCCCCCCCCCCCCCCCCCCCcHHHHHHHH-HHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--C
Q 021540          195 ITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIR-RLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--F  271 (311)
Q Consensus       195 rv~hfG~~y~Y~~~~~~~~p~~~~~~~v~PIP~~L~~Lid-RLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F  271 (311)
                      |-+-.|..|++.+...   + +.-......+|+++..+.+ +..+.--+.+...+.-+|+|+|.+++.++-|+|...  .
T Consensus       166 Rw~T~G~~~dw~s~~~---~-~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~  241 (378)
T KOG2731|consen  166 RWVTLGNQYDWSSKDI---F-IFLSKKHYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDL  241 (378)
T ss_pred             cccccccccCCccccc---c-ccccccCCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhccc
Confidence            3444577777776551   1 1123345667777655554 332222222334556699999999999999999964  7


Q ss_pred             CCCeEEEecCCceeEEecccceecC
Q 021540          272 VRPFCTVSFLSECNIVFGSNLKVVG  296 (311)
Q Consensus       272 ~~pIvsLSLGS~cvM~Fg~~~~~~~  296 (311)
                      ..|+++.|||-.|.+..|..-...+
T Consensus       242 ~~pf~s~s~g~~ai~lLg~m~l~e~  266 (378)
T KOG2731|consen  242 SKPFYSPSLGQGAILLLGMMCLGEN  266 (378)
T ss_pred             CCccccccccccceeeecccccCCC
Confidence            7889999999999999986544433

>PLN00052 prolyl 4-hydroxylase; Provisional

Probab=90.30  E-value=2.9  Score=40.87  Aligned_cols=100  Identities=20%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             eeccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCC--CcccCCCCceEEecCCcccccCCCCCCCCCCC
Q 021540          140 VNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAP--KKWMRGKGRITIQFGCCYNYATDKNGNPPGIL  217 (311)
Q Consensus       140 Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p--~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~  217 (311)
                      +..-|=+.+|+||||.+|.+.|++.......        ..++...  .+-.. ...|+ ..|.-+.             
T Consensus        50 lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~--------~S~v~~~~~g~~~~-s~~RT-S~~~~l~-------------  106 (310)
T PLN00052         50 VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQ--------RSMVADNKSGKSVM-SEVRT-SSGMFLD-------------  106 (310)
T ss_pred             ecCCCCEEEECCcCCHHHHHHHHHhcccccc--------cceeecCCCCcccc-CCCEE-ecceeec-------------
Confidence            4456899999999999999999988754211        0011100  00000 01111 1111000             


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCC
Q 021540          218 QNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDN  268 (311)
Q Consensus       218 ~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~  268 (311)
                       .    .--+.+..|.+|+..+..+|... -+.+-|=.|.+|+...||.|.
T Consensus       107 -~----~~dpvv~~I~~Ria~~t~lp~~~-~E~lQVlrY~~Gq~Y~~H~D~  151 (310)
T PLN00052        107 -K----RQDPVVSRIEERIAAWTFLPEEN-AENIQILRYEHGQKYEPHFDY  151 (310)
T ss_pred             -C----CCCHHHHHHHHHHHHHhCCCccc-CcceEEEecCCCCCCCCCCCc
Confidence             0    00236788888988776665322 256777779999999999996

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit

Probab=83.05  E-value=0.38  Score=37.65  Aligned_cols=41  Identities=24%  Similarity=0.387  Sum_probs=26.1

Q ss_pred             CCeEEEeecC---CCCCCCCCCCCCCCCCCeEEEecC-CceeEEeccc
Q 021540          248 PDSCIVNIYE---EGDCIPPHIDNHDFVRPFCTVSFL-SECNIVFGSN  291 (311)
Q Consensus       248 PDqciIN~Y~---PG~GI~PHvD~~~F~~pIvsLSLG-S~cvM~Fg~~  291 (311)
                      ++++.||.|.   .+.++++|.|..   ..+++|-+. ...-+.|...
T Consensus         1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~   45 (98)
T PF03171_consen    1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDD   45 (98)
T ss_dssp             --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEET
T ss_pred             CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheecccc
Confidence            4789999999   788999999995   345555554 5555555543

The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	8e-17
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	1e-13

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345

 Score = 78.7 bits (193), Expect = 8e-17
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 27/182 (14%)

Query: 131 CLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMR 190
            ++  + +   +  GL + E I S+ E+K +++ V    +   +                
Sbjct: 98  KVQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQN-----------SQKS 146

Query: 191 GKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDS 250
            K R    FG  ++Y    N +    L     D         + + ++   +     PD 
Sbjct: 147 LKHRRVKHFGYEFHYEN-NNVDKDKPLSGGLPDICESF----LEKWLRKGYIKHK--PDQ 199

Query: 251 CIVNIYEEGDCIPPHIDNH-DFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALP 309
             +N YE G  IP HID H  F     ++S  SE  + F     +        ++P+ LP
Sbjct: 200 MTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPDGI--------AVPVMLP 251

Query: 310 VG 311
             
Sbjct: 252 RR 253

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 23/154 (14%)

Query: 145 GLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAP--KKWMRGKGRITIQFGCC 202
           G  +    F+    ++++             ++ +    +P  +    G   +++    C
Sbjct: 8   GAVILRR-FAFNAAEQLIR------------DINDVASQSPFRQMVTPGGYTMSVAMTNC 54

Query: 203 --YNYATDKNG---NPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYE 257
               + T + G   +P     N+P   +P  F  + +R       P    PD+C++N Y 
Sbjct: 55  GHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPD-FQPDACLINRYA 113

Query: 258 EGDCIPPHIDNH--DFVRPFCTVSFLSECNIVFG 289
            G  +  H D    D   P  +VS        FG
Sbjct: 114 PGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFG 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.91
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	99.87
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.87
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	99.79
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	93.93
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	93.64
3dkq_A	243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	87.88
2hbt_A	247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	84.48

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.91  E-value=5.5e-25  Score=212.04  Aligned_cols=145  Identities=26%  Similarity=0.427  Sum_probs=99.6

Q ss_pred             eeccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCCCC
Q 021540          140 VNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQN  219 (311)
Q Consensus       140 Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~  219 (311)
                      ..+++||+|+++|||++||++|++.|+..+..   ..+        .+|...++|++++||+.|+|+.....      ..
T Consensus       107 ~~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~---~~~--------~~~~~l~~Rr~~~yG~~Y~Ys~~~~~------~~  169 (345)
T 3tht_A          107 QALPPGLMVVEEIISSEEEKMLLESVDWTEDT---DNQ--------NSQKSLKHRRVKHFGYEFHYENNNVD------KD  169 (345)
T ss_dssp             CSCCTTEEEETTCSCHHHHHHHHTTCC---------------------------CEEECCC-------------------
T ss_pred             ccCCCceEEEcCcCCHHHHHHHHHhcccCCcc---ccc--------cCcccccCceEEEECCcccccccccc------cC
Confidence            35789999999999999999998877643321   111        22444578999999999999977653      34


Q ss_pred             CCC-CCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC-CCCCeEEEecCCceeEEecccceecCC
Q 021540          220 EPV-DPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD-FVRPFCTVSFLSECNIVFGSNLKVVGA  297 (311)
Q Consensus       220 ~~v-~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~-F~~pIvsLSLGS~cvM~Fg~~~~~~~~  297 (311)
                      .++ .++|+||..|++|+.+.++++  ..||+||||+|.+|++|+||+|.+. |+++|++||||++|+|.|++..     
T Consensus       170 ~p~p~~~P~~L~~l~~r~~~~~~~~--~~~n~~lvN~Y~~G~~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~-----  242 (345)
T 3tht_A          170 KPLSGGLPDICESFLEKWLRKGYIK--HKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPD-----  242 (345)
T ss_dssp             -----CCCHHHHHHHHHHHHHTSCS--SCCSEEEEEEECTTCCEEEECCCTTTBCSCEEEEEESSCEEEEEECTT-----
T ss_pred             CCCCcCcCHHHHHHHHHHHhcccCC--CCCCEEEEEEecCCCCEeeccCCchhcCCeEEEEECCCceeEEEccCC-----
Confidence            555 579999999999998777664  5899999999999999999999975 9999999999999999999851     


Q ss_pred             CCCCcceeeeCCCC
Q 021540          298 GEFAGSIPIALPVG  311 (311)
Q Consensus       298 g~~~G~~~~~l~~g  311 (311)
                      |   ..+.|.|+.|
T Consensus       243 ~---~~~~l~L~~g  253 (345)
T 3tht_A          243 G---IAVPVMLPRR  253 (345)
T ss_dssp             S---CEEEEEECTT
T ss_pred             C---ceEEEEcCCC
Confidence            1   2578888876

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10

Probab=99.87  E-value=1.6e-22  Score=185.25  Aligned_cols=148  Identities=16%  Similarity=0.222  Sum_probs=108.3

Q ss_pred             cCceEEEcCcCCHHHHHHHHHHHHh-hhhcccccccccccccCCCcccCCCCceEEecC-CcccccCCCCCCCCCCCCCC
Q 021540          143 LAGLELHEGIFSAAEQKRIVDFVHT-LNEMGTKGELKEKTYSAPKKWMRGKGRITIQFG-CCYNYATDKNGNPPGILQNE  220 (311)
Q Consensus       143 i~GL~li~dFIT~~EE~~Ll~~I~e-l~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG-~~y~Y~~~~~~~~p~~~~~~  220 (311)
                      ++||.|+++||+++|+++|++.|.+ ++|......+       +.+++. ..|++.+|| +.|+|....         ..
T Consensus        39 i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~-------~g~~~~-~~R~~~~~g~~~Y~Ys~~~---------~~  101 (238)
T 2iuw_A           39 VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR-------EDITYQ-QPRLTAWYGELPYTYSRIT---------ME  101 (238)
T ss_dssp             CEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES-------SSCEEE-CSSEEEEEECCCTTSCHHH---------HC
T ss_pred             CCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceec-------CCcccc-cCCeeEEcCCCccccCCcc---------cC
Confidence            6789999999999999999999964 4443211111       122222 358888899 578887542         23


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCC-CCCCCCCCCC-CC--CCeEEEecCCceeEEecccceecC
Q 021540          221 PVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGD-CIPPHIDNHD-FV--RPFCTVSFLSECNIVFGSNLKVVG  296 (311)
Q Consensus       221 ~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~-GI~PHvD~~~-F~--~pIvsLSLGS~cvM~Fg~~~~~~~  296 (311)
                      +.+++|++|..|.+++.+.-    ...||+||||+|.+|+ +|++|+|... |+  .+|++||||++|+|.|++......
T Consensus       102 ~~p~wp~~l~~l~~~~~~~~----g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~~~~~  177 (238)
T 2iuw_A          102 PNPHWHPVLRTLKNRIEENT----GHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEE  177 (238)
T ss_dssp             CBSSCCHHHHHHHHHHHHHH----SCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC---
T ss_pred             CCCCCCHHHHHHHHHHHHHh----CCCCCEEEEEEECCCCCceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccCCccc
Confidence            34688999999988875532    2478999999999996 9999999975 77  899999999999999998754332


Q ss_pred             CCC--CCcceeeeCCCC
Q 021540          297 AGE--FAGSIPIALPVG  311 (311)
Q Consensus       297 ~g~--~~G~~~~~l~~g  311 (311)
                      .|+  ....+.|.|+.|
T Consensus       178 ~~~~~~~~~~~i~L~~g  194 (238)
T 2iuw_A          178 NGDYTYVERVKIPLDHG  194 (238)
T ss_dssp             -----CCCEEEEEECTT
T ss_pred             cCcccCCceEEEEcCCC
Confidence            232  246789999876

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...

Probab=99.87  E-value=1.3e-21  Score=177.06  Aligned_cols=149  Identities=19%  Similarity=0.302  Sum_probs=111.8

Q ss_pred             eccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCC-CcccCCCCceEEecC--------CcccccCCCCC
Q 021540          141 NILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAP-KKWMRGKGRITIQFG--------CCYNYATDKNG  211 (311)
Q Consensus       141 nvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p-~kw~~g~~Rrv~hfG--------~~y~Y~~~~~~  211 (311)
                      .+.||+.++++|+. ++|++|++.|+++.+..+   +  +....| .+.|+   -++++.|        ..|.|+.....
T Consensus         4 ~~~~g~~~~~~~~~-~~~~~l~~~~~~~~~~~p---~--~~~~~pgg~~~s---~~~~~~g~~~W~~d~~~Y~Ys~~~~~   74 (211)
T 3i3q_A            4 PLAAGAVILRRFAF-NAAEQLIRDINDVASQSP---F--RQMVTPGGYTMS---VAMTNCGHLGWTTHRQGYLYSPIDPQ   74 (211)
T ss_dssp             CCBTTBEEETTTTT-TTHHHHHHHHHHHHHHSC---C--BCCBCTTSCBCS---SEEEEESSBEEEEETTEEEEESBCTT
T ss_pred             ecCCCCEEECCcCh-HHHHHHHHHHHHHHhcCC---C--ceeEcCCCCcCc---hhhcccccceeecCCCCcCcCCCccC
Confidence            36789999999998 688999999999877432   2  122222 22222   2555443        25888866532


Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCC--CCCCCeEEEecCCceeEEec
Q 021540          212 NPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNH--DFVRPFCTVSFLSECNIVFG  289 (311)
Q Consensus       212 ~~p~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~--~F~~pIvsLSLGS~cvM~Fg  289 (311)
                            ...+|++||++|..|++++.....++ .+.||+||||+|.+|++|++|+|.+  .|+.||+|||||++|+|.|+
T Consensus        75 ------~~~pw~~~P~~L~~l~~~~~~~~g~~-~~~pn~~LvN~Y~~G~~i~~H~D~~e~~~~~pI~svSLG~~~~f~f~  147 (211)
T 3i3q_A           75 ------TNKPWPAMPQSFHNLCQRAATAAGYP-DFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFG  147 (211)
T ss_dssp             ------TSSBCCCCCHHHHHHHHHHHHHTTCT-TCCCCEEEEEEECTTCCEEEECCCCCSCTTSCEEEEEEESCEEEEEC
T ss_pred             ------CCCCCCchHHHHHHHHHHHHHhcCCC-CcCCCEEEEEEEcCCCCcccccCCCccccCCCEEEEECCCCeEEEEe
Confidence                  46789999999999999987654332 4688999999999999999999963  49999999999999999999


Q ss_pred             ccceecCCCCCCcceeeeCCCC
Q 021540          290 SNLKVVGAGEFAGSIPIALPVG  311 (311)
Q Consensus       290 ~~~~~~~~g~~~G~~~~~l~~g  311 (311)
                      +....      .+.+.|.|+.|
T Consensus       148 ~~~~~------~~~~~i~L~~G  163 (211)
T 3i3q_A          148 GLKRN------DPLKRLLLEHG  163 (211)
T ss_dssp             CSSTT------SCCEEEEECTT
T ss_pred             cccCC------CceEEEECCCC
Confidence            76321      25678888776

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*

Probab=99.79  E-value=2.9e-19  Score=160.29  Aligned_cols=150  Identities=18%  Similarity=0.226  Sum_probs=106.8

Q ss_pred             cCc-eEEEcCcCCHHHHHHHHHHHHh-hhhcccccccccccccCCCcccCCCCceEEecC---CcccccCCCCCCCCCCC
Q 021540          143 LAG-LELHEGIFSAAEQKRIVDFVHT-LNEMGTKGELKEKTYSAPKKWMRGKGRITIQFG---CCYNYATDKNGNPPGIL  217 (311)
Q Consensus       143 i~G-L~li~dFIT~~EE~~Ll~~I~e-l~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG---~~y~Y~~~~~~~~p~~~  217 (311)
                      -+| -+++++||+.+|+.+|++.+.+ .+|..  ++  ...+....|++. ..|.+..||   ..|.|+....       
T Consensus         8 ~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~--~~--~~~~~~~gk~~~-~pR~~~wyg~~~~~Y~Ysg~~~-------   75 (204)
T 3s57_A            8 AEGLDSSYTVLFGKAEADEIFQELEKEVEYFT--GA--LARVQVFGKWHS-VPRKQATYGDAGLTYTFSGLTL-------   75 (204)
T ss_dssp             ETTEEEEEEECSCHHHHHHHHHHHHHHCCCCC--GG--GGEEEETTEEEE-CSSEEEEEECTTCCEEETTEEE-------
T ss_pred             eCCceEEecCcCCHHHHHHHHHHHHHhCCCCC--cc--cceEEECCeEec-cCcEEEEECCCCCCcccCCCcc-------
Confidence            567 4689999999999999999865 33310  00  011112233333 347778888   5688875432       


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCC-CCCCCCCCCC---CCCCeEEEecCCceeEEecccce
Q 021540          218 QNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGD-CIPPHIDNHD---FVRPFCTVSFLSECNIVFGSNLK  293 (311)
Q Consensus       218 ~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~-GI~PHvD~~~---F~~pIvsLSLGS~cvM~Fg~~~~  293 (311)
                         ...|+|++|..|.+++.+.-    ...||+||||+|.+|+ +|++|.|...   ++.+|++||||++|+|.|++...
T Consensus        76 ---~~~pwp~~L~~l~~~~~~~~----g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~  148 (204)
T 3s57_A           76 ---SPKPWIPVLERIRDHVSGVT----GQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDS  148 (204)
T ss_dssp             ---CCEECCHHHHHHHHHHHHHH----CCCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGG
T ss_pred             ---cCCCCCHHHHHHHHHHHHHh----CCCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCCceEEEEEEcCC
Confidence               23577999999998885431    2478999999999998 9999999964   78999999999999999998643


Q ss_pred             ec-CCCCCCcceeeeCCCC
Q 021540          294 VV-GAGEFAGSIPIALPVG  311 (311)
Q Consensus       294 ~~-~~g~~~G~~~~~l~~g  311 (311)
                      .. ++.+..+.+.|.|+.|
T Consensus       149 ~~~~~~~~~~~~~~~L~~G  167 (204)
T 3s57_A          149 RGKSPSRRVAVVRLPLAHG  167 (204)
T ss_dssp             CSSSCSCCCCCEEEEECTT
T ss_pred             CccccccCCceEEEECCCC
Confidence            22 1223345688988876

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}

Probab=93.93  E-value=0.097  Score=46.91  Aligned_cols=94  Identities=13%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             ccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecC-CcccccCCCCCCCCCCCCCC
Q 021540          142 ILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFG-CCYNYATDKNGNPPGILQNE  220 (311)
Q Consensus       142 vi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG-~~y~Y~~~~~~~~p~~~~~~  220 (311)
                      .-|.+.+++||||++|.+.|++.....-..                       -.+..+ ..-.|.+.         ...
T Consensus        37 ~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~-----------------------s~v~~~~~~~~~RtS---------~~~   84 (216)
T 3itq_A           37 EEPLIVVLGNVLSDEECDELIELSKSKLAR-----------------------SKVGSSRDVNDIRTS---------SGA   84 (216)
T ss_dssp             TTTTEEEEESCSCHHHHHHHHHHHHHHHC-------------------------------CCCCGGGT---------TCE
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHhhccccc-----------------------ceeccCCccCCcEee---------eeE
Confidence            468999999999999999999988642110                       000000 00011111         111


Q ss_pred             CCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCC
Q 021540          221 PVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNH  269 (311)
Q Consensus       221 ~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~  269 (311)
                      -+.. .+.++.|.+|+...-.++. ..-+.+-|..|.+|+.-.+|.|..
T Consensus        85 wl~~-~~~v~~i~~Ri~~~~gl~~-~~~E~lqv~~Y~~G~~y~~H~D~~  131 (216)
T 3itq_A           85 FLDD-NELTAKIEKRISSIMNVPA-SHGEGLHILNYEVDQQYKAHYDYF  131 (216)
T ss_dssp             ECCC-CHHHHHHHHHHHHHHTSCG-GGBCCCEEEEECBTCCEEEECSSC
T ss_pred             EeCC-cHHHHHHHHHHHHhcCcee-ccccceeEEEeCCCCccccccCCC
Confidence            1233 5677778888765433431 122567888899999999999984

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A

Probab=93.64  E-value=0.24  Score=43.64  Aligned_cols=100  Identities=16%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             eeccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCC-CceEEecCCcccccCCCCCCCCCCCC
Q 021540          140 VNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGK-GRITIQFGCCYNYATDKNGNPPGILQ  218 (311)
Q Consensus       140 Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~-~Rrv~hfG~~y~Y~~~~~~~~p~~~~  218 (311)
                      +..-|-+.+++||||++|.+.|++.+...-...        ++.      .+. +..+..     .+.+..         
T Consensus        16 ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s--------~v~------~~~~g~~~~~-----~~R~s~---------   67 (224)
T 2jig_A           16 LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKS--------SVV------DNESGKSVDS-----EIRTST---------   67 (224)
T ss_dssp             EETTTTEEEETTCSCHHHHHHHHHHHGGGCEEC--------EEE------ETTTTEEEEC-----SSBCSE---------
T ss_pred             EeCCCCEEEEcccCCHHHHHHHHHHhhccCeee--------eee------cCCCCccccc-----CCEEEe---------
Confidence            446789999999999999999999886521100        000      000 000000     011100         


Q ss_pred             CCCCC-CCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCC
Q 021540          219 NEPVD-PLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDN  268 (311)
Q Consensus       219 ~~~v~-PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~  268 (311)
                      ..-++ .-.+.++.|.+|+.+.-.+|.. .-+.+.|..|.+|+.-.+|.|.
T Consensus        68 ~~~l~~~~~~~~~~i~~ri~~~~gl~~~-~~e~~qv~rY~~G~~y~~H~D~  117 (224)
T 2jig_A           68 GTWFAKGEDSVISKIEKRVAQVTMIPLE-NHEGLQVLHYHDGQKYEPHYDY  117 (224)
T ss_dssp             EEECCTTCSHHHHHHHHHHHHHHTCCGG-GBCCCEEEEEETTCCEEEECCS
T ss_pred             eeEecCCCCHHHHHHHHHHHHHhCCCcc-cccceEEEecCCCccccCcccC
Confidence            00011 1134677788887665445421 2356888899999999999997

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}

Probab=87.88  E-value=0.27  Score=44.85  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=23.4

Q ss_pred             cCceEEEcCcCCHHHHHHHHHHHHhhh
Q 021540          143 LAGLELHEGIFSAAEQKRIVDFVHTLN  169 (311)
Q Consensus       143 i~GL~li~dFIT~~EE~~Ll~~I~el~  169 (311)
                      -.++.+++||||++|.++|++.+....
T Consensus        18 ~~~i~~i~dvLs~~Ec~~li~~~e~~~   44 (243)
T 3dkq_A           18 QGMLIEIPNVFSKQEVSHLREQLDARR   44 (243)
T ss_dssp             BTTBEEECCSSCHHHHHHHHHHHHTSC
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHhhCC
Confidence            468899999999999999999997543

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*

Probab=84.48  E-value=5.2  Score=36.04  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             cCceEEEcCcCCHHHHHHHHHHHHhhhh
Q 021540          143 LAGLELHEGIFSAAEQKRIVDFVHTLNE  170 (311)
Q Consensus       143 i~GL~li~dFIT~~EE~~Ll~~I~el~~  170 (311)
                      ..|..+++|||+++|.++|++.+..+..
T Consensus        25 ~~g~~Vid~fLs~ee~~~L~~~~~~~~~   52 (247)
T 2hbt_A           25 KHGICVVDDFLGKETGQQIGDEVRALHD   52 (247)
T ss_dssp             HTSEEEESSSSCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCCCHHHHHHHHHHHHhhhh
Confidence            3699999999999999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	311
d2fdia1	200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	1e-10
d2iuwa1	210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	2e-06

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 153 FSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMR--GKGRITIQFGCC--YNYATD 208
           F+    ++++             ++ +    +P + M   G   +++    C    + T 
Sbjct: 11  FAFNAAEQLIR------------DINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTH 58

Query: 209 KNGNPPGILQ---NEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPH 265
           + G     +    N+P   +P  F  + +R       P    PD+C++N Y  G  +  H
Sbjct: 59  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDF-QPDACLINRYAPGAKLSLH 117

Query: 266 IDN--HDFVRPFCTVSFLSECNIVFG 289
            D    D   P  +VS        FG
Sbjct: 118 QDKDEPDLRAPIVSVSLGLPAIFQFG 143

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 16/170 (9%), Positives = 45/170 (26%), Gaps = 21/170 (12%)

Query: 143 LAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCC 202
           ++ + L+ G     E   I++ +            ++  +               +    
Sbjct: 18  VSRVCLYPGFVDVKEADWILEQL-----------CQDVPWKQRTGIREDITYQQPRLTAW 66

Query: 203 YNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCI 262
           Y     +       +  EP      + + +  R+ +        +          E D +
Sbjct: 67  Y----GELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSL---LCNLYRNEKDSV 119

Query: 263 PPHIDNHDFVR---PFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALP 309
             H D+   +       ++SF +               G++     + +P
Sbjct: 120 DWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIP 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d2fdia1	200	Alkylated DNA repair protein AlkB {Escherichia col	99.88
d2iuwa1	210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.78

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=6.6e-23  Score=181.60  Aligned_cols=149  Identities=19%  Similarity=0.278  Sum_probs=109.9

Q ss_pred             ccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEe---cCC-----cccccCCCCCCC
Q 021540          142 ILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQ---FGC-----CYNYATDKNGNP  213 (311)
Q Consensus       142 vi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~h---fG~-----~y~Y~~~~~~~~  213 (311)
                      +.||++++++|++ +||++||+.|+++....++-..    .+...+.|+.   ++.+   |||     .|.|......  
T Consensus         1 lapG~v~l~~f~~-~~~~~ll~~~~~~~~~~p~r~~----~~p~g~~msv---~~~~~g~~gW~~d~~~Yry~~~~~~--   70 (200)
T d2fdia1           1 LAAGAVILRRFAF-NAAEQLIRDINDVASQSPFRQM----VTPGGYTMSV---AMTNCGHLGWTTHRQGYLYSPIDPQ--   70 (200)
T ss_dssp             CCTTEEEETTTTT-TTHHHHHHHHHHHHHHSCCBCC----BCTTSCBCSS---EEEEESSBEEEEETTEEEEESBCTT--
T ss_pred             CCCCEEEECCcCC-HHHHHHHHHHHHHHhhCCceee----ecCCCCcceE---EEEeccccccccCCcCcccccccCC--
Confidence            4689999999986 4677899999987664332111    1112344432   3333   333     5788766543  


Q ss_pred             CCCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCC--CCCCCCeEEEecCCceeEEeccc
Q 021540          214 PGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDN--HDFVRPFCTVSFLSECNIVFGSN  291 (311)
Q Consensus       214 p~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~--~~F~~pIvsLSLGS~cvM~Fg~~  291 (311)
                          ...+|++||++|..|+++++....++ ...||+||||+|.+|++|++|.|.  +.|+.||+|||||++|+|.|+..
T Consensus        71 ----~~~~wp~iP~~l~~L~~~~~~~~~~~-~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~~pIvslSLG~~~~f~f~~~  145 (200)
T d2fdia1          71 ----TNKPWPAMPQSFHNLCQRAATAAGYP-DFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGL  145 (200)
T ss_dssp             ----TSSBCCCCCHHHHHHHHHHHHHHTCT-TCCCSEEEEEEECTTCCEEEECCCCSSCTTSCEEEEEEESCEEEEECCS
T ss_pred             ----CCCCCCCccHHHHHHHHHHHHHcCCC-ccCCCeeEEEEecCCCCccccccCCccccCCCceEEEEeCCeeEEeccc
Confidence                46789999999999999998766554 357999999999999999999886  45999999999999999999875


Q ss_pred             ceecCCCCCCcceeeeCCCC
Q 021540          292 LKVVGAGEFAGSIPIALPVG  311 (311)
Q Consensus       292 ~~~~~~g~~~G~~~~~l~~g  311 (311)
                      ..      .....+|.|+.|
T Consensus       146 ~~------~~~~~~~~L~~G  159 (200)
T d2fdia1         146 KR------NDPLKRLLLEHG  159 (200)
T ss_dssp             ST------TSCCEEEEECTT
T ss_pred             cc------CCceEEEEcCCC
Confidence            22      224577777765

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-19  Score=157.07  Aligned_cols=149  Identities=17%  Similarity=0.199  Sum_probs=97.5

Q ss_pred             ccCceEEEcCcCCHHHHHHHHHHHHhh-hhcccccccccccccCCCcccCCCCceEEecC-CcccccCCCCCCCCCCCCC
Q 021540          142 ILAGLELHEGIFSAAEQKRIVDFVHTL-NEMGTKGELKEKTYSAPKKWMRGKGRITIQFG-CCYNYATDKNGNPPGILQN  219 (311)
Q Consensus       142 vi~GL~li~dFIT~~EE~~Ll~~I~el-~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG-~~y~Y~~~~~~~~p~~~~~  219 (311)
                      .++||.|++||||++|++.|++.|.+. .|..    .   .+....++.. ..|.+..|| ..|.|....         .
T Consensus        17 g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~----~---~~~~~g~~~~-~pR~~~~~~d~~y~y~~~~---------~   79 (210)
T d2iuwa1          17 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQ----R---TGIREDITYQ-QPRLTAWYGELPYTYSRIT---------M   79 (210)
T ss_dssp             SCEEEEEETTSSCHHHHHHHHHHHHHHSCCBC----C---EEESSSCEEE-CSSEEEEEECCCTTSCHHH---------H
T ss_pred             CcceEEEECCcCCHHHHHHHHHHHHhhCCccc----c---ceeccCcccc-eeeeeEEecCcCccccccc---------c
Confidence            466899999999999999999999764 3321    1   1111111111 234443333 344444321         2


Q ss_pred             CCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeec-CCCCCCCCCCCCCC-C--CCCeEEEecCCceeEEecccceec
Q 021540          220 EPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIY-EEGDCIPPHIDNHD-F--VRPFCTVSFLSECNIVFGSNLKVV  295 (311)
Q Consensus       220 ~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y-~PG~GI~PHvD~~~-F--~~pIvsLSLGS~cvM~Fg~~~~~~  295 (311)
                      .+..++|++|..|.+++.+....    .+++|+||.| .+|++|++|.|... |  +.+|++||||++|+|+|++.....
T Consensus        80 ~~~~~~~~~l~~l~~~~~~~~~~----~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~  155 (210)
T d2iuwa1          80 EPNPHWHPVLRTLKNRIEENTGH----TFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPE  155 (210)
T ss_dssp             CCBSSCCHHHHHHHHHHHHHHSC----CCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC--
T ss_pred             ccCCCCcHHHHHHHHhhhhhcCc----cchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccc
Confidence            33577899999999998765432    5677777777 55689999999975 5  567999999999999998765444


Q ss_pred             CCCCCC--cceeeeCCCC
Q 021540          296 GAGEFA--GSIPIALPVG  311 (311)
Q Consensus       296 ~~g~~~--G~~~~~l~~g  311 (311)
                      ..+...  -.++|+|+.|
T Consensus       156 ~~~~~~~~~~~~i~L~~g  173 (210)
T d2iuwa1         156 ENGDYTYVERVKIPLDHG  173 (210)
T ss_dssp             ------CCCEEEEEECTT
T ss_pred             cCCccCCCceEEEEcCCC
Confidence            333333  3588999876