Citrus Sinensis ID: 021611

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSSV
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHEHHcHHHHccccccHHHHHHHHHHHHHEEEEEEEccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mtgtfgalsLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQhvlkptinpplysfhrslltskaplsvqthinslfstprghylqnraptftrrlfipsvsgiwdaltggnnnsREAVVAIRRGMLLFRQgdvvgsvaefdkaieldprQKAYLWQRGLSLYYLDRFEEGAEQFRIDvaqnpndteESIWCFLCEAQLYGVDEARNRflevgrdprpvMREAYnmfkgggdpEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAcespygqrsDDYMAALAKVHSLCRNWSSV
Flexible Loop (DISEMBL)
mtgtfgalslsqTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINslfstprghYLQNRAPTFTRRLFIPSVSGIWDaltggnnnsREAVVAIRRGMLLFRQGDVVGSVAEFdkaieldprqkayLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRflevgrdprpvMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSlcrnwssv
Low Complexity Region (SEG)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSSV
Disordered region (IsUnstruct)
******************TQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN****
Disordered Region (DISOPRED)
***TFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRS*LT****LSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS**
Disordered Region (DISEMBL)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSSV
Disordered Region (DISPRO)
****F*ALSLS*TYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q1CM50	294	Lipoprotein NlpI OS=Yersi	yes	no	0.241	0.255	0.306	0.0007
Q7CKI5	294	Lipoprotein NlpI OS=Yersi	yes	no	0.241	0.255	0.306	0.0007
Q1C3L9	294	Lipoprotein NlpI OS=Yersi	yes	no	0.241	0.255	0.306	0.0007

>sp|Q1CM50|NLPI_YERPN Lipoprotein NlpI OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nlpI PE=3 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
           G+ L + G+   +   FD  +ELDP        RG++LYY  RF    +  +     +PN
Sbjct: 103 GIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPN 162

Query: 191 DTEESIWCFLCEAQL 205
           D   S+W +L E ++
Sbjct: 163 DPFRSLWLYLVEREI 177

May be involved in cell division. May play a role in bacterial septation or regulation of cell wall degradation during cell division.
Yersinia pestis bv. Antiqua (strain Nepal516) (taxid: 377628)

>sp|Q7CKI5|NLPI_YERPE Lipoprotein NlpI OS=Yersinia pestis GN=nlpI PE=3 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
           G+ L + G+   +   FD  +ELDP        RG++LYY  RF    +  +     +PN
Sbjct: 103 GIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPN 162

Query: 191 DTEESIWCFLCEAQL 205
           D   S+W +L E ++
Sbjct: 163 DPFRSLWLYLVEREI 177

May be involved in cell division. May play a role in bacterial septation or regulation of cell wall degradation during cell division.

Yersinia pestis (taxid: 632)

>sp|Q1C3L9|NLPI_YERPA Lipoprotein NlpI OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nlpI PE=3 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
           G+ L + G+   +   FD  +ELDP        RG++LYY  RF    +  +     +PN
Sbjct: 103 GIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPN 162

Query: 191 DTEESIWCFLCEAQL 205
           D   S+W +L E ++
Sbjct: 163 DPFRSLWLYLVEREI 177

May be involved in cell division. May play a role in bacterial septation or regulation of cell wall degradation during cell division.

Yersinia pestis bv. Antiqua (strain Antiqua) (taxid: 360102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
224125100	271	predicted protein [Populus trichocarpa]	0.858	0.981	0.770	1e-115
449454057	267	PREDICTED: uncharacterized protein LOC10	0.8	0.928	0.777	1e-108
357441797	265	hypothetical protein MTR_1g083600 [Medic	0.683	0.8	0.822	1e-104
225450751	270	PREDICTED: uncharacterized protein LOC10	0.741	0.851	0.773	1e-103
217073934	265	unknown [Medicago truncatula]	0.683	0.8	0.813	1e-102
124359146	263	TPR repeat [Medicago truncatula]	0.677	0.798	0.803	1e-100
255542812	221	conserved hypothetical protein [Ricinus	0.7	0.981	0.777	1e-99
388511867	257	unknown [Lotus japonicus]	0.703	0.848	0.797	1e-99
30679555	257	tetratricopeptide repeat-containing prot	0.816	0.984	0.681	1e-98
297829092	257	binding protein [Arabidopsis lyrata subs	0.816	0.984	0.677	1e-96

>gi|224125100|ref|XP_002319500.1| predicted protein [Populus trichocarpa] gi|222857876|gb|EEE95423.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/270 (77%), Positives = 228/270 (84%), Gaps = 4/270 (1%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINS-LFST---PRGHYLQNRAPTFT 99
           MALT +       P   S H+  LT+  P S +TH NS  FST    R H LQN  PTFT
Sbjct: 1   MALTHNFNHIFPTPSSSSKHKHSLTTTLPFSPKTHTNSHFFSTNIPSRIHNLQNPLPTFT 60

Query: 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA 159
           RRLF+PSVSGIWDALTGGNNN REAV+AIRRGMLLFRQGDV+GS+ EFDKAIELD RQKA
Sbjct: 61  RRLFLPSVSGIWDALTGGNNNPREAVMAIRRGMLLFRQGDVLGSLVEFDKAIELDTRQKA 120

Query: 160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG 219
           YLWQRGLSLYY+DRFEEGA+QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR RFLEVG
Sbjct: 121 YLWQRGLSLYYVDRFEEGAQQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARKRFLEVG 180

Query: 220 RDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHIL 279
           RDPRPVMREAYNMFK GGDPEK   AFS+G+ NEYFYASLYAGL++E+QK+ +AAK+ I+
Sbjct: 181 RDPRPVMREAYNMFKDGGDPEKFATAFSNGQGNEYFYASLYAGLYHEAQKEPEAAKVQII 240

Query: 280 AACESPYGQRSDDYMAALAKVHSLCRNWSS 309
           AAC SPYGQRSDDYMA+LAKVH LCRNWSS
Sbjct: 241 AACRSPYGQRSDDYMASLAKVHCLCRNWSS 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454057|ref|XP_004144772.1| PREDICTED: uncharacterized protein LOC101209381 [Cucumis sativus]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/252 (77%), Positives = 214/252 (84%), Gaps = 4/252 (1%)

Query: 60  YSFHRSLLTSKAPLSVQT--HINSLFSTPRGHYLQNRAP-TFTRRLFIPSVSGIWDALTG 116
           +S H+S        S +T    +S  S P    L +  P + +RRLF+PSVSGIWDALTG
Sbjct: 15  HSLHKSFTAPSFTNSTKTIEVFHSPSSLPMRITLNHVPPLSLSRRLFVPSVSGIWDALTG 74

Query: 117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE 176
           GNN  R+AV AIRRGMLLFRQGDV+GS+AEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE
Sbjct: 75  GNN-PRDAVAAIRRGMLLFRQGDVLGSLAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE 133

Query: 177 GAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGG 236
           GAEQFR+DVAQNPNDTEESIWCFLCEAQLYGVDEAR RFLEVGRDPRPVMREAYNMFK G
Sbjct: 134 GAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARRRFLEVGRDPRPVMREAYNMFKDG 193

Query: 237 GDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAA 296
           G PEKLVAAFSSGRENEYFYASLYAGL++E++KK DAAK  I+AAC+S Y QRSDDYMAA
Sbjct: 194 GHPEKLVAAFSSGRENEYFYASLYAGLYHEAEKKVDAAKQDIVAACQSTYAQRSDDYMAA 253

Query: 297 LAKVHSLCRNWS 308
           LAKVH LCRNWS
Sbjct: 254 LAKVHCLCRNWS 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441797|ref|XP_003591176.1| hypothetical protein MTR_1g083600 [Medicago truncatula] gi|355480224|gb|AES61427.1| hypothetical protein MTR_1g083600 [Medicago truncatula] gi|388510044|gb|AFK43088.1| unknown [Medicago truncatula]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/214 (82%), Positives = 199/214 (92%), Gaps = 2/214 (0%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++AIRRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 214
           PRQKAYLWQRGLSLYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEAQLYGVDEAR R
Sbjct: 110 PRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKR 169

Query: 215 FLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAA 274
           +LEVGRDPRPVMRE YNMFK GGDPEKLV AFS+ RE++YFYASLYAGL+YESQ ++DAA
Sbjct: 170 YLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESDAA 229

Query: 275 KLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308
           K+HI+AAC+S YGQRSDDYMA+L+KVH LCRNW+
Sbjct: 230 KVHIVAACKSLYGQRSDDYMASLSKVHCLCRNWN 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450751|ref|XP_002279298.1| PREDICTED: uncharacterized protein LOC100240883 [Vitis vinifera] gi|296089711|emb|CBI39530.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/238 (77%), Positives = 202/238 (84%), Gaps = 8/238 (3%)

Query: 79  INSLFSTP-------RGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRG 131
           I  L S+P       R H  Q    + +RRLF+PSVSGIW+ALTGG++  RE+ +AIRRG
Sbjct: 33  IKPLSSSPFFTTTASRIHSHQTPFHSLSRRLFLPSVSGIWNALTGGDSY-RESAMAIRRG 91

Query: 132 MLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191
           MLLFRQGDV GS+ EFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR+DVAQNPND
Sbjct: 92  MLLFRQGDVSGSLVEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPND 151

Query: 192 TEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRE 251
           TEESIWCFLCEAQLYG DEAR RFLEVGRDPRPVMREAYNMFK GGDPEKLVA FS  + 
Sbjct: 152 TEESIWCFLCEAQLYGADEARRRFLEVGRDPRPVMREAYNMFKDGGDPEKLVAQFSGNQA 211

Query: 252 NEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSS 309
            EYFYASLYAGL+YESQ    +AKLH+LAAC+SPYGQRSDDYMA+LAKVH LCR+WSS
Sbjct: 212 GEYFYASLYAGLYYESQNDPGSAKLHLLAACQSPYGQRSDDYMASLAKVHCLCRSWSS 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073934|gb|ACJ85327.1| unknown [Medicago truncatula]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/214 (81%), Positives = 197/214 (92%), Gaps = 2/214 (0%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++A RRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLATRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 214
           PRQKAYLWQRGLSLYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEAQLYGVD AR R
Sbjct: 110 PRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDGARKR 169

Query: 215 FLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAA 274
           +LEVGRDPRPVMRE YNMFK GGDPEKLV AFS+ RE++YFYASLYAGL+YESQ ++DAA
Sbjct: 170 YLEVGRDPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESDAA 229

Query: 275 KLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308
           K+HI+AAC+S YGQRSDDYMA+L+KVH LCRNW+
Sbjct: 230 KVHIVAACKSLYGQRSDDYMASLSKVHCLCRNWN 263

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359146|gb|ABD28339.2| TPR repeat [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/214 (80%), Positives = 196/214 (91%), Gaps = 4/214 (1%)

Query: 97  TFTRRLFIPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154
             +RRLF+PSVSGIWDA+TGG  NNN+ EA++AIRRGM LFRQG+V+GSV EFDKAI+LD
Sbjct: 50  NLSRRLFLPSVSGIWDAITGGSGNNNTNEALLAIRRGMSLFRQGEVLGSVVEFDKAIQLD 109

Query: 155 PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 214
           PRQKAYLWQRGLSLYYLDRFEEGAEQFR+DVAQNPNDTEESIWCFLCEAQLYGVDEAR R
Sbjct: 110 PRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEAQLYGVDEARKR 169

Query: 215 FLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAA 274
           +LE   +PRPVMRE YNMFK GGDPEKLV AFS+ RE++YFYASLYAGL+YESQ ++DAA
Sbjct: 170 YLEA--NPRPVMRETYNMFKDGGDPEKLVGAFSNSRESDYFYASLYAGLYYESQNESDAA 227

Query: 275 KLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308
           K+HI+AAC+S YGQRSDDYMA+L+KVH LCRNW+
Sbjct: 228 KVHIVAACKSLYGQRSDDYMASLSKVHCLCRNWN 261

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542812|ref|XP_002512469.1| conserved hypothetical protein [Ricinus communis] gi|223548430|gb|EEF49921.1| conserved hypothetical protein [Ricinus communis]

 Score =  369 bits (947), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 178/229 (77%), Positives = 198/229 (86%), Gaps = 12/229 (5%)

Query: 82  LFST--PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD 139
           +FST   R H LQ+  P  +RRLF+P+VSGIWDALTG NNN+REAV+AIRRGMLLFRQGD
Sbjct: 1   MFSTIPSRIHNLQHPLPILSRRLFLPAVSGIWDALTGANNNAREAVLAIRRGMLLFRQGD 60

Query: 140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF 199
           V+GS+ EFDKA+ELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR+DVAQNPNDTEESIWCF
Sbjct: 61  VLGSLVEFDKAMELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCF 120

Query: 200 LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASL 259
                     +AR +FLEVGRDPRPVMREAY+MFK GGDPEKLV AFS+GRENEYFYASL
Sbjct: 121 ----------QARKQFLEVGRDPRPVMREAYSMFKDGGDPEKLVTAFSNGRENEYFYASL 170

Query: 260 YAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308
           YAGL++ESQ + DAAK HI+AA +SPYGQ SDDYMAALA VH LCRNWS
Sbjct: 171 YAGLYHESQNEPDAAKFHIVAASKSPYGQGSDDYMAALANVHCLCRNWS 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511867|gb|AFK43995.1| unknown [Lotus japonicus]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 181/227 (79%), Positives = 203/227 (89%), Gaps = 9/227 (3%)

Query: 91  LQNRAPTF-------TRRLFIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVV 141
           L ++AP F       TRRLF+PSVS IWDA+TGGNNN+  REA++AIRRGM LFRQGDV 
Sbjct: 29  LPSKAPIFCSNPSILTRRLFLPSVSAIWDAVTGGNNNNNGREALLAIRRGMSLFRQGDVS 88

Query: 142 GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201
           GSV EFDKAI+LDPRQKAYLWQRGLSLYYL+RFEEGAEQFR+DVAQNPNDTEESIWCFLC
Sbjct: 89  GSVVEFDKAIQLDPRQKAYLWQRGLSLYYLNRFEEGAEQFRLDVAQNPNDTEESIWCFLC 148

Query: 202 EAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYA 261
           EAQLYGVDEAR R+LEVGRD RPVMREAYNMF+ GGDPEKLVAAFS+GRE EYFYASLYA
Sbjct: 149 EAQLYGVDEARKRYLEVGRDSRPVMREAYNMFRDGGDPEKLVAAFSNGREGEYFYASLYA 208

Query: 262 GLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308
           GL+YESQ + DAAK+H++AAC+S YGQRSDDY A+L+KVH LCRNW+
Sbjct: 209 GLYYESQNETDAAKVHMVAACQSSYGQRSDDYTASLSKVHCLCRNWT 255

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679555|ref|NP_683531.2| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|27311659|gb|AAO00795.1| Unknown protein [Arabidopsis thaliana] gi|30023732|gb|AAP13399.1| At3g05625 [Arabidopsis thaliana] gi|332640747|gb|AEE74268.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/267 (68%), Positives = 213/267 (79%), Gaps = 14/267 (5%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF 103
           M+LTQ ++ P I P      R++      +S    ++  FS    H L       +RRLF
Sbjct: 1   MSLTQ-IVNPIIYP-----SRTIPRRFTAISPFKTLSPQFSRHPPHAL-------SRRLF 47

Query: 104 IPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW 162
           +PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGDV GSVAEFD+AI LDPRQKAYLW
Sbjct: 48  LPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIILDPRQKAYLW 107

Query: 163 QRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDP 222
           QRGLSLYY+DRFEEGAEQFRIDVAQNPNDTEESIWCF+CEA+L+GVD AR +FLEVGRD 
Sbjct: 108 QRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVARTQFLEVGRDS 167

Query: 223 RPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC 282
           RPVMREAYN+FK GGDPEKLV  FSSG+ +EYFYASLYAGL+YE++ K++ AK H+ AAC
Sbjct: 168 RPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASLYAGLYYEAEGKSENAKFHLTAAC 227

Query: 283 ESPYGQRSDDYMAALAKVHSLCRNWSS 309
            SPYGQRSDDYMA+LAKVH LCRNWSS
Sbjct: 228 GSPYGQRSDDYMASLAKVHCLCRNWSS 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829092|ref|XP_002882428.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297328268|gb|EFH58687.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 181/267 (67%), Positives = 210/267 (78%), Gaps = 14/267 (5%)

Query: 44  MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF 103
           M+LTQ ++ P I P      R++      +S    +N  FS    H L       +RRLF
Sbjct: 1   MSLTQ-IVNPIIYP-----SRTIPRRFTAISPFQTLNPQFSRHPPHAL-------SRRLF 47

Query: 104 IPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW 162
           +PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGDV GSVAEFD+AI LDPRQKAYLW
Sbjct: 48  LPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIVLDPRQKAYLW 107

Query: 163 QRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDP 222
           QRGLSLYY+DRFEEGAEQFRIDVAQNPNDTEESIWCF+CEA+L+GVD AR +FLEVGRD 
Sbjct: 108 QRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCFICEARLHGVDVARKQFLEVGRDS 167

Query: 223 RPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC 282
           RPVMREAYN+FK GGDPEKLV  F SG+ +EYFYASLYAGL+YE++ K++ AK HI AA 
Sbjct: 168 RPVMREAYNLFKNGGDPEKLVNDFLSGQASEYFYASLYAGLYYEAEGKSENAKFHITAAS 227

Query: 283 ESPYGQRSDDYMAALAKVHSLCRNWSS 309
            SPYGQRSDDYMA+LAKVH L RNWSS
Sbjct: 228 GSPYGQRSDDYMASLAKVHCLSRNWSS 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:504955885	257	AT3G05625 "AT3G05625" [Arabido	0.738	0.891	0.747	3e-92

TAIR|locus:504955885 AT3G05625 "AT3G05625" [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 172/230 (74%), Positives = 198/230 (86%)

Query:    81 SLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGD 139
             S F T    + ++     +RRLF+PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGD
Sbjct:    25 SPFKTLSPQFSRHPPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGD 84

Query:   140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF 199
             V GSVAEFD+AI LDPRQKAYLWQRGLSLYY+DRFEEGAEQFRIDVAQNPNDTEESIWCF
Sbjct:    85 VAGSVAEFDRAIILDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPNDTEESIWCF 144

Query:   200 LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASL 259
             +CEA+L+GVD AR +FLEVGRD RPVMREAYN+FK GGDPEKLV  FSSG+ +EYFYASL
Sbjct:   145 ICEARLHGVDVARTQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQASEYFYASL 204

Query:   260 YAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSS 309
             YAGL+YE++ K++ AK H+ AAC SPYGQRSDDYMA+LAKVH LCRNWSS
Sbjct:   205 YAGLYYEAEGKSENAKFHLTAACGSPYGQRSDDYMASLAKVHCLCRNWSS 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      310       310   0.00079  116 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  232 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.09u 0.12s 26.21t   Elapsed:  00:00:02
  Total cpu time:  26.09u 0.12s 26.21t   Elapsed:  00:00:02
  Start:  Fri May 10 03:30:54 2013   End:  Fri May 10 03:30:56 2013

GO:0008150 "biological_process" evidence=ND

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130116 hypothetical protein (271 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-06
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	8e-06
PRK11189	296	PRK11189, PRK11189, lipoprotein NlpI; Provisional	5e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.002

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-DRFEEGAEQ 180
             A      G  LF+ GD   ++  ++KA+ELDP      +   L+   L   +EE  E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 181 FRIDVAQNP 189
               +  +P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
           G+ L + G+   +   FD  +ELDP        RG++LYY  R++   +        +PN
Sbjct: 106 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165

Query: 191 DTEESIWCFLCEAQL 205
           D   S+W +L E +L
Sbjct: 166 DPFRSLWLYLNEQKL 180

Length = 297

>gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 147 FDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 205
           FD  +ELDP    AYL  RG++LYY  R+E   +        +PND   ++W +L E++L
Sbjct: 121 FDSVLELDPTYNYAYL-NRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKL 179

Length = 296

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           +  G L ++ GD   ++  ++KA+ELDP      +    + Y L ++EE  E +   +  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 188 NPNDTE-ESIWCFLCEAQLYGVDEARNRFLEV 218
           +P++ +                +EA   + + 
Sbjct: 64  DPDNAKAYYNLGLAYYKLGK-YEEALEAYEKA 94

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 17/71 (23%), Positives = 33/71 (46%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
           +   A          ++ G    ++ +++KA+ELDP      +  GL+ Y L ++EE  E
Sbjct: 30  DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Query: 180 QFRIDVAQNPN 190
            +   +  +PN
Sbjct: 90  AYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 34/150 (22%), Positives = 48/150 (32%), Gaps = 31/150 (20%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           +G LL   G++  ++A + KAI L P   A L      L     FEE  +     + + P
Sbjct: 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

Query: 190 NDTEESIWCFLCEAQLYG-VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS 248
           N              L   VD  +  + E  R                   E L  A  S
Sbjct: 259 NSPL--------AHYLKALVDFQKKNY-EDAR-------------------ETLQDALKS 290

Query: 249 GRENEYFYASLYAGLFYESQKKADAAKLHI 278
               EY  A L AG         + A  ++
Sbjct: 291 A--PEYLPALLLAGASEYQLGNLEQAYQYL 318

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 22/82 (26%), Positives = 35/82 (42%)

Query: 112 DALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL 171
            AL  G    +EA+    RG     +G  + ++A+  K+IELDPR      +R      L
Sbjct: 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL 378

Query: 172 DRFEEGAEQFRIDVAQNPNDTE 193
              ++  E F   +  N  D +
Sbjct: 379 GDPDKAEEDFDKALKLNSEDPD 400

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 121 SREAVVAIR--RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY--LDRFEE 176
            R     IR    +    QGD+  +    DKA+E DP    YL    L+LYY  L   E+
Sbjct: 26  DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEK 83

Query: 177 GAEQFRIDVAQNPNDTE--ESIWCFLCEAQLYGVDEARNRFLEVGRDP 222
             + FR  +  NPN+ +   +   FLC+   Y  ++A  +F +   DP
Sbjct: 84  AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY--EQAMQQFEQAIEDP 129

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK11189	296	lipoprotein NlpI; Provisional	99.77
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.76
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.73
PRK12370	553	invasion protein regulator; Provisional	99.67
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.64
PRK11189	296	lipoprotein NlpI; Provisional	99.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.61
PRK12370	553	invasion protein regulator; Provisional	99.59
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.59
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.56
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.55
PRK15359	144	type III secretion system chaperone protein SscB;	99.55
KOG1126	638	consensus DNA-binding cell division cycle control	99.51
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.5
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.49
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.47
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.47
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.44
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.42
KOG0553	304	consensus TPR repeat-containing protein [General f	99.4
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.4
PLN02789	320	farnesyltranstransferase	99.38
PRK15359	144	type III secretion system chaperone protein SscB;	99.38
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.33
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.33
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.32
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.29
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.24
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.23
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.22
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.21
KOG1125	579	consensus TPR repeat-containing protein [General f	99.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.19
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.18
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.17
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.15
KOG0553	304	consensus TPR repeat-containing protein [General f	99.14
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.11
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.11
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.06
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.05
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.04
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.03
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.02
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.02
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.98
PLN02789	320	farnesyltranstransferase	98.96
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.96
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.95
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.89
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.87
PRK14574	822	hmsH outer membrane protein; Provisional	98.86
KOG2076	895	consensus RNA polymerase III transcription factor	98.85
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.82
KOG1125	579	consensus TPR repeat-containing protein [General f	98.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.8
KOG1129	478	consensus TPR repeat-containing protein [General f	98.78
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.75
PF13371	73	TPR_9: Tetratricopeptide repeat	98.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.74
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.74
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.72
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.7
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.7
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.7
PRK15331	165	chaperone protein SicA; Provisional	98.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.64
KOG2003	840	consensus TPR repeat-containing protein [General f	98.63
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.62
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.61
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.57
KOG2076	895	consensus RNA polymerase III transcription factor	98.57
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.57
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.57
PF12688	120	TPR_5: Tetratrico peptide repeat	98.55
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.54
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.52
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.52
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.5
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.48
PRK10803	263	tol-pal system protein YbgF; Provisional	98.48
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.46
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.45
PRK14574	822	hmsH outer membrane protein; Provisional	98.45
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.45
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.4
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.38
KOG1129	478	consensus TPR repeat-containing protein [General f	98.38
PRK11906	458	transcriptional regulator; Provisional	98.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.37
KOG4234	271	consensus TPR repeat-containing protein [General f	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.34
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.33
PRK11906	458	transcriptional regulator; Provisional	98.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.32
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.31
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.3
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.26
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.25
KOG4555	175	consensus TPR repeat-containing protein [Function	98.25
PRK10803	263	tol-pal system protein YbgF; Provisional	98.24
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.22
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.21
PRK15331	165	chaperone protein SicA; Provisional	98.18
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.17
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.15
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.15
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.14
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.13
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.12
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.12
KOG4555	175	consensus TPR repeat-containing protein [Function	98.09
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.09
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.09
PF13371	73	TPR_9: Tetratricopeptide repeat	98.06
PLN03218	1060	maturation of RBCL 1; Provisional	98.06
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.05
KOG2003	840	consensus TPR repeat-containing protein [General f	98.05
PF13431	34	TPR_17: Tetratricopeptide repeat	98.05
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.04
PLN03218	1060	maturation of RBCL 1; Provisional	98.01
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.01
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.0
PF13428	44	TPR_14: Tetratricopeptide repeat	97.99
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.99
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.97
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.96
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.94
PLN03077	857	Protein ECB2; Provisional	97.93
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.93
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.91
PF13512	142	TPR_18: Tetratricopeptide repeat	97.91
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.9
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.87
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.86
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.85
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.85
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.82
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.81
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.78
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.78
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.72
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.71
KOG4234	271	consensus TPR repeat-containing protein [General f	97.71
PF12688	120	TPR_5: Tetratrico peptide repeat	97.7
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.67
PF13431	34	TPR_17: Tetratricopeptide repeat	97.64
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.63
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.61
PLN03077	857	Protein ECB2; Provisional	97.61
PF13512	142	TPR_18: Tetratricopeptide repeat	97.57
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.54
PF13428	44	TPR_14: Tetratricopeptide repeat	97.51
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.51
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.25
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.21
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.16
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.16
PRK04841	903	transcriptional regulator MalT; Provisional	97.14
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.14
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.11
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.1
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.08
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.96
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.96
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.95
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.93
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.93
PRK04841	903	transcriptional regulator MalT; Provisional	96.92
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.9
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.85
PRK10941	269	hypothetical protein; Provisional	96.8
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.75
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.68
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.66
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.53
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.49
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.41
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.04
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.95
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.89
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.89
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.78
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.73
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.69
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.55
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.43
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.38
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.36
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.27
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.93
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.93
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.83
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.44
KOG1310	758	consensus WD40 repeat protein [General function pr	94.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.27
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.09
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.99
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.91
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.9
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.67
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.54
KOG2471	696	consensus TPR repeat-containing protein [General f	93.51
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.26
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.26
COG2912	269	Uncharacterized conserved protein [Function unknow	93.26
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.89
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.32
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.32
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.1
KOG1585	308	consensus Protein required for fusion of vesicles	91.5
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.27
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.17
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.16
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.16
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.09
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.6
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	90.54
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	89.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.47
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.47
KOG2471	696	consensus TPR repeat-containing protein [General f	89.08
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	89.07
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.17
KOG1310	758	consensus WD40 repeat protein [General function pr	88.09
PRK10941	269	hypothetical protein; Provisional	88.0
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.7
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	87.35
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.3
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	87.22
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.19
KOG3364	149	consensus Membrane protein involved in organellar	87.16
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.08
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	86.76
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	86.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.36
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.3
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.09
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.88
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	85.48
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.12
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	85.02
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	84.77
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.21
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.84
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	83.54
COG3898	531	Uncharacterized membrane-bound protein [Function u	82.92
COG5191	435	Uncharacterized conserved protein, contains HAT (H	81.61
COG3629	280	DnrI DNA-binding transcriptional activator of the	80.9
KOG1585	308	consensus Protein required for fusion of vesicles	80.74
KOG2610	491	consensus Uncharacterized conserved protein [Funct	80.17
KOG1941	518	consensus Acetylcholine receptor-associated protei	80.15

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-31  Score=257.53  Aligned_cols=299  Identities=18%  Similarity=0.164  Sum_probs=201.1

Q ss_pred             cccccchhhHHHhhhccc-chhhhhhh-----hhhhhhhheehhhhhhhhhhh---cCCCC--------------CCCch
Q 021611            4 TFGALSLSQTYQKSRTQL-PKILHLHQ-----LYYYKFCIFFQFTSMALTQHV---LKPTI--------------NPPLY   60 (310)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~~   60 (310)
                      ||.||++||+|+|+++|| .|+|.|.+     +|.|++||+++|.|.|++--+   ||+++              .|||+
T Consensus       172 ~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~  251 (606)
T KOG0547|consen  172 CTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA  251 (606)
T ss_pred             HHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH
Confidence            799999999999999999 99999999     899999999999998876544   88777              79999


Q ss_pred             hhhhhhhccCCCccccccccccc------------------------------------ccCccccc----CCCCccccc
Q 021611           61 SFHRSLLTSKAPLSVQTHINSLF------------------------------------STPRGHYL----QNRAPTFTR  100 (310)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~----~~~~~~~~~  100 (310)
                      +||-||+.||.+.+-+...++.-                                    +....+..    +..+.++.-
T Consensus       252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~  331 (606)
T KOG0547|consen  252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL  331 (606)
T ss_pred             HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence            99999999998877633222210                                    00000000    000111111


Q ss_pred             hh-------cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh
Q 021611          101 RL-------FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR  173 (310)
Q Consensus       101 ~~-------~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~  173 (310)
                      ++       ..-++...++++|.  ++|.+...|+.||.+|..+.+.++-..+|++|..+||.++..|+.||.+++.+++
T Consensus       332 ~gtF~fL~g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q  409 (606)
T KOG0547|consen  332 RGTFHFLKGDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ  409 (606)
T ss_pred             hhhhhhhcCCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence            11       23345566667777  8888777788888888888888888888888888888888888888888888888


Q ss_pred             hhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHH----hhcCCCChHHHHHHhcC-
Q 021611          174 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYN----MFKGGGDPEKLVAAFSS-  248 (310)
Q Consensus       174 ~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~----l~~~~~~~e~al~~~~~-  248 (310)
                      |++|+.+|++|++++|++..+++....+..+.++++++...|.++...... ..++|.    .+..++++++|++.+.. 
T Consensus       410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            888888888888888887765444333333677777777777665432110 113333    33445666667666642 


Q ss_pred             -CCCcc----hhHh--hhhhhh-hhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          249 -GRENE----YFYA--SLYAGL-FYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       249 -~~~~d----~~~a--~~~lG~-~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                       .+.+.    ...+  ....|+ +..=.+++.+|+..+++|+++.  ++++..+-+||.+.+++|+.
T Consensus       489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  489 IELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKI  553 (606)
T ss_pred             HhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhH
Confidence             12221    1111  112222 2222377788888888888743  56677777888887777763

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1.4e-23  Score=214.64  Aligned_cols=279  Identities=19%  Similarity=0.109  Sum_probs=211.8

Q ss_pred             ccccchhhHHHhhhccc-chhhhhhh-----hhhhhhhheehhhhhhhhhhh---cCC-------------CCCCCchhh
Q 021611            5 FGALSLSQTYQKSRTQL-PKILHLHQ-----LYYYKFCIFFQFTSMALTQHV---LKP-------------TINPPLYSF   62 (310)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~   62 (310)
                      ..||.++|+++|+..|| .+|.++.+     .||++.|++++|.+.+..+.+   +++             ..++|+.+|
T Consensus       184 ~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~  263 (615)
T TIGR00990       184 TAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTF  263 (615)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            46899999999999999 99999998     689999999999987765554   222             238999999


Q ss_pred             hhhhhccCCCcccccccccccccCcccccCCCCccc-------cchhcccchhhhhhhhcCC-CCchhHHHHHHHhhhhh
Q 021611           63 HRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTF-------TRRLFIPSVSGIWDALTGG-NNNSREAVVAIRRGMLL  134 (310)
Q Consensus        63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~ai~~-~~~P~~~~a~~~rG~~~  134 (310)
                      +++|+..+.+......++.... +.... ......+       ...+.+.+|...|++++.. ..+|+.+.+|..+|.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~  341 (615)
T TIGR00990       264 VGNYLQSFRPKPRPAGLEDSNE-LDEET-GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK  341 (615)
T ss_pred             HHHHHHHccCCcchhhhhcccc-ccccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence            9999998877665432221110 00000 0000000       0112355677888888762 34699999999999999


Q ss_pred             eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHh
Q 021611          135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR  214 (310)
Q Consensus       135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~  214 (310)
                      +.+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+..|+++++++|+++..+..++.+...+|++++|+..
T Consensus       342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  421 (615)
T TIGR00990       342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD  421 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999987555444445578999999999


Q ss_pred             HHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          215 FLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       215 l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      +.++.   |+....+......+...|++++++..+..  ...|+....+.++|.++..+|++++|+..|++|+++.
T Consensus       422 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            88743   33222222233344457889998888763  2345556677789999999999999999999999964

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.77  E-value=3.6e-19  Score=167.03  Aligned_cols=196  Identities=18%  Similarity=0.213  Sum_probs=147.0

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+....|...|++++.  ++|+++.+|+.+|.++...|++++|++.|+++++++|++..+++++|.+++..|++++|+++
T Consensus        77 ~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~  154 (296)
T PRK11189         77 LGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD  154 (296)
T ss_pred             CCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3455678888888998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-CCChhhHHH-HHHhhcCCCChHHHHHHhc----CC--CCc
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-RDPRPVMRE-AYNMFKGGGDPEKLVAAFS----SG--REN  252 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-~d~~~~~~~-a~~l~~~~~~~e~al~~~~----~~--~~~  252 (310)
                      |+++++++|+++...+|..+.. ..+++++|+..+.+.. ..+.+.+.. ...++.+....+++++.+.    ..  ..+
T Consensus       155 ~~~al~~~P~~~~~~~~~~l~~-~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~  233 (296)
T PRK11189        155 LLAFYQDDPNDPYRALWLYLAE-SKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE  233 (296)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHH-ccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH
Confidence            9999999999975445543332 4567999999986532 222222221 1122232333333443332    11  123


Q ss_pred             chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 021611          253 EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKV  300 (310)
Q Consensus       253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~  300 (310)
                      ....+++++|.++..+|++++|+.+|++|++++.. ...+|.+.+-.+
T Consensus       234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~~e~~~~~~e~  280 (296)
T PRK11189        234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NFVEHRYALLEL  280 (296)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hHHHHHHHHHHH
Confidence            45678999999999999999999999999996532 334666655443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=5.3e-19  Score=174.72  Aligned_cols=194  Identities=13%  Similarity=0.103  Sum_probs=146.4

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      +...|.++..  ++|+.+++|+++|.+|-..+.|++|+..|.+|+.+.|++..++-++|.+|+.+|..|-|++.|++|++
T Consensus       237 aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~  314 (966)
T KOG4626|consen  237 AIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE  314 (966)
T ss_pred             HHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence            4444555555  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccceeeeehhh--hhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhh
Q 021611          187 QNPNDTEESIWCFLCEA--QLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASL  259 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~  259 (310)
                      ++|+++++  +++++.+  ..|+..||.+++.+   ..+.....+..+...+..++.+|+|...+...  -.|+...++.
T Consensus       315 ~~P~F~~A--y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n  392 (966)
T KOG4626|consen  315 LQPNFPDA--YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN  392 (966)
T ss_pred             cCCCchHH--HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence            99999885  4455555  67889999888766   34445555555555666677777776666533  2455566677


Q ss_pred             hhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          260 YAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       260 ~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      ++|.+|.++|++++|+.+|+.|++++..  -.|.+.|+|.++-.+|+
T Consensus       393 NLa~i~kqqgnl~~Ai~~YkealrI~P~--fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  393 NLASIYKQQGNLDDAIMCYKEALRIKPT--FADALSNMGNTYKEMGD  437 (966)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHhcCch--HHHHHHhcchHHHHhhh
Confidence            7778888888888888888888775532  34666677666655553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=2e-18  Score=170.65  Aligned_cols=195  Identities=13%  Similarity=0.043  Sum_probs=111.3

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ..+=|.+.|.++|+  ++|+.+++|.++|.++-..|+..||+..|++|+++.|+.+.+.+++|.++.++|.+++|...|.
T Consensus       301 ~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~  378 (966)
T KOG4626|consen  301 LLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL  378 (966)
T ss_pred             cHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence            34445555556665  6666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYA  257 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a  257 (310)
                      ++++..|+.+.+..+.+....+.|++++|+.++.++.   |.....+......++..|+..+|++++.  +..+|....|
T Consensus       379 ~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA  458 (966)
T KOG4626|consen  379 KALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA  458 (966)
T ss_pred             HHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence            6666666655532222222225566666666655432   2222222222233445556666666664  2345556666


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHh
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVH  301 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~  301 (310)
                      |-++|.+|.+.|++.+|++.|+.|++++.  ..++..-||+..+
T Consensus       459 hsNLasi~kDsGni~~AI~sY~~aLklkP--DfpdA~cNllh~l  500 (966)
T KOG4626|consen  459 HSNLASIYKDSGNIPEAIQSYRTALKLKP--DFPDAYCNLLHCL  500 (966)
T ss_pred             HhhHHHHhhccCCcHHHHHHHHHHHccCC--CCchhhhHHHHHH
Confidence            77777777777777777777777777543  3446666665443

>PRK12370 invasion protein regulator; Provisional

Probab=99.67  E-value=9.4e-17  Score=162.79  Aligned_cols=198  Identities=9%  Similarity=-0.034  Sum_probs=153.7

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheec---------cccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF  174 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~---------g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~  174 (310)
                      ..+|..++.+++.  ++|+++.+|..+|.++..+         +++++|+..+++|++++|+++.++..+|.++...|++
T Consensus       277 ~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        277 LQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            3467788889998  9999999999999877644         4478999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhh-HHHHHHhhcCCCChHHHHHHhcCC-
Q 021611          175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPV-MREAYNMFKGGGDPEKLVAAFSSG-  249 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~-~~~a~~l~~~~~~~e~al~~~~~~-  249 (310)
                      ++|+..|+++++++|+++.++.+.+.+....|++++|+..+.++   .|+.... +..+..++. .|++++|++.+... 
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~~~~~l  433 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIRLGDELR  433 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence            99999999999999999886555555556889999999988774   3332211 222222333 56788887776532 


Q ss_pred             --CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          250 --RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       250 --~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                        .+++...++.++|.++..+|++++|+..+++.....  ..+..++..++..+++.|+
T Consensus       434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~  490 (553)
T PRK12370        434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNSE  490 (553)
T ss_pred             HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccHH
Confidence              234455567889999999999999999999987733  2344666677777777663

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.64  E-value=2.7e-16  Score=161.07  Aligned_cols=200  Identities=12%  Similarity=0.099  Sum_probs=111.0

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..+|...+++++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.+++.+|++++|+.+|++
T Consensus       347 ~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k  424 (615)
T TIGR00990       347 HLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK  424 (615)
T ss_pred             HHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4456666666666  66776777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc--h--
Q 021611          184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE--Y--  254 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d--~--  254 (310)
                      +++++|++...+...+.+..++|++++|+..+.++.   |+....+......+...|++++|+..+...  ..++  .  
T Consensus       425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~  504 (615)
T TIGR00990       425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY  504 (615)
T ss_pred             HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence            777777665532222222335666666666665532   222222222222344456666665554311  1111  0  


Q ss_pred             --hHhhhhh-hhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          255 --FYASLYA-GLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       255 --~~a~~~l-G~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                        ....+.. +.++...|++++|+.++++++++.  +.+...+..+|.++.++|++
T Consensus       505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~  558 (615)
T TIGR00990       505 MNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDV  558 (615)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCH
Confidence              0011111 223333566666666666666643  23344555666666666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.63  E-value=3.3e-16  Score=147.02  Aligned_cols=200  Identities=14%  Similarity=0.062  Sum_probs=142.5

Q ss_pred             ccchhhhhhhhcCC-CCch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGG-NNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       104 ~~~a~~~~~~ai~~-~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      ...+...+++++.. .++| +.+..|+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+|++++|++.|
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~  121 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF  121 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34566777777752 3455 458999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-CCChhhHHHHHH-hhcCCCChHHHHHHhcCC---CCcchhH
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-RDPRPVMREAYN-MFKGGGDPEKLVAAFSSG---RENEYFY  256 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-~d~~~~~~~a~~-l~~~~~~~e~al~~~~~~---~~~d~~~  256 (310)
                      +++++++|++..++..++.+....|++++|+..+.++. .+|.......+. +....++.++|+..+...   .+++.  
T Consensus       122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--  199 (296)
T PRK11189        122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--  199 (296)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--
Confidence            99999999998755444444557899999999987743 233322222221 233456788887777421   12221  


Q ss_pred             hhhhhhhhhhhccchhhHHHHHHHhhc---CC--CCCCChHHHHHHHHHhhcccCCc
Q 021611          257 ASLYAGLFYESQKKADAAKLHILAACE---SP--YGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       257 a~~~lG~~~~~~G~~d~A~~~~~kAl~---~~--~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                       + ..+..+..+|+.+++ ..+..+++   ..  ...+..+.++.||.++...|++.
T Consensus       200 -~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~  253 (296)
T PRK11189        200 -W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD  253 (296)
T ss_pred             -c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence             1 135555667777554 24444442   11  12234567889999999999863

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.7e-16  Score=153.75  Aligned_cols=180  Identities=17%  Similarity=0.113  Sum_probs=149.9

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .....+..|+.+..  +||+|++.|++||.+++-+++|++|+++|+++++|+|.+.-++.+++.+++++++++++...|+
T Consensus       375 ~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe  452 (606)
T KOG0547|consen  375 QSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE  452 (606)
T ss_pred             ccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677778887  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---C-------CChhhHHHHHHhhcCCCChHHHHHHhcC--CC
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---R-------DPRPVMREAYNMFKGGGDPEKLVAAFSS--GR  250 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~-------d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~  250 (310)
                      .+.+.=|+.++.+...+-.+.-.++++.|.+.++++.   +       .+.|....+..++.-.+++.+++..+..  ..
T Consensus       453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~  532 (606)
T KOG0547|consen  453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL  532 (606)
T ss_pred             HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence            9999999999976665555556778999999887632   2       2345555555555555677778777763  34


Q ss_pred             CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          251 ENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       251 ~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      +|....|...+|.+-.++|++++|++.|++++.+
T Consensus       533 Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  533 DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5666777788999999999999999999999873

>PRK12370 invasion protein regulator; Provisional

Probab=99.59  E-value=1.9e-15  Score=153.29  Aligned_cols=177  Identities=14%  Similarity=0.038  Sum_probs=139.7

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+.+++.  ++|+++.+|..+|.++..+|++++|++.|++|++++|+++.+++.+|.++...|++++|+..|+
T Consensus       319 ~~~~A~~~~~~Al~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        319 AMIKAKEHAIKATE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            35678888999998  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc----CCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhH
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG----RDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFY  256 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~----~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~  256 (310)
                      ++++++|+++....+........|++++|+..+.++.    ++.......+...+...|+.++|.+.+..  ...++...
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~  476 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI  476 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH
Confidence            9999999987643332223346788999999887743    22222222233345567899998887763  23445555


Q ss_pred             hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          257 ASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       257 a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      +...++..|..+|  ++|...+++.++
T Consensus       477 ~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        477 AVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            6666777888788  488888888666

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.59  E-value=1.7e-15  Score=156.62  Aligned_cols=273  Identities=11%  Similarity=0.003  Sum_probs=166.6

Q ss_pred             hhhhhhhhhhhheehhhhhhhhhhhcCCCCCCCchhhhhhhhccCCCcccccccccccccCcccc---cCCCCccccchh
Q 021611           26 HLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHY---LQNRAPTFTRRL  102 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~  102 (310)
                      -|+|-|+...|.+++=.-++++.+-   -..--.--|+-..+.+.++..+..-+...+...-.|.   +.-++..+ ..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l-~~g   90 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSA---GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPL-ASS   90 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhc---ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHh-hcC
Confidence            4677899999999876666665543   0111223467777777777666322222221111110   00011111 233


Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+++++.  .+|+++.+|..+|.++...|++++|++.|+++++++|+++.++..+|.++...|++++|+..++
T Consensus        91 ~~~~A~~~l~~~l~--~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~  168 (656)
T PRK15174         91 QPDAVLQVVNKLLA--VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR  168 (656)
T ss_pred             CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            56778999999998  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CCh--h-hHHHHHHhhcCCCChHHHHHHhcC--CCCcchhH
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPR--P-VMREAYNMFKGGGDPEKLVAAFSS--GRENEYFY  256 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~--~-~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~  256 (310)
                      +++..+|+++..+.+. ......|++++|...+.++.. ++.  . ........+...|+.++++..+..  ...|+...
T Consensus       169 ~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~  247 (656)
T PRK15174        169 TQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA  247 (656)
T ss_pred             HHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence            9999999887643332 123356778888776655322 111  1 111111122234455554444431  12233333


Q ss_pred             hhhhhhhhhhhccchhh----HHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          257 ASLYAGLFYESQKKADA----AKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       257 a~~~lG~~~~~~G~~d~----A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      +++.+|.++..+|++++    |+..|++++++.  +.+...+.++|.++...|+|
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~  300 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQN  300 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCH
Confidence            44445555555555443    455555555422  12334444445554444443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.56  E-value=1.2e-14  Score=150.39  Aligned_cols=205  Identities=7%  Similarity=-0.163  Sum_probs=162.7

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      -+.+-..+|..++..++.  ..|+++.+++.+|.+....|++++|++.|+++++++|+++.++..+|.++...|++++|+
T Consensus        53 ~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai  130 (656)
T PRK15174         53 LRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA  130 (656)
T ss_pred             HhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            344467788899998888  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--C-Cc
Q 021611          179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--R-EN  252 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~-~~  252 (310)
                      +.|+++++++|+++..+.....+....|++++|...+.++   .+++......... +...|++++|+..+...  . +.
T Consensus       131 ~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~  209 (656)
T PRK15174        131 DLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFAL  209 (656)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999998874443333344789999999877653   3443333322222 34478888887776521  1 11


Q ss_pred             chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          253 EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +.......+|.++..+|++++|+..|+++++..  +.+.+.+.++|.++..+|++.
T Consensus       210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~  263 (656)
T PRK15174        210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSR  263 (656)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCch
Confidence            222333456788899999999999999999954  356788899999999999874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.55  E-value=1.3e-14  Score=126.11  Aligned_cols=185  Identities=16%  Similarity=0.130  Sum_probs=142.2

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC  201 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~  201 (310)
                      ..+.+++++|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++.......+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999877643333333


Q ss_pred             hhhhcChHHHHHhHHHhcCCC-----hhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhH
Q 021611          202 EAQLYGVDEARNRFLEVGRDP-----RPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAA  274 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~~~d~-----~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A  274 (310)
                      ....|++++|...+.++...+     ...+......+...|+.+++...+..  ...++...++..+|.++..+|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            447789999999888754321     11122222234456788887776652  22344455677899999999999999


Q ss_pred             HHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          275 KLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       275 ~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      ..+++++++..  +.+.+.++.++.++...|++.
T Consensus       189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  220 (234)
T TIGR02521       189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVA  220 (234)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHH
Confidence            99999999952  345677788888888888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.55  E-value=9.6e-15  Score=123.19  Aligned_cols=81  Identities=12%  Similarity=0.171  Sum_probs=75.9

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      ..+++++++  ++|++   ++.+|.++...|++++|++.|++++.++|++..++.++|.++..+|++++|+..|++++++
T Consensus        13 ~~~~~~al~--~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLS--VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHH--cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            367889998  99986   6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc
Q 021611          188 NPNDTE  193 (310)
Q Consensus       188 ~P~d~~  193 (310)
                      +|+++.
T Consensus        88 ~p~~~~   93 (144)
T PRK15359         88 DASHPE   93 (144)
T ss_pred             CCCCcH
Confidence            998865

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.3e-14  Score=143.15  Aligned_cols=185  Identities=15%  Similarity=0.122  Sum_probs=109.4

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      +.+|+.|+.|-..|+++..+++++.||..|.|||++||+|.-+|.-+|-=+....+||.|..+|++|+.++|++-.  +|
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn--Aw  492 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN--AW  492 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH--HH
Confidence            3788889999999999999999999999999999998887777666666666666666666666666666666654  45


Q ss_pred             eeehhh--hhcChHHHHHhHHHhcC-CChhh--HHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611          198 CFLCEA--QLYGVDEARNRFLEVGR-DPRPV--MREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK  270 (310)
Q Consensus       198 ~~l~~a--~l~~~~eA~~~l~~~~~-d~~~~--~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~  270 (310)
                      ++++..  +.++++.|.-.|+++.. .|+..  +.-+...+...++.++|+..++.+  .++......|..|.++...++
T Consensus       493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR  572 (638)
T ss_pred             HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence            555444  55666666666655322 22221  111112223334455555444321  222233344455555556666


Q ss_pred             hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      +++|+..+++..++-  +...-..+.+|+.|-++|+
T Consensus       573 ~~eal~~LEeLk~~v--P~es~v~~llgki~k~~~~  606 (638)
T KOG1126|consen  573 YVEALQELEELKELV--PQESSVFALLGKIYKRLGN  606 (638)
T ss_pred             hHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHcc
Confidence            666666665555522  1222344555555555554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.50  E-value=5.1e-14  Score=153.86  Aligned_cols=202  Identities=11%  Similarity=0.065  Sum_probs=146.4

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccc-------------
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLS-------------  167 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a-------------  167 (310)
                      .+...+|...|.+++.  ++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..++.+             
T Consensus       364 ~g~~~eA~~~~~~Al~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l  441 (1157)
T PRK11447        364 ANNLAQAERLYQQARQ--VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI  441 (1157)
T ss_pred             CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3356678888888998  9999999999999999999999999999999999999988776655443             


Q ss_pred             -----------------------------hhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          168 -----------------------------LYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       168 -----------------------------~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                                                   +...|++++|++.|+++++++|+++........+..+.|++++|+..+.++
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a  521 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL  521 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                                         445799999999999999999998764444444445789999999888764


Q ss_pred             c---CCChh-hHHHHHH-------------------------------------------hhcCCCChHHHHHHhcCCCC
Q 021611          219 G---RDPRP-VMREAYN-------------------------------------------MFKGGGDPEKLVAAFSSGRE  251 (310)
Q Consensus       219 ~---~d~~~-~~~~a~~-------------------------------------------l~~~~~~~e~al~~~~~~~~  251 (310)
                      .   ++... .+..+..                                           .+...|+.++|++.+..  .
T Consensus       522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~  599 (1157)
T PRK11447        522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--Q  599 (1157)
T ss_pred             HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--C
Confidence            2   22111 1111110                                           11123344444444432  2


Q ss_pred             cchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          252 NEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       252 ~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      |+....++.+|.++..+|++++|+..|+++++..  +.+.+.+.+++.++...|++.
T Consensus       600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~  654 (1157)
T PRK11447        600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLA  654 (1157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence            3344456778889999999999999999999854  345688888888888888753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.49  E-value=4.4e-14  Score=154.36  Aligned_cols=203  Identities=12%  Similarity=0.046  Sum_probs=146.0

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH--------------HHhhcc
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY--------------LWQRGL  166 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a--------------~~~~G~  166 (310)
                      .+...+|...+.+++.  ++|+++.+++.+|.++..+|++++|++.|+++++++|++...              ...+|.
T Consensus       282 ~g~~~~A~~~l~~aL~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        282 SGQGGKAIPELQQAVR--ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            3456788999999998  999999999999999999999999999999999999986431              235688


Q ss_pred             chhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChhhHHHHHHh-----------
Q 021611          167 SLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRPVMREAYNM-----------  232 (310)
Q Consensus       167 a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l-----------  232 (310)
                      ++...|++++|++.|+++++++|+++.++...+.+....|++++|++.+.++.   ++....+..+..+           
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~  439 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA  439 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence            88999999999999999999999887654333333447899999999887743   3322221111111           


Q ss_pred             -------------------------------hcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611          233 -------------------------------FKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHIL  279 (310)
Q Consensus       233 -------------------------------~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~  279 (310)
                                                     +...++.++|++.+..  ...|+...+++.+|.++..+|++++|+..|+
T Consensus       440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                           1124556666655542  2345556667778888888888888888888


Q ss_pred             HhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          280 AACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       280 kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      ++++..  +.+.+....++.++...|+|
T Consensus       520 ~al~~~--P~~~~~~~a~al~l~~~~~~  545 (1157)
T PRK11447        520 RLAQQK--PNDPEQVYAYGLYLSGSDRD  545 (1157)
T ss_pred             HHHHcC--CCCHHHHHHHHHHHHhCCCH
Confidence            888743  23456666666666655554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=5.1e-14  Score=140.65  Aligned_cols=178  Identities=18%  Similarity=0.162  Sum_probs=145.2

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      -+.|...+.++|.  +||+++=+|--+|.=+.....+|.|...|++||.++|.+..|||.+|.+|.++++++.|.-.|++
T Consensus       437 h~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk  514 (638)
T KOG1126|consen  437 HDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK  514 (638)
T ss_pred             HHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence            4568888889998  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccceeeeehh--hhhcChHHHHHhHHHhcC----CChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchh
Q 021611          184 DVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLEVGR----DPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYF  255 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~~~~----d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~  255 (310)
                      |+++||.+..  +...++.  .++|+.++|+..+.++..    ++-..+..+..++ ..+++++++..++  ...-|+..
T Consensus       515 A~~INP~nsv--i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~-~~~~~~eal~~LEeLk~~vP~es  591 (638)
T KOG1126|consen  515 AVEINPSNSV--ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF-SLGRYVEALQELEELKELVPQES  591 (638)
T ss_pred             hhcCCccchh--HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH-hhcchHHHHHHHHHHHHhCcchH
Confidence            9999998865  3344443  378999999999888432    3333333444334 4677777776665  23445667


Q ss_pred             HhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611          256 YASLYAGLFYESQKKADAAKLHILAACESPY  286 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~  286 (310)
                      ..++.+|.+|..+|+.+.|+.+|.=|.++..
T Consensus       592 ~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  592 SVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            7788999999999999999999999999653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.47  E-value=9.1e-14  Score=143.37  Aligned_cols=199  Identities=15%  Similarity=0.078  Sum_probs=120.0

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...|.+++.  .+|+++.+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.|+
T Consensus       140 ~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  217 (899)
T TIGR02917       140 QLELAQKSYEQALA--IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR  217 (899)
T ss_pred             CHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            44567777777776  7788788888888888888888888888888888888887888888888888888888888888


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChh-hHHHHHHhhcCCCChHHHHHHhcC--CCCcchhH
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRP-VMREAYNMFKGGGDPEKLVAAFSS--GRENEYFY  256 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~-~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~  256 (310)
                      ++++++|+++........+....|++++|...+.++.   ++... ....+...+ ..|++++++..+..  ...++...
T Consensus       218 ~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~~~~~~  296 (899)
T TIGR02917       218 KAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDF-QKKNYEDARETLQDALKSAPEYLP  296 (899)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCchh
Confidence            8888888776543333333345677777777665532   21111 111222222 24555655555431  11223333


Q ss_pred             hhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          257 ASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       257 a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      +++.+|.++..+|++++|+.+|+++++..  +.+......++.++...|+
T Consensus       297 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~  344 (899)
T TIGR02917       297 ALLLAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGR  344 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCC
Confidence            44455666666666666666666665522  1222333344444444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.47  E-value=3.6e-13  Score=126.37  Aligned_cols=91  Identities=18%  Similarity=0.288  Sum_probs=85.8

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      .++.+.+|..-|.+++.  .||+++.++|.||++|+.+|+...|+.+++++|++.|+|..+..+||.+++++|.+++|..
T Consensus        50 a~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~  127 (504)
T KOG0624|consen   50 ARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA  127 (504)
T ss_pred             HhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH
Confidence            34467779999999998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCC
Q 021611          180 QFRIDVAQNPNDT  192 (310)
Q Consensus       180 ~f~~Al~l~P~d~  192 (310)
                      +|+..+.-+|++-
T Consensus       128 DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  128 DFDQVLQHEPSNG  140 (504)
T ss_pred             HHHHHHhcCCCcc
Confidence            9999999999653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.44  E-value=2.3e-13  Score=140.39  Aligned_cols=200  Identities=14%  Similarity=0.071  Sum_probs=92.2

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..++...+.+.+.  ..|+++..|..+|.++...|++++|++.|+++++++|++..+++++|.++...|++++|++.|++
T Consensus       447 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  524 (899)
T TIGR02917       447 FDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK  524 (899)
T ss_pred             HHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3344444444444  44445555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhccCCCCCccceeeeehhh----------------------------------hhcChHHHHHhHHHhc---CCChhhH
Q 021611          184 DVAQNPNDTEESIWCFLCEA----------------------------------QLYGVDEARNRFLEVG---RDPRPVM  226 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a----------------------------------~l~~~~eA~~~l~~~~---~d~~~~~  226 (310)
                      +++.+|++............                                  ..|++++|...+.++.   +.....+
T Consensus       525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  604 (899)
T TIGR02917       525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW  604 (899)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            55555544332111111111                                  3344444444443321   1111112


Q ss_pred             HHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611          227 REAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLC  304 (310)
Q Consensus       227 ~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~  304 (310)
                      ......+...+++++++..+..  ...++...++..+|.++...|++++|...|+++++..  +.+.+.+..++.++...
T Consensus       605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~  682 (899)
T TIGR02917       605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAA  682 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence            2222223334555555555431  1223333445556666666666666666666666532  22334444445555544


Q ss_pred             cCC
Q 021611          305 RNW  307 (310)
Q Consensus       305 ~~~  307 (310)
                      |+|
T Consensus       683 ~~~  685 (899)
T TIGR02917       683 KRT  685 (899)
T ss_pred             CCH
Confidence            444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.44  E-value=2e-13  Score=130.75  Aligned_cols=201  Identities=12%  Similarity=0.019  Sum_probs=108.9

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      ..+|...|.+++.  .+|+++.+++.+|.++...|++++|+..++++++..+..    ..++..+|.++...|++++|+.
T Consensus        51 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  128 (389)
T PRK11788         51 PDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE  128 (389)
T ss_pred             hHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            4456666666666  667777777777777777777777777777766643211    2455666777777777777777


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChh-------hHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRP-------VMREAYNMFKGGGDPEKLVAAFSSG--  249 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~-------~~~~a~~l~~~~~~~e~al~~~~~~--  249 (310)
                      .|+++++.+|.+..++........+.|++++|+..+.++.. ++.+       .+......+...+++++|+..+...  
T Consensus       129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  208 (389)
T PRK11788        129 LFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA  208 (389)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            77777766665543222222222355666666666555321 1110       0001111223345566665555421  


Q ss_pred             CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      ..++...+++.+|.++..+|++++|+..|+++++... ....+.+..++.+++..|++
T Consensus       209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCH
Confidence            1233444555666666666666666666666665211 11123344556666666654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=2.7e-13  Score=121.30  Aligned_cols=156  Identities=19%  Similarity=0.124  Sum_probs=124.9

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      ..+.+.+|+-|+..|++..|...+++||+.||++..+|..|+.+|..+|+.+.|-+.|++|+.++|++.+...+++.-+.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999875444433333


Q ss_pred             hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          204 QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       204 ~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ..|++++|...|.++..+|.                           -+.....+-++|.|-.++|+.+.|+.+|+++++
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~---------------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063         115 AQGRPEEAMQQFERALADPA---------------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCC---------------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence            56778888777776544332                           112222344799999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhhcccCCc
Q 021611          284 SPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       284 ~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +..  ..+.....++..|..-|++.
T Consensus       168 ~dp--~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         168 LDP--QFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             hCc--CCChHHHHHHHHHHhcccch
Confidence            542  22355678888888888764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.42  E-value=3.3e-13  Score=119.91  Aligned_cols=180  Identities=19%  Similarity=0.300  Sum_probs=141.0

Q ss_pred             cccchhhhhhh-------hcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhh
Q 021611          103 FIPSVSGIWDA-------LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus       103 ~~~~a~~~~~~-------ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~  175 (310)
                      ...+..++|.-       ++.  ++|+-|+++..+|.-+...|+|+.|.+.|+.++++||.+.-++.|||++++.-|||+
T Consensus        73 vlYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~  150 (297)
T COG4785          73 VLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK  150 (297)
T ss_pred             chhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence            44456666654       466  999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH-hcCCChhhHHH-HHHhhcCCCChHHHHHHhcCCC-C-
Q 021611          176 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE-VGRDPRPVMRE-AYNMFKGGGDPEKLVAAFSSGR-E-  251 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~-~~~d~~~~~~~-a~~l~~~~~~~e~al~~~~~~~-~-  251 (310)
                      -|.++|.+--+-||+||-...|.++...+ .++.+|...+.+ .....++.|+. +..++.+.-..+.+++.+.... + 
T Consensus       151 LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k-~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n  229 (297)
T COG4785         151 LAQDDLLAFYQDDPNDPFRSLWLYLNEQK-LDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDN  229 (297)
T ss_pred             hhHHHHHHHHhcCCCChHHHHHHHHHHhh-CCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence            99999999999999999888888875544 467888877654 33333344432 2334444445555555543211 1 


Q ss_pred             ----cchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          252 ----NEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       252 ----~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                          .-...++||+|..+..+|+.++|...|+-|+.++
T Consensus       230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence                1145678999999999999999999999999954

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=5.1e-14  Score=130.02  Aligned_cols=97  Identities=18%  Similarity=0.241  Sum_probs=91.0

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .+.+|.+.|+++|.  ++|+|+..|-+|+.+|.++|.++.|++|+.+||++||.++.+|-.+|++++-+|++++|++.|+
T Consensus        96 ~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk  173 (304)
T KOG0553|consen   96 DYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK  173 (304)
T ss_pred             hHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            56779999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhh
Q 021611          183 IDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      ++++++|++..  +|.+|..+
T Consensus       174 KaLeldP~Ne~--~K~nL~~A  192 (304)
T KOG0553|consen  174 KALELDPDNES--YKSNLKIA  192 (304)
T ss_pred             hhhccCCCcHH--HHHHHHHH
Confidence            99999999874  56666555

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.40  E-value=3.8e-13  Score=144.08  Aligned_cols=181  Identities=8%  Similarity=-0.045  Sum_probs=122.6

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+...+|...|.++..  ..|. ...++.+|.++...|++++|++.|+++++++|++...+..++..+..+|++++|+..
T Consensus       522 ~Gr~eeAi~~~rka~~--~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~  598 (987)
T PRK09782        522 VEDYATALAAWQKISL--HDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALND  598 (987)
T ss_pred             CCCHHHHHHHHHHHhc--cCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3346667777776654  4333 345778888888888888888888888888888777666666666666888888888


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYF  255 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~  255 (310)
                      |+++++++|+ +..+...+.+..++|++++|+..+.++   .|+...........+...|+.+++++.+..  ...|+..
T Consensus       599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            8888888885 443332233334778888888877663   333333332333344456777777776652  2355666


Q ss_pred             HhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          256 YASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      .+++.+|.++..+|++++|+.+|++|+++.
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            777788888888888888888888888854

>PLN02789 farnesyltranstransferase

Probab=99.38  E-value=7.1e-13  Score=126.00  Aligned_cols=197  Identities=10%  Similarity=-0.028  Sum_probs=148.4

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc-ccccchhhhhhccccCcchhhHHHhhccchhhhhhh--hhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF--EEGAE  179 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~--~eA~~  179 (310)
                      ..+.|..+++++|.  ++|+++.+|..||.++..+| +++++++.++++++.+|++..+|..||.++..+|+.  +++++
T Consensus        52 ~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~  129 (320)
T PLN02789         52 RSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE  129 (320)
T ss_pred             CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence            66788999999998  99999999999999999999 689999999999999999999999999999999874  78899


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh-cCCChh--hHHH-HHHhhcC--CCCh----HHHHHHhc--
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV-GRDPRP--VMRE-AYNMFKG--GGDP----EKLVAAFS--  247 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~-~~d~~~--~~~~-a~~l~~~--~~~~----e~al~~~~--  247 (310)
                      .++++++++|++.+++..+..+...+|+++++++.+.++ ..+++.  .+.. ...+...  .+..    ++.+....  
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a  209 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA  209 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence            999999999999885444444455789999999988774 234333  2222 2222211  1222    34444442  


Q ss_pred             CCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611          248 SGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL  303 (310)
Q Consensus       248 ~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~  303 (310)
                      ...+|+...++.++|.++..    +++..+|...+.+++..+  ..+...+.-|+.+++.
T Consensus       210 I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~  267 (320)
T PLN02789        210 ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence            23456667788888888877    466788999999988833  4566677777777764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.38  E-value=5.7e-14  Score=118.48  Aligned_cols=94  Identities=12%  Similarity=0.034  Sum_probs=88.3

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      .+.+...+|...|.+++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+
T Consensus        35 ~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi  112 (144)
T PRK15359         35 WQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR  112 (144)
T ss_pred             HHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            344456779999999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCcc
Q 021611          179 EQFRIDVAQNPNDTEE  194 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~  194 (310)
                      +.|+++++++|+++..
T Consensus       113 ~~~~~Al~~~p~~~~~  128 (144)
T PRK15359        113 EAFQTAIKMSYADASW  128 (144)
T ss_pred             HHHHHHHHhCCCChHH
Confidence            9999999999999873

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.37  E-value=9e-13  Score=114.41  Aligned_cols=180  Identities=11%  Similarity=0.035  Sum_probs=136.3

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...++...+.+++.  .+|+++.++..+|.++..+|++++|++.|+++++++|++..+++++|.++...|++++|++.|
T Consensus        45 ~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  122 (234)
T TIGR02521        45 GDLEVAKENLDKALE--HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF  122 (234)
T ss_pred             CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            356678888888888  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeeh--hhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcch
Q 021611          182 RIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEY  254 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~  254 (310)
                      +++++..+.......+..++  ....|++++|...+.++.   ++....+......+...++++++...+...  ..++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  202 (234)
T TIGR02521       123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT  202 (234)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99998643222222333333  347899999999887743   222222222233444578888877666421  12333


Q ss_pred             hHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          255 FYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ......++.++...|+.++|..+.+.+.+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       203 AESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            44455688899999999999998887665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.33  E-value=3.3e-12  Score=136.92  Aligned_cols=197  Identities=9%  Similarity=-0.025  Sum_probs=135.0

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      .+|...|.+++.  ..|++. .+..+|.++...|++++|+..|++++...|.. ..++..|.++...|++++|+..|+++
T Consensus       493 ~eAi~a~~~Al~--~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qA  568 (987)
T PRK09782        493 GVALYAWLQAEQ--RQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQA  568 (987)
T ss_pred             HHHHHHHHHHHH--hCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            346666666666  667543 35555666667888888888888877765553 45677788888888888888888888


Q ss_pred             hccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CCh-hhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhh
Q 021611          185 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPR-PVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLY  260 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~-~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~  260 (310)
                      ++++|++............+.|++++|+..+.++.. +|. ..+......+...|++++|+..+.  ....|+...++..
T Consensus       569 L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n  648 (987)
T PRK09782        569 EQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA  648 (987)
T ss_pred             HhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            888876653221111111234888888888776432 222 222233334555788888888775  3345666778888


Q ss_pred             hhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          261 AGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       261 lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      +|.++..+|++++|+.+|++|+++.  +.+.+++.++|.++..+|+.
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999999954  35678889999999988874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.33  E-value=2.2e-12  Score=135.65  Aligned_cols=204  Identities=9%  Similarity=0.031  Sum_probs=141.8

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+...+|...|.+++.  ++|+++.++..+|.++...|++++|+..++++++.+|++.. +..+|.++...|++++|+.
T Consensus        61 ~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~  137 (765)
T PRK10049         61 NLKQWQNSLTLWQKALS--LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR  137 (765)
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence            33456789999999998  99999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChHHHH----------------------------------------------H
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR----------------------------------------------N  213 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~----------------------------------------------~  213 (310)
                      .|+++++++|++++............+..++|+                                              +
T Consensus       138 ~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~  217 (765)
T PRK10049        138 AMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA  217 (765)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence            999999999998774333222222233334333                                              3


Q ss_pred             hHHHhc----CCCh--hhHHH-----HHHhhcCCCChHHHHHHhcCCC--C-cchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611          214 RFLEVG----RDPR--PVMRE-----AYNMFKGGGDPEKLVAAFSSGR--E-NEYFYASLYAGLFYESQKKADAAKLHIL  279 (310)
Q Consensus       214 ~l~~~~----~d~~--~~~~~-----a~~l~~~~~~~e~al~~~~~~~--~-~d~~~a~~~lG~~~~~~G~~d~A~~~~~  279 (310)
                      .+.++.    .+|.  +....     +..++ ..+++++|++.+....  . +.+.++..++|.+|..+|++++|+.+|+
T Consensus       218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~  296 (765)
T PRK10049        218 QYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT  296 (765)
T ss_pred             HHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            222211    1111  11111     11223 3466777777665322  1 1234455667888889999999999999


Q ss_pred             HhhcCCCCC--CChHHHHHHHHHhhcccCC
Q 021611          280 AACESPYGQ--RSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       280 kAl~~~~~~--~s~~~~~~la~~~~~~~~~  307 (310)
                      ++++.+...  .+.+....|+.++...|++
T Consensus       297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        297 ELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            988743221  1134455666667666654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.32  E-value=3.3e-13  Score=98.70  Aligned_cols=67  Identities=33%  Similarity=0.540  Sum_probs=65.6

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh-hhhhhhhhhhhhhccCC
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD-RFEEGAEQFRIDVAQNP  189 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg-~~~eA~~~f~~Al~l~P  189 (310)
                      ++..|+.+|.+++..|++++|+..|+++|+++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            58899999999999999999999999999999999999999999999999 89999999999999998

...

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.31  E-value=2.3e-12  Score=123.44  Aligned_cols=181  Identities=10%  Similarity=0.042  Sum_probs=138.6

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-----hHHHhhccchhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-----AYLWQRGLSLYYLDRFE  175 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-----~a~~~~G~a~~~lg~~~  175 (310)
                      .+....|...+.+++.  .+|.+..++..++.++...|++++|++.|+++++.+|...     ..+..+|.++...|+++
T Consensus       120 ~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        120 AGLLDRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             CCCHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence            3456678888888887  7899999999999999999999999999999999988753     25667899999999999


Q ss_pred             hhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChh---hHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611          176 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRP---VMREAYNMFKGGGDPEKLVAAFSSG--  249 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~---~~~~a~~l~~~~~~~e~al~~~~~~--  249 (310)
                      +|+..|+++++.+|++..++...+....+.|++++|...+.++.. ++..   .+..+...+...|+.+++.+.+...  
T Consensus       198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999998776433333334478999999998887543 2322   1222333455578888887776521  


Q ss_pred             CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          250 RENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      ..|+.. ....+|.++..+|++++|+..|+++++.
T Consensus       278 ~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        278 EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR  311 (389)
T ss_pred             hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            223332 3367899999999999999999999994

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.29  E-value=5.3e-12  Score=113.36  Aligned_cols=176  Identities=16%  Similarity=0.085  Sum_probs=120.9

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc-
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE-  194 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~-  194 (310)
                      .++..+..++.+|..++..|++++|+..|+++++.+|+++   .+++.+|.+++..|++++|+..|+++++..|+++.. 
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4556789999999999999999999999999999999875   688999999999999999999999999999998762 


Q ss_pred             --ceeeeehhhhh--------cChHHHHHhHHHhcC-CChhhH-HHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhh
Q 021611          195 --SIWCFLCEAQL--------YGVDEARNRFLEVGR-DPRPVM-REAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAG  262 (310)
Q Consensus       195 --~~~~~l~~a~l--------~~~~eA~~~l~~~~~-d~~~~~-~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG  262 (310)
                        +...+.+....        |++++|+..+.++.. .|.... ..+.....      ..        ........+.+|
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~------~~--------~~~~~~~~~~~a  173 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD------YL--------RNRLAGKELYVA  173 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH------HH--------HHHHHHHHHHHH
Confidence              22222233222        567788887776422 222110 01110000      00        000112234577


Q ss_pred             hhhhhccchhhHHHHHHHhhcCCC-CCCChHHHHHHHHHhhcccCCc
Q 021611          263 LFYESQKKADAAKLHILAACESPY-GQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       263 ~~~~~~G~~d~A~~~~~kAl~~~~-~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      .++..+|++++|+..|+++++... .....+.+..++.++...|++.
T Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence            778888888888888888887311 1223467778888888877764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.25  E-value=7.9e-12  Score=129.61  Aligned_cols=137  Identities=9%  Similarity=-0.010  Sum_probs=120.3

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      .-|.++++++.+|.+..++|+++||+..+++++++.|++..++.+++.++.+++++++|+..+++++..+|+++......
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999998866655


Q ss_pred             eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611          199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI  278 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~  278 (310)
                      +.++.++|++++|.+.+.++..                             ..++...++..+|.++...|+.++|...|
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~-----------------------------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~  211 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSR-----------------------------QHPEFENGYVGWAQSLTRRGALWRARDVL  211 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHh-----------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5566678888888877775311                             23455667788999999999999999999


Q ss_pred             HHhhcC
Q 021611          279 LAACES  284 (310)
Q Consensus       279 ~kAl~~  284 (310)
                      ++|++.
T Consensus       212 ~~a~~~  217 (694)
T PRK15179        212 QAGLDA  217 (694)
T ss_pred             HHHHHh
Confidence            999984

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.24  E-value=2.8e-12  Score=113.97  Aligned_cols=112  Identities=11%  Similarity=0.044  Sum_probs=99.7

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch-hhhhh--hhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL-YYLDR--FEEGAEQF  181 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~-~~lg~--~~eA~~~f  181 (310)
                      .++...+.+++.  .+|+++.+|+.+|.++...|++++|+..|++|++++|+++..+.++|.++ ...|+  +++|.+.+
T Consensus        56 ~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         56 EAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            456677778888  99999999999999999999999999999999999999999999999986 67788  59999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +++++++|+++.+....+....+.|++++|+..+.++
T Consensus       134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370        134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999986655555556899999999998874

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2.1e-11  Score=118.15  Aligned_cols=177  Identities=14%  Similarity=0.195  Sum_probs=139.7

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .-..|...|.+++.  +||+...+|.-+|.=|..+++-..|++.|++|++++|.+..+|+.+|.+|..++-..=|+-.|+
T Consensus       345 eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq  422 (559)
T KOG1155|consen  345 EHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ  422 (559)
T ss_pred             hHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence            34457777778887  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC--CC-hhhHHHHHHhhcCCCChHHHHHHhc--------CC
Q 021611          183 IDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR--DP-RPVMREAYNMFKGGGDPEKLVAAFS--------SG  249 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~--d~-~~~~~~a~~l~~~~~~~e~al~~~~--------~~  249 (310)
                      +|+++.|+|+.  .|..++.-  ++++.+||+.++.++-.  |. ...+..+..++...++.++|...+.        .+
T Consensus       423 kA~~~kPnDsR--lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg  500 (559)
T KOG1155|consen  423 KALELKPNDSR--LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG  500 (559)
T ss_pred             HHHhcCCCchH--HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence            99999999987  67666554  89999999999988432  22 1222223334554555666544432        11


Q ss_pred             -CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          250 -RENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       250 -~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                       ..++...+..+++.++...+++++|..+..+++.
T Consensus       501 ~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  501 EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence             2334667788899999999999999998888887

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.22  E-value=6.3e-12  Score=103.10  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=97.5

Q ss_pred             hhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN  188 (310)
Q Consensus       109 ~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~  188 (310)
                      ..+.+++.  ++|+++.+.+.+|..++..|++++|++.|+++++++|+++.+++.+|.++...|++++|+..|+++++++
T Consensus         4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34667887  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          189 PNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       189 P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      |+++..+.+.+.+....|++++|...+.++
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLA  111 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            998886555555566889999999888763

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.21  E-value=2.1e-11  Score=109.52  Aligned_cols=167  Identities=16%  Similarity=0.074  Sum_probs=122.7

Q ss_pred             hhcccchhhhhhhhcCCCCchhHH---HHHHHhhhhheeccccccchhhhhhccccCcchhh---HHHhhccchhhh---
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA---YLWQRGLSLYYL---  171 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~---~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~---a~~~~G~a~~~l---  171 (310)
                      .+.+.+|...+.+++.  .+|+++   .+++.+|.++...|++++|++.|+++++.+|+++.   +++.+|.+++..   
T Consensus        46 ~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~  123 (235)
T TIGR03302        46 SGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR  123 (235)
T ss_pred             cCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence            3456778888998888  888765   68999999999999999999999999999998876   789999999876   


Q ss_pred             -----hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHh
Q 021611          172 -----DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAF  246 (310)
Q Consensus       172 -----g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~  246 (310)
                           |++++|++.|+++++.+|++...  +..+  ..++.........         ....+. ++...|++++++..+
T Consensus       124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~a~--~~~~~~~~~~~~~---------~~~~a~-~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       124 VDRDQTAAREAFEAFQELIRRYPNSEYA--PDAK--KRMDYLRNRLAGK---------ELYVAR-FYLKRGAYVAAINRF  189 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHCCCChhH--HHHH--HHHHHHHHHHHHH---------HHHHHH-HHHHcCChHHHHHHH
Confidence                 99999999999999999987642  2111  1111111111000         011122 233467777776665


Q ss_pred             cCC----C-CcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          247 SSG----R-ENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       247 ~~~----~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ...    + .+....+++.+|.++..+|++++|..+++....
T Consensus       190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            421    1 344567888999999999999999998887765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=5.9e-11  Score=117.44  Aligned_cols=205  Identities=13%  Similarity=0.101  Sum_probs=152.7

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.|..++|.-++.+++.  .+|.++++|..+|.+....++-..||..+.+++++||++-.++..+|+.|.-.|.=.+|++
T Consensus       297 ~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             hcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            34467788888988998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCc-----------------------------------------cceeeeehhh--hhcChHHHHHhHH
Q 021611          180 QFRIDVAQNPNDTE-----------------------------------------ESIWCFLCEA--QLYGVDEARNRFL  216 (310)
Q Consensus       180 ~f~~Al~l~P~d~~-----------------------------------------~~~~~~l~~a--~l~~~~eA~~~l~  216 (310)
                      ++++=++..|....                                         +.+...|+..  ..+.++.|+++|.
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~  454 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE  454 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence            99987665543211                                         0011111111  2256777777776


Q ss_pred             HhcC---CChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC----
Q 021611          217 EVGR---DPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG----  287 (310)
Q Consensus       217 ~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~----  287 (310)
                      .+..   .....|.++.+-+..+.+.++|+..+.  ..++|....++|++|..+..+|.|++|..||-.||..+..    
T Consensus       455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~  534 (579)
T KOG1125|consen  455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH  534 (579)
T ss_pred             HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence            6433   233345566666666677778877776  3456777888888999888899999999999988875332    


Q ss_pred             CC----ChHHHHHHHHHhhcccC
Q 021611          288 QR----SDDYMAALAKVHSLCRN  306 (310)
Q Consensus       288 ~~----s~~~~~~la~~~~~~~~  306 (310)
                      ++    +...|-+|..++..+++
T Consensus       535 ~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  535 NKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             ccCCcchHHHHHHHHHHHHHcCC
Confidence            22    24566677777666553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.19  E-value=3.6e-12  Score=122.90  Aligned_cols=101  Identities=17%  Similarity=0.277  Sum_probs=93.3

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .+.+|...|++++.  ++|+++.+|++||.++..+|++++|+.++++|++++|+++.+|+.+|.+++.+|+|++|+..|+
T Consensus        17 ~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (356)
T PLN03088         17 DFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE   94 (356)
T ss_pred             CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            56679999999998  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQL  205 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l  205 (310)
                      ++++++|+++....|...|..++
T Consensus        95 ~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         95 KGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999998767665554433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.18  E-value=1.4e-11  Score=105.02  Aligned_cols=101  Identities=13%  Similarity=0.099  Sum_probs=95.9

Q ss_pred             CCc-hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611          118 NNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI  196 (310)
Q Consensus       118 ~~~-P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~  196 (310)
                      +++ |+.-+..|.+|..+...|++++|...|+....+||.+..+|+++|.++..+|+|++|++.|.+|+.++|+|++++.
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            478 8999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeeehhhhhcChHHHHHhHHHh
Q 021611          197 WCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       197 ~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +.+.|...+|+.++|++.|..+
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            8888888999999999998864

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.17  E-value=1e-10  Score=123.06  Aligned_cols=113  Identities=12%  Similarity=0.044  Sum_probs=100.3

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|..+|.+++.  .+|..+.++..+|.++..+|++++|++.|+++++++|+++.++..+|.++...|++++|+..++
T Consensus        30 ~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~  107 (765)
T PRK10049         30 QDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK  107 (765)
T ss_pred             CHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45678899998887  7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      ++++.+|+++. +...+.+....|+.++|+..+.++
T Consensus       108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a  142 (765)
T PRK10049        108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA  142 (765)
T ss_pred             HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999987 443333444789999999988763

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.15  E-value=9.8e-11  Score=104.97  Aligned_cols=181  Identities=17%  Similarity=0.104  Sum_probs=133.6

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+....|....++++.  .+|+++.+|..|+.+|..+|+.+-|-+.|++|+.++|++...++|-|.-+...|+|++|..
T Consensus        47 ~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q  124 (250)
T COG3063          47 QQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQ  124 (250)
T ss_pred             HCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHH
Confidence            33455567888889998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCc---cceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC-CCCc
Q 021611          180 QFRIDVAQNPNDTE---ESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS-GREN  252 (310)
Q Consensus       180 ~f~~Al~l~P~d~~---~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~-~~~~  252 (310)
                      .|++|+. +|...+   .+-+.++|..+.|+.+.|...+.+.   +++..+.......+....|++-.|...++. ....
T Consensus       125 ~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~  203 (250)
T COG3063         125 QFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG  203 (250)
T ss_pred             HHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence            9999995 565543   3345566777899999999988763   333333322222233335566666555442 1111


Q ss_pred             chhHhhhhhhh-hhhhccchhhHHHHHHHhhc
Q 021611          253 EYFYASLYAGL-FYESQKKADAAKLHILAACE  283 (310)
Q Consensus       253 d~~~a~~~lG~-~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ...-..++||. +-...|+-+.|-++=.+-.+
T Consensus       204 ~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         204 GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            12223456776 66778888888777666655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=3.6e-11  Score=111.25  Aligned_cols=117  Identities=22%  Similarity=0.270  Sum_probs=95.7

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      ++-.-.-|.-+...++|++|+..|++||+++|+++.+|-+|+-+|.++|.|+.|+++.+.|+++||++..          
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk----------  150 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK----------  150 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH----------
Confidence            5667788999999999999999999999999999999999999999999999999999999999995432          


Q ss_pred             hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          204 QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       204 ~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                                                                           ++.-+|++|..+|++++|++.|++||+
T Consensus       151 -----------------------------------------------------ay~RLG~A~~~~gk~~~A~~aykKaLe  177 (304)
T KOG0553|consen  151 -----------------------------------------------------AYGRLGLAYLALGKYEEAIEAYKKALE  177 (304)
T ss_pred             -----------------------------------------------------HHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence                                                                 222477777778888888888888888


Q ss_pred             CCCCCCChHHHHHHHHHhhccc
Q 021611          284 SPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       284 ~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      +...  ++.|.-+|..+.-..+
T Consensus       178 ldP~--Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  178 LDPD--NESYKSNLKIAEQKLN  197 (304)
T ss_pred             cCCC--cHHHHHHHHHHHHHhc
Confidence            5543  4466667765554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=9e-11  Score=113.81  Aligned_cols=180  Identities=17%  Similarity=0.096  Sum_probs=137.5

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--  203 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--  203 (310)
                      ..---|+-|...++++.|+..|.+|++|||+...+|.-+|.=+..+.+-..|++.|++|++++|.|-.  +|+++|.+  
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR--AWYGLGQaYe  409 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR--AWYGLGQAYE  409 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH--HHhhhhHHHH
Confidence            33345677778899999999999999999999999999999999999999999999999999998876  79999887  


Q ss_pred             hhcChHHHHHhHHHhcC----CChhhHHHHHHhhcCCCChHHHHHHhcCCCCcc--hhHhhhhhhhhhhhccchhhHHHH
Q 021611          204 QLYGVDEARNRFLEVGR----DPRPVMREAYNMFKGGGDPEKLVAAFSSGRENE--YFYASLYAGLFYESQKKADAAKLH  277 (310)
Q Consensus       204 ~l~~~~eA~~~l~~~~~----d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d--~~~a~~~lG~~~~~~G~~d~A~~~  277 (310)
                      -++.+.-|+-.++++..    |++- +..+..-+...++.++|++++.......  ...+...+|.+|+.+++.++|-.+
T Consensus       410 im~Mh~YaLyYfqkA~~~kPnDsRl-w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~  488 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELKPNDSRL-WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY  488 (559)
T ss_pred             HhcchHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence            57778888888877532    3332 2223334556778899999987433222  235677799999999999999999


Q ss_pred             HHHhhcC--CCCCCCh---HHHHHHHHHhhcccCCc
Q 021611          278 ILAACES--PYGQRSD---DYMAALAKVHSLCRNWS  308 (310)
Q Consensus       278 ~~kAl~~--~~~~~s~---~~~~~la~~~~~~~~~~  308 (310)
                      |.+.++.  ..|..++   ....=||....++++|.
T Consensus       489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~  524 (559)
T KOG1155|consen  489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD  524 (559)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence            9999882  2233222   22223688888888874

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.11  E-value=1.6e-11  Score=88.83  Aligned_cols=65  Identities=23%  Similarity=0.453  Sum_probs=60.9

Q ss_pred             HHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       128 ~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      +.+|..++..|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.11  E-value=5.3e-11  Score=105.74  Aligned_cols=122  Identities=9%  Similarity=-0.037  Sum_probs=94.6

Q ss_pred             eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh-hhhcC--hHHHH
Q 021611          136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE-AQLYG--VDEAR  212 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~-a~l~~--~~eA~  212 (310)
                      ..++.++++..+.++++.+|++..+|..+|.++...|++++|+..|+++++++|+++..+...+.+. ...|+  .++|.
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            3678899999999999999999999999999999999999999999999999999987433222111 12233  24444


Q ss_pred             HhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611          213 NRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPY  286 (310)
Q Consensus       213 ~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~  286 (310)
                      ..+.++                             ...+|+...+++.+|..+..+|++++|+.+|++++++..
T Consensus       131 ~~l~~a-----------------------------l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        131 EMIDKA-----------------------------LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS  175 (198)
T ss_pred             HHHHHH-----------------------------HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            433321                             113345566788999999999999999999999999543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.06  E-value=4.5e-10  Score=106.44  Aligned_cols=187  Identities=11%  Similarity=-0.031  Sum_probs=104.8

Q ss_pred             chhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI  196 (310)
Q Consensus       120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~  196 (310)
                      +|+++.+|..+|..+...|++++|...+.++.+..|.+   ....+.+|.++...|++++|++.++++++.+|++.....
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            67777777777777777777777777777777776643   344556777777777777777777777777777664322


Q ss_pred             eeeehhhh----hcChHHHHHhHHHhcC-CChhhHH--HHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhh
Q 021611          197 WCFLCEAQ----LYGVDEARNRFLEVGR-DPRPVMR--EAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYES  267 (310)
Q Consensus       197 ~~~l~~a~----l~~~~eA~~~l~~~~~-d~~~~~~--~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~  267 (310)
                      . .+....    .+...++...+....+ .+.....  .....+...|++++++..+..  ...|+...++..+|.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            1 111111    2223333333322212 1211111  111223345666666655542  2334445556667777777


Q ss_pred             ccchhhHHHHHHHhhcCCCCC--CChHHHHHHHHHhhcccCC
Q 021611          268 QKKADAAKLHILAACESPYGQ--RSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       268 ~G~~d~A~~~~~kAl~~~~~~--~s~~~~~~la~~~~~~~~~  307 (310)
                      +|++++|+.+++++++.....  .....++.++..+..+|++
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            777777777777777632111  1112345667777777765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.05  E-value=1.3e-10  Score=107.50  Aligned_cols=195  Identities=16%  Similarity=0.109  Sum_probs=76.6

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      .+.+...|.+++.  .+|.++..+..++.. ...|++++|+..+.++.+..+ ++..+.....++...|+++++.+.+++
T Consensus        60 ~~~A~~ay~~l~~--~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~  135 (280)
T PF13429_consen   60 YDEAIEAYEKLLA--SDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK  135 (280)
T ss_dssp             --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred             ccccccccccccc--ccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence            4456666666666  666666666666666 577777777777777776554 344555556666777777777777777


Q ss_pred             hhccC--CCCCccceeeeehhh--hhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhc---CCCCcc
Q 021611          184 DVAQN--PNDTEESIWCFLCEA--QLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFS---SGRENE  253 (310)
Q Consensus       184 Al~l~--P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~---~~~~~d  253 (310)
                      +....  |+++  .+|..++..  +.|+.++|+..+.++   .|+..........++...|+.+++.+.+.   ... ++
T Consensus       136 ~~~~~~~~~~~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~  212 (280)
T PF13429_consen  136 LEELPAAPDSA--RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD  212 (280)
T ss_dssp             HHH-T---T-H--HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred             HHhccCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence            66544  3333  244444433  567788888777653   34333333223334445566666444332   111 12


Q ss_pred             hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          254 YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      ....+..+|.++..+|++++|+.+|+++++..  +.++..+..+|.++...|+.
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHhcccccccccccccccccccc--cccccccccccccccccccc
Confidence            22234468889999999999999999999833  45677778889999888864

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.04  E-value=7.8e-10  Score=108.00  Aligned_cols=198  Identities=13%  Similarity=0.042  Sum_probs=138.6

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHH-HHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVA-IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~-~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      ....+...+.++..  .+|++..+. ...+.++...|++++|++.++++++.+|+++.++..++.++...|+|++|++.+
T Consensus       133 ~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l  210 (398)
T PRK10747        133 DEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL  210 (398)
T ss_pred             CHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45667788888877  788875443 345899999999999999999999999999999999999999999999999777


Q ss_pred             hhhhccCCCCCc------------------------------------------cceeeeehhhhhcChHHHHHhHHHhc
Q 021611          182 RIDVAQNPNDTE------------------------------------------ESIWCFLCEAQLYGVDEARNRFLEVG  219 (310)
Q Consensus       182 ~~Al~l~P~d~~------------------------------------------~~~~~~l~~a~l~~~~eA~~~l~~~~  219 (310)
                      .+..+..+.++.                                          ...-+.......|+.++|...+.+..
T Consensus       211 ~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l  290 (398)
T PRK10747        211 PSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL  290 (398)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            776655443221                                          11111111124566777777666533


Q ss_pred             CC-ChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHH
Q 021611          220 RD-PRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAA  296 (310)
Q Consensus       220 ~d-~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~  296 (310)
                      +. +.+....++.... .++++++++.++  ....|+....++.+|.++..+|++++|+++|+++++..  +.+.+ ...
T Consensus       291 ~~~~~~~l~~l~~~l~-~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~-~~~  366 (398)
T PRK10747        291 KRQYDERLVLLIPRLK-TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYD-YAW  366 (398)
T ss_pred             hcCCCHHHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH-HHH
Confidence            32 2222222333332 366777766664  23456666778889999999999999999999999954  23333 357


Q ss_pred             HHHHhhcccC
Q 021611          297 LAKVHSLCRN  306 (310)
Q Consensus       297 la~~~~~~~~  306 (310)
                      ++.++.++|+
T Consensus       367 La~~~~~~g~  376 (398)
T PRK10747        367 LADALDRLHK  376 (398)
T ss_pred             HHHHHHHcCC
Confidence            8888888775

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4.8e-10  Score=110.87  Aligned_cols=73  Identities=16%  Similarity=0.107  Sum_probs=39.9

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d  191 (310)
                      ..|+.+..|+..|.-|...|++++|...|.|+..+||.+..+|...|.++...|+.|+|+.+|.+|-++-|..
T Consensus       307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence            5555555555555555555555555555555555555555555555555555555555555555554444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.02  E-value=5.2e-11  Score=110.17  Aligned_cols=174  Identities=16%  Similarity=0.099  Sum_probs=79.0

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccC--cchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--PRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      ..+|..+..+...  . +.++..+.....++...|+++++.+.++++.+..  |.++..|..+|.++.+.|++++|+++|
T Consensus        93 ~~~A~~~~~~~~~--~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   93 PEEALKLAEKAYE--R-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             ccccccccccccc--c-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3445444444332  2 2345666666777778888888888888876655  566777778888888888888888888


Q ss_pred             hhhhccCCCCCccceeeeehh--hhhcChHHHHHhH---HHhc-CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc
Q 021611          182 RIDVAQNPNDTEESIWCFLCE--AQLYGVDEARNRF---LEVG-RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE  253 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l---~~~~-~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d  253 (310)
                      +++++++|+|+..  +..++.  ...|+.+++...+   .+.. .++.-....+. .+...|++++|+..+...  .+|+
T Consensus       170 ~~al~~~P~~~~~--~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~-~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  170 RKALELDPDDPDA--RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA-AYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHH-TT-HHH--HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH-HHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHcCCCCHHH--HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH-Hhcccccccccccccccccccccc
Confidence            8888888887763  333332  2456666644443   3332 23332222222 223346777777777532  3455


Q ss_pred             hhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          254 YFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      +.......|.++...|+.++|.+.++++.+
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            666677899999999999999999999987

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=6.2e-10  Score=110.09  Aligned_cols=179  Identities=13%  Similarity=0.060  Sum_probs=146.4

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      .++|...+.++..  +||....+|...|+.+.-.|..++|+.+|.+|-++-|+.....+..|.=+.+++.++-|...|.+
T Consensus       328 ~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~  405 (611)
T KOG1173|consen  328 YSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ  405 (611)
T ss_pred             cHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence            4567777888887  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhc-------CC---ChhhHHHHHHhhcCCCChHHHHHHhcC--C
Q 021611          184 DVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVG-------RD---PRPVMREAYNMFKGGGDPEKLVAAFSS--G  249 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~-------~d---~~~~~~~a~~l~~~~~~~e~al~~~~~--~  249 (310)
                      |+.+.|+||-.  ...++-.  ..+.+.+|...|+.+.       +.   ..|.+..+...+...+.+++|+..+..  .
T Consensus       406 A~ai~P~Dplv--~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  406 ALAIAPSDPLV--LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             HHhcCCCcchh--hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999853  3333332  5677899988876632       11   123344455556667788888887763  3


Q ss_pred             CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611          250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPY  286 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~  286 (310)
                      ..+.....|-.+|++|.-+|+++.|+++|.+|+.+..
T Consensus       484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            4566677788899999999999999999999999654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.01  E-value=1.2e-10  Score=120.78  Aligned_cols=116  Identities=11%  Similarity=-0.029  Sum_probs=106.7

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+..+++...|..+++  +.|++..++.++++++.+++++++|+..++++++.+|++..+++.+|.++..+|++++|++.
T Consensus        99 ~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~  176 (694)
T PRK15179         99 AHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC  176 (694)
T ss_pred             cCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence            3467889999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      |+++++.+|+++.++.+++.++...|+.++|...+.++
T Consensus       177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999988886665555555789999999998875

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.01  E-value=6.8e-11  Score=100.86  Aligned_cols=89  Identities=10%  Similarity=0.023  Sum_probs=82.5

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +-+.+|..+|..+..  ++|.++..|+++|.++..+|+|++|++.|.+|+.++|+++.++++.|.+++.+|+.++|.+.|
T Consensus        49 G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF  126 (157)
T PRK15363         49 KEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKAL  126 (157)
T ss_pred             CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence            356779899988887  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCC
Q 021611          182 RIDVAQNPNDT  192 (310)
Q Consensus       182 ~~Al~l~P~d~  192 (310)
                      +.++...-..+
T Consensus       127 ~~Ai~~~~~~~  137 (157)
T PRK15363        127 KAVVRICGEVS  137 (157)
T ss_pred             HHHHHHhccCh
Confidence            99999874333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.98  E-value=1.1e-10  Score=95.67  Aligned_cols=89  Identities=10%  Similarity=0.095  Sum_probs=84.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+.+++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++..++.+|.++...|++++|+..|+
T Consensus        32 ~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  109 (135)
T TIGR02552        32 RYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD  109 (135)
T ss_pred             cHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45678888988888  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCc
Q 021611          183 IDVAQNPNDTE  193 (310)
Q Consensus       183 ~Al~l~P~d~~  193 (310)
                      ++++++|++..
T Consensus       110 ~al~~~p~~~~  120 (135)
T TIGR02552       110 LAIEICGENPE  120 (135)
T ss_pred             HHHHhccccch
Confidence            99999998865

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=2.5e-09  Score=101.86  Aligned_cols=181  Identities=12%  Similarity=-0.009  Sum_probs=129.4

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh-hhhhhhhhhhhhhccCCCCCcccee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD-RFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg-~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      ..|+..+++-.+-.++...+++++|+..++++|+++|++..+|..||.++..+| +++++++.++++++.+|++..+  |
T Consensus        32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa--W  109 (320)
T PLN02789         32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI--W  109 (320)
T ss_pred             eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH--h
Confidence            566777777666666788899999999999999999999999999999999999 6899999999999999999874  5


Q ss_pred             eeeh--hhhhcCh--HHHHHhHHHh-cCCChh--hHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhc
Q 021611          198 CFLC--EAQLYGV--DEARNRFLEV-GRDPRP--VMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQ  268 (310)
Q Consensus       198 ~~l~--~a~l~~~--~eA~~~l~~~-~~d~~~--~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~  268 (310)
                      .+.+  ..++++.  ++++..+.++ ..+++.  .+......+...++++++++.+..  ..++....++.++|.+....
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            5443  3356652  5555655442 234443  333222234445678888877753  23455677888899887665


Q ss_pred             ---cch----hhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611          269 ---KKA----DAAKLHILAACESPYGQRSDDYMAALAKVHSL  303 (310)
Q Consensus       269 ---G~~----d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~  303 (310)
                         |..    ++++.+..++|++...  +...|..++-++..
T Consensus       190 ~~l~~~~~~~e~el~y~~~aI~~~P~--N~SaW~Yl~~ll~~  229 (320)
T PLN02789        190 PLLGGLEAMRDSELKYTIDAILANPR--NESPWRYLRGLFKD  229 (320)
T ss_pred             cccccccccHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHhc
Confidence               333    5788888899996543  33566666665554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.96  E-value=1.5e-09  Score=98.86  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=55.3

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      -+|.+...+...|...++.|+|.+|+..|.|+.+++|+++.+|..+|.+|-+.||+++|...|.+++++.|+++.+..+.
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl  174 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL  174 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence            34555555555666666666666666666666666666666666666666666666666666666666666655532222


Q ss_pred             eehhhhhcChHHHHHhHHH
Q 021611          199 FLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~  217 (310)
                      ++...-.|+.+.|...+.+
T Consensus       175 gms~~L~gd~~~A~~lll~  193 (257)
T COG5010         175 GMSLLLRGDLEDAETLLLP  193 (257)
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            2222233445555444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.6e-10  Score=113.61  Aligned_cols=100  Identities=16%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.++.|...|+++|.  .+|+|+..|.+|+.+|..+|.+.+|+.|.+++|+++|++..+|...|.++..+.+|++|++.
T Consensus       371 ~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea  448 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA  448 (539)
T ss_pred             ccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356677777777776  77777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhhhhccCCCCCccceeeeehh
Q 021611          181 FRIDVAQNPNDTEESIWCFLCE  202 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~  202 (310)
                      |+++++.||++.+..-|+..|.
T Consensus       449 y~eale~dp~~~e~~~~~~rc~  470 (539)
T KOG0548|consen  449 YQEALELDPSNAEAIDGYRRCV  470 (539)
T ss_pred             HHHHHhcCchhHHHHHHHHHHH
Confidence            7777777777766444443333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.95  E-value=1.2e-09  Score=113.37  Aligned_cols=197  Identities=12%  Similarity=0.100  Sum_probs=140.9

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..|...|...+.  .+|+|..+++.++.+.+..|+|-+|+..|.+++.++|.. +.....+|.++..+|+-+.|+..|.+
T Consensus       147 ~~A~a~F~~Vl~--~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r  224 (1018)
T KOG2002|consen  147 DDADAQFHFVLK--QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER  224 (1018)
T ss_pred             HHHHHHHHHHHh--hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence            346666777777  999999999999999999999999999999999999987 67888999999999999999999999


Q ss_pred             hhccCCCCCccceeeeehhhhh-----cChHHHHHhHHHh---cC-CChhhHHHHHHhhcCCCChHHHHHHhc----CC-
Q 021611          184 DVAQNPNDTEESIWCFLCEAQL-----YGVDEARNRFLEV---GR-DPRPVMREAYNMFKGGGDPEKLVAAFS----SG-  249 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a~l-----~~~~eA~~~l~~~---~~-d~~~~~~~a~~l~~~~~~~e~al~~~~----~~-  249 (310)
                      ++++||.+..+  ..+|+...+     ..+..+...+.++   .+ +|...+ .+..+|--.++++.+.....    .. 
T Consensus       225 alqLdp~~v~a--lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~-~LAn~fyfK~dy~~v~~la~~ai~~t~  301 (1018)
T KOG2002|consen  225 ALQLDPTCVSA--LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALN-HLANHFYFKKDYERVWHLAEHAIKNTE  301 (1018)
T ss_pred             HHhcChhhHHH--HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHH-HHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence            99999987763  344444422     2234444444432   22 343333 23233434567777655443    11 


Q ss_pred             CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      ..+-.....|++|..|..+|++++|..+|-++++...+.. .--.++||.+++..|..
T Consensus       302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-~l~~~GlgQm~i~~~dl  358 (1018)
T KOG2002|consen  302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-VLPLVGLGQMYIKRGDL  358 (1018)
T ss_pred             hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-cccccchhHHHHHhchH
Confidence            1222445677899999999999999999999998543321 12234778887777653

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.89  E-value=7.3e-09  Score=94.36  Aligned_cols=196  Identities=19%  Similarity=0.152  Sum_probs=147.5

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      +...|-+...  .+|++..+ .++...+...|+-+.++....++..-+|.+...+...|+.++..|+|.+|+..|+++.+
T Consensus        52 a~~al~~~~~--~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          52 AAAALGAAVL--RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             HHHHHHHHHh--cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            3344444555  89999999 99999999999999999999999999999988888899999999999999999999999


Q ss_pred             cCCCCCccceeeeehhhhhcChHHHHHhHHHh---cC-CChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhh
Q 021611          187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GR-DPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLY  260 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~-d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~  260 (310)
                      ++|+|.+.+.-.+.++.++|+.++|+..+.++   .+ +|.+..+.++.++. .|+.++|.+.+..  ...+......-+
T Consensus       129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence            99999985444444455999999999987663   22 45554445554443 6788888877752  122223333447


Q ss_pred             hhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCcC
Q 021611          261 AGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSS  309 (310)
Q Consensus       261 lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~~  309 (310)
                      +.++.-.+|++++|+..-.+=+...  +. .+...-|..+.-+.+.|..
T Consensus       208 LAl~~~~~g~~~~A~~i~~~e~~~~--~~-~~~~~~l~~~~~~~~~~~~  253 (257)
T COG5010         208 LALVVGLQGDFREAEDIAVQELLSE--QA-ANNVAALRAAASQSGAWTQ  253 (257)
T ss_pred             HHHHHhhcCChHHHHhhccccccch--hH-hhHHHHHHHhhcccchhHH
Confidence            8888889999999999888777632  22 2344466777777777753

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.87  E-value=6.1e-10  Score=108.84  Aligned_cols=70  Identities=23%  Similarity=0.433  Sum_probs=67.4

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH---HHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY---LWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a---~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      .-+|+++.+|+++|.+|+.+|+|++|++.|++||+++|++..+   |+++|.+|..+|++++|++++++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999999854   999999999999999999999999998

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.86  E-value=1.1e-08  Score=108.29  Aligned_cols=183  Identities=9%  Similarity=-0.031  Sum_probs=127.8

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      -..|+.+...+..+.+..+.|++++|++.|+++++.+|+++.+...+..++...|++++|+..+++++  +|++......
T Consensus        28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~l  105 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGL  105 (822)
T ss_pred             ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHH
Confidence            37888999999999999999999999999999999999986555578888888899999999999999  5554443333


Q ss_pred             eeeh--hhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611          198 CFLC--EAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK  270 (310)
Q Consensus       198 ~~l~--~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~  270 (310)
                      ..++  ....|++++|++.+.++.   |+....+......+...++.++|+..+...  ..++... ...++.++..+++
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~  184 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRATDR  184 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhcch
Confidence            3222  235688999999887743   332233322234455667888888877632  2333222 1334555555777


Q ss_pred             hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      ..+|+..|+++++..  +.+.+++..+..++...|
T Consensus       185 ~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        185 NYDALQASSEAVRLA--PTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence            777999999999954  345577777666655544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.85  E-value=7e-09  Score=107.10  Aligned_cols=48  Identities=13%  Similarity=-0.110  Sum_probs=41.7

Q ss_pred             hhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          257 ASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       257 a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      .|+.+|.||..+|.+++|+..|.+++.+..  ...|....|+.++.++|+
T Consensus       451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p--~~~D~Ri~Lasl~~~~g~  498 (895)
T KOG2076|consen  451 VWYKLARCYMELGEYEEAIEFYEKVLILAP--DNLDARITLASLYQQLGN  498 (895)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CchhhhhhHHHHHHhcCC
Confidence            455699999999999999999999999664  466899999999999886

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.82  E-value=1.2e-09  Score=105.38  Aligned_cols=92  Identities=16%  Similarity=0.155  Sum_probs=84.2

Q ss_pred             HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc
Q 021611          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  206 (310)
Q Consensus       127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~  206 (310)
                      +...|..++..|+|++|++.|++||+++|+++.+++++|.++..+|++++|+.+++++++++|+++.++..++.+..++|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999999999999999999999999999999999999999999887666666666899


Q ss_pred             ChHHHHHhHHHh
Q 021611          207 GVDEARNRFLEV  218 (310)
Q Consensus       207 ~~~eA~~~l~~~  218 (310)
                      ++++|+..+.++
T Consensus        85 ~~~eA~~~~~~a   96 (356)
T PLN03088         85 EYQTAKAALEKG   96 (356)
T ss_pred             CHHHHHHHHHHH
Confidence            999999988763

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=6.1e-09  Score=100.05  Aligned_cols=136  Identities=17%  Similarity=0.237  Sum_probs=88.7

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh------------HHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA------------YLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~------------a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      +++.+.++.+.||.++...++.+.|+.+|+++++++|+...            .+-.+|.-.++.|+|.+|.++|..+|.
T Consensus       198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            67777777777777777777777777777777777775432            344667777777777777777777777


Q ss_pred             cCCCCCccceeee----ehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhh
Q 021611          187 QNPNDTEESIWCF----LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLY  260 (310)
Q Consensus       187 l~P~d~~~~~~~~----l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~  260 (310)
                      ++|++....+..+    ++..++|+..+|                               +..+...  .++..-.++..
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~ea-------------------------------isdc~~Al~iD~syikall~  326 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREA-------------------------------ISDCNEALKIDSSYIKALLR  326 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhh-------------------------------hhhhhhhhhcCHHHHHHHHH
Confidence            7776654322221    111234444444                               4433322  22334445666


Q ss_pred             hhhhhhhccchhhHHHHHHHhhcCC
Q 021611          261 AGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       261 lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      .|.++..++++++|.+.|++|+++.
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8999999999999999999999954

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=2.2e-09  Score=106.47  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=99.2

Q ss_pred             cccchhhhhhhhcCCCCch--hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P--~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.+...+|-.+-.  .+|  .+|+++..+|.+|...|+|+.|+.+|+.||+.+|++...|+.+|-++.--.+.+|||..
T Consensus       409 ~l~~i~~~fLeaa~--~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsA  486 (579)
T KOG1125|consen  409 HLAHIQELFLEAAR--QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISA  486 (579)
T ss_pred             HHHHHHHHHHHHHH--hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHH
Confidence            44456666766655  677  78999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      |++|+++.|++..+.++.+.+...+|.++||...++.+
T Consensus       487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999886555555555889999999988763

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.80  E-value=2.4e-09  Score=78.28  Aligned_cols=92  Identities=22%  Similarity=0.370  Sum_probs=72.5

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  205 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l  205 (310)
                      +++.+|.++...|++++|+..|+++++..|+++.+++.+|.++...|++++|++.|++++++.|.+.........+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57888888889999999999999999999988888888999999999999999999999998888764322222233356


Q ss_pred             cChHHHHHhHHH
Q 021611          206 YGVDEARNRFLE  217 (310)
Q Consensus       206 ~~~~eA~~~l~~  217 (310)
                      |++++|...+.+
T Consensus        82 ~~~~~a~~~~~~   93 (100)
T cd00189          82 GKYEEALEAYEK   93 (100)
T ss_pred             HhHHHHHHHHHH
Confidence            677777766655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=2.8e-08  Score=93.42  Aligned_cols=182  Identities=10%  Similarity=0.055  Sum_probs=141.6

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC  201 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~  201 (310)
                      ..++.+..+..+|.+...++.|+..|...+.-.|.+.......+.++..++++++|++.|+.+++++|.+.++.+..+-+
T Consensus       254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999987777666


Q ss_pred             hhhhcChHHHHHhHHHhcC----CChhhHHHHH-HhhcCCCChHHHHHHh----cCCC-CcchhHhhhhhhhhhhhccch
Q 021611          202 EAQLYGVDEARNRFLEVGR----DPRPVMREAY-NMFKGGGDPEKLVAAF----SSGR-ENEYFYASLYAGLFYESQKKA  271 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~~~----d~~~~~~~a~-~l~~~~~~~e~al~~~----~~~~-~~d~~~a~~~lG~~~~~~G~~  271 (310)
                      ...-++++-|...+.++.+    .|........ -++.++  ++=++..+    .... +......||++|.+....|++
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ--~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~  411 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ--IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF  411 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc--hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence            7778889999998777533    2332222222 234433  33333332    2222 333455788999999999999


Q ss_pred             hhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          272 DAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       272 d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      ..|.++|+-|+.++.  ...+.+.|||.+..+-|+.
T Consensus       412 nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  412 NLAKRCFRLALTSDA--QHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHHHHHHhccCc--chHHHHHhHHHHHhhcCch
Confidence            999999999999543  3347889999998888764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.76  E-value=1.1e-08  Score=96.94  Aligned_cols=149  Identities=14%  Similarity=0.058  Sum_probs=71.4

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhcc----ccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI----ELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl----~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      +++..++.+++.  .+|++..++.. +..++..|++.++.....+++    ..+|+...++..+|.++...|++++|++.
T Consensus        60 ~~A~~~~~~~l~--~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  136 (355)
T cd05804          60 PKALALLEQLLD--DYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEA  136 (355)
T ss_pred             HHHHHHHHHHHH--HCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344455555554  55555554443 333333333333333333322    34444444444555555555555555555


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcch--hHhh
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEY--FYAS  258 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~--~~a~  258 (310)
                      ++++++++|+++..+.....+..+.|++++|+..+.+..+                           ..+....  ...+
T Consensus       137 ~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~---------------------------~~~~~~~~~~~~~  189 (355)
T cd05804         137 ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD---------------------------TWDCSSMLRGHNW  189 (355)
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh---------------------------ccCCCcchhHHHH
Confidence            5555555555543211111111234444444444433111                           0010111  2234


Q ss_pred             hhhhhhhhhccchhhHHHHHHHhhc
Q 021611          259 LYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       259 ~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ..+|.++..+|++++|+..|++++.
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            4578888888888888888888875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=98.75  E-value=1.8e-08  Score=98.65  Aligned_cols=197  Identities=15%  Similarity=0.112  Sum_probs=105.6

Q ss_pred             ccchhhhhhhhcCCCCchhHH-HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREA-VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~-~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+...+.++..  ..|++. .+...++.+++..|++++|++.+++.++..|+++.++...|.++...|++++|++.+.
T Consensus       134 ~~~A~~~l~~a~~--~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~  211 (409)
T TIGR00540       134 EARANQHLEEAAE--LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID  211 (409)
T ss_pred             HHHHHHHHHHHHH--hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4445555555544  444443 3444445555556666666666666666666665555556666666666665555555


Q ss_pred             hhhcc--------------------------------------CCC----CCccceeeeehhhhhcChHHHHHhHHHhc-
Q 021611          183 IDVAQ--------------------------------------NPN----DTEESIWCFLCEAQLYGVDEARNRFLEVG-  219 (310)
Q Consensus       183 ~Al~l--------------------------------------~P~----d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-  219 (310)
                      +..+.                                      .|+    ++.............|++++|.+.+.+.. 
T Consensus       212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       212 NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence            55543                                      331    22211111111124566777777665532 


Q ss_pred             --CCChhh---HHHHHHhhcCCCChHHHHHHhcC--CCCcchh--HhhhhhhhhhhhccchhhHHHHHHH--hhcCCCCC
Q 021611          220 --RDPRPV---MREAYNMFKGGGDPEKLVAAFSS--GRENEYF--YASLYAGLFYESQKKADAAKLHILA--ACESPYGQ  288 (310)
Q Consensus       220 --~d~~~~---~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~--~a~~~lG~~~~~~G~~d~A~~~~~k--Al~~~~~~  288 (310)
                        ++....   .-..+..+. .++.+++++.++.  ...|+..  .....+|.++..+|++++|+++|++  +++..  +
T Consensus       292 ~~pd~~~~~~~~l~~~~~l~-~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~--p  368 (409)
T TIGR00540       292 KLGDDRAISLPLCLPIPRLK-PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ--L  368 (409)
T ss_pred             hCCCcccchhHHHHHhhhcC-CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC--C
Confidence              222210   111121222 2455555555532  2233444  5566799999999999999999995  55532  3


Q ss_pred             CChHHHHHHHHHhhcccC
Q 021611          289 RSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       289 ~s~~~~~~la~~~~~~~~  306 (310)
                      .+.++ ..++.++.+.|+
T Consensus       369 ~~~~~-~~La~ll~~~g~  385 (409)
T TIGR00540       369 DANDL-AMAADAFDQAGD  385 (409)
T ss_pred             CHHHH-HHHHHHHHHcCC
Confidence            34444 488999888876

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.75  E-value=2.3e-09  Score=78.89  Aligned_cols=63  Identities=27%  Similarity=0.505  Sum_probs=60.3

Q ss_pred             hhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       131 G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      ..+++..+++++|++.++++++++|+++..++.+|.++..+|++++|+++|+++++.+|+++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            567899999999999999999999999999999999999999999999999999999998765

>TIGR00540 hemY_coli hemY protein

Probab=98.74  E-value=1.7e-08  Score=98.93  Aligned_cols=112  Identities=9%  Similarity=0.003  Sum_probs=90.9

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-hHHHhhccchhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-AYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      +..|.....++..  ..|+....+...|.+...+|++++|.+.+.++.+..|+.. ......+.++...|++++|.+.++
T Consensus       100 ~~~A~~~l~~~~~--~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~  177 (409)
T TIGR00540       100 YAKAEKLIAKNAD--HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD  177 (409)
T ss_pred             HHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4456665555555  7788888889999999999999999999999999999985 566667999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      +.++.+|+++...........+.|++++|.+.+.+
T Consensus       178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~  212 (409)
T TIGR00540       178 KLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN  212 (409)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999987544444444477888877776544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.74  E-value=2.5e-08  Score=94.25  Aligned_cols=186  Identities=12%  Similarity=0.121  Sum_probs=149.6

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      -+|.+..-++.+|..++..|.+.+|+..|..|++.||++..+++.||.+|+.+|+-.-|+.++.+.+++.|++.-+...+
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999998877778


Q ss_pred             eehhhhhcChHHHHHhHHHhcC-CChhh-HHHHH----------------HhhcCCCChHHHHHHhcCC--CCcchhHhh
Q 021611          199 FLCEAQLYGVDEARNRFLEVGR-DPRPV-MREAY----------------NMFKGGGDPEKLVAAFSSG--RENEYFYAS  258 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~~~-d~~~~-~~~a~----------------~l~~~~~~~e~al~~~~~~--~~~d~~~a~  258 (310)
                      +..+.++|.+++|.++|..+.+ +|+.. ..+++                .-.-+.|+...++..+...  ..+......
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~  192 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR  192 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence            7777889999999999988643 22210 00110                0112345666666555422  344445555


Q ss_pred             hhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          259 LYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       259 ~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      -+++.||...|+...|+..++.|-++..  .+-+.++.++.+++.-|+
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~Y~vgd  238 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLLYTVGD  238 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHHHhhhh
Confidence            5688999999999999999999999764  455888999999887765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.72  E-value=9.6e-09  Score=88.63  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             hhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611          113 ALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP  189 (310)
Q Consensus       113 ~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P  189 (310)
                      ..+....+|..+.+++.+|..+...|++++|+..|++++++.|+.   ..++.++|.++..+|++++|+..++++++++|
T Consensus        24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            334424566788899999999999999999999999999988764   46899999999999999999999999999999


Q ss_pred             CCCccceeeeehhhhhcChHH
Q 021611          190 NDTEESIWCFLCEAQLYGVDE  210 (310)
Q Consensus       190 ~d~~~~~~~~l~~a~l~~~~e  210 (310)
                      ++...+...+.+....|+...
T Consensus       104 ~~~~~~~~lg~~~~~~g~~~~  124 (172)
T PRK02603        104 KQPSALNNIAVIYHKRGEKAE  124 (172)
T ss_pred             ccHHHHHHHHHHHHHcCChHh
Confidence            887643333333334454333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.70  E-value=2.6e-09  Score=81.28  Aligned_cols=79  Identities=15%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             cccchhhhhhhhcCCCCchh--HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~--~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      ....|..++++++.  .+|.  +...++.+|.+++++|+|++|+..+++ ++.+|.+...++.+|.+++.+|+|++|++.
T Consensus         4 ~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    4 NYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             -HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             cHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            35568888888887  6663  677888899999999999999999999 888888888888889999999999999998


Q ss_pred             hhhh
Q 021611          181 FRID  184 (310)
Q Consensus       181 f~~A  184 (310)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            8875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.70  E-value=6.6e-09  Score=75.88  Aligned_cols=86  Identities=20%  Similarity=0.369  Sum_probs=80.1

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...++...+.+++.  ..|+++.+++.+|.++...|++++|++.|++++++.|.+...++.+|.++...|++++|...++
T Consensus        15 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   92 (100)
T cd00189          15 DYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE   92 (100)
T ss_pred             cHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45668888888887  8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCC
Q 021611          183 IDVAQNPN  190 (310)
Q Consensus       183 ~Al~l~P~  190 (310)
                      ++++.+|+
T Consensus        93 ~~~~~~~~  100 (100)
T cd00189          93 KALELDPN  100 (100)
T ss_pred             HHHccCCC
Confidence            99999884

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.70  E-value=6.8e-09  Score=82.20  Aligned_cols=95  Identities=16%  Similarity=0.271  Sum_probs=76.0

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-cceeee
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-ESIWCF  199 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-~~~~~~  199 (310)
                      +.+++.+|..+..+|++++|++.|+++++.+|++   ..+++.+|.++...|++++|+..|++++..+|+++. ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999876   568889999999999999999999999999888642 223333


Q ss_pred             ehh--hhhcChHHHHHhHHHh
Q 021611          200 LCE--AQLYGVDEARNRFLEV  218 (310)
Q Consensus       200 l~~--a~l~~~~eA~~~l~~~  218 (310)
                      ++.  ..++++++|...+.++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHH
Confidence            333  3677888888777653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.67  E-value=2.6e-08  Score=85.53  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=97.7

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      .+.++.-+..+..|--++.+|++++|...|.-...++|.++.+++.+|.++..+++|++|+..|..|..++++||.+.++
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            47888889999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeehhhhhcChHHHHHhHHHhcCC
Q 021611          198 CFLCEAQLYGVDEARNRFLEVGRD  221 (310)
Q Consensus       198 ~~l~~a~l~~~~eA~~~l~~~~~d  221 (310)
                      .+-|...+|+.++|+.+|..+...
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhC
Confidence            888999999999999999876543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=9.8e-09  Score=101.21  Aligned_cols=114  Identities=17%  Similarity=0.153  Sum_probs=100.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ....+...+....-  ++|.-+.--...|..++..|+|.+|+.+|++||+.+|+++..|-||+.+|..+|.+.+|+.+.+
T Consensus       339 ~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~  416 (539)
T KOG0548|consen  339 EAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK  416 (539)
T ss_pred             HHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44555666655555  8898888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      ++++++|++..+++..+.++..+.+++.|.+.+.+.
T Consensus       417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999887777766666788999999988763

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=1e-07  Score=92.84  Aligned_cols=197  Identities=14%  Similarity=0.117  Sum_probs=139.5

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      +.++...-|.++.  ++-.++.+..+.|++-+..|+++.|.+.|.+|+.-+..-.+++++.|+.+..+|++++|+++|-+
T Consensus       472 ~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  472 FADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             hhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence            4456666666776  88889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC----CChhhHHHHHHhhcCCCChHHHHHHhcCCC--CcchhHh
Q 021611          184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR----DPRPVMREAYNMFKGGGDPEKLVAAFSSGR--ENEYFYA  257 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~----d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~d~~~a  257 (310)
                      .-.+--++++......-....+.+..+|++.+.++..    ||. .+..+..+|...|+--++.++.-..-  =|-....
T Consensus       550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~-ilskl~dlydqegdksqafq~~ydsyryfp~nie~  628 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA-ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET  628 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH-HHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence            7776666666333222122256788899988776432    333 33455556777777777776652110  0111223


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHH--hhcccCC
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKV--HSLCRNW  307 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~--~~~~~~~  307 (310)
                      .-|+|.+|....=.++|+.+|++|--++..    ..-|.|..+  ..+-||+
T Consensus       629 iewl~ayyidtqf~ekai~y~ekaaliqp~----~~kwqlmiasc~rrsgny  676 (840)
T KOG2003|consen  629 IEWLAAYYIDTQFSEKAINYFEKAALIQPN----QSKWQLMIASCFRRSGNY  676 (840)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHhcCcc----HHHHHHHHHHHHHhcccH
Confidence            347888888888889999999998876543    334555433  3344443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.62  E-value=9.6e-09  Score=81.33  Aligned_cols=90  Identities=14%  Similarity=0.178  Sum_probs=81.0

Q ss_pred             hcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~  175 (310)
                      +...+|...|.+++.  .+|++   +.+++.+|.++...|++++|+..|+++++.+|++   +.+++.+|.++..+|+++
T Consensus        16 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   93 (119)
T TIGR02795        16 GDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE   93 (119)
T ss_pred             CCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence            356678899999887  77765   6899999999999999999999999999999985   678999999999999999


Q ss_pred             hhhhhhhhhhccCCCCCc
Q 021611          176 EGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~  193 (310)
                      +|+..++++++..|+++.
T Consensus        94 ~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        94 KAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHHHHHHCcCChh
Confidence            999999999999998764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.7e-08  Score=94.78  Aligned_cols=199  Identities=18%  Similarity=0.169  Sum_probs=137.0

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      .-+.++...|+.+|.  +.|+++..|.+|+.++...|+|++|+-+.++.++++|.++..+...|.++..+++..+|.+.|
T Consensus        63 k~Y~nal~~yt~Ai~--~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~  140 (486)
T KOG0550|consen   63 KTYGNALKNYTFAID--MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL  140 (486)
T ss_pred             hhHHHHHHHHHHHHH--hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence            345679999999998  999999999999999999999999999999999999999998888888887777777766444


Q ss_pred             h----------------------------------------------------hhhccCCCCCccceeeeehhhhhcChH
Q 021611          182 R----------------------------------------------------IDVAQNPNDTEESIWCFLCEAQLYGVD  209 (310)
Q Consensus       182 ~----------------------------------------------------~Al~l~P~d~~~~~~~~l~~a~l~~~~  209 (310)
                      +                                                    ..+++++.+.++...++++.-..++.+
T Consensus       141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~  220 (486)
T KOG0550|consen  141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD  220 (486)
T ss_pred             hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH
Confidence            3                                                    234455555555555555555555556


Q ss_pred             HHHHhHHH---hcCCChh------------hHHHHHH-hhcCCCChHHHHHHhcCC--CCcc--hhHhhhh--hhhhhhh
Q 021611          210 EARNRFLE---VGRDPRP------------VMREAYN-MFKGGGDPEKLVAAFSSG--RENE--YFYASLY--AGLFYES  267 (310)
Q Consensus       210 eA~~~l~~---~~~d~~~------------~~~~a~~-l~~~~~~~e~al~~~~~~--~~~d--~~~a~~~--lG~~~~~  267 (310)
                      .++..+.+   .+|+...            .+.+-.. .|+ .|++..+.+++...  ..|+  ...+++|  ++.+...
T Consensus       221 ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r  299 (486)
T KOG0550|consen  221 KAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR  299 (486)
T ss_pred             HHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence            66555544   2232111            0111111 233 45666666666422  2222  2334444  7778899


Q ss_pred             ccchhhHHHHHHHhhcCCCCCCChHHHHHH---HHHhhcccCCc
Q 021611          268 QKKADAAKLHILAACESPYGQRSDDYMAAL---AKVHSLCRNWS  308 (310)
Q Consensus       268 ~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l---a~~~~~~~~~~  308 (310)
                      +|+.++|+...+.|+++.     +.|.+.+   |..|+..+.|-
T Consensus       300 Lgrl~eaisdc~~Al~iD-----~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  300 LGRLREAISDCNEALKID-----SSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             cCCchhhhhhhhhhhhcC-----HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999954     2454443   88888888884

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.58  E-value=3.5e-08  Score=84.66  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ...+..|+..|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+..|+++++++|.....
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            3457889999999999999999999999999997763   4589999999999999999999999999999987654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.57  E-value=7.5e-08  Score=94.07  Aligned_cols=176  Identities=10%  Similarity=0.009  Sum_probs=127.1

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccC----------------------------
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD----------------------------  154 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~----------------------------  154 (310)
                      ..+.|...+++...  .+|+++.++..++.+|...|++++|++.+.+..+..                            
T Consensus       168 ~~~~Al~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~  245 (398)
T PRK10747        168 ENHAARHGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS  245 (398)
T ss_pred             CHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            56678888888887  999999999999999999999999995555544322                            


Q ss_pred             --------------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh--
Q 021611          155 --------------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV--  218 (310)
Q Consensus       155 --------------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~--  218 (310)
                                    |+++.++...+..+...|+.++|.+.++++++..| |+.  .....+....++.+++++.+.+.  
T Consensus       246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~--l~~l~~~l~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER--LVLLIPRLKTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH--HHHHHhhccCCChHHHHHHHHHHHh
Confidence                          33555666778999999999999999999999544 443  12222333457888888877653  


Q ss_pred             -cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          219 -GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       219 -~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                       .|+..........+....++.++|.+.++..  ..|+ ...+..++.++..+|+.++|.++|++++.+
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence             3333222222233455577888888887632  2333 234568999999999999999999999874

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.57  E-value=1.2e-07  Score=98.23  Aligned_cols=183  Identities=17%  Similarity=0.219  Sum_probs=130.8

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  202 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~  202 (310)
                      .....+..++.++..|++++|+..+.++|+.+|.++.+|+.+|.+|..+|+.+++...+-.|.-++|+|.+  .|..++.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e--~W~~lad  215 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE--LWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH--HHHHHHH
Confidence            35667778888888999999999999999999999999999999999999999999999999999999986  7877665


Q ss_pred             h--hhcChHHHHHhHHHhcC---CChhhHHHHHHhhcCCCChHHHHHHhc----CCCCc--chhHhhhhh-hhhhhhccc
Q 021611          203 A--QLYGVDEARNRFLEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFS----SGREN--EYFYASLYA-GLFYESQKK  270 (310)
Q Consensus       203 a--~l~~~~eA~~~l~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~----~~~~~--d~~~a~~~l-G~~~~~~G~  270 (310)
                      .  ++|.+++|+-++.++.+   ...+...+-..++...|+...++..+.    ..++.  +.+....+. ..++...++
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~  295 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE  295 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence            4  78899999999887543   333333333346666677666655443    22211  233333332 456666777


Q ss_pred             hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      -+.|.+.+..++.......+.+-..-++.+.+....|
T Consensus       296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~  332 (895)
T KOG2076|consen  296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS  332 (895)
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence            7999999999998322223333334556666655554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.4e-07  Score=90.96  Aligned_cols=191  Identities=13%  Similarity=0.032  Sum_probs=119.2

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      |..+-.+.|.  .+|++..+++..|.+++..||+++|+-+|+.|+.+.|-.-..|-.+-..|...|++.||...-+.+++
T Consensus       319 AL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~  396 (564)
T KOG1174|consen  319 ALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR  396 (564)
T ss_pred             HHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            4444455666  77777777777777777777777777777777777777777776666666677777777777777777


Q ss_pred             cCCCCCccceeee-ehhhhh-cChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcCCC-CcchhHhhhh
Q 021611          187 QNPNDTEESIWCF-LCEAQL-YGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR-ENEYFYASLY  260 (310)
Q Consensus       187 l~P~d~~~~~~~~-l~~a~l-~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~-~~d~~~a~~~  260 (310)
                      .-|+++.+.-..+ .+.+-. -.-++|...+++   +.|+--+.......+....|..+++++.++..+ +..+...|..
T Consensus       397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~  476 (564)
T KOG1174|consen  397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNH  476 (564)
T ss_pred             HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHH
Confidence            7776665332221 111110 112444444433   223222222222234444566777777765321 2334556888


Q ss_pred             hhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHh
Q 021611          261 AGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVH  301 (310)
Q Consensus       261 lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~  301 (310)
                      +|.++..++.+.+|..+|.+|+.++.  .+....-+|-++.
T Consensus       477 Lgd~~~A~Ne~Q~am~~y~~ALr~dP--~~~~sl~Gl~~lE  515 (564)
T KOG1174|consen  477 LGDIMRAQNEPQKAMEYYYKALRQDP--KSKRTLRGLRLLE  515 (564)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHH
Confidence            99999999999999999999999653  3334444554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.4e-08  Score=92.85  Aligned_cols=100  Identities=15%  Similarity=0.130  Sum_probs=90.5

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh---hhhhhhhhhhhhhccCCCCCccc
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD---RFEEGAEQFRIDVAQNPNDTEES  195 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg---~~~eA~~~f~~Al~l~P~d~~~~  195 (310)
                      .||+|++-|..+|.+|+.+|+++.|+..|.+|+++.|+++..+...|.+++...   .-.++.+.|++++++||+|..+.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            899999999999999999999999999999999999999999999999999884   36788999999999999999876


Q ss_pred             eeeeehhhhhcChHHHHHhHHHh
Q 021611          196 IWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       196 ~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      .+......+.|++++|......+
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~l  253 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQML  253 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHH
Confidence            66666666899999999987653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.55  E-value=3.2e-08  Score=81.25  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=79.8

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC---Ccccee
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND---TEESIW  197 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d---~~~~~~  197 (310)
                      |.++|++|.++..+|+.++|+..|++|++..+..   ..+++++|.++..+|++++|+..+++++...|++   ......
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4578999999999999999999999999986543   6799999999999999999999999999988884   333333


Q ss_pred             eeehhhhhcChHHHHHhHHHh
Q 021611          198 CFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       198 ~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      ..+++..+|+.+||+..+...
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            445555789999999988763

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.54  E-value=6.2e-09  Score=79.21  Aligned_cols=80  Identities=23%  Similarity=0.409  Sum_probs=67.5

Q ss_pred             ccccccchhhhhhccccCcc--hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHh
Q 021611          137 QGDVVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR  214 (310)
Q Consensus       137 ~g~~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~  214 (310)
                      +|++++|+..|+++++.+|.  +..+++.+|.+++..|+|++|++.+++ .+.+|.++......+.|..++|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  567888899999999999999999999 888887766545555666689999999998


Q ss_pred             HHH
Q 021611          215 FLE  217 (310)
Q Consensus       215 l~~  217 (310)
                      +.+
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.52  E-value=1.4e-07  Score=94.57  Aligned_cols=190  Identities=10%  Similarity=0.044  Sum_probs=135.4

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC-
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN-  188 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~-  188 (310)
                      ...|.--.+...+|..|..+|+|+.|+..|.+|+++        .|.-.......|.+|..+++|++|+..|++|+.+- 
T Consensus       193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            567877788888999999999999999999999999        77777777779999999999999999999999862 


Q ss_pred             ----CCCCc-cceeeeehhh--hhcChHHHHHhHHHhcC--------CCh---hhHHHHHHhhcCCCChHHHHHHhc---
Q 021611          189 ----PNDTE-ESIWCFLCEA--QLYGVDEARNRFLEVGR--------DPR---PVMREAYNMFKGGGDPEKLVAAFS---  247 (310)
Q Consensus       189 ----P~d~~-~~~~~~l~~a--~l~~~~eA~~~l~~~~~--------d~~---~~~~~a~~l~~~~~~~e~al~~~~---  247 (310)
                          ++++. +.....|+.+  ..|+++||...++++..        .+.   ..+......+...+++|++...+.   
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence                33332 2233444433  67899999988765321        111   123345556777778888765553   


Q ss_pred             ----CCCCcch-h--HhhhhhhhhhhhccchhhHHHHHHHhhcCCC---CCC---ChHHHHHHHHHhhcccCC
Q 021611          248 ----SGRENEY-F--YASLYAGLFYESQKKADAAKLHILAACESPY---GQR---SDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       248 ----~~~~~d~-~--~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~---~~~---s~~~~~~la~~~~~~~~~  307 (310)
                          .....+. .  .-...+|.+|..+|++++|...|++|+....   +..   -...++.||..+.+++..
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~  425 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY  425 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence                1122221 2  2233599999999999999999999998421   211   134567888887777654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.52  E-value=2.8e-07  Score=84.51  Aligned_cols=171  Identities=8%  Similarity=0.018  Sum_probs=109.1

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH---HHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc-ee
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY---LWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES-IW  197 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a---~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~-~~  197 (310)
                      .++..++..|..++..|+|++|++.|++++...|+.+.+   .+.+|.++++.++|++|+..|++.++..|+++... ++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            357778999999999999999999999999999987554   48999999999999999999999999999998632 22


Q ss_pred             eeehhh--hhc---------------C---hHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHh
Q 021611          198 CFLCEA--QLY---------------G---VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYA  257 (310)
Q Consensus       198 ~~l~~a--~l~---------------~---~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a  257 (310)
                      +-++..  .++               +   ..+|+..+.++..           .|-...-.+++...+... ......-
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-----------~yP~S~ya~~A~~rl~~l-~~~la~~  177 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-----------GYPNSQYTTDATKRLVFL-KDRLAKY  177 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-----------HCcCChhHHHHHHHHHHH-HHHHHHH
Confidence            222221  111               1   1223333333111           111111112221111100 0011122


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcCCCCC--CChHHHHHHHHHhhccc
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACESPYGQ--RSDDYMAALAKVHSLCR  305 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~--~s~~~~~~la~~~~~~~  305 (310)
                      .+..|..|...|.+..|+.-++.+++ +|+.  ..++.++.+..++...|
T Consensus       178 e~~ia~~Y~~~~~y~AA~~r~~~v~~-~Yp~t~~~~eal~~l~~ay~~lg  226 (243)
T PRK10866        178 ELSVAEYYTKRGAYVAVVNRVEQMLR-DYPDTQATRDALPLMENAYRQLQ  226 (243)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHcC
Confidence            34577888888888888888888887 4432  44666677766665554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.50  E-value=1.1e-07  Score=99.15  Aligned_cols=203  Identities=12%  Similarity=0.095  Sum_probs=149.0

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ...|..+|..++.  ..|...++|..+|-.....+...+|...+..++..|..++.++-..|..++....|.-|-+-|+.
T Consensus       512 ~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~  589 (1018)
T KOG2002|consen  512 TEVAEEMYKSILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET  589 (1018)
T ss_pred             hhHHHHHHHHHHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence            4456788888887  89999999999997777789999999999999999999999999999999999999999998887


Q ss_pred             hhccCCCCCccceeeeehhh--------------hhcChHHHHHhHHHhcC-CChhhHH--HHHHhhcCCCChHHHHHHh
Q 021611          184 DVAQNPNDTEESIWCFLCEA--------------QLYGVDEARNRFLEVGR-DPRPVMR--EAYNMFKGGGDPEKLVAAF  246 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a--------------~l~~~~eA~~~l~~~~~-d~~~~~~--~a~~l~~~~~~~e~al~~~  246 (310)
                      .++.--..+.++....|+..              ..+..+.|++.+.++.. +|...+.  -....+...|+..+|...+
T Consensus       590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF  669 (1018)
T KOG2002|consen  590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF  669 (1018)
T ss_pred             HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH
Confidence            77653333334444455443              11345677777776544 4554332  1223455566777766655


Q ss_pred             cCCCC--cchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          247 SSGRE--NEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       247 ~~~~~--~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      .....  .+....++++|-||..+|+|-.|++.|..+++--+...+.+.+.-||++++.+|.|.
T Consensus       670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~  733 (1018)
T KOG2002|consen  670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ  733 (1018)
T ss_pred             HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence            42211  123446778999999999999999999999986554556788889999999999874

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.50  E-value=5e-07  Score=91.23  Aligned_cols=173  Identities=14%  Similarity=0.064  Sum_probs=97.5

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh-
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-  203 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a-  203 (310)
                      ..|+.-......+++.++|+..++++++..|++...|.++|.++..+++.+.|.+.|...++..|+.+-  +|..++.. 
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip--LWllLakle  729 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP--LWLLLAKLE  729 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch--HHHHHHHHH
Confidence            455555555555666666666666666666666666666666666666666666666666666665432  44444333 


Q ss_pred             -hhcChHHHHHhHHH----------------------------------hcCC---ChhhHHHHHHhhcCCCC---hHHH
Q 021611          204 -QLYGVDEARNRFLE----------------------------------VGRD---PRPVMREAYNMFKGGGD---PEKL  242 (310)
Q Consensus       204 -~l~~~~eA~~~l~~----------------------------------~~~d---~~~~~~~a~~l~~~~~~---~e~a  242 (310)
                       +.|+...|+..+.+                                  +.++   ....+.++..+....++   ..+|
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA  809 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA  809 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence             33445555555444                                  2221   11122222222222211   1122


Q ss_pred             HHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          243 VAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       243 l~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      ++.+..     +....+..|..+....++++|+..|.+|++...  ...|.|..+=+.++++|+
T Consensus       810 Lkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa~fykfel~hG~  866 (913)
T KOG0495|consen  810 LKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWAWFYKFELRHGT  866 (913)
T ss_pred             HHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHHHHHHHHHHhCC
Confidence            222221     123344577888899999999999999999543  445898888888888874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.48  E-value=1.5e-07  Score=83.79  Aligned_cols=171  Identities=18%  Similarity=0.197  Sum_probs=109.2

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc---cce
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE---ESI  196 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~---~~~  196 (310)
                      .+..++..|..++..|+|++|+..|++++...|+.   +.+.+.+|.+++..|+|++|+..|++.++..|+++.   +.+
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            57889999999999999999999999999999874   678999999999999999999999999999999875   223


Q ss_pred             eeeehhhhhc-----------ChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhh
Q 021611          197 WCFLCEAQLY-----------GVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFY  265 (310)
Q Consensus       197 ~~~l~~a~l~-----------~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~  265 (310)
                      +.+++...+.           ...+|...+..+           ...|-.....+++...+.. .......-.+..|..|
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-----------i~~yP~S~y~~~A~~~l~~-l~~~la~~e~~ia~~Y  151 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL-----------IKRYPNSEYAEEAKKRLAE-LRNRLAEHELYIARFY  151 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH-----------HHH-TTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHH-----------HHHCcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            3332222110           112333333221           1111111122222222110 0011222345689999


Q ss_pred             hhccchhhHHHHHHHhhcCCCCC--CChHHHHHHHHHhhcccC
Q 021611          266 ESQKKADAAKLHILAACESPYGQ--RSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       266 ~~~G~~d~A~~~~~kAl~~~~~~--~s~~~~~~la~~~~~~~~  306 (310)
                      ...|.+..|+..++.+++ +|+.  ...+.+..+...+..+|.
T Consensus       152 ~~~~~y~aA~~r~~~v~~-~yp~t~~~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  152 YKRGKYKAAIIRFQYVIE-NYPDTPAAEEALARLAEAYYKLGL  193 (203)
T ss_dssp             HCTT-HHHHHHHHHHHHH-HSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred             HHcccHHHHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHhCC
Confidence            999999999999999999 4543  335677777877777663

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.48  E-value=1.4e-07  Score=87.56  Aligned_cols=105  Identities=14%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             HHHHHHHhhhhh-eeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          123 EAVVAIRRGMLL-FRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       123 ~~~a~~~rG~~~-~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      +...+|..+..+ +..|+|++|+..|++.++..|+.   +.+++.+|.+++..|++++|+..|+++++..|+++..    
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~----  216 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA----  216 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----
Confidence            346778888876 56799999999999999999987   5799999999999999999999999999999976531    


Q ss_pred             eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611          199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI  278 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~  278 (310)
                                                                              ..+++.+|.++..+|+.++|+..|
T Consensus       217 --------------------------------------------------------~dAl~klg~~~~~~g~~~~A~~~~  240 (263)
T PRK10803        217 --------------------------------------------------------ADAMFKVGVIMQDKGDTAKAKAVY  240 (263)
T ss_pred             --------------------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence                                                                    123445788888899999999999


Q ss_pred             HHhhcCCCCC
Q 021611          279 LAACESPYGQ  288 (310)
Q Consensus       279 ~kAl~~~~~~  288 (310)
                      +++++ .|+.
T Consensus       241 ~~vi~-~yP~  249 (263)
T PRK10803        241 QQVIK-KYPG  249 (263)
T ss_pred             HHHHH-HCcC
Confidence            99998 4543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.46  E-value=1.9e-08  Score=72.93  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=54.7

Q ss_pred             eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +..|++++|++.|+++++.+|++..+++.+|.++...|++++|.+.+++++..+|+++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            56799999999999999999999999999999999999999999999999999998754

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.8e-08  Score=93.91  Aligned_cols=69  Identities=17%  Similarity=0.392  Sum_probs=67.0

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      ..+.|++++++.+++|.+|+..++++|+++|++..++|.+|.++..+|+|+.|+.+|+++++++|++..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka  326 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA  326 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence            688999999999999999999999999999999999999999999999999999999999999999864

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.46  E-value=4.4e-08  Score=73.14  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccC-------cchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      |+-+.++.++|.++..+|++++|++.|++++++.       |.-...+.++|.++..+|++++|++.|++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7778999999999999999999999999999772       233678899999999999999999999999876

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=1.5e-07  Score=92.13  Aligned_cols=95  Identities=18%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      |.-..++|.++..++..|.+++|+..++..|+..|+++..+-.+|.++.+.++.++|++.+++++.++|+.+  ..+..+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~  380 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNL  380 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHH
Confidence            555666777777777777777777777777777777666666677777777777777777777777777553  244444


Q ss_pred             hhh--hhcChHHHHHhHHH
Q 021611          201 CEA--QLYGVDEARNRFLE  217 (310)
Q Consensus       201 ~~a--~l~~~~eA~~~l~~  217 (310)
                      +.+  +.|++.+|+..+.+
T Consensus       381 a~all~~g~~~eai~~L~~  399 (484)
T COG4783         381 AQALLKGGKPQEAIRILNR  399 (484)
T ss_pred             HHHHHhcCChHHHHHHHHH
Confidence            443  55666666666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.45  E-value=5.7e-08  Score=83.79  Aligned_cols=89  Identities=15%  Similarity=0.230  Sum_probs=75.8

Q ss_pred             hhcccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh----
Q 021611          101 RLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR----  173 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~----  173 (310)
                      .+...+|...|.+++.  ++|+   .+.+++++|.++..+|++++|+..++++++++|++..++..+|.++..+|+    
T Consensus        48 ~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a  125 (172)
T PRK02603         48 DGEYAEALENYEEALK--LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEE  125 (172)
T ss_pred             cCCHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhH
Confidence            3456678898988886  5554   467999999999999999999999999999999999999999999999888    


Q ss_pred             ----------hhhhhhhhhhhhccCCCC
Q 021611          174 ----------FEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       174 ----------~~eA~~~f~~Al~l~P~d  191 (310)
                                +++|++.++++++++|++
T Consensus       126 ~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        126 AGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                      567777777777777765

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.45  E-value=3.6e-07  Score=96.80  Aligned_cols=173  Identities=7%  Similarity=-0.051  Sum_probs=118.7

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh--ccchhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR--GLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~--G~a~~~lg~~~eA~~~  180 (310)
                      ....|...+.+++.  .+|+++.+...+..++...|+.++|+..+++++  +|.+..++..+  |.++..+|+|++|++.
T Consensus        49 d~~~Al~~L~qaL~--~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiel  124 (822)
T PRK14574         49 DTAPVLDYLQEESK--AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALAL  124 (822)
T ss_pred             CHHHHHHHHHHHHh--hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34478999999998  999996444488888889999999999999999  55554555445  7799999999999999


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChhhH--HHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRPVM--REAYNMFKGGGDPEKLVAAFSS--GRENEYF  255 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~~~--~~a~~l~~~~~~~e~al~~~~~--~~~~d~~  255 (310)
                      |+++++.+|+++.......+.....++.++|+..+.++.+ ++....  ..++ ++.+.++..++++.++.  ...|+..
T Consensus       125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay-L~~~~~~~~~AL~~~ekll~~~P~n~  203 (822)
T PRK14574        125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY-LNRATDRNYDALQASSEAVRLAPTSE  203 (822)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH-HHHhcchHHHHHHHHHHHHHhCCCCH
Confidence            9999999999987543222223367889999999988654 333222  2233 23334455446555542  2234434


Q ss_pred             HhhhhhhhhhhhccchhhHHHHHHH
Q 021611          256 YASLYAGLFYESQKKADAAKLHILA  280 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~A~~~~~k  280 (310)
                      ....-+-..+...|-.+.|.+...+
T Consensus       204 e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        204 EVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            3333344556666777677666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.45  E-value=3.3e-07  Score=91.97  Aligned_cols=179  Identities=16%  Similarity=0.211  Sum_probs=125.5

Q ss_pred             ccchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhccccC--------cchhhHHHhhccchh
Q 021611          104 IPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSLY  169 (310)
Q Consensus       104 ~~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~~  169 (310)
                      +.+|..+|.+++.      |+.+|.-+.++.++|.+|...|+++||...+++|+++-        |.-...+.+.+.++.
T Consensus       257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~  336 (508)
T KOG1840|consen  257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ  336 (508)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence            3445666665532      47899999999999999999999999999999999874        444667888999999


Q ss_pred             hhhhhhhhhhhhhhhhccC-----CCCC-ccceeeeehhh--hhcChHHHHHhHHHhcC---------C---ChhhHHHH
Q 021611          170 YLDRFEEGAEQFRIDVAQN-----PNDT-EESIWCFLCEA--QLYGVDEARNRFLEVGR---------D---PRPVMREA  229 (310)
Q Consensus       170 ~lg~~~eA~~~f~~Al~l~-----P~d~-~~~~~~~l~~a--~l~~~~eA~~~l~~~~~---------d---~~~~~~~a  229 (310)
                      .++++++|+..+++++++-     ++++ .+.....++..  ..|+++||.+.+.++..         +   ..+.+..+
T Consensus       337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la  416 (508)
T KOG1840|consen  337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA  416 (508)
T ss_pred             HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence            9999999999999998863     2221 11122333333  67999999998776432         1   11222222


Q ss_pred             HHhhcCCCChHHHHHHhc---------CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          230 YNMFKGGGDPEKLVAAFS---------SGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       230 ~~l~~~~~~~e~al~~~~---------~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      . .+...+.++++...+.         -+..++..+.+.+|+.+|..+|++|.|+++-.+++.
T Consensus       417 ~-~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  417 E-AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             H-HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            2 2233444444333321         123456677777899999999999999999999985

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=2.8e-07  Score=82.49  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=103.0

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      ...+..++.||..|-++|-..-|.-||++++.++|+.+.+++.+|+-+...|+|+.|.+.|+..+++||....+..++++
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            35789999999999999999999999999999999999999999999999999999999999999999988777677776


Q ss_pred             hhhhhcChHHHHHhHHHh-cCCChhhHHHHHHhhc-CCCChHHHHHHh
Q 021611          201 CEAQLYGVDEARNRFLEV-GRDPRPVMREAYNMFK-GGGDPEKLVAAF  246 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~-~~d~~~~~~~a~~l~~-~~~~~e~al~~~  246 (310)
                      +.-.-|++.-|.+++.+- ..||.+.++.+..++. ..-++.+|...+
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL  189 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNL  189 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHH
Confidence            666789999999988763 3355544444433333 334566666555

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.40  E-value=4.5e-07  Score=91.68  Aligned_cols=130  Identities=12%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             HHHHHhhhhheeccc---cccchhhhhhccccCcchhhHHHhhccchhhhh--------hhhhhhhhhhhhhcc--CCCC
Q 021611          125 VVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD--------RFEEGAEQFRIDVAQ--NPND  191 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~---~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg--------~~~eA~~~f~~Al~l--~P~d  191 (310)
                      -.++.+|..++..++   ++.|++.|++|++++|++..+|-.++.++....        +.+.+.+..++++.+  +|.+
T Consensus       340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~  419 (517)
T PRK10153        340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL  419 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence            344556666654443   556777777777777777666666666554432        223333334443332  3322


Q ss_pred             CccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhcc
Q 021611          192 TEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQK  269 (310)
Q Consensus       192 ~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G  269 (310)
                      +.  ++..++.                             .....|++++|.+.++.  ..++ ...++..+|.++...|
T Consensus       420 ~~--~~~ala~-----------------------------~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G  467 (517)
T PRK10153        420 PR--IYEILAV-----------------------------QALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG  467 (517)
T ss_pred             hH--HHHHHHH-----------------------------HHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence            22  1111111                             11123455555554432  2234 3568889999999999


Q ss_pred             chhhHHHHHHHhhcCCC
Q 021611          270 KADAAKLHILAACESPY  286 (310)
Q Consensus       270 ~~d~A~~~~~kAl~~~~  286 (310)
                      +.++|...|++|+.+..
T Consensus       468 ~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        468 DNRLAADAYSTAFNLRP  484 (517)
T ss_pred             CHHHHHHHHHHHHhcCC
Confidence            99999999999999654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=7.2e-07  Score=87.48  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=91.4

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...++....+..+.  ..|+|+..+-.+|.+++..|+..+|++-+++++.++|+.+...+++|.++.+.|++.+|+..++
T Consensus       321 ~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~  398 (484)
T COG4783         321 QYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN  398 (484)
T ss_pred             ccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence            45556677777777  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhh--hhcChHHHH
Q 021611          183 IDVAQNPNDTEESIWCFLCEA--QLYGVDEAR  212 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~  212 (310)
                      ..+..+|+|+.  .|..++.+  .+|+..++.
T Consensus       399 ~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         399 RYLFNDPEDPN--GWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHhhcCCCCch--HHHHHHHHHHHhCchHHHH
Confidence            99999999987  57776655  455554443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=2.4e-07  Score=87.23  Aligned_cols=177  Identities=10%  Similarity=-0.038  Sum_probs=141.4

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      .|...+.+-+.  .-|.+.......+.++-.++++++|++.|..+++++|.+.++.--.|.-|+.-++.|-|+..|++.+
T Consensus       274 ~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL  351 (478)
T KOG1129|consen  274 RALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL  351 (478)
T ss_pred             HHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence            44455555555  8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-----C-ChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHh
Q 021611          186 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-----D-PRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYA  257 (310)
Q Consensus       186 ~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-----d-~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a  257 (310)
                      .+--.+++-+.+.++|-...++++-++..++++..     + ..++|-.+.....+.|+..-|.+++..  ..+++...+
T Consensus       352 qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea  431 (478)
T KOG1129|consen  352 QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA  431 (478)
T ss_pred             HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence            99988888555555555556677878887776422     1 223333333344567888888888874  346677888


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      ..++|.+-.+.|++++|+..++.|-..
T Consensus       432 lnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  432 LNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            889999999999999999999999873

>PRK11906 transcriptional regulator; Provisional

Probab=98.38  E-value=1.5e-07  Score=92.41  Aligned_cols=112  Identities=12%  Similarity=-0.018  Sum_probs=97.2

Q ss_pred             ccchhhhhhhhc---CCCCchhHHHHHHHhhhhheec---------cccccchhhhhhccccCcchhhHHHhhccchhhh
Q 021611          104 IPSVSGIWDALT---GGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL  171 (310)
Q Consensus       104 ~~~a~~~~~~ai---~~~~~P~~~~a~~~rG~~~~~~---------g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l  171 (310)
                      ...|..++.+++   .  ++|+.+.+|-.++.+++..         .+-.+|++.-++|++++|+++.+++.+|.++...
T Consensus       274 ~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        274 IYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            345778899999   6  9999999999999888764         2345788999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          172 DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       172 g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      |+++.|...|++|+.++||++.++++.++.....|+.++|.+.+.+
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999988666665555678999999998877

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=4.9e-07  Score=92.08  Aligned_cols=110  Identities=17%  Similarity=0.262  Sum_probs=91.5

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      ....+|+++++. .|-.++.|....|....+.++|+++..+|+.+++++|-....|+.+|.+..+++++..|+++|..++
T Consensus       468 ~d~s~yEkawEl-sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv  546 (777)
T KOG1128|consen  468 HDPSLYEKAWEL-SNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV  546 (777)
T ss_pred             cChHHHHHHHHH-hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence            355667766651 2334667888889988999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccceeeeehhh--hhcChHHHHHhHHHh
Q 021611          186 AQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEV  218 (310)
Q Consensus       186 ~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~  218 (310)
                      .++|++.+  .|.++.-+  ++++-.+|...+.++
T Consensus       547 tL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EA  579 (777)
T KOG1128|consen  547 TLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEA  579 (777)
T ss_pred             hcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHH
Confidence            99999987  68777655  566667776666653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=1.7e-07  Score=82.96  Aligned_cols=89  Identities=16%  Similarity=0.251  Sum_probs=77.1

Q ss_pred             hcccchhhhhhhhcCCCCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE  176 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~e  176 (310)
                      +.+.+|..-|..++.  +-|.     ....|.+||.+++.+++.+.||.++.|||+|+|.+..|+..|+.+|.++..|++
T Consensus       109 gdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ee  186 (271)
T KOG4234|consen  109 GDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEE  186 (271)
T ss_pred             ccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHH
Confidence            355667777887776  5553     457899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhccCCCCC
Q 021611          177 GAEQFRIDVAQNPNDT  192 (310)
Q Consensus       177 A~~~f~~Al~l~P~d~  192 (310)
                      |+++|.+.++.+|...
T Consensus       187 aleDyKki~E~dPs~~  202 (271)
T KOG4234|consen  187 ALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHHHHhCcchH
Confidence            9999999999999543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=6e-07  Score=75.34  Aligned_cols=122  Identities=17%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             hhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-cceeeeehhhhhcC
Q 021611          132 MLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQLYG  207 (310)
Q Consensus       132 ~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-~~~~~~l~~a~l~~  207 (310)
                      ......|+...+.+.+++.++-+|+.   ..+.+.+|.+++..|++++|++.|++++...|+... ..++..+       
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L-------   91 (145)
T PF09976_consen   19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL-------   91 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH-------
Confidence            33336788888888899999999987   567788999999999999999999999997765421 0111111       


Q ss_pred             hHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCC-CcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611          208 VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR-ENEYFYASLYAGLFYESQKKADAAKLHILAAC  282 (310)
Q Consensus       208 ~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl  282 (310)
                                           +. ++...+++++++..+.... ++-...++..+|.++..+|++++|+..|++|+
T Consensus        92 ---------------------A~-~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ---------------------AR-ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             ---------------------HH-HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                                 11 1222445555555543221 12223345569999999999999999999986

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.34  E-value=8.6e-08  Score=93.84  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      -+...+..|..+|.++|.  ++|+.+..+-+|+.++++.+++-+|+.|+.+||+++|....+|+.+|.+...++++.+|+
T Consensus        15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence            333467789999999999  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCc
Q 021611          179 EQFRIDVAQNPNDTE  193 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~  193 (310)
                      .+|++...+.|+++.
T Consensus        93 ~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   93 LDLEKVKKLAPNDPD  107 (476)
T ss_pred             HHHHHhhhcCcCcHH
Confidence            999999999999976

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.33  E-value=1.6e-06  Score=79.51  Aligned_cols=163  Identities=16%  Similarity=0.116  Sum_probs=112.9

Q ss_pred             cccchhhhhhhhcCCCCchhHHH---HHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhh----
Q 021611          103 FIPSVSGIWDALTGGNNNSREAV---VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLD----  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~---a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg----  172 (310)
                      .+.+|...|.+++.  ..|..+.   +.+.+|.+++++|++++|+..|++.++++|++   +.+++.+|.++..++    
T Consensus        47 ~y~~Ai~~f~~l~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~  124 (243)
T PRK10866         47 NWKQAITQLEALDN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL  124 (243)
T ss_pred             CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence            46678888888887  7786654   45999999999999999999999999999986   567899998875554    


Q ss_pred             --------------hhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCCh-hhHHHHHHhhcCCC
Q 021611          173 --------------RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPR-PVMREAYNMFKGGG  237 (310)
Q Consensus       173 --------------~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~-~~~~~a~~l~~~~~  237 (310)
                                    .-.+|++.|++.++.-|+...              ..+|...+..+..... ..+ .+..++...+
T Consensus       125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y--------------a~~A~~rl~~l~~~la~~e~-~ia~~Y~~~~  189 (243)
T PRK10866        125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY--------------TTDATKRLVFLKDRLAKYEL-SVAEYYTKRG  189 (243)
T ss_pred             hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh--------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHcC
Confidence                          135788999999999997643              1233332222111000 001 1222334456


Q ss_pred             ChHHHHHHhcC-----CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611          238 DPEKLVAAFSS-----GRENEYFYASLYAGLFYESQKKADAAKLHILAAC  282 (310)
Q Consensus       238 ~~e~al~~~~~-----~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl  282 (310)
                      .+..|+..++.     +..+....+.+.++..|..+|..++|........
T Consensus       190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            67666655531     2233456688889999999999999998766543

>PRK11906 transcriptional regulator; Provisional

Probab=98.32  E-value=2.7e-07  Score=90.64  Aligned_cols=84  Identities=13%  Similarity=0.139  Sum_probs=78.5

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      ++..+-.++++  ++|+|+.++..+|.++...|+++.|+..|++|+.++|+++.+|+..|.++...|+.++|++.+++|+
T Consensus       322 ~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        322 KALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            45566667777  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCC
Q 021611          186 AQNPND  191 (310)
Q Consensus       186 ~l~P~d  191 (310)
                      +++|.-
T Consensus       400 rLsP~~  405 (458)
T PRK11906        400 QLEPRR  405 (458)
T ss_pred             ccCchh
Confidence            999953

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.32  E-value=2.3e-07  Score=79.52  Aligned_cols=87  Identities=13%  Similarity=0.104  Sum_probs=71.7

Q ss_pred             cccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchh-------hhh
Q 021611          103 FIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLY-------YLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~-------~lg  172 (310)
                      ...+|...+.+++.  +.|+   .+.+|+++|.++...|++++|+..|++|++++|....++.++|.++.       .+|
T Consensus        50 ~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g  127 (168)
T CHL00033         50 EYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG  127 (168)
T ss_pred             CHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence            46678888888876  5444   45699999999999999999999999999999999999999999998       666


Q ss_pred             hhh-------hhhhhhhhhhccCCCC
Q 021611          173 RFE-------EGAEQFRIDVAQNPND  191 (310)
Q Consensus       173 ~~~-------eA~~~f~~Al~l~P~d  191 (310)
                      +++       +|+..|++++..+|++
T Consensus       128 ~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        128 DSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            766       5566666677778754

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.31  E-value=1.3e-07  Score=89.40  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=85.0

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+-+.+|.++|.+.|.  .+|.|+..+.+|+++|+++++|..|..|++.|+.||-.+..+|-.||.+...+|...||.+
T Consensus       109 KQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk  186 (536)
T KOG4648|consen  109 KQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK  186 (536)
T ss_pred             hccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34456679999999998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCc
Q 021611          180 QFRIDVAQNPNDTE  193 (310)
Q Consensus       180 ~f~~Al~l~P~d~~  193 (310)
                      +++.++++.|+..+
T Consensus       187 D~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  187 DCETVLALEPKNIE  200 (536)
T ss_pred             hHHHHHhhCcccHH
Confidence            99999999998654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.30  E-value=1e-07  Score=82.90  Aligned_cols=90  Identities=23%  Similarity=0.382  Sum_probs=72.4

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheecccc----------ccchhhhhhccccCcchhhHHHhhccchhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV----------VGSVAEFDKAIELDPRQKAYLWQRGLSLYYL  171 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~----------~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l  171 (310)
                      .++..+.+.+.....  .||.+++++++=|.+++.+.++          ++|+.-|++||.++|+...+++++|.++..+
T Consensus         5 ~~FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    5 LFFEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            356667777776666  8999999999999999887554          5789999999999999999999999999988


Q ss_pred             hh-----------hhhhhhhhhhhhccCCCCCc
Q 021611          172 DR-----------FEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       172 g~-----------~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +.           |++|.++|++|...+|++..
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            76           89999999999999998753

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.26  E-value=1.4e-06  Score=92.33  Aligned_cols=191  Identities=8%  Similarity=-0.057  Sum_probs=125.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-------------------hHHHh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-------------------AYLWQ  163 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-------------------~a~~~  163 (310)
                      ...++..++...+.  .+|+....|+.+|.++++.+++++|...  +++.+-|.+.                   .|++.
T Consensus        46 ~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~  121 (906)
T PRK14720         46 LTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT  121 (906)
T ss_pred             CHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence            45566777777776  8999999999999999999998888777  7777777766                   89999


Q ss_pred             hccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC------CCh---hhHHHHHHhhc
Q 021611          164 RGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR------DPR---PVMREAYNMFK  234 (310)
Q Consensus       164 ~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~------d~~---~~~~~a~~l~~  234 (310)
                      +|.+|-.+|++++|...|+++++++|+|+.+..+++...+.. +.++|...+.++-.      ...   ..|....  ..
T Consensus       122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~--~~  198 (906)
T PRK14720        122 LAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLV--HY  198 (906)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH--hc
Confidence            999999999999999999999999999987544444444445 88888887765311      111   1111111  11


Q ss_pred             CCCChHHHHHHh---cCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611          235 GGGDPEKLVAAF---SSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS  302 (310)
Q Consensus       235 ~~~~~e~al~~~---~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~  302 (310)
                      ...+.+......   ... ..........-+=.+|-..+++++++..++.+++..  +.+.-..+.|+..+.
T Consensus       199 ~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~  268 (906)
T PRK14720        199 NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK  268 (906)
T ss_pred             CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence            111112211111   100 011111111123368888999999999999999954  444455666666554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.25  E-value=2.3e-07  Score=66.77  Aligned_cols=56  Identities=18%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK  158 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~  158 (310)
                      .+.+.+|...|.+++.  .+|+++.+|+.+|.++..+|++++|++.|+++++++|+++
T Consensus        10 ~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   10 QGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             CTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3357789999999998  9999999999999999999999999999999999999875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.25  E-value=4e-06  Score=84.67  Aligned_cols=180  Identities=18%  Similarity=0.214  Sum_probs=103.4

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      .+....+.+++...|++++|++++++....-++.....-.+|.++..+|++++|...|+..++.||++..  ++..+..+
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~--Yy~~L~~~   81 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD--YYRGLEEA   81 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHHHHHHH
Confidence            4555666666777777777777777766666666666666777777777777777777777777776653  22222111


Q ss_pred             h---hc----ChHHHHHhHHHh-----------------------------------cCCChhhHHHHHHhhcCCCCh--
Q 021611          204 Q---LY----GVDEARNRFLEV-----------------------------------GRDPRPVMREAYNMFKGGGDP--  239 (310)
Q Consensus       204 ~---l~----~~~eA~~~l~~~-----------------------------------~~d~~~~~~~a~~l~~~~~~~--  239 (310)
                      .   .+    ..+.-...+.++                                   .+...+.+..+-.++....+.  
T Consensus        82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~  161 (517)
T PF12569_consen   82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI  161 (517)
T ss_pred             HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence            1   00    011111111111                                   111112222222233322221  


Q ss_pred             -HHHHHHh----cCC----------CCcc--hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611          240 -EKLVAAF----SSG----------RENE--YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS  302 (310)
Q Consensus       240 -e~al~~~----~~~----------~~~d--~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~  302 (310)
                       ++....+    ...          ..++  ..+.+++++..|...|++++|+.+.++||++.  +...+++...|+.+-
T Consensus       162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilK  239 (517)
T PF12569_consen  162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence             1111111    100          1122  24677889999999999999999999999965  456799999999988


Q ss_pred             cccCC
Q 021611          303 LCRNW  307 (310)
Q Consensus       303 ~~~~~  307 (310)
                      ..|+.
T Consensus       240 h~G~~  244 (517)
T PF12569_consen  240 HAGDL  244 (517)
T ss_pred             HCCCH
Confidence            88863

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.25  E-value=2.2e-07  Score=77.13  Aligned_cols=84  Identities=20%  Similarity=0.198  Sum_probs=46.2

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      .+++.+.|.+++.  +-|.++.+|.+|+.++..+|+.++|++++++|+++.-+.    -.+|.+||.+|..+|+-+.|..
T Consensus        59 Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~  136 (175)
T KOG4555|consen   59 LDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA  136 (175)
T ss_pred             hHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence            3445555555555  555555555555555555555555555555555554322    2345555555555555555555


Q ss_pred             hhhhhhccCC
Q 021611          180 QFRIDVAQNP  189 (310)
Q Consensus       180 ~f~~Al~l~P  189 (310)
                      +|+.+.++-.
T Consensus       137 DFe~AA~LGS  146 (175)
T KOG4555|consen  137 DFEAAAQLGS  146 (175)
T ss_pred             hHHHHHHhCC
Confidence            5555554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.24  E-value=3e-07  Score=85.34  Aligned_cols=90  Identities=8%  Similarity=0.106  Sum_probs=81.0

Q ss_pred             hcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcc---hhhHHHhhccchhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---QKAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---~~~a~~~~G~a~~~lg~~~  175 (310)
                      +.+.+|...|..++.  ..|++   +.+++.+|.+|+..|++++|+..|.++++..|+   .+.+++.+|.++..+|+++
T Consensus       157 ~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        157 SRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             CCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            345678888888887  88887   589999999999999999999999999999887   4789999999999999999


Q ss_pred             hhhhhhhhhhccCCCCCc
Q 021611          176 EGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~  193 (310)
                      +|+..|++.++..|+...
T Consensus       235 ~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHHHHHCcCCHH
Confidence            999999999999998753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.23  E-value=1.7e-06  Score=90.19  Aligned_cols=175  Identities=10%  Similarity=-0.037  Sum_probs=90.7

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc--cCCCCCccceeeeeh--
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA--QNPNDTEESIWCFLC--  201 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~--l~P~d~~~~~~~~l~--  201 (310)
                      .+..+...|.+.|+.++|...|++..+  | +...|..+...|.+.|+.++|++.|++..+  +.|+..   .+..+.  
T Consensus       362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~~~ll~a  435 (697)
T PLN03081        362 ANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV---TFLAVLSA  435 (697)
T ss_pred             ehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHH
Confidence            334444444455555555555555433  2 233445555555555555555555555444  233321   111111  


Q ss_pred             hhhhcChHHHHHhHHHhcC----CChh-hHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          202 EAQLYGVDEARNRFLEVGR----DPRP-VMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~~~----d~~~-~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                      ..+.|..++|...+.....    .|.. .+.-...++...|+.++|.+.+...+-.+....+..+...+...|+.+.|+.
T Consensus       436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~  515 (697)
T PLN03081        436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL  515 (697)
T ss_pred             HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence            1144555555555544321    1211 1112223455567777777766533221222233445556667888888888


Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          277 HILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       277 ~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      .+++.+++..  .+...+..|...++..|+|.
T Consensus       516 ~~~~l~~~~p--~~~~~y~~L~~~y~~~G~~~  545 (697)
T PLN03081        516 AAEKLYGMGP--EKLNNYVVLLNLYNSSGRQA  545 (697)
T ss_pred             HHHHHhCCCC--CCCcchHHHHHHHHhCCCHH
Confidence            8888877432  23345678888899999885

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.22  E-value=2.8e-07  Score=66.95  Aligned_cols=62  Identities=21%  Similarity=0.251  Sum_probs=53.8

Q ss_pred             hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc-ChHHHHHhHHHh
Q 021611          157 QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEV  218 (310)
Q Consensus       157 ~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~-~~~eA~~~l~~~  218 (310)
                      ++..|..+|.+++..|+|++|+..|+++++++|+++.++.+++.+..++| ++++|+..+.++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999886666666666888 699999988763

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.21  E-value=2.5e-07  Score=87.51  Aligned_cols=91  Identities=19%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc
Q 021611          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  206 (310)
Q Consensus       127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~  206 (310)
                      .-.+|+-|+.+|+|+|||.+|.++|.++|.++..+.+|+.+|+++.+|..|..+...|+.+|.....++..+..+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999999999999999999999999999999999999999876665555544444688


Q ss_pred             ChHHHHHhHHH
Q 021611          207 GVDEARNRFLE  217 (310)
Q Consensus       207 ~~~eA~~~l~~  217 (310)
                      ..+||..+...
T Consensus       180 ~~~EAKkD~E~  190 (536)
T KOG4648|consen  180 NNMEAKKDCET  190 (536)
T ss_pred             hHHHHHHhHHH
Confidence            88998887654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.18  E-value=3.2e-07  Score=78.91  Aligned_cols=87  Identities=7%  Similarity=0.027  Sum_probs=80.3

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      -..+|..+|..+..  .+|.++..|+.+|.++..+|+|++|+..|..|..++++++...+..|.+++.+|+.++|..+|.
T Consensus        52 k~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~  129 (165)
T PRK15331         52 RLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE  129 (165)
T ss_pred             CHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence            45678888887777  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCC
Q 021611          183 IDVAQNPNDT  192 (310)
Q Consensus       183 ~Al~l~P~d~  192 (310)
                      .+++ +|.+.
T Consensus       130 ~a~~-~~~~~  138 (165)
T PRK15331        130 LVNE-RTEDE  138 (165)
T ss_pred             HHHh-CcchH
Confidence            9998 56554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.17  E-value=1.9e-06  Score=86.94  Aligned_cols=137  Identities=15%  Similarity=0.022  Sum_probs=99.0

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh--h
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC--E  202 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~--~  202 (310)
                      .+++.++..|...|++++|++.+++||+..|+.++.|+.+|.++-..|++++|.+.++.|-++|+.|-.  ++.-.+  .
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy--iNsK~aKy~  272 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY--INSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH--HHHHHHHHH
Confidence            567999999999999999999999999999999999999999999999999999999999999998753  221111  2


Q ss_pred             hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611          203 AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC  282 (310)
Q Consensus       203 a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl  282 (310)
                      .+.|+.++|...+..-..+.......+.          +          -...+...--|..|..+|++..|+..|....
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~----------~----------mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLN----------D----------MQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHH----------H----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2567777776665432111100000000          0          0112222236778888888888888888877


Q ss_pred             c
Q 021611          283 E  283 (310)
Q Consensus       283 ~  283 (310)
                      +
T Consensus       333 k  333 (517)
T PF12569_consen  333 K  333 (517)
T ss_pred             H
Confidence            6

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=3.6e-06  Score=81.38  Aligned_cols=155  Identities=15%  Similarity=0.074  Sum_probs=119.0

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh-
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE-  202 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~-  202 (310)
                      +.-|+.-|..++..++++.|+..-+|+|+.+|++..++..+|.++..+||.++|+-.|+.|..+.|-+.+.  +.++.. 
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hs  377 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI--YRGLFHS  377 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH--HHHHHHH
Confidence            45677777888888999999999999999999999999999999999999999999999999999977663  444433 


Q ss_pred             -hhhcChHHHHHhHHHhc---CCChhhHHHHHHhh------cCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611          203 -AQLYGVDEARNRFLEVG---RDPRPVMREAYNMF------KGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK  270 (310)
Q Consensus       203 -a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~------~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~  270 (310)
                       ...|++.||......+.   +...    ....++      ......|+|.+.++..  .+|+...|-..++.++...|+
T Consensus       378 YLA~~~~kEA~~~An~~~~~~~~sA----~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~  453 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRLFQNSA----RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP  453 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhcch----hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence             35688888876544321   1111    112222      2223357788777644  467777787788899999999


Q ss_pred             hhhHHHHHHHhhcC
Q 021611          271 ADAAKLHILAACES  284 (310)
Q Consensus       271 ~d~A~~~~~kAl~~  284 (310)
                      ++.++..+++++.+
T Consensus       454 ~~D~i~LLe~~L~~  467 (564)
T KOG1174|consen  454 TKDIIKLLEKHLII  467 (564)
T ss_pred             cchHHHHHHHHHhh
Confidence            99999999999994

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.15  E-value=7e-07  Score=84.38  Aligned_cols=86  Identities=16%  Similarity=0.235  Sum_probs=70.7

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .+..+.+.++.+|.  ++|.++..|-.|+.+++.+++...|+.+++.|++++|+....|-.+|.++..+|+|++|..+|+
T Consensus       129 ~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~  206 (377)
T KOG1308|consen  129 EFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA  206 (377)
T ss_pred             chhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence            45567777777777  8888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhhccCCC
Q 021611          183 IDVAQNPN  190 (310)
Q Consensus       183 ~Al~l~P~  190 (310)
                      .+.+++-+
T Consensus       207 ~a~kld~d  214 (377)
T KOG1308|consen  207 LACKLDYD  214 (377)
T ss_pred             HHHhcccc
Confidence            88887754

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.14  E-value=5.3e-06  Score=86.53  Aligned_cols=114  Identities=11%  Similarity=0.004  Sum_probs=65.9

Q ss_pred             ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhh
Q 021611           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus        98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~  175 (310)
                      +.+.+...+|..+|+...     +.+...|..+...|.+.|++++|++.|++..+  +.|+. ..+..+..++.+.|+++
T Consensus       269 y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-~t~~~ll~a~~~~g~~~  342 (697)
T PLN03081        269 YSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-FTFSIMIRIFSRLALLE  342 (697)
T ss_pred             HHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhccchH
Confidence            334444555666665433     34677888888888888888888888888754  34543 34555666666666666


Q ss_pred             hhhhhhhhhhccCCCCCccceeeeehh--hhhcChHHHHHhHHHh
Q 021611          176 EGAEQFRIDVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLEV  218 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~~  218 (310)
                      +|.+.+...++.... +....+..+..  .+.|+.++|...|.++
T Consensus       343 ~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m  386 (697)
T PLN03081        343 HAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRMEDARNVFDRM  386 (697)
T ss_pred             HHHHHHHHHHHhCCC-CCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence            666666666655421 11112222221  2445555555555543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.14  E-value=2.1e-06  Score=89.98  Aligned_cols=176  Identities=14%  Similarity=0.013  Sum_probs=126.6

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      .+...+=+++.  ++|+.+.+|-.+|..|...-+...|-.+|++|.++||.+..+.-..+..+.+..++++|.+..-.+-
T Consensus       476 ~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~  553 (1238)
T KOG1127|consen  476 LALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA  553 (1238)
T ss_pred             HHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence            34444545666  8999999999999999988899999999999999999998888778888888888888888766666


Q ss_pred             ccCCCCCccceeeeehhh--hhcChHHHHHhHHHhc-CCChhh--HHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhh
Q 021611          186 AQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVG-RDPRPV--MREAYNMFKGGGDPEKLVAAFS--SGRENEYFYAS  258 (310)
Q Consensus       186 ~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~-~d~~~~--~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~  258 (310)
                      +.+|-......|..++..  .-++.-.|+..++.+- .||.+.  +.-+...|-..|++..+++.+.  ...+|+..++.
T Consensus       554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~  633 (1238)
T KOG1127|consen  554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR  633 (1238)
T ss_pred             hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence            666655444455444444  4455666777666532 233322  2222233445677777777774  34567778888


Q ss_pred             hhhhhhhhhccchhhHHHHHHHhhc
Q 021611          259 LYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       259 ~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      |..+......|.+.+|...+...+.
T Consensus       634 fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  634 FKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            8888888889999999988888776

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.13  E-value=9.4e-07  Score=89.35  Aligned_cols=74  Identities=11%  Similarity=0.043  Sum_probs=70.0

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      .+|.++.+|.-+|..+...|++++|...|++|++++|+ +.+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            47788899999999999999999999999999999994 789999999999999999999999999999999885

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.12  E-value=1.1e-06  Score=86.16  Aligned_cols=69  Identities=25%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             ccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc---ceeeeehhhhhcChHHHHHhHHHhcC
Q 021611          152 ELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE---SIWCFLCEAQLYGVDEARNRFLEVGR  220 (310)
Q Consensus       152 ~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~---~~~~~l~~a~l~~~~eA~~~l~~~~~  220 (310)
                      +-+|+++.+++++|.+|+.+|+|++|+..|+++++++|+++++   +++.+-+++.+|+.++|++++.++..
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999864   34444455689999999999887543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.12  E-value=3.6e-06  Score=86.35  Aligned_cols=132  Identities=20%  Similarity=0.194  Sum_probs=103.2

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh-
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-  203 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a-  203 (310)
                      ..|...+..+...+..++|..+..+|-+++|..+..|+.+|..+...|.++||.+.|..|+.+||+++..  ...++.. 
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s--~~Ala~~l  728 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS--MTALAELL  728 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH--HHHHHHHH
Confidence            6888999999999999999999999999999999999999999999999999999999999999999763  2222221 


Q ss_pred             -hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611          204 -QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC  282 (310)
Q Consensus       204 -~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl  282 (310)
                       +.|+..-|                ....++          ... ...+|....+|+++|.++..+|+.++|-++|..|+
T Consensus       729 le~G~~~la----------------~~~~~L----------~da-lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  729 LELGSPRLA----------------EKRSLL----------SDA-LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HHhCCcchH----------------HHHHHH----------HHH-HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence             22211111                010011          111 11345667899999999999999999999999999


Q ss_pred             cCC
Q 021611          283 ESP  285 (310)
Q Consensus       283 ~~~  285 (310)
                      ++.
T Consensus       782 qLe  784 (799)
T KOG4162|consen  782 QLE  784 (799)
T ss_pred             hhc
Confidence            864

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.09  E-value=3.5e-06  Score=70.11  Aligned_cols=65  Identities=18%  Similarity=0.216  Sum_probs=59.7

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP  189 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P  189 (310)
                      ..+-..|.++...|+.++|++-|.++|.+-|..+.+|+||+.++.-.|+.++|++++++++++.-
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence            45556788999999999999999999999999999999999999999999999999999999865

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.09  E-value=9e-06  Score=82.37  Aligned_cols=200  Identities=16%  Similarity=0.128  Sum_probs=153.5

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      ++....-+...|-.++.  ..|..-..|....+.--.-|..++-.+.|++|+.--|.....|...+.-+...|+..+|..
T Consensus       528 k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~  605 (913)
T KOG0495|consen  528 KRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV  605 (913)
T ss_pred             hcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH
Confidence            33344445566666777  8999999999999988889999999999999999999998899888999999999999999


Q ss_pred             hhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC---CChhhHHHHHHhhcCCCChHHHHHHhcCCC--Cc
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFSSGR--EN  252 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~  252 (310)
                      .+..+++.+|++-+  +|......  ....+++|+..+.++-.   ..+..|.- ..+..-++..+++++.++...  -|
T Consensus       606 il~~af~~~pnsee--iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs-~~~er~ld~~eeA~rllEe~lk~fp  682 (913)
T KOG0495|consen  606 ILDQAFEANPNSEE--IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKS-ANLERYLDNVEEALRLLEEALKSFP  682 (913)
T ss_pred             HHHHHHHhCCCcHH--HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHH-hHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            99999999998655  66654333  34568899888877432   23333322 234444667888888776332  34


Q ss_pred             chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          253 EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      +..-.+..+|.+++++++++.|+..|...++.-  +.+...|..|+++....|+
T Consensus       683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHHHhcc
Confidence            555566779999999999999999999999842  2467888899998887764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.09  E-value=3.1e-06  Score=89.73  Aligned_cols=84  Identities=5%  Similarity=-0.072  Sum_probs=75.3

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      ..+.|.++-.+..+|.+..+|..+..++...|++++|++.++.+++.+|+....|+..|.+++..+++++|.-.  .++.
T Consensus        14 ~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~   91 (906)
T PRK14720         14 NEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID   91 (906)
T ss_pred             hhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence            45778877666789999999999999999999999999999999999999999999999999999999999888  7777


Q ss_pred             cCCCCC
Q 021611          187 QNPNDT  192 (310)
Q Consensus       187 l~P~d~  192 (310)
                      +-+.+.
T Consensus        92 ~~~~~~   97 (906)
T PRK14720         92 SFSQNL   97 (906)
T ss_pred             hccccc
Confidence            666554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.06  E-value=8.2e-07  Score=65.13  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG  165 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G  165 (310)
                      .+..+...++.++.  ++|+++..|+.+|.++..+|++++|+++|++++++.|+++.+...+.
T Consensus        10 ~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen   10 DYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            56778999999998  99999999999999999999999999999999999999887765544

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.06  E-value=1.4e-05  Score=86.97  Aligned_cols=62  Identities=11%  Similarity=-0.010  Sum_probs=27.9

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccc----cCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIE----LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~----l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      ..|..+-..+.+.|++++|.+.|++..+    +.|+ ...|..+-.++.+.|++++|.+.|+...+.
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            3444444444444555555555544432    2333 123333334444455555555555554444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.05  E-value=1.8e-06  Score=88.43  Aligned_cols=98  Identities=22%  Similarity=0.258  Sum_probs=91.0

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh--hhhhhhccCCCCCccce
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE--QFRIDVAQNPNDTEESI  196 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~--~f~~Al~l~P~d~~~~~  196 (310)
                      ++|-.+..|+.+|..+..+|..+||.+.|..|+.+||+++.....+|.++.+.|+-.-|.+  .+..+++++|.+++  +
T Consensus       679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e--a  756 (799)
T KOG4162|consen  679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE--A  756 (799)
T ss_pred             cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH--H
Confidence            8889999999999999999999999999999999999999999999999999999888888  99999999999988  6


Q ss_pred             eeeehhh--hhcChHHHHHhHHHh
Q 021611          197 WCFLCEA--QLYGVDEARNRFLEV  218 (310)
Q Consensus       197 ~~~l~~a--~l~~~~eA~~~l~~~  218 (310)
                      |++++..  ++|+.++|.++|...
T Consensus       757 W~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  757 WYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHH
Confidence            8888776  789999999998753

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=1.3e-05  Score=78.51  Aligned_cols=161  Identities=17%  Similarity=0.137  Sum_probs=121.8

Q ss_pred             HHHHHHHhhhhheec--cccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          123 EAVVAIRRGMLLFRQ--GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~--g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      -..+-.++.+.++.+  .++.+|-..-+.|+.++.-++.+..+.|.+-+.-|+++.|.+.|++++.-+....++.+..++
T Consensus       453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl  532 (840)
T KOG2003|consen  453 ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL  532 (840)
T ss_pred             hHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence            345667777777774  478899999999999999999999999999999999999999999999988877787777777


Q ss_pred             hhhhhcChHHHHHhHHHhcC---CChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHH
Q 021611          201 CEAQLYGVDEARNRFLEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAK  275 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~  275 (310)
                      ....+|+.+||+++|.++..   ....++-.....|....++.++++.+...  .-|.+....--+|.+|.+.|+-.+|+
T Consensus       533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf  612 (840)
T KOG2003|consen  533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF  612 (840)
T ss_pred             cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence            77799999999999988532   33333333334455555666776665421  11222223335899999999999999


Q ss_pred             HHHHHhhc
Q 021611          276 LHILAACE  283 (310)
Q Consensus       276 ~~~~kAl~  283 (310)
                      +++-..-+
T Consensus       613 q~~ydsyr  620 (840)
T KOG2003|consen  613 QCHYDSYR  620 (840)
T ss_pred             hhhhhccc
Confidence            98766555

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.05  E-value=9.8e-07  Score=56.20  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=26.7

Q ss_pred             hhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          147 FDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       147 f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      |+|||+++|+++.+|+++|.++...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            678888888888888888888888888888763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=8.6e-06  Score=75.93  Aligned_cols=118  Identities=14%  Similarity=0.021  Sum_probs=87.3

Q ss_pred             cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc
Q 021611          140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG  219 (310)
Q Consensus       140 ~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~  219 (310)
                      .++-+.-.+..++-||++.+.|..+|.+|..+|+++.|...|++|+++.|++++.  +.+++.+                
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aea----------------  199 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEA----------------  199 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHH----------------
Confidence            4455667788899999999999999999999999999999999999999999873  2222221                


Q ss_pred             CCChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          220 RDPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       220 ~d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                                +.+-.++..-.++...+.  ...++....+.+++|..+..+|++.+|...+++-+++.
T Consensus       200 ----------L~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         200 ----------LYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             ----------HHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence                      111111112222333332  22345567788899999999999999999999999954

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.01  E-value=2.3e-05  Score=85.42  Aligned_cols=204  Identities=12%  Similarity=0.026  Sum_probs=133.6

Q ss_pred             ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhh
Q 021611           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus        98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~  175 (310)
                      +-+.+...+|..++++.......| |...|..+-..|.+.|++++|++.|++..+  +.|+ ...|..+-.++.+.|+++
T Consensus       482 y~k~G~vd~A~~vf~eM~~~Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~d  559 (1060)
T PLN03218        482 CAKSGKVDAMFEVFHEMVNAGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVD  559 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHH
Confidence            344455667777787776422445 467888999999999999999999998855  4565 566778888899999999


Q ss_pred             hhhhhhhhhhc----cCCCCCccceeeee--hhhhhcChHHHHHhHHHhcCC---Chh-hHHHHHHhhcCCCChHHHHHH
Q 021611          176 EGAEQFRIDVA----QNPNDTEESIWCFL--CEAQLYGVDEARNRFLEVGRD---PRP-VMREAYNMFKGGGDPEKLVAA  245 (310)
Q Consensus       176 eA~~~f~~Al~----l~P~d~~~~~~~~l--~~a~l~~~~eA~~~l~~~~~d---~~~-~~~~a~~l~~~~~~~e~al~~  245 (310)
                      +|.+.|++..+    +.|+.   ..+..+  +..+.|++++|.+.+.++...   +.+ .+..+...+...|+.++|+..
T Consensus       560 eA~~lf~eM~~~~~gi~PD~---vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l  636 (1060)
T PLN03218        560 RAFDVLAEMKAETHPIDPDH---ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI  636 (1060)
T ss_pred             HHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            99999999875    35543   233333  233778899998888764331   221 223333445556777777776


Q ss_pred             hc----CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          246 FS----SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       246 ~~----~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +.    ....|+ ...+..+...+...|++++|++.+++..+.... .+...+..|..+++++|+|.
T Consensus       637 f~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~e  701 (1060)
T PLN03218        637 YDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWK  701 (1060)
T ss_pred             HHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHH
Confidence            64    222333 222334555667777888888888777763222 23455567777777777653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.01  E-value=1.2e-06  Score=54.98  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=16.5

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~  156 (310)
                      .+|+++|.++..+|++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.00  E-value=8e-06  Score=82.52  Aligned_cols=174  Identities=13%  Similarity=0.064  Sum_probs=126.9

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      .+|....-..+.  .+|.+..-|..+|.++...++|++||.+|..|+.++|++...+..++....++|+|+...+.-.+.
T Consensus        58 ~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~L  135 (700)
T KOG1156|consen   58 EEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQL  135 (700)
T ss_pred             HHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            356566656666  889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCccceeeeehhh--hhcChHHHHHhHHHh---c-CCChhh-H--HH--HH---HhhcCCCChHHHHHHhcCCC
Q 021611          185 VAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEV---G-RDPRPV-M--RE--AY---NMFKGGGDPEKLVAAFSSGR  250 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~---~-~d~~~~-~--~~--a~---~l~~~~~~~e~al~~~~~~~  250 (310)
                      ++++|..-.  .|.+.+.+  ..|++..|...+..-   . ..+.+. .  .+  .|   .+.. .|..+++++.+....
T Consensus       136 Lql~~~~ra--~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-~g~~q~ale~L~~~e  212 (700)
T KOG1156|consen  136 LQLRPSQRA--SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-AGSLQKALEHLLDNE  212 (700)
T ss_pred             HHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHhhh
Confidence            999997654  66666555  567888887765442   1 112211 1  01  11   1122 344566666554222


Q ss_pred             C--cchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          251 E--NEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       251 ~--~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      +  .|.+...--.+.++..+|++++|...|+.-+.
T Consensus       213 ~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  213 KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            1  22233333478899999999999999999998

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.00  E-value=2.8e-06  Score=80.33  Aligned_cols=88  Identities=17%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             hhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHH
Q 021611          131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE  210 (310)
Q Consensus       131 G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~e  210 (310)
                      +.-.+..|.+++||++|.++|+++|.....|-.||.++.++++...|+.++..++++||+.+..+-|++.+.+.+|++++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            34456679999999999999999999999999999999999999999999999999999999888889888889999999


Q ss_pred             HHHhHHHh
Q 021611          211 ARNRFLEV  218 (310)
Q Consensus       211 A~~~l~~~  218 (310)
                      |..++..+
T Consensus       201 aa~dl~~a  208 (377)
T KOG1308|consen  201 AAHDLALA  208 (377)
T ss_pred             HHHHHHHH
Confidence            98887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.99  E-value=1.8e-06  Score=57.84  Aligned_cols=43  Identities=14%  Similarity=0.081  Sum_probs=34.2

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhcc
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGL  166 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~  166 (310)
                      |.+|+.+|.+|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4577788888888888888888888888888888888877764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.99  E-value=2.6e-06  Score=71.48  Aligned_cols=108  Identities=16%  Similarity=0.147  Sum_probs=79.4

Q ss_pred             cchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      ..+...++.++.  .+|+.   ..+.+.+|.+++..|++++|++.|++++...|+.   +.+.+.++.++...|+|++|+
T Consensus        28 ~~~~~~~~~l~~--~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al  105 (145)
T PF09976_consen   28 AKAEAAAEQLAK--DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL  105 (145)
T ss_pred             HHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            334555666665  55554   7899999999999999999999999999988765   568889999999999999999


Q ss_pred             hhhhhhhccCCCCCccceeeeeh--hhhhcChHHHHHhHHH
Q 021611          179 EQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLE  217 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~~  217 (310)
                      ..++.. .-++  ..+.++..++  ....|+.++|+..+.+
T Consensus       106 ~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  106 ATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999762 2122  2222222233  3367778888777664

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.97  E-value=9.6e-06  Score=72.10  Aligned_cols=158  Identities=17%  Similarity=0.173  Sum_probs=102.2

Q ss_pred             cccchhhhhhhhcCCCCch---hHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhh----
Q 021611          103 FIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLD----  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P---~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg----  172 (310)
                      .+.+|...+.+++.  ..|   --+.+.+.+|.+++..|++++|+..|++.++..|++   +.+++.+|.+++.+.    
T Consensus        20 ~y~~Ai~~f~~l~~--~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~   97 (203)
T PF13525_consen   20 DYEEAIKLFEKLID--RYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL   97 (203)
T ss_dssp             -HHHHHHHHHHHHH--H-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence            45668888888876  444   466999999999999999999999999999999986   468999999987764    


Q ss_pred             -------hhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHH
Q 021611          173 -------RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAA  245 (310)
Q Consensus       173 -------~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~  245 (310)
                             ...+|+..|+..++.-|+...+              .+|...+..+........-.+..++...+.+.+|...
T Consensus        98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r  163 (203)
T PF13525_consen   98 RSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR  163 (203)
T ss_dssp             -TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred             hcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence                   3458999999999999987642              2222222211110000000122344446777776655


Q ss_pred             hcC-----CCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          246 FSS-----GRENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       246 ~~~-----~~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                      +..     +..+....+.+.++..|..+|..+.|..
T Consensus       164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            541     1223345577789999999999885543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.96  E-value=1.4e-05  Score=84.11  Aligned_cols=169  Identities=13%  Similarity=0.001  Sum_probs=117.8

Q ss_pred             eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh--hhhhcChHHHH
Q 021611          135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEAR  212 (310)
Q Consensus       135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~  212 (310)
                      ...++...|+..|-++++++|.+..+|-.+|.+|...-+..-|..+|++|.++||.|.++  |.+.+  .+.....++|.
T Consensus       469 ~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~  546 (1238)
T KOG1127|consen  469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAF  546 (1238)
T ss_pred             HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHH
Confidence            344668899999999999999999999999999999999999999999999999999874  44443  34667788888


Q ss_pred             HhHHHhcC-CChhh----HHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          213 NRFLEVGR-DPRPV----MREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       213 ~~l~~~~~-d~~~~----~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      .....+.+ ++...    +.....++-.-+..-+++..+.  ....|.++..|..+|.+|...|++..|.+.|++|..++
T Consensus       547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence            87655443 22211    1111111111222223333332  22356678888889999999999999999999999954


Q ss_pred             CCCCChHHHHHHHHHhhcccCC
Q 021611          286 YGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       286 ~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      .  .+-=..+-.+..+|-+|.+
T Consensus       627 P--~s~y~~fk~A~~ecd~GkY  646 (1238)
T KOG1127|consen  627 P--LSKYGRFKEAVMECDNGKY  646 (1238)
T ss_pred             c--HhHHHHHHHHHHHHHhhhH
Confidence            2  2212223447777776654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=4.4e-06  Score=75.72  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=87.6

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .++++...|.++|-  ++|..+..|-+|++++++..+++...++..+|++++|+...+++.+|..+.....|++|+..+.
T Consensus        25 ~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   25 RYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ  102 (284)
T ss_pred             hhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            57788889999998  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccC---CCCCccceeeeehhhhhcCh
Q 021611          183 IDVAQN---PNDTEESIWCFLCEAQLYGV  208 (310)
Q Consensus       183 ~Al~l~---P~d~~~~~~~~l~~a~l~~~  208 (310)
                      +|..+-   |-.....++..|..++-.++
T Consensus       103 ra~sl~r~~~~~~~~di~~~L~~ak~~~w  131 (284)
T KOG4642|consen  103 RAYSLLREQPFTFGDDIPKALRDAKKKRW  131 (284)
T ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHhCcc
Confidence            995532   11122235555555544433

>PLN03077 Protein ECB2; Provisional

Probab=97.93  E-value=3.8e-05  Score=82.00  Aligned_cols=168  Identities=12%  Similarity=0.037  Sum_probs=120.5

Q ss_pred             hhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc--cCCCCCccceeeee--hhhhhcC
Q 021611          132 MLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA--QNPNDTEESIWCFL--CEAQLYG  207 (310)
Q Consensus       132 ~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~--l~P~d~~~~~~~~l--~~a~l~~  207 (310)
                      ..|.+.|+.++|...|++.    +.+...|..+...+.+.|+.++|++.|++..+  +.|+...   +..+  +..+.|.
T Consensus       532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T---~~~ll~a~~~~g~  604 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT---FISLLCACSRSGM  604 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHhhcCh
Confidence            6677889999999999986    44577888899999999999999999999877  4565432   2222  2236788


Q ss_pred             hHHHHHhHHHhcC----CChh-hHHHHHHhhcCCCChHHHHHHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611          208 VDEARNRFLEVGR----DPRP-VMREAYNMFKGGGDPEKLVAAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAA  281 (310)
Q Consensus       208 ~~eA~~~l~~~~~----d~~~-~~~~a~~l~~~~~~~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kA  281 (310)
                      .++|...+.+...    .|.. .+.-...++...|+.++|.+.++.- ..|+.. .+-.+-..+...|+.+.|+...++.
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~-~~~aLl~ac~~~~~~e~~e~~a~~l  683 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA-VWGALLNACRIHRHVELGELAAQHI  683 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHH
Confidence            9999998876541    2332 2223344667788999998888743 344322 2222333456689999999999999


Q ss_pred             hcCCCCCCChHHHHHHHHHhhcccCCcC
Q 021611          282 CESPYGQRSDDYMAALAKVHSLCRNWSS  309 (310)
Q Consensus       282 l~~~~~~~s~~~~~~la~~~~~~~~~~~  309 (310)
                      +++..  .+..++..|+.++...|+|..
T Consensus       684 ~~l~p--~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        684 FELDP--NSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             HhhCC--CCcchHHHHHHHHHHCCChHH
Confidence            98643  355788899999999999964

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.6e-06  Score=77.14  Aligned_cols=95  Identities=21%  Similarity=0.207  Sum_probs=85.0

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      +.-+-..|.-++.-.+|..|+..|.+||.++|..+.+|.+++.+++++.+|+.+..+-+++++++||...+++..+.+..
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            34455679999999999999999999999999999999999999999999999999999999999999887666666666


Q ss_pred             hhcChHHHHHhHHHh
Q 021611          204 QLYGVDEARNRFLEV  218 (310)
Q Consensus       204 ~l~~~~eA~~~l~~~  218 (310)
                      +.+++.+|+..+.++
T Consensus        90 ~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   90 QSKGYDEAIKVLQRA  104 (284)
T ss_pred             hhccccHHHHHHHHH
Confidence            888899999988764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=1.3e-05  Score=75.05  Aligned_cols=170  Identities=15%  Similarity=0.111  Sum_probs=93.1

Q ss_pred             eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHh
Q 021611          135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR  214 (310)
Q Consensus       135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~  214 (310)
                      ++-.+|++||+...--.+.+|....++-.+|.+|+...+|.+|.++|++.-.+-|+...-.++..-.+-+.+.+..|++.
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            55667777777777777777777777777777777777777777777777777775443222222222245566666665


Q ss_pred             HHHhcCCChhhHHHH-----HHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611          215 FLEVGRDPRPVMREA-----YNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR  289 (310)
Q Consensus       215 l~~~~~d~~~~~~~a-----~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~  289 (310)
                      +..+...+. .....     ...+. .++..-....++..+...........|-+..+.|++++|.+-|+.|++  .+.-
T Consensus       101 ~~~~~D~~~-L~~~~lqLqaAIkYs-e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq--vsGy  176 (459)
T KOG4340|consen  101 AFLLLDNPA-LHSRVLQLQAAIKYS-EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ--VSGY  176 (459)
T ss_pred             HHHhcCCHH-HHHHHHHHHHHHhcc-cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh--hcCC
Confidence            544333211 11111     11111 222222222222111111222334566677777777777777777777  2233


Q ss_pred             ChHHHHHHHHHhhcccCCc
Q 021611          290 SDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       290 s~~~~~~la~~~~~~~~~~  308 (310)
                      .+-.-.++|.+|.+.|++-
T Consensus       177 qpllAYniALaHy~~~qya  195 (459)
T KOG4340|consen  177 QPLLAYNLALAHYSSRQYA  195 (459)
T ss_pred             CchhHHHHHHHHHhhhhHH
Confidence            3345567777777777653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.91  E-value=1.5e-05  Score=67.18  Aligned_cols=72  Identities=8%  Similarity=0.122  Sum_probs=66.7

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      .+..++..|...+..|+|++|++.|+......|..   ..+.+.+|-+++..|+|++|+..+++-++++|+++..
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            46789999999999999999999999999999864   6789999999999999999999999999999998863

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.90  E-value=1.7e-06  Score=62.53  Aligned_cols=62  Identities=10%  Similarity=0.083  Sum_probs=55.1

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG  165 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G  165 (310)
                      +.+.+|...+.+++.  .+|+++.+++.+|.+++.+|++++|.+.+++++..+|+++.++.-++
T Consensus         5 ~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    5 GDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             THHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            356779999999998  99999999999999999999999999999999999999877765554

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.87  E-value=4.1e-05  Score=73.64  Aligned_cols=204  Identities=17%  Similarity=0.096  Sum_probs=122.1

Q ss_pred             cccchhcccchhhhhhhhcCCCCch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhh
Q 021611           97 TFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus        97 ~~~~~~~~~~a~~~~~~ai~~~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~  175 (310)
                      +-++++....+.....++-+  ..| +.-.....|...+..+||+..|.+..++++++.|.++....-.-.+|...|+|.
T Consensus       127 AA~qrgd~~~an~yL~eaae--~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~  204 (400)
T COG3071         127 AAQQRGDEDRANRYLAEAAE--LAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQ  204 (400)
T ss_pred             HHHhcccHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHH
Confidence            33444444444444444444  422 334667788888899999999999999999999999999888889999999998


Q ss_pred             hhhhhhhhhhcc------------------------CCCCCcc--ceeeee------------hh----hhhcChHHHHH
Q 021611          176 EGAEQFRIDVAQ------------------------NPNDTEE--SIWCFL------------CE----AQLYGVDEARN  213 (310)
Q Consensus       176 eA~~~f~~Al~l------------------------~P~d~~~--~~~~~l------------~~----a~l~~~~eA~~  213 (310)
                      +......+..+.                        ++++.+.  .-|..+            +.    .++|+.++|..
T Consensus       205 ~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~  284 (400)
T COG3071         205 ALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE  284 (400)
T ss_pred             HHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence            888877665432                        2222221  011111            00    12345555555


Q ss_pred             hHHHhcC-CChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCC
Q 021611          214 RFLEVGR-DPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRS  290 (310)
Q Consensus       214 ~l~~~~~-d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s  290 (310)
                      .+.+.-+ .-++.....+-.. ..++++.-++.++  ....|+....+..+|.++...+.+.+|..+|+.|++  .+.. 
T Consensus       285 ~i~~~Lk~~~D~~L~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s-  360 (400)
T COG3071         285 IIEDALKRQWDPRLCRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPS-  360 (400)
T ss_pred             HHHHHHHhccChhHHHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCC-
Confidence            4443222 1111111111111 1233333333332  112233345677899999999999999999999999  3333 


Q ss_pred             hHHHHHHHHHhhcccC
Q 021611          291 DDYMAALAKVHSLCRN  306 (310)
Q Consensus       291 ~~~~~~la~~~~~~~~  306 (310)
                      ...+.-+|+++.+.|.
T Consensus       361 ~~~~~~la~~~~~~g~  376 (400)
T COG3071         361 ASDYAELADALDQLGE  376 (400)
T ss_pred             hhhHHHHHHHHHHcCC
Confidence            3445778999888774

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.86  E-value=5.1e-06  Score=52.12  Aligned_cols=34  Identities=18%  Similarity=0.429  Sum_probs=30.7

Q ss_pred             hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611          158 KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       158 ~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d  191 (310)
                      +.+|+++|.++..+|++++|+++|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.85  E-value=1.3e-05  Score=82.00  Aligned_cols=155  Identities=10%  Similarity=0.075  Sum_probs=114.8

Q ss_pred             CCCchhhhhhhhccCCCccc---ccccccccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhh
Q 021611           56 NPPLYSFHRSLLTSKAPLSV---QTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGM  132 (310)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~  132 (310)
                      |.|-+...-...++..-.+=   +..++... .++++.+ -+.+.+.++ -+.++...|.....  +||-....||.+|-
T Consensus       453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~-sarA~r~-~~~~~~~~~-~fs~~~~hle~sl~--~nplq~~~wf~~G~  527 (777)
T KOG1128|consen  453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI-SARAQRS-LALLILSNK-DFSEADKHLERSLE--INPLQLGTWFGLGC  527 (777)
T ss_pred             CCCcchhHHHhhhhccChHHHHHHHHHhhhh-hHHHHHh-hccccccch-hHHHHHHHHHHHhh--cCccchhHHHhccH
Confidence            56666665555554443322   22232221 2333222 123333433 35567788888887  99999999999999


Q ss_pred             hheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeee--ehhhhhcChHH
Q 021611          133 LLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF--LCEAQLYGVDE  210 (310)
Q Consensus       133 ~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~--l~~a~l~~~~e  210 (310)
                      +.+++++++.|+.+|.+.+.++|++..+|.|+..+|.++|+-.+|-..+.+|++-|-++..  +|-+  +.....|.+++
T Consensus       528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--iWENymlvsvdvge~ed  605 (777)
T KOG1128|consen  528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--IWENYMLVSVDVGEFED  605 (777)
T ss_pred             HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--eeechhhhhhhcccHHH
Confidence            9999999999999999999999999999999999999999999999999999999966665  5544  34447888988


Q ss_pred             HHHhHHH
Q 021611          211 ARNRFLE  217 (310)
Q Consensus       211 A~~~l~~  217 (310)
                      |...+.+
T Consensus       606 a~~A~~r  612 (777)
T KOG1128|consen  606 AIKAYHR  612 (777)
T ss_pred             HHHHHHH
Confidence            8887654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=3e-05  Score=77.83  Aligned_cols=186  Identities=11%  Similarity=0.074  Sum_probs=118.4

Q ss_pred             cccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH
Q 021611           81 SLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY  160 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a  160 (310)
                      .+++.++-|..++         -+.++..-.++++.  +.|++..+....-.+++.+++|++|+...++-..+.-.+ ..
T Consensus        14 ~l~t~ln~~~~~~---------e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~   81 (652)
T KOG2376|consen   14 ALLTDLNRHGKNG---------EYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SF   81 (652)
T ss_pred             HHHHHHHHhccch---------HHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hh
Confidence            3445555554444         56678888899998  889999999999999999999999995544433222211 12


Q ss_pred             HHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChh---hHHHHHHhhcCCC
Q 021611          161 LWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRP---VMREAYNMFKGGG  237 (310)
Q Consensus       161 ~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~---~~~~a~~l~~~~~  237 (310)
                      .+.++.++|++++.|+|+++++   -.++.+.-..-.++-...+++++++|.+.++.+.....+   ....+ .+.....
T Consensus        82 ~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~-nl~a~~a  157 (652)
T KOG2376|consen   82 FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA-NLLAVAA  157 (652)
T ss_pred             hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHH
Confidence            2689999999999999999999   344444321111222233789999999998876432111   11111 1111000


Q ss_pred             C-hHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          238 D-PEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       238 ~-~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      . ..+.+......+ -+.....|+.+-.+...|++.+|++.+++|++
T Consensus       158 ~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  158 ALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             hhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            0 000122212222 23455677899999999999999999999943

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=3.4e-05  Score=70.58  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      .|...|++.-.  .-|+++..-...|+.+-..|++++|++.|+..++-||++...+-.+-.+.-.+|+--+|++.+...+
T Consensus        70 lAq~C~~~L~~--~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL  147 (289)
T KOG3060|consen   70 LAQKCINQLRD--RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYL  147 (289)
T ss_pred             HHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            34445554443  3366666666666666666666666666666666666665555544445555566666666666666


Q ss_pred             ccCCCCCccceeeeehhh--hhcChHHHHHhHHH
Q 021611          186 AQNPNDTEESIWCFLCEA--QLYGVDEARNRFLE  217 (310)
Q Consensus       186 ~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~  217 (310)
                      +.=++|.+  +|..++..  ..|++++|.-++.+
T Consensus       148 ~~F~~D~E--AW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  148 DKFMNDQE--AWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             HHhcCcHH--HHHHHHHHHHhHhHHHHHHHHHHH
Confidence            66666655  45555443  34555555555544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=2e-05  Score=74.27  Aligned_cols=79  Identities=13%  Similarity=0.118  Sum_probs=41.7

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      .+.|.++|-....  .+|...++++.+|..+.+.|..+.||..-+. +-..|+.     .-+...+|.=|...|-+|.|.
T Consensus        51 ~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~-L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          51 PDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             cchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            3445555555554  5666666666666666666666666554332 2223432     234445555555555556665


Q ss_pred             hhhhhhh
Q 021611          179 EQFRIDV  185 (310)
Q Consensus       179 ~~f~~Al  185 (310)
                      +.|...+
T Consensus       128 ~~f~~L~  134 (389)
T COG2956         128 DIFNQLV  134 (389)
T ss_pred             HHHHHHh
Confidence            5555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.78  E-value=1.1e-05  Score=50.21  Aligned_cols=33  Identities=27%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             hHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611          159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d  191 (310)
                      .+++.+|.+++.+|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            355566666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.78  E-value=5.2e-06  Score=51.75  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~  157 (310)
                      |.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.75  E-value=2.9e-05  Score=78.56  Aligned_cols=170  Identities=12%  Similarity=0.070  Sum_probs=122.9

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      -....++++.  ..|...+..-..|..+..+|+-++|.+....+++.||.....|.-.|+++....+|++|+++|+.|++
T Consensus        26 gLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~  103 (700)
T KOG1156|consen   26 GLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK  103 (700)
T ss_pred             HHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence            4455566676  88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccceeeeehhh--hhcChHHHHH---hHHHhcCCChhhH-HHHHHhhcCCCChHHHHHHh---cC----CCCc-
Q 021611          187 QNPNDTEESIWCFLCEA--QLYGVDEARN---RFLEVGRDPRPVM-REAYNMFKGGGDPEKLVAAF---SS----GREN-  252 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a--~l~~~~eA~~---~l~~~~~d~~~~~-~~a~~l~~~~~~~e~al~~~---~~----~~~~-  252 (310)
                      ++|++..  +|+-++..  ++++++....   .+.+..+..+..+ +-+.+.+. .|.+..+...+   ..    .+.+ 
T Consensus       104 ~~~dN~q--ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-~g~y~~A~~il~ef~~t~~~~~s~~  180 (700)
T KOG1156|consen  104 IEKDNLQ--ILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-LGEYKMALEILEEFEKTQNTSPSKE  180 (700)
T ss_pred             cCCCcHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCHH
Confidence            9999976  67776655  5666554433   4455444433332 11211121 23343333322   21    1222 


Q ss_pred             --chhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611          253 --EYFYASLYAGLFYESQKKADAAKLHILAA  281 (310)
Q Consensus       253 --d~~~a~~~lG~~~~~~G~~d~A~~~~~kA  281 (310)
                        .......+....+...|..++|.+++..-
T Consensus       181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  181 DYEHSELLLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence              23455666777888899999998888653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=9e-05  Score=69.94  Aligned_cols=184  Identities=16%  Similarity=0.091  Sum_probs=110.3

Q ss_pred             chhcccchhhhhhhhcCCCCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF  174 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~  174 (310)
                      +||-.+.|..+-...+   ..|+     ...+.+.+|.-|+..|=++.|...|...+...-.-..|.-.+-.+|....+|
T Consensus        81 sRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW  157 (389)
T COG2956          81 SRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW  157 (389)
T ss_pred             hcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence            3444455556554444   2332     3467778888888888888888888777665444466777777888888888


Q ss_pred             hhhhhhhhhhhccCCCCCc---cceeeeehhh--hhcChHHHHHhHHHhcC-CCh---hhHHHHHHhhcCCCChHHHHHH
Q 021611          175 EEGAEQFRIDVAQNPNDTE---ESIWCFLCEA--QLYGVDEARNRFLEVGR-DPR---PVMREAYNMFKGGGDPEKLVAA  245 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~---~~~~~~l~~a--~l~~~~eA~~~l~~~~~-d~~---~~~~~a~~l~~~~~~~e~al~~  245 (310)
                      ++|++.-++..++.|+...   +.+++.++..  ...+.+.|...+.++.+ ++.   ..+ ....+....|+++++++.
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi-~lG~v~~~~g~y~~AV~~  236 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI-ILGRVELAKGDYQKAVEA  236 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh-hhhHHHHhccchHHHHHH
Confidence            8888888887777776543   2333334333  22446666666665332 221   111 222344456777777666


Q ss_pred             hcCC--CCcchh-HhhhhhhhhhhhccchhhHHHHHHHhhcCCCC
Q 021611          246 FSSG--RENEYF-YASLYAGLFYESQKKADAAKLHILAACESPYG  287 (310)
Q Consensus       246 ~~~~--~~~d~~-~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~  287 (310)
                      ++..  .+++.. ...-.+-.+|.++|+.++.+..++++.+...|
T Consensus       237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            6532  233321 12223556788888888888888888874433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=1.3e-05  Score=73.86  Aligned_cols=94  Identities=21%  Similarity=0.249  Sum_probs=82.9

Q ss_pred             HHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC---ccceeeee
Q 021611          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT---EESIWCFL  200 (310)
Q Consensus       127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~---~~~~~~~l  200 (310)
                      .|+.+.-++..|+|.+|.+.|..-|+.-|+.   +.++|.+|.+++.+|+|++|...|..+++-.|+.+   ++.+..+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7888999999999999999999999999986   68999999999999999999999999999988875   44555666


Q ss_pred             hhhhhcChHHHHHhHHHhcC
Q 021611          201 CEAQLYGVDEARNRFLEVGR  220 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~~  220 (310)
                      +...+|+.++|...+.++.+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHH
Confidence            66789999999999888654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=1.2e-05  Score=71.32  Aligned_cols=95  Identities=19%  Similarity=0.241  Sum_probs=79.3

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      +.-+-.-|+-++..|+|++|...|.+||++-|.-     ...|.++|.++.+++.++.|+++..++++++|.+-.+...+
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            4556677999999999999999999999999853     45677999999999999999999999999999766544433


Q ss_pred             eehhhhhcChHHHHHhHHHh
Q 021611          199 FLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~  218 (310)
                      .-+.-++..+++|+.++.++
T Consensus       175 Aeayek~ek~eealeDyKki  194 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKI  194 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHH
Confidence            43444678899999998875

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.70  E-value=1.7e-05  Score=65.10  Aligned_cols=88  Identities=18%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             cchhcccchhhhhhhhcCCCC-chhHHHHHHHhhhhheeccccccchhhhhhccccCcc---hhhHHHhhccchhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNN-NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---QKAYLWQRGLSLYYLDRF  174 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~-~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---~~~a~~~~G~a~~~lg~~  174 (310)
                      +..|...+|..+|.+++...+ .+.-..+++.+|.++..+|++++|+..++++++-.|+   +.......+.++..+|++
T Consensus        12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~   91 (120)
T PF12688_consen   12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP   91 (120)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence            334466789999999887423 4456789999999999999999999999999999898   777888899999999999


Q ss_pred             hhhhhhhhhhhc
Q 021611          175 EEGAEQFRIDVA  186 (310)
Q Consensus       175 ~eA~~~f~~Al~  186 (310)
                      +||++.+-.++.
T Consensus        92 ~eAl~~~l~~la  103 (120)
T PF12688_consen   92 KEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988775

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.67  E-value=1.3e-05  Score=59.50  Aligned_cols=73  Identities=11%  Similarity=0.028  Sum_probs=55.7

Q ss_pred             cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhc
Q 021611          155 PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFK  234 (310)
Q Consensus       155 P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~  234 (310)
                      |+-..++.++|.++..+|+|++|++.|++++++......                                         
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------------------------------   40 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-----------------------------------------   40 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-----------------------------------------
Confidence            667789999999999999999999999999977211100                                         


Q ss_pred             CCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          235 GGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       235 ~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                                     ..++....+..+|.++..+|++++|+.+|++|++
T Consensus        41 ---------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   41 ---------------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ---------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                           0011123455799999999999999999999987

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.64  E-value=1.2e-05  Score=51.12  Aligned_cols=34  Identities=21%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             hhhhhcCCCCchhHHHHHHHhhhhheeccccccchh
Q 021611          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVA  145 (310)
Q Consensus       110 ~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~  145 (310)
                      +|.++|.  ++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3678888  999999999999999999999999974

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=4.3e-05  Score=69.90  Aligned_cols=89  Identities=12%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|.++|+.+++  -||.|..++..+-.+.-.+|+-.+||+..+.-++..|++.++|+.++.+|...|+|+.|.-|++
T Consensus       101 ~~~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen  101 NYKEAIEYYESLLE--DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             chhhHHHHHHHHhc--cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            56678888888888  8899999999888888899999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCc
Q 021611          183 IDVAQNPNDTE  193 (310)
Q Consensus       183 ~Al~l~P~d~~  193 (310)
                      +.+-++|-++.
T Consensus       179 E~ll~~P~n~l  189 (289)
T KOG3060|consen  179 ELLLIQPFNPL  189 (289)
T ss_pred             HHHHcCCCcHH
Confidence            99999997764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2.6e-05  Score=75.38  Aligned_cols=84  Identities=18%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhh-hhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG-AEQFR  182 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA-~~~f~  182 (310)
                      +..|...+++++.  ++|+|..++|.||.++..+|+|+.|+.+|++|++++|++..+...+..+..+..++++. .+.|.
T Consensus       273 ~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  273 YKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             HHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4468899999998  99999999999999999999999999999999999999999999999998888888877 66888


Q ss_pred             hhhccCC
Q 021611          183 IDVAQNP  189 (310)
Q Consensus       183 ~Al~l~P  189 (310)
                      +.+..-+
T Consensus       351 ~mF~k~~  357 (397)
T KOG0543|consen  351 NMFAKLA  357 (397)
T ss_pred             HHhhccc
Confidence            8877654

>PLN03077 Protein ECB2; Provisional

Probab=97.61  E-value=0.00011  Score=78.54  Aligned_cols=179  Identities=12%  Similarity=0.007  Sum_probs=120.0

Q ss_pred             ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhh
Q 021611           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus        98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~  175 (310)
                      +.+.+...+|...|+..      +.+...|..+...|...|+.++|++.|++..+  +.|+... +..+-.++.+.|+++
T Consensus       534 y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~  606 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVT  606 (857)
T ss_pred             HHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHH
Confidence            34444455565555543      45678999999999999999999999998776  5676443 444445788899999


Q ss_pred             hhhhhhhhhhccCCCCCccceeeee--hhhhhcChHHHHHhHHHhcCCChhhH-HHHHHhhcCCCChHHHHHHhc--CCC
Q 021611          176 EGAEQFRIDVAQNPNDTEESIWCFL--CEAQLYGVDEARNRFLEVGRDPRPVM-REAYNMFKGGGDPEKLVAAFS--SGR  250 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~~~~~~~l--~~a~l~~~~eA~~~l~~~~~d~~~~~-~~a~~l~~~~~~~e~al~~~~--~~~  250 (310)
                      +|.+.|+...+..+-.|....+..+  +..+.|+++||.+.+.+....|.... ..+.......++.+.+....+  ...
T Consensus       607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l  686 (857)
T PLN03077        607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL  686 (857)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence            9999999988543222221122222  23378999999999998754444432 222223344556555433332  123


Q ss_pred             CcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          251 ENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       251 ~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      .|+....+..++.+|...|++++|.+..+...+
T Consensus       687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            444555566789999999999999999988766

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.57  E-value=3.2e-05  Score=65.19  Aligned_cols=89  Identities=22%  Similarity=0.316  Sum_probs=74.9

Q ss_pred             cccchhhhhhhhcCCCCch---hHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhh---
Q 021611          103 FIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDR---  173 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P---~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~---  173 (310)
                      .+.+|...|..+..  .-|   -...+.+.+|-+++..|++++|++.+++-|+|+|++   +-+++.+|++++.+.+   
T Consensus        25 ~Y~~A~~~le~L~~--ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~  102 (142)
T PF13512_consen   25 NYEEAIKQLEALDT--RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSL  102 (142)
T ss_pred             CHHHHHHHHHHHHh--cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHH
Confidence            35557777777655  444   456899999999999999999999999999999987   4678899999999987   


Q ss_pred             ------------hhhhhhhhhhhhccCCCCCc
Q 021611          174 ------------FEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       174 ------------~~eA~~~f~~Al~l~P~d~~  193 (310)
                                  ..+|..+|++.++.=|+...
T Consensus       103 ~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen  103 QSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             hhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence                        88899999999998887653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.54  E-value=3.7e-05  Score=75.68  Aligned_cols=93  Identities=17%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc
Q 021611          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  206 (310)
Q Consensus       127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~  206 (310)
                      .-..+.-.+.-++|+.|+..|.|||+++|+.+..+-+|+.++.+.++|.+|+.++.+|++++|....+++.++.+-..++
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34556777888999999999999999999999999999999999999999999999999999988887676665555788


Q ss_pred             ChHHHHHhHHHhc
Q 021611          207 GVDEARNRFLEVG  219 (310)
Q Consensus       207 ~~~eA~~~l~~~~  219 (310)
                      ++.+|...++...
T Consensus        87 ~~~~A~~~l~~~~   99 (476)
T KOG0376|consen   87 EFKKALLDLEKVK   99 (476)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888743

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.51  E-value=2.2e-05  Score=52.49  Aligned_cols=41  Identities=24%  Similarity=0.318  Sum_probs=36.1

Q ss_pred             hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          158 KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       158 ~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      +.+++.+|.++..+|++++|++.|+++++.+|+|++  +|..+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~--a~~~L   41 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE--AWRAL   41 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH--HHHHh
Confidence            367899999999999999999999999999999987  45443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.51  E-value=0.00044  Score=63.44  Aligned_cols=73  Identities=10%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES  195 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~  195 (310)
                      .+.-|++-|...++.|++++|+..|++.....|..   ..+.+.++.++++.++|++|+...++-+++.|+++.+.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            46789999999999999999999999999999975   57889999999999999999999999999999988743

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.50  E-value=0.00035  Score=65.80  Aligned_cols=148  Identities=13%  Similarity=0.040  Sum_probs=86.2

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc---cee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE---SIW  197 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~---~~~  197 (310)
                      +.++....--|.++...|++++|+..+.+.     +..+...-.-.++..++|++.|.+.++..-+.+.+..-.   .+|
T Consensus        99 ~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~aw  173 (290)
T PF04733_consen   99 ESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAW  173 (290)
T ss_dssp             -CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            356677788889999999999999999987     334455556678899999999999999998887754321   111


Q ss_pred             eeehhhhhc--ChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHH
Q 021611          198 CFLCEAQLY--GVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAK  275 (310)
Q Consensus       198 ~~l~~a~l~--~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~  275 (310)
                      .+   ...|  ++.+|.-.|.++....                             +........++.++..+|++++|.
T Consensus       174 v~---l~~g~e~~~~A~y~f~El~~~~-----------------------------~~t~~~lng~A~~~l~~~~~~eAe  221 (290)
T PF04733_consen  174 VN---LATGGEKYQDAFYIFEELSDKF-----------------------------GSTPKLLNGLAVCHLQLGHYEEAE  221 (290)
T ss_dssp             HH---HHHTTTCCCHHHHHHHHHHCCS-------------------------------SHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HH---HHhCchhHHHHHHHHHHHHhcc-----------------------------CCCHHHHHHHHHHHHHhCCHHHHH
Confidence            11   0112  2444444444432211                             111222223555666666666666


Q ss_pred             HHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          276 LHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       276 ~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      ..+.+|++..  +.+++.+.|+..+-.-.|+.
T Consensus       222 ~~L~~al~~~--~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  222 ELLEEALEKD--PNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHCCC---CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHhc--cCCHHHHHHHHHHHHHhCCC
Confidence            6666666522  23456666665555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.28  E-value=0.00023  Score=69.25  Aligned_cols=181  Identities=12%  Similarity=0.070  Sum_probs=102.9

Q ss_pred             hhcccchhhhhhhhcCC--CCch--hHHHHHHHhhhhheeccccc-------------cchhhhhhccc-------cCc-
Q 021611          101 RLFIPSVSGIWDALTGG--NNNS--REAVVAIRRGMLLFRQGDVV-------------GSVAEFDKAIE-------LDP-  155 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~--~~~P--~~~~a~~~rG~~~~~~g~~~-------------eAl~~f~kAl~-------l~P-  155 (310)
                      .+-+.+|..++.+-+..  ++..  -...++|++|++|...|+.-             |+-++|+.|.+       +-- 
T Consensus       108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~  187 (639)
T KOG1130|consen  108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK  187 (639)
T ss_pred             hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555543220  1111  23689999999999998753             33344444433       322 


Q ss_pred             -----chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC----c--cceeeeehhhhhcChHHHHHhHHHh------
Q 021611          156 -----RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT----E--ESIWCFLCEAQLYGVDEARNRFLEV------  218 (310)
Q Consensus       156 -----~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~----~--~~~~~~l~~a~l~~~~eA~~~l~~~------  218 (310)
                           ....++-++|..||-+|+|+.|+..-+.=+++...+-    +  ++.+.+-|..-+|+++-|++.++..      
T Consensus       188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie  267 (639)
T KOG1130|consen  188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE  267 (639)
T ss_pred             hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence                 2345778999999999999999998888777755442    2  2233333444678888888876541      


Q ss_pred             -cCCChh---h--HHHHHHhhcCCCChHHHHHHhc--------CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          219 -GRDPRP---V--MREAYNMFKGGGDPEKLVAAFS--------SGRENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       219 -~~d~~~---~--~~~a~~l~~~~~~~e~al~~~~--------~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                       +....+   .  +...|.++   ..+++|+....        .........+...+|..+-.+|..++|+....+.+++
T Consensus       268 lg~r~vEAQscYSLgNtytll---~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  268 LGNRTVEAQSCYSLGNTYTLL---KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             hcchhHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence             111111   0  01122222   12444443331        1111223444555777777778888887777777775

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.25  E-value=9.3e-05  Score=72.47  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=88.4

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ...+..++.+...  .+|   ++...++.+++..++..+|+...+++++.+|.+...+...+..+...++++.|++..++
T Consensus       185 ~~~ai~lle~L~~--~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~  259 (395)
T PF09295_consen  185 YDEAIELLEKLRE--RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK  259 (395)
T ss_pred             HHHHHHHHHHHHh--cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3445566666555  444   56677899999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccceeeeehh--hhhcChHHHHHhHHH
Q 021611          184 DVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLE  217 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~  217 (310)
                      ++++.|++-+.  |..|+.  .++|++++|+..+..
T Consensus       260 av~lsP~~f~~--W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  260 AVELSPSEFET--WYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHhCchhHHH--HHHHHHHHHhcCCHHHHHHHHhc
Confidence            99999988774  555554  489999999887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.21  E-value=0.0017  Score=60.59  Aligned_cols=158  Identities=12%  Similarity=0.070  Sum_probs=92.1

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCc-----ch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-----RQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-----~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      ++.|..-|..|-..|++++|.+.|.++.++.-     .. ..++...|.++ +.+++++|++.|++|+++--        
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~--------  105 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYR--------  105 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHH--------
Confidence            36677778889999999999999999977652     22 44555666665 44499999999999986521        


Q ss_pred             eeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCC-CChHHHHHHhc-------C-CCCcchhHhhhhhhhhhhhc
Q 021611          198 CFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGG-GDPEKLVAAFS-------S-GRENEYFYASLYAGLFYESQ  268 (310)
Q Consensus       198 ~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~-~~~e~al~~~~-------~-~~~~d~~~a~~~lG~~~~~~  268 (310)
                            ..|++..|...+.+           +..++... +++++|+..+.       . ............++.++...
T Consensus       106 ------~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l  168 (282)
T PF14938_consen  106 ------EAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL  168 (282)
T ss_dssp             ------HCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred             ------hcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence                  22334444333332           11223333 44444443332       1 11111222334588899999


Q ss_pred             cchhhHHHHHHHhhcCCC--CC---CChHHHHHHHHHhhcccCC
Q 021611          269 KKADAAKLHILAACESPY--GQ---RSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       269 G~~d~A~~~~~kAl~~~~--~~---~s~~~~~~la~~~~~~~~~  307 (310)
                      |++++|+..|++.....-  +.   ..-+++.....+|+..|+.
T Consensus       169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~  212 (282)
T PF14938_consen  169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY  212 (282)
T ss_dssp             T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H
T ss_pred             CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH
Confidence            999999999999887321  11   1124555566677777653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.17  E-value=0.00031  Score=61.40  Aligned_cols=55  Identities=22%  Similarity=0.297  Sum_probs=43.3

Q ss_pred             cccchhhhhhccccCcchhhHHHhhccchhhhhhh----------hhhhhhhhhhhccCCCCCcc
Q 021611          140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF----------EEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       140 ~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~----------~eA~~~f~~Al~l~P~d~~~  194 (310)
                      |+.|.+.++.....||.+.+++++.|.++..+.++          ++|+.-|++|+.++|+..++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            56788899999999999999999999999988554          67888888899999987664

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.16  E-value=0.00092  Score=59.01  Aligned_cols=67  Identities=15%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccc-cCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~-l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d  191 (310)
                      .-.+.+|.++..+|++.||..+|.+++. +.-+++.....++.+.+..+++.+|...+++..+-+|..
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~  157 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence            3456778888888888888888887664 455667777778888888888888888888888877754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.0013  Score=66.43  Aligned_cols=120  Identities=14%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  205 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l  205 (310)
                      +.+.--..+...|+|++|+...++.+...|++..++...-.++..+++|++|+...++-....-.+.- .+....|..++
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrl   92 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHc
Confidence            33444455778899999999999999999999999999999999999999999654443332222111 02344566688


Q ss_pred             cChHHHHHhHHHhcCCChhhHH-HHHHhhcCCCChHHHHHHhc
Q 021611          206 YGVDEARNRFLEVGRDPRPVMR-EAYNMFKGGGDPEKLVAAFS  247 (310)
Q Consensus       206 ~~~~eA~~~l~~~~~d~~~~~~-~a~~l~~~~~~~e~al~~~~  247 (310)
                      ++.++|+.++....++++.... .+-.+|. .+++++++..+.
T Consensus        93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~  134 (652)
T KOG2376|consen   93 NKLDEALKTLKGLDRLDDKLLELRAQVLYR-LERYDEALDIYQ  134 (652)
T ss_pred             ccHHHHHHHHhcccccchHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            8888888888765555442211 2222233 556666666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.14  E-value=0.00098  Score=71.17  Aligned_cols=184  Identities=14%  Similarity=0.057  Sum_probs=112.3

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcc--------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC---
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT---  192 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~---  192 (310)
                      ..++..+|.++..+|++++|.+.+++++++-..        ....+..+|.+++..|++++|...+++++.+.....   
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  610 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ  610 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence            356778899999999999999999999886321        223455789999999999999999999988643211   


Q ss_pred             ccceeeeeh--hhhhcChHHHHHhHHHhc---CC---ChhhHH----HHHHhhcCCCChHHHHHHhcCCCCcc--hh---
Q 021611          193 EESIWCFLC--EAQLYGVDEARNRFLEVG---RD---PRPVMR----EAYNMFKGGGDPEKLVAAFSSGRENE--YF---  255 (310)
Q Consensus       193 ~~~~~~~l~--~a~l~~~~eA~~~l~~~~---~d---~~~~~~----~a~~l~~~~~~~e~al~~~~~~~~~d--~~---  255 (310)
                      ....+..++  ....|++++|...+.++.   ..   ......    .........|..+++...+.....+.  ..   
T Consensus       611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  690 (903)
T PRK04841        611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL  690 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence            111121122  225788888887765531   11   111100    01112223566666666553211111  11   


Q ss_pred             -HhhhhhhhhhhhccchhhHHHHHHHhhcC--CCCCC--ChHHHHHHHHHhhcccCC
Q 021611          256 -YASLYAGLFYESQKKADAAKLHILAACES--PYGQR--SDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       256 -~a~~~lG~~~~~~G~~d~A~~~~~kAl~~--~~~~~--s~~~~~~la~~~~~~~~~  307 (310)
                       ..+..++.++..+|++++|...++++++.  ..+..  -...+..+|.++.+.|+.
T Consensus       691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~  747 (903)
T PRK04841        691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK  747 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence             11345778888899999999999998874  11211  112344667888777764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.14  E-value=7.5e-05  Score=46.56  Aligned_cols=30  Identities=27%  Similarity=0.363  Sum_probs=16.3

Q ss_pred             HHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611          160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNP  189 (310)
Q Consensus       160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P  189 (310)
                      +|+.+|.++..+|++++|++.|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555555555555555555555555555

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.12  E-value=0.0012  Score=54.13  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=94.9

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhcc-chhhhhhhhhhhhhhhhhhccCCC-CCccce
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGL-SLYYLDRFEEGAEQFRIDVAQNPN-DTEESI  196 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~-a~~~lg~~~eA~~~f~~Al~l~P~-d~~~~~  196 (310)
                      ..+.....+...|......+++.+++..+.+++..++.........+. ++...|++++|+..|.+++..+|. ......
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  169 (291)
T COG0457          90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA  169 (291)
T ss_pred             hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence            456677788888888888888888888888888877776555555555 788888888888888888776663 111111


Q ss_pred             eeeeh--hhhhcChHHHHHhHHHhcCCC----hhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhc
Q 021611          197 WCFLC--EAQLYGVDEARNRFLEVGRDP----RPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQ  268 (310)
Q Consensus       197 ~~~l~--~a~l~~~~eA~~~l~~~~~d~----~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~  268 (310)
                      .....  ....++.+++...+.+.....    ..........+...+..+++...+...  ..+.........+..+...
T Consensus       170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (291)
T COG0457         170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL  249 (291)
T ss_pred             HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence            11111  123456677766665532211    111111212222233445554444311  1121223334455555566


Q ss_pred             cchhhHHHHHHHhhcC
Q 021611          269 KKADAAKLHILAACES  284 (310)
Q Consensus       269 G~~d~A~~~~~kAl~~  284 (310)
                      |+.++|...+.++++.
T Consensus       250 ~~~~~~~~~~~~~~~~  265 (291)
T COG0457         250 GRYEEALEALEKALEL  265 (291)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            6778888888777773

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.12  E-value=0.00023  Score=69.68  Aligned_cols=85  Identities=13%  Similarity=0.083  Sum_probs=75.9

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..+|..+.++++.  .+|.++..+...+..++..|+++.|+....+|+++.|+....|+.++.+|..+|+|++|+..++.
T Consensus       216 E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  216 EVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            3466777777887  89999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             hhccCCC
Q 021611          184 DVAQNPN  190 (310)
Q Consensus       184 Al~l~P~  190 (310)
                      +-..-++
T Consensus       294 ~Pm~~~~  300 (395)
T PF09295_consen  294 CPMLTYK  300 (395)
T ss_pred             CcCCCCc
Confidence            6544333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.11  E-value=0.00023  Score=62.73  Aligned_cols=116  Identities=10%  Similarity=0.128  Sum_probs=95.4

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch--hhHHHhhccchhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ--KAYLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~--~~a~~~~G~a~~~lg~~~eA  177 (310)
                      +.|-..++...|.++++| +--.++.....++.+.+..+++.+|...+++..+-+|.+  +..+.-.|.++..+|++++|
T Consensus       101 elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A  179 (251)
T COG4700         101 ELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA  179 (251)
T ss_pred             HhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence            334456788889888775 566788999999999999999999999999999999976  77788899999999999999


Q ss_pred             hhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          178 AEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       178 ~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      ...|+.++.--|+ +++..++.--++.+|+..|+.+.+..
T Consensus       180 esafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         180 ESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            9999999999886 44445444445577877777776554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.00095  Score=63.56  Aligned_cols=116  Identities=13%  Similarity=0.089  Sum_probs=92.0

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhcccc-CcchhhHHH---hhccchhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKAYLW---QRGLSLYYLDRFEE  176 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l-~P~~~~a~~---~~G~a~~~lg~~~e  176 (310)
                      ++-.++|...|++++.  --|.+-.++..--.+++..|+.+.-...++|.|-. +|+.|-+-|   ..+..+...|-|++
T Consensus       116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            4467789999999998  89999999999999999999999999999999988 877644333   46677888999999


Q ss_pred             hhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC
Q 021611          177 GAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR  220 (310)
Q Consensus       177 A~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~  220 (310)
                      |.+.-++++++||.|.-  +....+..  ..++++|+.+-+.+-..
T Consensus       194 AEk~A~ralqiN~~D~W--a~Ha~aHVlem~~r~Keg~eFM~~ted  237 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCW--ASHAKAHVLEMNGRHKEGKEFMYKTED  237 (491)
T ss_pred             HHHHHHhhccCCCcchH--HHHHHHHHHHhcchhhhHHHHHHhccc
Confidence            99999999999998853  22222322  45678888777766444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.08  E-value=0.00024  Score=66.84  Aligned_cols=97  Identities=10%  Similarity=-0.000  Sum_probs=61.7

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh--hhhhhhhhhhhhhccCCCCCccceeee
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD--RFEEGAEQFRIDVAQNPNDTEESIWCF  199 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg--~~~eA~~~f~~Al~l~P~d~~~~~~~~  199 (310)
                      .+.+...-+-.+++..+|++.|...+.+.-+++.+..-....-+.+.+..|  .+.+|.-.|+.....-|..+.......
T Consensus       129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A  208 (290)
T PF04733_consen  129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA  208 (290)
T ss_dssp             TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            345666666778888888888888888888888775555544555555555  488888888887666554443222222


Q ss_pred             ehhhhhcChHHHHHhHHHh
Q 021611          200 LCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       200 l~~a~l~~~~eA~~~l~~~  218 (310)
                      .+..++|+++||...+.++
T Consensus       209 ~~~l~~~~~~eAe~~L~~a  227 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEA  227 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHH
Confidence            3344678888888877764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.96  E-value=0.0014  Score=68.67  Aligned_cols=201  Identities=12%  Similarity=0.092  Sum_probs=130.5

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      +..|....++.+.  ..|+..-+-.-.|..++++|+.++|....+..-.+.|++...+--+-.+|..+|++++|+..|++
T Consensus        25 fkkal~~~~kllk--k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~  102 (932)
T KOG2053|consen   25 FKKALAKLGKLLK--KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER  102 (932)
T ss_pred             HHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4457777777887  89999999999999999999999999888888888888888888889999999999999999999


Q ss_pred             hhccCCCCCccceeeeehhhhhcChHHHHHhHH---HhcCCChhhHHHHHH-hhcCCCChHHH-------------HHHh
Q 021611          184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL---EVGRDPRPVMREAYN-MFKGGGDPEKL-------------VAAF  246 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~---~~~~d~~~~~~~a~~-l~~~~~~~e~a-------------l~~~  246 (310)
                      ++..+|+ -+-.+..+++..+.+.+.+-.+...   +.-+..+-.++.+.. .+......+.+             ...+
T Consensus       103 ~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l  181 (932)
T KOG2053|consen  103 ANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL  181 (932)
T ss_pred             HHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence            9999998 4444555566667777655444322   222222212222211 22222222211             1111


Q ss_pred             cCCCCcc-hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHH-HHHhhcccCCcC
Q 021611          247 SSGRENE-YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAAL-AKVHSLCRNWSS  309 (310)
Q Consensus       247 ~~~~~~d-~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l-a~~~~~~~~~~~  309 (310)
                      ......+ ..+.++++ .++..+|.+++|...+..-+...... ...++-+. ..+...+++|..
T Consensus       182 ~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~~~dllk~l~~w~~  244 (932)
T KOG2053|consen  182 EKKGKIESEAEIILYL-LILELQGKYQEALEFLAITLAEKLTS-ANLYLENKKLDLLKLLNRWQE  244 (932)
T ss_pred             ccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhcChHH
Confidence            2111111 22333333 46778999999999996655433222 23444444 666777888853

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.96  E-value=0.00028  Score=43.91  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~  157 (310)
                      +.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3689999999999999999999999999999953

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.95  E-value=0.0029  Score=61.20  Aligned_cols=113  Identities=11%  Similarity=0.010  Sum_probs=84.9

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      .++.|+.+..+.-.  -.+....++..-+.+-...||++.|-....++-++-|++ -.....+..++...|+++.|.+-.
T Consensus        99 ~~~qAEkl~~rnae--~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          99 DFQQAEKLLRRNAE--HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cHHHHHHHHHHhhh--cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            44555555554443  445556677777889999999999999999999995554 566778999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      .++++..|.+++..-...-+..+.|++.+....+.+
T Consensus       177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~  212 (400)
T COG3071         177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK  212 (400)
T ss_pred             HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999987432222233467777777776544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.00039  Score=65.89  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             ccchhhhhhhhcCC-CCchh-HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGG-NNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       104 ~~~a~~~~~~ai~~-~~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +-.|...|++.|.. --||+ ++..|.+|+.+.+.+|+|..|+.|+.+|++++|++..+++.-+.+++.+.++++|+...
T Consensus        97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~  176 (390)
T KOG0551|consen   97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWC  176 (390)
T ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            34566777766542 23454 67899999999999999999999999999999999999999999999999988888888


Q ss_pred             hhhhccCCC
Q 021611          182 RIDVAQNPN  190 (310)
Q Consensus       182 ~~Al~l~P~  190 (310)
                      +..+.++-+
T Consensus       177 ee~~~~d~e  185 (390)
T KOG0551|consen  177 EEGLQIDDE  185 (390)
T ss_pred             hhhhhhhHH
Confidence            877766543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.93  E-value=0.00086  Score=62.51  Aligned_cols=160  Identities=15%  Similarity=0.028  Sum_probs=93.7

Q ss_pred             hhcccchhhhhhhhcCC---CCch-hHHHHHHHhhhhheeccccccchhhhhhccccC-----cch-hhHHHhhccchhh
Q 021611          101 RLFIPSVSGIWDALTGG---NNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQ-KAYLWQRGLSLYY  170 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~---~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-----P~~-~~a~~~~G~a~~~  170 (310)
                      .+.+.+|...|.++...   ..+| .-+.+|...|.++.. +++++|+..|++|+++-     |.. ...+..+|.++..
T Consensus        48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~  126 (282)
T PF14938_consen   48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE  126 (282)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred             HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            33455555555554221   1234 344666666666655 59999999999999983     333 5678889999999


Q ss_pred             h-hhhhhhhhhhhhhhccCCCCCc-cc---eeeee--hhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHH
Q 021611          171 L-DRFEEGAEQFRIDVAQNPNDTE-ES---IWCFL--CEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLV  243 (310)
Q Consensus       171 l-g~~~eA~~~f~~Al~l~P~d~~-~~---~~~~l--~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al  243 (310)
                      . |++++|++.|++|+++-..+.. ..   ....+  ...+++++++|+..+.++.....                    
T Consensus       127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l--------------------  186 (282)
T PF14938_consen  127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL--------------------  186 (282)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC--------------------
T ss_pred             HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh--------------------
Confidence            9 9999999999999986322111 00   00011  11245666666666654321100                    


Q ss_pred             HHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          244 AAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       244 ~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                         ... .........+..++++...|+...|...+++....
T Consensus       187 ---~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  187 ---ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             ---CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             ---cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence               000 01111222345778999999999999999998874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.92  E-value=0.0024  Score=68.19  Aligned_cols=162  Identities=12%  Similarity=-0.002  Sum_probs=106.7

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCc-----chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-----RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-----~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      ....+..+|.++..+|++++|.+.+++++.+..     ....++..+|.++...|++++|...++++..+.+.......+
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            345567889999999999999999999988632     235566779999999999999999999998764322110011


Q ss_pred             ee-------ehhhhhcChHHHHHhHHHhcCC--Chhh-----HHHHHHhhcCCCChHHHHHHhcC--------CCCcchh
Q 021611          198 CF-------LCEAQLYGVDEARNRFLEVGRD--PRPV-----MREAYNMFKGGGDPEKLVAAFSS--------GRENEYF  255 (310)
Q Consensus       198 ~~-------l~~a~l~~~~eA~~~l~~~~~d--~~~~-----~~~a~~l~~~~~~~e~al~~~~~--------~~~~d~~  255 (310)
                      ..       ......|+.++|...+......  ..+.     .......+...|+.+++...+..        ....+..
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a  731 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN  731 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            00       1112356777777776553321  1110     01111233445667666554431        1222345


Q ss_pred             HhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          256 YASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      .++..+|.++..+|+.++|..++.+|++.
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            57778999999999999999999999985

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00052  Score=62.79  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=104.3

Q ss_pred             hheehhhhhhhhhhhc--CCCC---------------------------CCCchhhhhhhhccCCCcccccccccccccC
Q 021611           36 CIFFQFTSMALTQHVL--KPTI---------------------------NPPLYSFHRSLLTSKAPLSVQTHINSLFSTP   86 (310)
Q Consensus        36 ~~~~~~~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (310)
                      |.---|-|+++++-+-  +|+.                           +|---.||--+|+++.|.-=+-.-=.+...-
T Consensus        94 ~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~Wqlsdde  173 (329)
T KOG0545|consen   94 TVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDE  173 (329)
T ss_pred             eeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchH
Confidence            4456688999998762  2222                           5555579999999998865422100000011


Q ss_pred             cccccCCCCccccchh-------cccchhhhhhhhcCC------CCch----------hHHHHHHHhhhhheeccccccc
Q 021611           87 RGHYLQNRAPTFTRRL-------FIPSVSGIWDALTGG------NNNS----------REAVVAIRRGMLLFRQGDVVGS  143 (310)
Q Consensus        87 ~~~~~~~~~~~~~~~~-------~~~~a~~~~~~ai~~------~~~P----------~~~~a~~~rG~~~~~~g~~~eA  143 (310)
                      +.    .+++.+-.+|       -+.+|...|..+|..      +-.|          .....+.|...+++..|+|=++
T Consensus       174 Km----kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev  249 (329)
T KOG0545|consen  174 KM----KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV  249 (329)
T ss_pred             hh----hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH
Confidence            11    1233322222       334455555554321      1233          3346788999999999999999


Q ss_pred             hhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611          144 VAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       144 l~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d  191 (310)
                      +++.+.++..+|++..|++.||.++...=+.+||..+|.++++++|.-
T Consensus       250 leh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  250 LEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999999999999999999999999999999999999999999943

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.90  E-value=0.0005  Score=66.96  Aligned_cols=93  Identities=15%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhhhhhhhhhhhhc----cCCCCCcc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFEEGAEQFRIDVA----QNPNDTEE  194 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~----l~P~d~~~  194 (310)
                      .++-++|+.|.-+|+|+.||..-..-+++.-.+      -.++-++|.++..+|+|+.|++.|++.+.    +...-.++
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            578899999999999999999988888776543      45788999999999999999999998654    33333455


Q ss_pred             ceeeeehhh--hhcChHHHHHhHHH
Q 021611          195 SIWCFLCEA--QLYGVDEARNRFLE  217 (310)
Q Consensus       195 ~~~~~l~~a--~l~~~~eA~~~l~~  217 (310)
                      ...+.++.+  .+..++.|+....+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQR  300 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            455556555  45668888887665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.0048  Score=59.28  Aligned_cols=53  Identities=13%  Similarity=0.151  Sum_probs=28.6

Q ss_pred             hhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       130 rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .|.+++.+|+|++|++.|.-+.+-+.-+.+.+.+++.+.+.+|.|.||...-.
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~  115 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE  115 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence            34555555555555555555555444444555555555555555555554433

>PRK10941 hypothetical protein; Provisional

Probab=96.80  E-value=0.00052  Score=63.96  Aligned_cols=70  Identities=17%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ....++=.++.+.++++.|+...++.+.++|+++.-+..||.++.++|.+..|+.+++..++..|+|+.+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            4455677789999999999999999999999999999999999999999999999999999999999864

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.75  E-value=0.0058  Score=50.10  Aligned_cols=190  Identities=19%  Similarity=0.173  Sum_probs=130.9

Q ss_pred             hhhhhhcCCCCchh--HHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          109 GIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       109 ~~~~~ai~~~~~P~--~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      ..+.....  ..+.  ........+..+...+++..++..+...+.  ..+.....+...|......++++++++.+.++
T Consensus        44 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (291)
T COG0457          44 ELLEEALE--LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA  121 (291)
T ss_pred             HHHHHHHh--cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33344443  4443  478889999999999999999999999998  78999999999999999999999999999999


Q ss_pred             hccCCCCCccceeeee-hhhhhcChHHHHHhHHHhcC-CC--hhhHHHHH---HhhcCCCChHHHHHHhcCC--CCcc-h
Q 021611          185 VAQNPNDTEESIWCFL-CEAQLYGVDEARNRFLEVGR-DP--RPVMREAY---NMFKGGGDPEKLVAAFSSG--RENE-Y  254 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l-~~a~l~~~~eA~~~l~~~~~-d~--~~~~~~a~---~l~~~~~~~e~al~~~~~~--~~~d-~  254 (310)
                      +..++++.....+... +....+++++|...+.+... ++  ........   ..+...+..+.++..+...  ..+. .
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  201 (291)
T COG0457         122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD  201 (291)
T ss_pred             HcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc
Confidence            9998876443333333 45578889999998877522 21  01111111   1122345566666555421  1222 3


Q ss_pred             hHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611          255 FYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS  302 (310)
Q Consensus       255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~  302 (310)
                      ......++..+...|++++|...+.+++.....  .......++....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~  247 (291)
T COG0457         202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLL  247 (291)
T ss_pred             hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHH
Confidence            455667899999999999999999999994322  2234444444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.68  E-value=0.00085  Score=62.01  Aligned_cols=88  Identities=17%  Similarity=0.230  Sum_probs=75.1

Q ss_pred             ccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA  177 (310)
                      +.+|...|...+.  .-|+   -+.++|-+|.+++.+|+|++|...|..+++-.|+.   +++++.+|.+...+|+-++|
T Consensus       157 y~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A  234 (262)
T COG1729         157 YAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA  234 (262)
T ss_pred             HHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence            3445555655565  4454   56999999999999999999999999999999876   57899999999999999999


Q ss_pred             hhhhhhhhccCCCCCc
Q 021611          178 AEQFRIDVAQNPNDTE  193 (310)
Q Consensus       178 ~~~f~~Al~l~P~d~~  193 (310)
                      -..|++.++.-|+.+.
T Consensus       235 ~atl~qv~k~YP~t~a  250 (262)
T COG1729         235 CATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHHHHCCCCHH
Confidence            9999999999997653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.66  E-value=0.0053  Score=56.46  Aligned_cols=168  Identities=15%  Similarity=0.151  Sum_probs=109.4

Q ss_pred             cccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhh-----
Q 021611          103 FIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYL-----  171 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~l-----  171 (310)
                      .+.+|...|.++..  ..|.   ...+.+.++-++.+.|+|++|+..+++-+++.|+++   -+++.+|++++..     
T Consensus        49 n~~~A~~~fe~l~~--~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~  126 (254)
T COG4105          49 NYEEAIKYFEALDS--RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVT  126 (254)
T ss_pred             CHHHHHHHHHHHHH--cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccc
Confidence            46678888888776  6665   458999999999999999999999999999999864   5677889887765     


Q ss_pred             ---hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhc-
Q 021611          172 ---DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFS-  247 (310)
Q Consensus       172 ---g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~-  247 (310)
                         ..-.+|+..|+..+..=||...+.    -+..++   ..+...+..      ..| .+..++...+.+.+|...++ 
T Consensus       127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~----dA~~~i---~~~~d~LA~------~Em-~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         127 RDQSAARAAFAAFKELVQRYPNSRYAP----DAKARI---VKLNDALAG------HEM-AIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCCcchh----hHHHHH---HHHHHHHHH------HHH-HHHHHHHHhcChHHHHHHHHH
Confidence               345678888999999999865310    011111   111111110      001 12223444555555444332 


Q ss_pred             ---C-CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC
Q 021611          248 ---S-GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG  287 (310)
Q Consensus       248 ---~-~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~  287 (310)
                         . ...+....++..+...|..+|-.++|... .+.|+.+++
T Consensus       193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p  235 (254)
T COG4105         193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYP  235 (254)
T ss_pred             HHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCC
Confidence               1 11223456777899999999999999775 556665554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.53  E-value=0.0017  Score=37.74  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             hHHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611          159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN  190 (310)
Q Consensus       159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~  190 (310)
                      .+++.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            34556666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.0011  Score=62.23  Aligned_cols=173  Identities=13%  Similarity=0.088  Sum_probs=114.5

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      +..+..--.  +.+|.+-..+..+|.+|....+|.+|.++|++.-++.|....+.+..+..++..+++.+|+........
T Consensus        29 aI~~l~s~~--Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D  106 (459)
T KOG4340|consen   29 AIQLLGSEL--ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD  106 (459)
T ss_pred             HHHHHHHHH--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence            444443333  488988999999999999999999999999999999999999999999999999999999987554332


Q ss_pred             cCCCCCccceeeeeh-hhhhcChHHHHHhHHHhcC-CChhh-HHHHHHhhcCCCChHHHHHHhcCCCC--cchhHhhhhh
Q 021611          187 QNPNDTEESIWCFLC-EAQLYGVDEARNRFLEVGR-DPRPV-MREAYNMFKGGGDPEKLVAAFSSGRE--NEYFYASLYA  261 (310)
Q Consensus       187 l~P~d~~~~~~~~l~-~a~l~~~~eA~~~l~~~~~-d~~~~-~~~a~~l~~~~~~~e~al~~~~~~~~--~d~~~a~~~l  261 (310)
                      . |+-.+.....-.+ .-..+++..++..+.+... ..... ...+..+|+ .|.+|++++.+....+  +-.....+++
T Consensus       107 ~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYni  184 (459)
T KOG4340|consen  107 N-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNL  184 (459)
T ss_pred             C-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHH
Confidence            1 2110000000000 0022444444444444332 11111 223333444 6788998888763322  1112234579


Q ss_pred             hhhhhhccchhhHHHHHHHhhc
Q 021611          262 GLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       262 G~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ++++.+.|+++.|+++....++
T Consensus       185 ALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  185 ALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHH
Confidence            9999999999999999988887

>smart00028 TPR Tetratricopeptide repeats

Probab=96.41  E-value=0.0008  Score=39.21  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~  157 (310)
                      .+|+.+|.++...|++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999999863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.04  E-value=0.0035  Score=38.27  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             HHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611          160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN  190 (310)
Q Consensus       160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~  190 (310)
                      +++++|.++..+|++++|++.|++.++.-|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666666664

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.95  E-value=0.0029  Score=52.60  Aligned_cols=65  Identities=17%  Similarity=0.077  Sum_probs=51.5

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      ....+...++..+...|++++|+..+++++.++|.+..+|..+-.++...|+..+|++.|+++.+
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34467777788888888999999999999999998888888888888889999888888888743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.92  E-value=0.0015  Score=39.91  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~  157 (310)
                      ++++.+|.++...|++++|++.|+++++..|+.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999973

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.89  E-value=0.005  Score=55.96  Aligned_cols=62  Identities=21%  Similarity=0.335  Sum_probs=56.3

Q ss_pred             hhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          132 MLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       132 ~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      ......|+.+.|.+.|++++++-|.....|+..|....+.|+++.|...|++.++++|.|.-
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            45667899999999999999999999999999999999999999999999999999998854

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.005  Score=58.53  Aligned_cols=98  Identities=14%  Similarity=0.175  Sum_probs=81.4

Q ss_pred             Cchh-HHHHHHHhhhhheeccccccchhhhhhccccCcc----hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          119 NNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR----QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       119 ~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~----~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      -+|. .+.-|-.-|+-|+..++|..|+..|.+.|+-+-.    +...|.||+-+.+.+|+|-.|+.+-.+++.++|.+.-
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence            4553 5677888899999999999999999999998643    3566889999999999999999999999999999988


Q ss_pred             cceeeeehhhhhcChHHHHHhHH
Q 021611          194 ESIWCFLCEAQLYGVDEARNRFL  216 (310)
Q Consensus       194 ~~~~~~l~~a~l~~~~eA~~~l~  216 (310)
                      +++.-..|...+.++++|.....
T Consensus       155 a~~R~Akc~~eLe~~~~a~nw~e  177 (390)
T KOG0551|consen  155 AYIRGAKCLLELERFAEAVNWCE  177 (390)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHh
Confidence            76655567778888776666433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.0088  Score=55.49  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             hhhhhhcCCCCc-hhHHHHHHHhhhhheeccccccchhhhhhc----cccCcc--hhhHHHhhccchhhhhhhhhhhhhh
Q 021611          109 GIWDALTGGNNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKA----IELDPR--QKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       109 ~~~~~ai~~~~~-P~~~~a~~~rG~~~~~~g~~~eAl~~f~kA----l~l~P~--~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +.+++.|.  .+ |.+|.....+|.+.++.||.+.|...|+++    =+++-.  .--.+.+++.++.-.++|.+|...|
T Consensus       198 d~~~~vi~--~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~  275 (366)
T KOG2796|consen  198 DAYHSVIK--YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF  275 (366)
T ss_pred             HHHHHHHH--hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence            44445555  44 678888889999999999999999999944    334432  2455667888888889999999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChhh
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRPV  225 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~~  225 (310)
                      .++++.||.++.+.....+|...+|+...|++.+..+.+ +|.+.
T Consensus       276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999988766677788888999999888877543 55543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.73  E-value=0.0039  Score=62.53  Aligned_cols=111  Identities=17%  Similarity=0.253  Sum_probs=85.1

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      ..+..+......  .-|+.+...+..|..+...|+.++|++.|++++......    .-.+|.+|.++..+++|++|.+.
T Consensus       250 ~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  250 EEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            345555666665  889999999999999999999999999999999755443    34678999999999999999999


Q ss_pred             hhhhhccCCCCCccceeee---ehhhhhcCh-------HHHHHhHHHhc
Q 021611          181 FRIDVAQNPNDTEESIWCF---LCEAQLYGV-------DEARNRFLEVG  219 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~---l~~a~l~~~-------~eA~~~l~~~~  219 (310)
                      |.+..+.+.-.. + ++.+   .|...+++.       ++|...+.++.
T Consensus       328 f~~L~~~s~WSk-a-~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  328 FLRLLKESKWSK-A-FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHhccccHH-H-HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            999999776432 2 2222   233366776       77777776653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.0073  Score=56.03  Aligned_cols=71  Identities=21%  Similarity=0.382  Sum_probs=65.7

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      ++...+.+.+.++.-+++|.+|...|++.++.||.++.+.+++++++..+|+..+|++..+.++++.|...
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            34567788888999999999999999999999999999999999999999999999999999999999653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.60  E-value=0.0019  Score=41.20  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=15.0

Q ss_pred             HHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          161 LWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       161 ~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      +.++|.++..+|+|++|++.|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566666666666666666666443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.55  E-value=0.0046  Score=39.41  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcc
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPR  156 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~  156 (310)
                      +|.++|.++..+|++++|++.|++++.+.++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            5789999999999999999999998776654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.03  Score=53.95  Aligned_cols=143  Identities=13%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             eccccccchhhhhhccccCcchh-hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh--hhhhcChHHHH
Q 021611          136 RQGDVVGSVAEFDKAIELDPRQK-AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEAR  212 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l~P~~~-~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~  212 (310)
                      ...||.+|+..++-.+.++.... ..-...|.+++.+|+|++|+..|.-+..-  +++.+..|.+++  ..-+|.+.||.
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHH
Confidence            34688888888888877765443 44556899999999999999999988774  344444666654  44789999998


Q ss_pred             HhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          213 NRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       213 ~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ....+..+.|-- .+....+--..++-++.+..-.. + .|..+-.+.++-+++-.-.+.+|++.|.+.+.
T Consensus       112 ~~~~ka~k~pL~-~RLlfhlahklndEk~~~~fh~~-L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  112 SIAEKAPKTPLC-IRLLFHLAHKLNDEKRILTFHSS-L-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHhhCCCChHH-HHHHHHHHHHhCcHHHHHHHHHH-H-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            887776554321 11222211112222333322221 1 11222233455555556678888888888887

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.38  E-value=0.0092  Score=56.43  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=66.6

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeee
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF  199 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~  199 (310)
                      +..-.+.+.-..+.|+.+.|...|+.|+.++|++++++..+|.....-.+.-+|-.+|-+|+.++|.+.++..++.
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3444555666677899999999999999999999999999999999999999999999999999999988665543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.061  Score=50.57  Aligned_cols=149  Identities=12%  Similarity=0.066  Sum_probs=91.7

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhh
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  204 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~  204 (310)
                      +.-+..+.-.+..|++.+|...|..+++..|++..+...++.++...|+.++|...+...    |.+.....+..     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~-----  205 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHG-----  205 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHH-----
Confidence            445566777788888888888888888888888888888888888888888877765542    32221101111     


Q ss_pred             hcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          205 LYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       205 l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                         ....++.+.++               ...++..+..+.+.  .+|++..+.+-++..+...|+.++|..++-.-++.
T Consensus       206 ---l~a~i~ll~qa---------------a~~~~~~~l~~~~a--adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         206 ---LQAQIELLEQA---------------AATPEIQDLQRRLA--ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             ---HHHHHHHHHHH---------------hcCCCHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               00111111211               11223333444433  35667777888999999999999999999888885


Q ss_pred             CCCCCChHHHHHHHHHhh
Q 021611          285 PYGQRSDDYMAALAKVHS  302 (310)
Q Consensus       285 ~~~~~s~~~~~~la~~~~  302 (310)
                      +.+-.+......|-.+..
T Consensus       266 d~~~~d~~~Rk~lle~f~  283 (304)
T COG3118         266 DRGFEDGEARKTLLELFE  283 (304)
T ss_pred             cccccCcHHHHHHHHHHH
Confidence            443333444445544433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.011  Score=54.38  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=79.7

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhcccc--------Ccch----------hhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQ----------KAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~----------~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      ...+....|+-++.+|+|.||...|..||..        .|..          ...+.|...+++..|+|=++++.-...
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3578889999999999999999999998743        4543          235678999999999999999999999


Q ss_pred             hccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          185 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +...|.+..+++.++.+.+..=+..||.+++.++
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v  290 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV  290 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            9999999887777766666555678888888774

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.93  E-value=0.015  Score=45.24  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=43.3

Q ss_pred             cchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          142 GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       142 eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      ..++.++++++.+|++..+.+.++..+...|++++|++.+-..++.+|++.
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence            346788899999999999999999999999999999999999999998764

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.93  E-value=0.11  Score=51.96  Aligned_cols=165  Identities=15%  Similarity=0.142  Sum_probs=103.7

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-hhHHHh------hccch---hhhhhhhhhhhhhhhhhccC
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQ------RGLSL---YYLDRFEEGAEQFRIDVAQN  188 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-~~a~~~------~G~a~---~~lg~~~eA~~~f~~Al~l~  188 (310)
                      -||.|+++|+..-...-..|+.+.-.+.|++||.--|-- ..-++.      +-.++   ....+.+-+.+.|+.++++-
T Consensus       317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI  396 (677)
T KOG1915|consen  317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI  396 (677)
T ss_pred             hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            799999999999998889999999999999999988742 121111      11222   34588999999999999999


Q ss_pred             CCCCc--cceeeeehhh--hhcChHHHHHhHHH-hcCCChhhHHHHHHhhc-CCCChHHHHHHhc--CCCCcchhHhhhh
Q 021611          189 PNDTE--ESIWCFLCEA--QLYGVDEARNRFLE-VGRDPRPVMREAYNMFK-GGGDPEKLVAAFS--SGRENEYFYASLY  260 (310)
Q Consensus       189 P~d~~--~~~~~~l~~a--~l~~~~eA~~~l~~-~~~d~~~~~~~a~~l~~-~~~~~e~al~~~~--~~~~~d~~~a~~~  260 (310)
                      |.-.-  +-+|...+..  +..+...|+..+.. ++.-|.+.....|.-+. ..+.++..-..+.  ..-.|+.++++.-
T Consensus       397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k  476 (677)
T KOG1915|consen  397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK  476 (677)
T ss_pred             CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence            97432  3344333332  45667788777655 34444443333332111 1122222222222  1224556666655


Q ss_pred             hhhhhhhccchhhHHHHHHHhhc
Q 021611          261 AGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       261 lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      -|.+-..+|+.|.|+..|.-|+.
T Consensus       477 yaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  477 YAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhc
Confidence            66666677777777777777777

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.83  E-value=0.12  Score=53.11  Aligned_cols=190  Identities=12%  Similarity=0.067  Sum_probs=123.3

Q ss_pred             hhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCc--c---hhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP--R---QKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       110 ~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P--~---~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      .|+++|.  +.=--|..-.|.|+.+-.-.-+++|-..|+|-|.|.|  +   -+..|..+....+.--..+-|...|++|
T Consensus       499 vYdriid--LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  499 VYDRIID--LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             HHHHHHH--HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4455554  3334578888999999999999999999999999985  3   2445556666666667889999999999


Q ss_pred             hccCCCCCccceeeeehhh----hhcChHHHHHhHHHhcCCCh----hhHHH-----HHHhhcCCC---ChHHHHHHhcC
Q 021611          185 VAQNPNDTEESIWCFLCEA----QLYGVDEARNRFLEVGRDPR----PVMRE-----AYNMFKGGG---DPEKLVAAFSS  248 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a----~l~~~~eA~~~l~~~~~d~~----~~~~~-----a~~l~~~~~---~~e~al~~~~~  248 (310)
                      ++..|....-  ..++..+    ..|-...|+..+.++.....    ..|.+     +...|+-..   -++++++.+. 
T Consensus       577 L~~Cpp~~aK--tiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp-  653 (835)
T KOG2047|consen  577 LDGCPPEHAK--TIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP-  653 (835)
T ss_pred             HhcCCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC-
Confidence            9998832211  1223333    23555666666766543221    11212     222233221   2455555532 


Q ss_pred             CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          249 GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       249 ~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                        +.+.....+--+..-...|++|.|+..|.-+-++-.+....++|-+-.....++||
T Consensus       654 --~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  654 --DSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN  709 (835)
T ss_pred             --hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence              11222222224456677899999999999999976677777888888888888887

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.44  E-value=0.016  Score=40.66  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      .+|.+++.++++|+|++|....+.+++++|++..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            5677888888888888888888888888888765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.35  E-value=0.019  Score=57.76  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=74.2

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhhee---ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR---QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~---~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      .++...|.+++.  .-|.....+-+|+.++++   .|+.=.|+.|...|+++||-...+|+.++.++..++++.+|+++.
T Consensus       391 ~~~i~~~s~a~q--~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~  468 (758)
T KOG1310|consen  391 SGAISHYSRAIQ--YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH  468 (758)
T ss_pred             HHHHHHHHHHhh--hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence            346666777777  788888889999888876   467778999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCC
Q 021611          182 RIDVAQNPNDT  192 (310)
Q Consensus       182 ~~Al~l~P~d~  192 (310)
                      ..+....|.|.
T Consensus       469 ~alq~~~Ptd~  479 (758)
T KOG1310|consen  469 WALQMSFPTDV  479 (758)
T ss_pred             HHHhhcCchhh
Confidence            88888888554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.27  E-value=0.043  Score=45.45  Aligned_cols=89  Identities=19%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             HhhhhheeccccccchhhhhhccccC----------------------cchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          129 RRGMLLFRQGDVVGSVAEFDKAIELD----------------------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       129 ~rG~~~~~~g~~~eAl~~f~kAl~l~----------------------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      ..|......|+.+++++.+.+++.+-                      .....+...++..+...|++++|+...++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            33444444555555555555555553                      22233444677778889999999999999999


Q ss_pred             cCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      ++|-+-..+...-.+....|+..+|...+.+
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~  121 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEALRVYER  121 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            9998765433333455588999999887765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=0.018  Score=54.05  Aligned_cols=142  Identities=12%  Similarity=0.017  Sum_probs=88.0

Q ss_pred             hhhhhhccCCCcccccccccccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccc
Q 021611           62 FHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV  141 (310)
Q Consensus        62 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~  141 (310)
                      =|+-+|+...|.+....+-.....+...             .+.++..+++.++.  ..|++.++...++.+++..|+.+
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e-------------~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e  185 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAE-------------DFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVE  185 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhcc-------------chhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChH
Confidence            4566666666664433332222222222             45668899999998  89999999999999999999999


Q ss_pred             cchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc
Q 021611          142 GSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG  219 (310)
Q Consensus       142 eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~  219 (310)
                      +|.+.++..=.-..+. ......+-..+.+.....+ ..++++.+..||+|.+..+-........|+.++|.+.+..+.
T Consensus       186 ~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l  263 (304)
T COG3118         186 AAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL  263 (304)
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9988887632222221 1111111122333333333 246677888999998743322222336789999999877643

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.99  E-value=0.017  Score=40.52  Aligned_cols=41  Identities=10%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG  165 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G  165 (310)
                      +.+|.++..+.++|+|++|....+++++++|++.++..-+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            35788999999999999999999999999999988865443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.91  E-value=0.12  Score=53.13  Aligned_cols=158  Identities=15%  Similarity=0.074  Sum_probs=102.7

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcc--hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      -|.+|...+..++.+|+...--..|++|+.-=|-  +...|-.--.-....|-.+-++..|++.++++|...+.++ -+ 
T Consensus       101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi-e~-  178 (835)
T KOG2047|consen  101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI-EY-  178 (835)
T ss_pred             CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH-HH-
Confidence            4678889999999999999999999999998883  1222211111223345568999999999999998866432 11 


Q ss_pred             hhhhhcChHHHHHhHHHhcCCChh----------hHHHHHHhhcCC------CChHHHHHHhcCCCCcc-hhHhhhhhhh
Q 021611          201 CEAQLYGVDEARNRFLEVGRDPRP----------VMREAYNMFKGG------GDPEKLVAAFSSGRENE-YFYASLYAGL  263 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~~d~~~----------~~~~a~~l~~~~------~~~e~al~~~~~~~~~d-~~~a~~~lG~  263 (310)
                       +...++.+||...+..+-++...          .+.+...+....      .++++.++.-. ..-+| ....+..|+.
T Consensus       179 -L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi-~rftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  179 -LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI-RRFTDQLGFLWCSLAD  256 (835)
T ss_pred             -HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc-ccCcHHHHHHHHHHHH
Confidence             33567889998888775443221          122222222211      12344333321 11122 3445667999


Q ss_pred             hhhhccchhhHHHHHHHhhcC
Q 021611          264 FYESQKKADAAKLHILAACES  284 (310)
Q Consensus       264 ~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      +|-..|++|.|++.|.+++..
T Consensus       257 YYIr~g~~ekarDvyeeai~~  277 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQT  277 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh
Confidence            999999999999999999984

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.90  E-value=0.18  Score=48.88  Aligned_cols=158  Identities=14%  Similarity=0.058  Sum_probs=98.1

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc----
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE----  194 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~----  194 (310)
                      .+++.+++..+-+.-++..++..-...+.+-...     ..++..+|.++.-++-|+.+++.|++|+++.-+..++    
T Consensus        83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941|consen   83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence            4778888888877777777777666666664322     3677789999999999999999999999875443322    


Q ss_pred             ceeeeehhh--hhcChHHHHHhHHH-------hc-CCChhhH--------HHHHHhhcCCCChHHHHHHhc--------C
Q 021611          195 SIWCFLCEA--QLYGVDEARNRFLE-------VG-RDPRPVM--------REAYNMFKGGGDPEKLVAAFS--------S  248 (310)
Q Consensus       195 ~~~~~l~~a--~l~~~~eA~~~l~~-------~~-~d~~~~~--------~~a~~l~~~~~~~e~al~~~~--------~  248 (310)
                      .....++..  ++.++++|.-..-+       +. .|....+        ..++.+.+..|+   |+++++        .
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd---A~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD---AMECCEEAMKLALQH  239 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHh
Confidence            222333332  67777777664333       22 1222111        112223333333   333332        1


Q ss_pred             CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          249 GRENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       249 ~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      +..+-...-..-+|-+|...|+.|.|+.-|++|...
T Consensus       240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            222222333344888999999999999999999874

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.67  E-value=0.082  Score=55.93  Aligned_cols=145  Identities=14%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhH
Q 021611          136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  215 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l  215 (310)
                      ..+++..|++..++.++-.|+-..+..-.|+++.++|++++|..+++..-..-++|....-....+...+++.++|...+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence            44788899999999999999999999999999999999999999888877777877653332334556789999999999


Q ss_pred             HHhcC-CChhhHHHHHHhhcCC---CCh----HHHHHHhcCCCCcchhHhhhhhhhhhhhccchhh---------HHHHH
Q 021611          216 LEVGR-DPRPVMREAYNMFKGG---GDP----EKLVAAFSSGRENEYFYASLYAGLFYESQKKADA---------AKLHI  278 (310)
Q Consensus       216 ~~~~~-d~~~~~~~a~~l~~~~---~~~----e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~---------A~~~~  278 (310)
                      .++.+ .|..  ...+.+|..-   +.+    ..+++.+... +....+.|.....++..+...++         |.+..
T Consensus       101 e~~~~~~P~e--ell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen  101 ERANQKYPSE--ELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHhhCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            88654 4542  2333333321   111    1244444422 22344445556666666655444         44466


Q ss_pred             HHhhc
Q 021611          279 LAACE  283 (310)
Q Consensus       279 ~kAl~  283 (310)
                      .+.++
T Consensus       178 ~~~l~  182 (932)
T KOG2053|consen  178 QKLLE  182 (932)
T ss_pred             HHHhc
Confidence            66666

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.54  E-value=0.052  Score=46.69  Aligned_cols=85  Identities=16%  Similarity=0.042  Sum_probs=75.0

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      ...++....+-...++.+++...++-.--+.|..+..-..-|.++...|+|.+|+..|+...+..|..+.+.+...+|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            46777888888888999999999999999999999999999999999999999999999999999988876666777777


Q ss_pred             hhcCh
Q 021611          204 QLYGV  208 (310)
Q Consensus       204 ~l~~~  208 (310)
                      .+++.
T Consensus        90 ~~~D~   94 (160)
T PF09613_consen   90 ALGDP   94 (160)
T ss_pred             HcCCh
Confidence            66653

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.51  E-value=0.056  Score=53.98  Aligned_cols=134  Identities=14%  Similarity=0.128  Sum_probs=79.2

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhh-ccccCcch--------hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDK-AIELDPRQ--------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~k-Al~l~P~~--------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      +.+.+.+-....+...|+|..|...+.. -|.-.|.+        -..|+|+|.+++++|.|.-+...|.+|++ |   .
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~-N---~  313 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR-N---S  313 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH-H---H
Confidence            4556666666666666666666665544 23333331        22345677777777777777777777665 0   0


Q ss_pred             ccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchh
Q 021611          193 EESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKAD  272 (310)
Q Consensus       193 ~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d  272 (310)
                      -.....       |             -.+++.       +.              ..........|+.|..|...|+.-
T Consensus       314 c~qL~~-------g-------------~~~~~~-------~t--------------ls~nks~eilYNcG~~~Lh~grPl  352 (696)
T KOG2471|consen  314 CSQLRN-------G-------------LKPAKT-------FT--------------LSQNKSMEILYNCGLLYLHSGRPL  352 (696)
T ss_pred             HHHHhc-------c-------------CCCCcc-------ee--------------hhcccchhhHHhhhHHHHhcCCcH
Confidence            000000       0             000100       00              011224556678999999999999


Q ss_pred             hHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611          273 AAKLHILAACESPYGQRSDDYMAALAKVHS  302 (310)
Q Consensus       273 ~A~~~~~kAl~~~~~~~s~~~~~~la~~~~  302 (310)
                      .|+++|.+|+. .++ +++..|-.||..+.
T Consensus       353 ~AfqCf~~av~-vfh-~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  353 LAFQCFQKAVH-VFH-RNPRLWLRLAECCI  380 (696)
T ss_pred             HHHHHHHHHHH-HHh-cCcHHHHHHHHHHH
Confidence            99999999998 443 56788888877654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.26  E-value=0.33  Score=48.57  Aligned_cols=93  Identities=15%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  202 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~  202 (310)
                      +...|+..|..-..++++..|-..|++||..+..+...|...+..-.+.....-|...+++|+.+-|.-..  +|+-...
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq--lWyKY~y  149 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ--LWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH--HHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555553222  3333222


Q ss_pred             h--hhcChHHHHHhHHH
Q 021611          203 A--QLYGVDEARNRFLE  217 (310)
Q Consensus       203 a--~l~~~~eA~~~l~~  217 (310)
                      .  .+|+...|+..+.+
T Consensus       150 mEE~LgNi~gaRqifer  166 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFER  166 (677)
T ss_pred             HHHHhcccHHHHHHHHH
Confidence            2  34555555444433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.26  E-value=0.051  Score=42.22  Aligned_cols=70  Identities=13%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             hhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch--hhHHHhhccchhhhhhhhhhhhhhh
Q 021611          111 WDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ--KAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       111 ~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~--~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ..+.+.  .+|+|..+.+.++..++..|++++|++.+-++++.+|++  ..+.-.+=.++..+|.-+.-+..|+
T Consensus        11 l~~~~a--~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R   82 (90)
T PF14561_consen   11 LEAALA--ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence            445566  899999999999999999999999999999999999986  3333333334444444443333333

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.26  E-value=0.025  Score=52.54  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ..-++=.++.+.++.+.|...-++.+.++|+++.-+..+|.+|.++|-+.-|++++...++.-|+++.+
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            334445578888999999999999999999999999999999999999999999999999999998763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.93  E-value=0.18  Score=49.20  Aligned_cols=148  Identities=11%  Similarity=-0.006  Sum_probs=88.1

Q ss_pred             chhHHHHHHHhhhhhee---ccccccchhhhhh-ccccCcchhhHHHhhccchhhh---------hhhhhhhhhhhhhhc
Q 021611          120 NSREAVVAIRRGMLLFR---QGDVVGSVAEFDK-AIELDPRQKAYLWQRGLSLYYL---------DRFEEGAEQFRIDVA  186 (310)
Q Consensus       120 ~P~~~~a~~~rG~~~~~---~g~~~eAl~~f~k-Al~l~P~~~~a~~~~G~a~~~l---------g~~~eA~~~f~~Al~  186 (310)
                      -++.+.+-+..|.++.+   .|+.++|+..+.. .....+.+++.+--.|.+|-.+         ..+++|++.|+++.+
T Consensus       175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            34566788899999999   9999999999999 5555667788887788776543         458899999999999


Q ss_pred             cCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhh
Q 021611          187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYE  266 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~  266 (310)
                      ++|+.-.+ ++....+...|...+....+.++..       .+-.+....|          ...+....+....+..+..
T Consensus       255 ~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~-------~l~~llg~kg----------~~~~~~dYWd~ATl~Ea~v  316 (374)
T PF13281_consen  255 IEPDYYSG-INAATLLMLAGHDFETSEELRKIGV-------KLSSLLGRKG----------SLEKMQDYWDVATLLEASV  316 (374)
T ss_pred             CCccccch-HHHHHHHHHcCCcccchHHHHHHHH-------HHHHHHHhhc----------cccccccHHHHHHHHHHHH
Confidence            99754321 1111111122322222222222110       0001111111          0111122222333445556


Q ss_pred             hccchhhHHHHHHHhhcCC
Q 021611          267 SQKKADAAKLHILAACESP  285 (310)
Q Consensus       267 ~~G~~d~A~~~~~kAl~~~  285 (310)
                      -.|++++|.+++.++.+..
T Consensus       317 L~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  317 LAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             HcCCHHHHHHHHHHHhhcC
Confidence            6899999999999999854

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.89  E-value=0.27  Score=54.48  Aligned_cols=55  Identities=11%  Similarity=0.090  Sum_probs=39.7

Q ss_pred             ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc-cCCCC
Q 021611          137 QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA-QNPND  191 (310)
Q Consensus       137 ~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~-l~P~d  191 (310)
                      .++-.+..+||++-+.-+|+..-.|.+.=--+..+++.++|.+.+++||. +|+..
T Consensus      1437 l~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE 1492 (1710)
T KOG1070|consen 1437 LSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE 1492 (1710)
T ss_pred             cccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch
Confidence            34455677788888888888777777655566777888888888888876 55544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.32  E-value=0.085  Score=43.43  Aligned_cols=97  Identities=18%  Similarity=0.060  Sum_probs=56.6

Q ss_pred             hhhhhhhhhhhhhhhhhhccCCCCCc------------cceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcC
Q 021611          168 LYYLDRFEEGAEQFRIDVAQNPNDTE------------ESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKG  235 (310)
Q Consensus       168 ~~~lg~~~eA~~~f~~Al~l~P~d~~------------~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~  235 (310)
                      .+.-|-|++|...+++|+++...-|.            ++++..-+...+|+++|++....+           +..+|+.
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~-----------aL~YFNR   87 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR-----------ALRYFNR   87 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-----------HHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH-----------HHHHHhh
Confidence            34457899999999999876433221            111111122367888888776553           3445654


Q ss_pred             CCChHHHHHHhcCCCCcchhH-hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          236 GGDPEKLVAAFSSGRENEYFY-ASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       236 ~~~~e~al~~~~~~~~~d~~~-a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      .|...+-        .+..+. +-+..+..+...|+.++|+..|+.+.+
T Consensus        88 RGEL~qd--------eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   88 RGELHQD--------EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             H--TTST--------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccccc--------cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4432110        111222 445688999999999999999999987

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.32  E-value=0.062  Score=49.00  Aligned_cols=57  Identities=16%  Similarity=0.210  Sum_probs=52.4

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ  157 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~  157 (310)
                      .+.+..+.+.++|+++++  +-|....-|+.+|...-..|+++.|...|+++++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344567789999999999  999999999999999999999999999999999999976

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.10  E-value=0.093  Score=43.22  Aligned_cols=66  Identities=23%  Similarity=0.231  Sum_probs=51.2

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccc-------cCcch----hhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-------LDPRQ----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~-------l~P~~----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      -++..|-.++-++..+|+|++++..-++++.       |+.+.    ..+.+++|.++..+|+.+||+..|+.+.+.
T Consensus        53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3567778888899999999999887777764       44443    245668999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.50  E-value=0.44  Score=43.98  Aligned_cols=169  Identities=14%  Similarity=0.016  Sum_probs=98.7

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcc-----h-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCC--CCccc
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-----Q-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN--DTEES  195 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-----~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~--d~~~~  195 (310)
                      +..|..-+.++...++|+.|-..+.+|++-.-+     + ..++-+-|...-.+..+.|++..|++|..+--.  .+++ 
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt-  109 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT-  109 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch-
Confidence            356667777888889999999999999854332     2 455667778888889999999999999875222  2221 


Q ss_pred             eeeeehhh----hhcChHHHHHhHHHh----cCCChh-----hHHHHHHhhcCCCChHHH-HHHhcCC-------CCcch
Q 021611          196 IWCFLCEA----QLYGVDEARNRFLEV----GRDPRP-----VMREAYNMFKGGGDPEKL-VAAFSSG-------RENEY  254 (310)
Q Consensus       196 ~~~~l~~a----~l~~~~eA~~~l~~~----~~d~~~-----~~~~a~~l~~~~~~~e~a-l~~~~~~-------~~~d~  254 (310)
                      +-..+..+    ...++++|+..+++.    ..+.+.     ..+.+...+-...+++++ .......       .-++.
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            11111111    234577777776652    222222     222222333333344443 2222211       11223


Q ss_pred             hHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHH
Q 021611          255 FYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDY  293 (310)
Q Consensus       255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~  293 (310)
                      ..+...+-++|....++..|...|+....++..+.|.+-
T Consensus       190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~  228 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS  228 (308)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence            333333345666677999999999998887666666554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.27  E-value=0.36  Score=48.49  Aligned_cols=103  Identities=17%  Similarity=0.050  Sum_probs=61.6

Q ss_pred             hcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcc-------------------------hhhHHHhhccch
Q 021611          114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-------------------------QKAYLWQRGLSL  168 (310)
Q Consensus       114 ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-------------------------~~~a~~~~G~a~  168 (310)
                      ++.  ++|+.+.+|+-++.-..  .-..||++.|.++++....                         ..-+...+|.+.
T Consensus       194 ALe--i~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCa  269 (539)
T PF04184_consen  194 ALE--INPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCA  269 (539)
T ss_pred             HHH--hhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHH
Confidence            455  88888888887765321  1233455555554443210                         012233567778


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC
Q 021611          169 YYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR  220 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~  220 (310)
                      .++|+.+||++.|+..++.+|.+..-.+...+...  .++.+.++.+.+.+-+.
T Consensus       270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            88889999999998888888764332233333333  56778888777776543

The molecular function of this protein is uncertain.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.17  E-value=0.16  Score=51.91  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=66.5

Q ss_pred             hhhhhhhhcCCCCchh-HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          107 VSGIWDALTGGNNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      |..+...++.  ..|. ......+++.+.+..|-..+|-..+.+++.++...+-.++..|.+++.+.+.+.|++.|+.|+
T Consensus       626 a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~  703 (886)
T KOG4507|consen  626 AIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQAL  703 (886)
T ss_pred             HHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence            3344444443  4553 335667888888888888889889999988887777888889999999999999999999999


Q ss_pred             ccCCCCCc
Q 021611          186 AQNPNDTE  193 (310)
Q Consensus       186 ~l~P~d~~  193 (310)
                      +++|++++
T Consensus       704 ~~~~~~~~  711 (886)
T KOG4507|consen  704 KLTTKCPE  711 (886)
T ss_pred             hcCCCChh
Confidence            99998875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.16  E-value=0.18  Score=50.57  Aligned_cols=120  Identities=12%  Similarity=0.122  Sum_probs=79.4

Q ss_pred             eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc---ee-eeehhhhhcChHHH
Q 021611          136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES---IW-CFLCEAQLYGVDEA  211 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~---~~-~~l~~a~l~~~~eA  211 (310)
                      .....+.|.+..++..+..|+..-..+..|.++...|+.++|++.|++++....+-+...   .| ...+...+.++++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            345667889999999999999999999999999999999999999999995443322110   00 11222345666666


Q ss_pred             HHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccch-------hhHHHHHHHhhc
Q 021611          212 RNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKA-------DAAKLHILAACE  283 (310)
Q Consensus       212 ~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~-------d~A~~~~~kAl~  283 (310)
                      ...+.++....+  +                          ....-.|..|.++...|+.       ++|...|+++-.
T Consensus       325 ~~~f~~L~~~s~--W--------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  325 AEYFLRLLKESK--W--------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHhccc--c--------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            666554322110  0                          0111133466777777777       788888887766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.16  E-value=0.1  Score=33.13  Aligned_cols=29  Identities=17%  Similarity=0.100  Sum_probs=22.8

Q ss_pred             hHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      .++.++|.++...|++++|+..+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45678888888888888888888888775

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.09  E-value=0.061  Score=34.23  Aligned_cols=31  Identities=16%  Similarity=0.125  Sum_probs=26.9

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccC
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD  154 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~  154 (310)
                      +.++.++|.+|..+|++++|+..+++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999998764

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.60  E-value=1.9  Score=38.03  Aligned_cols=52  Identities=12%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             hhcCCCChHHHHHHhcC---CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          232 MFKGGGDPEKLVAAFSS---GRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       232 l~~~~~~~e~al~~~~~---~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ++...|.++++.+..+.   ..++=...+.-.||+.-.+.|++..|.+.|.+...
T Consensus       141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            56668889988777652   22333555666799999999999999999999887

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.54  E-value=0.18  Score=46.84  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=23.8

Q ss_pred             cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       140 ~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +.+|.=.|+.--+--|--+.....++.++..+|||+||...++.++.-+++|++
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe  242 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE  242 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence            334444444433322222334444444444444444444444444444444444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=89.88  E-value=0.12  Score=48.23  Aligned_cols=107  Identities=11%  Similarity=0.199  Sum_probs=71.3

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhhee-ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~-~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..+-..|.++..  ..+-....|...+..... .++.+.|...|+++++..|.+...|..-..-+..+|+.+.|...|++
T Consensus        18 ~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer   95 (280)
T PF05843_consen   18 EAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER   95 (280)
T ss_dssp             HHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            345566666664  445567888888888666 56666689999999888888888888777778888888899999999


Q ss_pred             hhccCCCCC-ccceeeeehhh--hhcChHHHHH
Q 021611          184 DVAQNPNDT-EESIWCFLCEA--QLYGVDEARN  213 (310)
Q Consensus       184 Al~l~P~d~-~~~~~~~l~~a--~l~~~~eA~~  213 (310)
                      ++..-|.+. ...+|......  +.|+.+....
T Consensus        96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~  128 (280)
T PF05843_consen   96 AISSLPKEKQSKKIWKKFIEFESKYGDLESVRK  128 (280)
T ss_dssp             HCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            888877655 33455443333  4455544443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.47  E-value=1.3  Score=43.62  Aligned_cols=178  Identities=14%  Similarity=0.096  Sum_probs=107.7

Q ss_pred             hhcccchhhhhhhhcCC-CCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGG-NNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF  174 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~-~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~  174 (310)
                      .+.+.++..+.|+..+. -+.|+     .+..+-.+++.+.. -+...|.++-.++.+|.|++..+-..-+.++++.|+.
T Consensus       201 ~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~  279 (531)
T COG3898         201 AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL  279 (531)
T ss_pred             cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence            34566666666653221 12222     23444445555444 5688999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH------hcCCChhh-HHHHHHhhcCCCChHHHHHHhc
Q 021611          175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE------VGRDPRPV-MREAYNMFKGGGDPEKLVAAFS  247 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~------~~~d~~~~-~~~a~~l~~~~~~~e~al~~~~  247 (310)
                      -++-..++.+.+.+|+ |.  +|.....++.|+.  +++++++      +.++..+. +..+-..+. .+++-.+....+
T Consensus       280 rKg~~ilE~aWK~ePH-P~--ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e~~~ARa~Ae  353 (531)
T COG3898         280 RKGSKILETAWKAEPH-PD--IALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGEFSAARAKAE  353 (531)
T ss_pred             hhhhhHHHHHHhcCCC-hH--HHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccchHHHHHHHH
Confidence            9999999999999985 43  4554445555553  2233222      33332221 111111222 233333322222


Q ss_pred             CCCC-cchhHhhhhhhhhhhhc-cchhhHHHHHHHhhcCC
Q 021611          248 SGRE-NEYFYASLYAGLFYESQ-KKADAAKLHILAACESP  285 (310)
Q Consensus       248 ~~~~-~d~~~a~~~lG~~~~~~-G~~d~A~~~~~kAl~~~  285 (310)
                      .... .+...++..++.+-+.. |+.++.++.+.++++-+
T Consensus       354 aa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         354 AAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             HHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            1111 11222344566666555 99999999999999954

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.47  E-value=1.2  Score=49.65  Aligned_cols=50  Identities=10%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc-cCc
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDP  155 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~-l~P  155 (310)
                      .|+..+-+.+.+.  .+||++..|+..=.-.+.+++.++|.+.+++||. +++
T Consensus      1440 ~pesaeDferlvr--ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~ 1490 (1710)
T KOG1070|consen 1440 APESAEDFERLVR--SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF 1490 (1710)
T ss_pred             CCcCHHHHHHHHh--cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc
Confidence            3445566677776  8999999999999999999999999999999986 444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.08  E-value=0.077  Score=53.04  Aligned_cols=84  Identities=20%  Similarity=0.262  Sum_probs=67.3

Q ss_pred             CCchh--HHHHHHHhhhhheeccccccchhhhhhccc---------cCc---------chhhHHHhhccchhhhhhhhhh
Q 021611          118 NNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIE---------LDP---------RQKAYLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       118 ~~~P~--~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~---------l~P---------~~~~a~~~~G~a~~~lg~~~eA  177 (310)
                      .+.|.  .-..|.++|-+.++.|.|.-++..|.+|++         +.|         ..-...||.|+.+...||.-+|
T Consensus       275 ~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~A  354 (696)
T KOG2471|consen  275 TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLA  354 (696)
T ss_pred             cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHH
Confidence            44554  336789999999999999999999999996         222         2345789999999999999999


Q ss_pred             hhhhhhhhccCCCCCccceeeeehhh
Q 021611          178 AEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       178 ~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      .++|.+++..--.+|.  +|..++..
T Consensus       355 fqCf~~av~vfh~nPr--lWLRlAEc  378 (696)
T KOG2471|consen  355 FQCFQKAVHVFHRNPR--LWLRLAEC  378 (696)
T ss_pred             HHHHHHHHHHHhcCcH--HHHHHHHH
Confidence            9999999987655554  78776554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=89.07  E-value=0.15  Score=47.67  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh-hhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l-g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      .+|+.......+.+..++|-..|.+|++-.+.....|...+.+.+.. ++.+-|.+.|+.+++.-|++..  +|......
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~--~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD--FWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHH
Confidence            46888888888888899999999999977777788899999997775 5555599999999999998876  55443332


Q ss_pred             --hhcChHHHHHhHHHhcC
Q 021611          204 --QLYGVDEARNRFLEVGR  220 (310)
Q Consensus       204 --~l~~~~eA~~~l~~~~~  220 (310)
                        ..++.+.++..|++...
T Consensus        80 l~~~~d~~~aR~lfer~i~   98 (280)
T PF05843_consen   80 LIKLNDINNARALFERAIS   98 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCC
T ss_pred             HHHhCcHHHHHHHHHHHHH
Confidence              67889999999988543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.17  E-value=0.15  Score=39.61  Aligned_cols=58  Identities=10%  Similarity=0.130  Sum_probs=44.4

Q ss_pred             hheeccccccchhhhhhccccCcc---------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611          133 LLFRQGDVVGSVAEFDKAIELDPR---------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN  190 (310)
Q Consensus       133 ~~~~~g~~~eAl~~f~kAl~l~P~---------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~  190 (310)
                      -.++.|+|.+|++.+.+.+.....         ...+..++|.++...|++++|+..+++++++...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345678999997776666554322         2467788999999999999999999999987543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=88.09  E-value=0.37  Score=48.80  Aligned_cols=97  Identities=14%  Similarity=0.063  Sum_probs=78.5

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh---hhhhhhhhhhhhhhccCCCCCcccee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL---DRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l---g~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      |.+.+-+..-|+--+..+....|+.+|.++++.-|+....+-+++.++.+.   |+-=.|+.+-..|+++||-...+++|
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence            455666677777777788889999999999999999888888998887765   56667888888999999977666666


Q ss_pred             eeehhhhhcChHHHHHhHHH
Q 021611          198 CFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       198 ~~l~~a~l~~~~eA~~~l~~  217 (310)
                      .+.++.+++++.||+.+...
T Consensus       451 la~aL~el~r~~eal~~~~a  470 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWA  470 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHH
Confidence            66666689999999987544

>PRK10941 hypothetical protein; Provisional

Probab=88.00  E-value=0.15  Score=47.50  Aligned_cols=59  Identities=12%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR  164 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~  164 (310)
                      +..|....+.++.  ++|+++.-+-.||.+|.++|.+..|+.|++.-++..|+++.+-.-+
T Consensus       197 ~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        197 MELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            3344455555566  9999999999999999999999999999999999999998875433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.70  E-value=0.49  Score=27.72  Aligned_cols=24  Identities=21%  Similarity=0.054  Sum_probs=21.1

Q ss_pred             hhhhhhhhhhhccchhhHHHHHHH
Q 021611          257 ASLYAGLFYESQKKADAAKLHILA  280 (310)
Q Consensus       257 a~~~lG~~~~~~G~~d~A~~~~~k  280 (310)
                      +++.+|..+..+|+.++|+..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567899999999999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=87.35  E-value=0.35  Score=46.53  Aligned_cols=72  Identities=14%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      .-...+.+.+.+-+..+.+..|+..-..+++.+|....++|.+|..+..+.++++|++++..+...+|+|..
T Consensus       273 ~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~  344 (372)
T KOG0546|consen  273 LRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA  344 (372)
T ss_pred             cccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence            344666778889999999999999999999999999999999999999999999999999999999999865

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.33  E-value=0.38  Score=30.85  Aligned_cols=33  Identities=15%  Similarity=0.370  Sum_probs=22.0

Q ss_pred             hHHHhhccchhhhhhhhhhhhh--hhhhhccCCCC
Q 021611          159 AYLWQRGLSLYYLDRFEEGAEQ--FRIDVAQNPND  191 (310)
Q Consensus       159 ~a~~~~G~a~~~lg~~~eA~~~--f~~Al~l~P~d  191 (310)
                      +.++..|..++..|++++|++.  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3566677777888888888888  44666666653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.30  E-value=1.3  Score=47.26  Aligned_cols=29  Identities=17%  Similarity=0.008  Sum_probs=24.9

Q ss_pred             hHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          255 FYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ..|.|.+|..|+..|+..+|+..|.+|-.
T Consensus       967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  967 KAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            44677899999999999999999988755

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=87.22  E-value=0.53  Score=44.85  Aligned_cols=159  Identities=13%  Similarity=0.074  Sum_probs=94.7

Q ss_pred             hhhhhcCCCCchhHHHHHHHhhhhheeccc------------cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhh
Q 021611          110 IWDALTGGNNNSREAVVAIRRGMLLFRQGD------------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       110 ~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~------------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA  177 (310)
                      .+++.+.  .+|.|..+|..+....-..-.            .+.-+..+++||+.+|++...+..+=.+..+..+-++.
T Consensus         7 el~~~v~--~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    7 ELNRRVR--ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHH--hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3556666  789999999888765544433            34567789999999998877776655555666777888


Q ss_pred             hhhhhhhhccCCCCCccceeeeehhhhhc-----ChHHHHHhHHHhcCCChhhHHHHHHhhcCC-CChHHHHHHhcCCCC
Q 021611          178 AEQFRIDVAQNPNDTEESIWCFLCEAQLY-----GVDEARNRFLEVGRDPRPVMREAYNMFKGG-GDPEKLVAAFSSGRE  251 (310)
Q Consensus       178 ~~~f~~Al~l~P~d~~~~~~~~l~~a~l~-----~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~-~~~e~al~~~~~~~~  251 (310)
                      .+.+++++..+|+++.  +|.......++     .+.+.+..+.+.           ...+... ...   .........
T Consensus        85 ~~~we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~~-----------l~~L~~~~~~~---~~~~~~~~~  148 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEKC-----------LRALSRRRSGR---MTSHPDLPE  148 (321)
T ss_pred             HHHHHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHHH-----------HHHHHHhhccc---cccccchhh
Confidence            8899999999998765  67654443332     233333333321           0000000 000   000000001


Q ss_pred             cchh--HhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611          252 NEYF--YASLYAGLFYESQKKADAAKLHILAACESPY  286 (310)
Q Consensus       252 ~d~~--~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~  286 (310)
                      .+..  +....+.....+.|-.+.|+..++..++.+.
T Consensus       149 ~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  149 LEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            1111  1222244567788999999999999999654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.19  E-value=0.3  Score=28.68  Aligned_cols=23  Identities=13%  Similarity=0.008  Sum_probs=12.1

Q ss_pred             HHHhhccchhhhhhhhhhhhhhh
Q 021611          160 YLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       160 a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44455555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=87.16  E-value=0.41  Score=40.24  Aligned_cols=71  Identities=14%  Similarity=0.288  Sum_probs=58.7

Q ss_pred             HHHHHHhhhhheecc---ccccchhhhhhccc-cCcch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          124 AVVAIRRGMLLFRQG---DVVGSVAEFDKAIE-LDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g---~~~eAl~~f~kAl~-l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ....+++++++....   +..+.|..++..++ -.|.. -...|.++..++++++|+.++...+..++.+|++.++
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            456678888877754   45678999999997 56654 6788899999999999999999999999999998763

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.08  E-value=0.14  Score=33.31  Aligned_cols=28  Identities=14%  Similarity=0.081  Sum_probs=16.3

Q ss_pred             HHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      .|..+|-+-...++|++|+++|++|+++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555556666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=86.76  E-value=0.34  Score=46.13  Aligned_cols=64  Identities=13%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL  168 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~  168 (310)
                      -.+.|..++.-++.  +.|++++++...|...-.-++.-+|-.+|-+|+.++|.+.+++.+|....
T Consensus       131 k~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  131 KLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             chHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            45567777877887  99999999999999999999999999999999999999999999988654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.62  E-value=4.6  Score=36.09  Aligned_cols=114  Identities=13%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             cchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          142 GSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       142 eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +.+....+-+.-+|..   .-+-..++..+...|++++|+..++.++..-. |..   ...+...               
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~---lk~l~~l---------------  130 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DEN---LKALAAL---------------  130 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHH---HHHHHHH---------------
Confidence            4444444444445433   12334567777777888888888887775433 221   0000000               


Q ss_pred             cCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHh--hhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          219 GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYA--SLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       219 ~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a--~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                               ++..+....+.++++++.+...... .+.+  .-..|-++..+|+-++|+..|.+|+++
T Consensus       131 ---------RLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         131 ---------RLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             ---------HHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence                     1112233355666666666532221 1222  235899999999999999999999995

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.36  E-value=0.34  Score=31.52  Aligned_cols=29  Identities=17%  Similarity=0.307  Sum_probs=26.1

Q ss_pred             HHHHHhhhhheeccccccchhhhhhcccc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIEL  153 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l  153 (310)
                      +.|..+|.+-+..++|++|+++|.+++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57888999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.30  E-value=0.44  Score=40.59  Aligned_cols=83  Identities=19%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhh
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  204 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~  204 (310)
                      ......-.+-+..++++++....+..--+.|+.+.....-|.++...|+|+||+..|+...+-.+..+.+......|+.-
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34444445555589999999999999999999999999999999999999999999999999888777655555566665


Q ss_pred             hcC
Q 021611          205 LYG  207 (310)
Q Consensus       205 l~~  207 (310)
                      +|+
T Consensus        91 l~D   93 (153)
T TIGR02561        91 KGD   93 (153)
T ss_pred             cCC
Confidence            555

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.09  E-value=1.6  Score=43.98  Aligned_cols=47  Identities=15%  Similarity=0.173  Sum_probs=24.4

Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          169 YYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      .+..+.+.-++.-++|++++|+.+.++.  .|+.-......|+.+.+++
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYI--LLAEEeA~Ti~Eae~l~rq  225 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYI--LLAEEEASTIVEAEELLRQ  225 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHh--hcccccccCHHHHHHHHHH
Confidence            3445566666677777777776665322  3333222334445444443

The molecular function of this protein is uncertain.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.88  E-value=0.32  Score=51.02  Aligned_cols=140  Identities=16%  Similarity=0.143  Sum_probs=93.2

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--  203 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--  203 (310)
                      .|-..+.-|...|+|+-|.+.|.++=..    ..+.-    .|.+.|+|++|.+.-.++..  |.+.   .-.+++.+  
T Consensus       767 yy~~iadhyan~~dfe~ae~lf~e~~~~----~dai~----my~k~~kw~da~kla~e~~~--~e~t---~~~yiakaed  833 (1636)
T KOG3616|consen  767 YYGEIADHYANKGDFEIAEELFTEADLF----KDAID----MYGKAGKWEDAFKLAEECHG--PEAT---ISLYIAKAED  833 (1636)
T ss_pred             cchHHHHHhccchhHHHHHHHHHhcchh----HHHHH----HHhccccHHHHHHHHHHhcC--chhH---HHHHHHhHHh
Confidence            3445577788899999999999876322    23332    34566899888777666543  3333   22333333  


Q ss_pred             --hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611          204 --QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAA  281 (310)
Q Consensus       204 --~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kA  281 (310)
                        ..|++.||...+..+.. |.    .+..+|...|.++++++....--.......|...|.-++..|+...|..+|-+|
T Consensus       834 ldehgkf~eaeqlyiti~~-p~----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  834 LDEHGKFAEAEQLYITIGE-PD----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             HHhhcchhhhhheeEEccC-ch----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence              46788888777665432 11    455678888888888888763222223345667899999999999999999887


Q ss_pred             hc
Q 021611          282 CE  283 (310)
Q Consensus       282 l~  283 (310)
                      -+
T Consensus       909 ~d  910 (1636)
T KOG3616|consen  909 GD  910 (1636)
T ss_pred             hh
Confidence            66

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.48  E-value=0.48  Score=44.13  Aligned_cols=74  Identities=11%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc-cCCCCC
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA-QNPNDT  192 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~-l~P~d~  192 (310)
                      .-|-.+.....++.+.+.+|||+||......|+.-+|+++..+.|+-.+-..+|.-.++.+.+-.-++ ..|+++
T Consensus       202 k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  202 KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            35566788889999999999999999999999999999999999999999999999999887655554 456554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.12  E-value=2  Score=44.04  Aligned_cols=156  Identities=16%  Similarity=0.097  Sum_probs=84.8

Q ss_pred             hHHHHHHHhhhhheec-----cccccchhhhhhccc-------cCcchhhHHHhhccchhhhh-----hhhhhhhhhhhh
Q 021611          122 REAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIE-------LDPRQKAYLWQRGLSLYYLD-----RFEEGAEQFRID  184 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~-----g~~~eAl~~f~kAl~-------l~P~~~~a~~~~G~a~~~lg-----~~~eA~~~f~~A  184 (310)
                      .+..+.+.+|.++..-     .|.+.|+..|.++.+       ..  .+.+.+.+|.+|..-.     +++.|+..|.++
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a  319 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA  319 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence            3456667777776653     688899999998877       22  3446667777766642     678899999999


Q ss_pred             hccCCCCCccceeeeehhhh---h--cChHHHHHhHHHhcC-CChhhH-HHHHHhhcCCC---ChHHHHHHhcCCCCcch
Q 021611          185 VAQNPNDTEESIWCFLCEAQ---L--YGVDEARNRFLEVGR-DPRPVM-REAYNMFKGGG---DPEKLVAAFSSGRENEY  254 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a~---l--~~~~eA~~~l~~~~~-d~~~~~-~~a~~l~~~~~---~~e~al~~~~~~~~~d~  254 (310)
                      .+....+..  +  .++...   .  .+...|...+..+.. ...+.+ ..+.-+..+.|   +.+.+...+...-....
T Consensus       320 A~~g~~~a~--~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  320 AELGNPDAQ--Y--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             HhcCCchHH--H--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            988764432  2  222221   1  234566666655432 222222 22221222222   24445554443222223


Q ss_pred             hHhhhhhhhhhhhc-cchhhHHHHHHHhhc
Q 021611          255 FYASLYAGLFYESQ-KKADAAKLHILAACE  283 (310)
Q Consensus       255 ~~a~~~lG~~~~~~-G~~d~A~~~~~kAl~  283 (310)
                      ..+.+.++.+++.- ++.+.+.-.+....+
T Consensus       396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  396 PSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             hhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence            34444555544322 666666666665555

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=85.02  E-value=1.2  Score=45.58  Aligned_cols=77  Identities=10%  Similarity=-0.003  Sum_probs=65.5

Q ss_pred             CCchhHHHHHHH--hhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh-hhccCCCCCcc
Q 021611          118 NNNSREAVVAIR--RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI-DVAQNPNDTEE  194 (310)
Q Consensus       118 ~~~P~~~~a~~~--rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~-Al~l~P~d~~~  194 (310)
                      .++|.++..+..  +...+...++...+...++.++..+|++..++.++|.++...|....++..+.. +.+..|++.+.
T Consensus        59 ~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~  138 (620)
T COG3914          59 AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF  138 (620)
T ss_pred             ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence            366666655433  588889999999999999999999999999999999999999998888888877 89999988764

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.77  E-value=0.26  Score=45.89  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=85.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheec-cccccchhhhhhccccCcchhhHHHhhccchhhhhhhh-hhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE-EGAEQ  180 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~-g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~-eA~~~  180 (310)
                      .++.|..+...+|.  +||.++..|..|-.++..+ .+..+-++.+++.++-+|++.+.|-.|-.+...+|+.. .=++.
T Consensus        58 ~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef  135 (318)
T KOG0530|consen   58 KSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF  135 (318)
T ss_pred             cCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence            46667777777888  9999999999888877764 46677888999999999999999999999999999887 77888


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      .+.++..+.++-+++-++--+..-.+.++.-++...+
T Consensus       136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~  172 (318)
T KOG0530|consen  136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE  172 (318)
T ss_pred             HHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            8889988887766332222333345666666555443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.21  E-value=0.75  Score=41.43  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=54.4

Q ss_pred             hHHHHHHHhhhhheeccc-------cccchhhhhhccccCcc------hhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611          122 REAVVAIRRGMLLFRQGD-------VVGSVAEFDKAIELDPR------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN  188 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~-------~~eAl~~f~kAl~l~P~------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~  188 (310)
                      .-+..+..++++|..+|+       +..|++.|.+|++-...      .....+..|.+..++|++++|+..|.+.+...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            456888888999999999       44677777777766532      25677889999999999999999999998654


Q ss_pred             C
Q 021611          189 P  189 (310)
Q Consensus       189 P  189 (310)
                      .
T Consensus       196 ~  196 (214)
T PF09986_consen  196 K  196 (214)
T ss_pred             C
Confidence            3

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.84  E-value=0.46  Score=40.94  Aligned_cols=69  Identities=19%  Similarity=0.092  Sum_probs=58.4

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF  174 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~  174 (310)
                      ..++..+.+.+-.  +.|+.++.-..-|+.++..|++.+|+..|+.+.+-.|.++.+--.++.+++.+|+.
T Consensus        26 ~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   26 PDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             hHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            4456677766666  89999999999999999999999999999999999999887766778888777664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=83.54  E-value=0.83  Score=48.59  Aligned_cols=27  Identities=26%  Similarity=0.186  Sum_probs=23.2

Q ss_pred             hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          257 ASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       257 a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      .+-|-|.+++.+|++|.|+.+|..|-.
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhhh
Confidence            345789999999999999999998865

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=82.92  E-value=6.5  Score=38.83  Aligned_cols=49  Identities=10%  Similarity=-0.016  Sum_probs=28.7

Q ss_pred             eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      ++|+.+.|..+-++|-+.-|.-++++...=......|+|++|++..+..
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~  214 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ  214 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            4566666666666666666666555544444445556666666655543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=81.61  E-value=0.45  Score=45.32  Aligned_cols=79  Identities=10%  Similarity=0.127  Sum_probs=62.9

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHh-hccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ-RGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~-~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      .-|+++..|.....--...|-|.+--..|.++++.+|.+...|.. -..-+...++++.+...|.+++++||+.|.  +|
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~--iw  179 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR--IW  179 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch--HH
Confidence            456667777777766667777788888899999999999988877 556667779999999999999999998876  55


Q ss_pred             ee
Q 021611          198 CF  199 (310)
Q Consensus       198 ~~  199 (310)
                      ..
T Consensus       180 ~e  181 (435)
T COG5191         180 IE  181 (435)
T ss_pred             HH
Confidence            43

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=80.90  E-value=1.1  Score=42.10  Aligned_cols=66  Identities=14%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      ....++..+...+...|+++.+++.+++.++++|-+...|..+=.+++..|+...|+..|++.-+.
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            345677888888899999999999999999999998888888888889999999999988887664

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.74  E-value=1.8  Score=40.09  Aligned_cols=63  Identities=16%  Similarity=0.138  Sum_probs=27.1

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccC-----cchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-----P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      .++-.-|+..-....+.|++..|+||..+-     |+-...-..++-=..+--+.++|+..|++++.+
T Consensus        72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen   72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV  139 (308)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            344444444444555555555555554442     222222223332233334455555555554443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.17  E-value=1.5  Score=42.44  Aligned_cols=66  Identities=15%  Similarity=0.033  Sum_probs=54.2

Q ss_pred             chhHHHHHH---HhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          120 NSREAVVAI---RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       120 ~P~~~~a~~---~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      ||+-|-.-|   ..+..+...|-|++|.+.-++++++||.+.++...++-++...||+.|+++...+.-
T Consensus       168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            555543333   344567788999999999999999999999999999999999999999999877653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=80.15  E-value=1  Score=43.77  Aligned_cols=65  Identities=12%  Similarity=0.032  Sum_probs=55.6

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP  189 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P  189 (310)
                      .++..+|.++.-++-++.+++.|++|+++--+.      -..+..+|..+..+.++++|+-...+|.++-.
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~  193 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN  193 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence            566678999999999999999999999986543      34577899999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
2kck_A	112	Nmr Solution Structure Of The Northeast Structural		9e-05
1xnf_A	275	Crystal Structure Of E.Coli Tpr-Protein Nlpi Length		6e-04

>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural Genomics Consortium (Nesg) Target Mrr121a Length = 112

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G+L +  G+   S+  F+KAI+LDP +  Y   +G +LY L+R+EE  + +   +    
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 190 NDTEESIWCFLCEAQLY 206
           ++  + +W    +A  Y
Sbjct: 72  DEYNKDVWAAKADALRY 88

>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi Length = 275

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
           G+ L + G+   +   FD  +ELDP        RG++LYY  R +   +        +PN
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143
Query: 191 DTEESIWCFLCEAQL 205
           D   S+W +L E +L
Sbjct: 144 DPFRSLWLYLAEQKL 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-04

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 9/153 (5%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
            G+ L + G+   +   FD  +ELDP    A+L  RG++LYY  R +   +        +
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL-NRGIALYYGGRDKLAQDDLLAFYQDD 141

Query: 189 PNDTEESIWCFLCEAQL--YGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAF 246
           PND   S+W +L E +L      E   +  E     +              +   +    
Sbjct: 142 PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 247 SSGREN-----EYFYASLYAGLFYESQKKADAA 274
           +   +N          + Y G +Y S    D+A
Sbjct: 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
           RG+L    G    +  +F +A+ + P   + +    G+ L     F+   E F   +  +
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFN-YLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 189 PNDTE 193
           P    
Sbjct: 108 PTYNY 112

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 12/78 (15%), Positives = 24/78 (30%)

Query: 134 LFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193
           +  Q  +    A+      L        +  G     L   +     F++ VA N ++  
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 194 ESIWCFLCEAQLYGVDEA 211
           E  +  L  + L    + 
Sbjct: 251 EHRYALLELSLLGQDQDD 268

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 1/101 (0%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
              +A +   R     ++G+   ++++   A +L        ++     Y L   E    
Sbjct: 173 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

Query: 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR 220
           + R  +  + +           +     ++ A    +  GR
Sbjct: 233 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESA-EELIRDGR 272

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177
           +          R      +    V ++    + ++++P     L  R  +    + ++E 
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348

Query: 178 AEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR---NRFLEVGRDPR 223
            + +      N ND +  I   L +AQ       +    + L V R+ +
Sbjct: 349 IQDYETAQEHNENDQQ--IREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 1/89 (1%)

Query: 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR 164
           PS +   +A       S E      + +  F  GD   ++A  DK +E+          R
Sbjct: 125 PSENEEKEAQ-SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183

Query: 165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193
                      +     +       ++TE
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTE 212

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 9/129 (6%)

Query: 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186
            +  G  L   G +  ++++F  A++ DP      ++R      + + +         + 
Sbjct: 29  HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88

Query: 187 QNPNDTEESIWCFLCEAQLYG----VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKL 242
              + T       L    L      +DEA + F +V +   P   E           +++
Sbjct: 89  LKMDFTA----ARLQRGHLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEM 143

Query: 243 VAAFSSGRE 251
               S    
Sbjct: 144 QRLRSQALN 152

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 17/66 (25%), Positives = 26/66 (39%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
            RG + F   +   +  +FDKA ELDP       Q     Y  ++F++    F     + 
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368

Query: 189 PNDTEE 194
           P   E 
Sbjct: 369 PEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
             + A+     G+  F + D +G+  +  KAIEL PR  +Y++   L +   +   E   
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY-MALIMADRNDSTEYYN 291

Query: 180 QFRIDVAQNPNDTE 193
            F   +  + N++ 
Sbjct: 292 YFDKALKLDSNNSS 305

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 9/74 (12%), Positives = 21/74 (28%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
           +       I+   L +R+         F +A    P            L   + F++  +
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393

Query: 180 QFRIDVAQNPNDTE 193
           Q+ + +        
Sbjct: 394 QYDLAIELENKLDG 407

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           I   +++  + D       FDKA++LD    +  + RG   + L  +++  + F      
Sbjct: 274 IYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333

Query: 188 NPNDTE 193
           +P +  
Sbjct: 334 DPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 13/174 (7%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
                   GD+   V    KA+EL P   K  L +R  +   L +F +      + ++ N
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLL-RRASANEGLGKFADAMFDLSV-LSLN 102

Query: 189 PNDTEESIWCF----LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVA 244
            +  + SI       L +  +  + E           P  +  +     K   +      
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE------ 156

Query: 245 AFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALA 298
              S      F+      L + +  +++ A   ++    + Y +  + Y  A  
Sbjct: 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           +G   FR      ++  ++ A+EL      Y          +   ++  E     +   P
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 190 NDTE 193
           + ++
Sbjct: 71  DYSK 74

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 11/70 (15%), Positives = 20/70 (28%)

Query: 137 QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI 196
             + + +    +KA +LDPR +             +  +E    F           E+  
Sbjct: 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487

Query: 197 WCFLCEAQLY 206
                EA   
Sbjct: 488 AITFAEAAKV 497

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 8/64 (12%), Positives = 22/64 (34%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           R     ++G+   ++++   A +L        ++     Y L   E    + R  +  + 
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 190 NDTE 193
           +   
Sbjct: 220 DHKR 223

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 15/64 (23%), Positives = 26/64 (40%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           R  +    G    ++ +  K I L     A   QRG  L    + +E  + F+  +  NP
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 190 NDTE 193
           ++ E
Sbjct: 103 SEQE 106

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           +  G  L   G +  ++++F  A++ DP      ++R      + + +         +A 
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 188 NPNDTE 193
             + T 
Sbjct: 67  KMDFTA 72

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR 164
           PS     +A       + E      + +  F   D   ++   DK +E+          R
Sbjct: 102 PSEQEEKEAE-SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160

Query: 165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193
                      +     +       ++TE
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTE 189

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177
           +          R      +    V ++    + ++++P     L  R  +    + ++E 
Sbjct: 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325

Query: 178 AEQFRIDVAQNPNDTEESIWCFLCEAQL 205
            + +      N ND +  I   L +AQ 
Sbjct: 326 IQDYEAAQEHNENDQQ--IREGLEKAQR 351

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 16/100 (16%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP------------RQKAYLWQRG 165
            +++ EA    +   L ++ GD   S++E  + ++LD             ++   L +  
Sbjct: 184 KSDNTEAFY--KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241

Query: 166 LSLYYLDRFEEGAEQFRIDVAQNPNDTEESI--WCFLCEA 203
             L    R+ +   ++   +   P+  E ++     +C  
Sbjct: 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDP---------------RQKAYLWQRGLSLYYLD 172
           ++RG LL +QG +  +  +F K ++ +P                +   L  + L  +   
Sbjct: 75  LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134

Query: 173 RFEEGAEQFRIDVAQNPNDTE 193
            +          +     D E
Sbjct: 135 DYTAAITFLDKILEVCVWDAE 155

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 16/123 (13%), Positives = 27/123 (21%), Gaps = 9/123 (7%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P Q   +         L+  +             P
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171

Query: 190 NDTEESIWCFLCEAQLYGVDEARNRFLEV-GRDPRPVMREAYNMFKGG-----GDPEKLV 243
                       +  L  V        +  G  P+ V   A     GG        ++L+
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV--VAIAS-NGGGKQALETVQRLL 228

Query: 244 AAF 246
              
Sbjct: 229 PVL 231

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 11/69 (15%), Positives = 20/69 (28%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P+Q   +   G     L+       +    +A   
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

Query: 190 NDTEESIWC 198
           ND   ++ C
Sbjct: 478 NDHLVALAC 486

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 8/64 (12%), Positives = 13/64 (20%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G        V   +    +A  L P Q   +         L+  +             P
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443

Query: 190 NDTE 193
               
Sbjct: 444 QQVV 447

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 18/152 (11%), Positives = 32/152 (21%), Gaps = 9/152 (5%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P+Q   +         L+  +             P
Sbjct: 78  HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137

Query: 190 NDTEESIWCFLCEAQLYGVDEARNRFLE-VGRDPRPVMREAYNMFKGG----GDPEKLVA 244
                       +  L  V        +  G  P  V   A     GG       ++L+ 
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQV--VAIASNGGGKQALETVQRLLP 195

Query: 245 AFSSGRENEYFYASLYA--GLFYESQKKADAA 274
                           A  G   ++ +     
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQALETVQRL 227

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 8/64 (12%), Positives = 13/64 (20%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P Q   +   G     L+  +             P
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 190 NDTE 193
               
Sbjct: 410 EQVV 413

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P+Q   +   G     L+  +             P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 190 NDTE 193
               
Sbjct: 342 QQVV 345

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 9/74 (12%), Positives = 17/74 (22%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
             ++ V     G        V   +    +A  L P+Q   +         L+  +    
Sbjct: 238 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297

Query: 180 QFRIDVAQNPNDTE 193
                    P    
Sbjct: 298 VLCQAHGLTPQQVV 311

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 10/74 (13%), Positives = 18/74 (24%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
             ++ V     G        V   +    +A  L P+Q   +   G     L+  +    
Sbjct: 204 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 263

Query: 180 QFRIDVAQNPNDTE 193
                    P    
Sbjct: 264 VLCQAHGLTPQQVV 277

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 9/64 (14%), Positives = 15/64 (23%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G        V   +    +A  L P+Q   +   G     L+  +             P
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 190 NDTE 193
               
Sbjct: 240 QQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G        V   +    +A  L P+Q   +         L+  +             P
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

Query: 190 NDTE 193
               
Sbjct: 376 EQVV 379

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                 R G+    + +  K IE   +      +    L  L   E+  ++   +   NP
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAYVNP 136

Query: 190 NDTEE 194
              EE
Sbjct: 137 EKAEE 141

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G   ++      ++  ++KA EL          R  + Y    +E         V Q  
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 190 NDTE 193
               
Sbjct: 70  EMRA 73

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 7/65 (10%), Positives = 19/65 (29%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           R    + +G+   +++  + A+E     +A       S   +          +  +    
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 190 NDTEE 194
               E
Sbjct: 104 KSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
           R   L +      ++A+ +KAIE DP   +AY+  +  +   +  +    E       ++
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR-KATAQIAVKEYASALETLDAARTKD 237

Query: 189 PNDTE 193
                
Sbjct: 238 AEVNN 242

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 26/74 (35%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
           N  +A  A   G   F + D   +V  + + I+  P        R  +L  L  F E   
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194

Query: 180 QFRIDVAQNPNDTE 193
                + ++PN   
Sbjct: 195 DCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 6/65 (9%), Positives = 21/65 (32%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
           R   +L +  +    + + +    ++P +       G   +    +    + +   + + 
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

Query: 189 PNDTE 193
           P D  
Sbjct: 170 PEDAR 174

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 7/48 (14%), Positives = 13/48 (27%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE 175
           IR+        +   ++   D A   D         R +   Y    +
Sbjct: 211 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
               A+     G+  F + +++ +     ++I L P   +Y++   L+L   +  +E  +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF-LALTLADKENSQEFFK 297

Query: 180 QFRIDVAQNPNDTE 193
            F+  V  NP    
Sbjct: 298 FFQKAVDLNPEYPP 311

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 17/65 (26%), Positives = 23/65 (35%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
            RG + F   D   +  +F KA  L+P       Q    LY   +F E    F     + 
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374

Query: 189 PNDTE 193
           P   E
Sbjct: 375 PTLPE 379

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 14/76 (18%), Positives = 26/76 (34%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177
           +     AV    RG   F   +   ++  +  AIELDP +  +              E+ 
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKV 78

Query: 178 AEQFRIDVAQNPNDTE 193
            E     +   P+ ++
Sbjct: 79  IEFTTKALEIKPDHSK 94

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 22/66 (33%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           I+   LL++QG    S A F++     P            L     F+   +Q+ I    
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407

Query: 188 NPNDTE 193
                +
Sbjct: 408 EEVQEK 413

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           I   + L  + +       F KA++L+P      + RG   + L  ++   E F+   + 
Sbjct: 280 IFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339

Query: 188 NPNDTE 193
           NP +  
Sbjct: 340 NPENVY 345

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 17/47 (36%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE 176
                   GD+   +    KA+E+ P     L +R  +   L  F +
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 11/75 (14%), Positives = 21/75 (28%)

Query: 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178
             +        +      +     ++    KA ELDPR +            +++ +E  
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

Query: 179 EQFRIDVAQNPNDTE 193
           E F           E
Sbjct: 483 ELFEDSAILARTMDE 497

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ-RGLSLYYLDRFEE 176
            N  R+       G+   ++GD+  +V  F+ A++ DP +    WQ  G +    ++   
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116

Query: 177 GAEQFRIDVAQNPNDTE 193
                R  +   P++  
Sbjct: 117 AISALRRCLELKPDNQT 133

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 9/64 (14%), Positives = 19/64 (29%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G         + +++   + +EL P  +  L    +S        +  E  R  +   P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 190 NDTE 193
               
Sbjct: 164 AYAH 167

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR-GLSLYYLDRFEEGA 178
            S +  V    G+L    G+   +V  F  A+ + P     LW + G +L   ++ EE  
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAV 271

Query: 179 EQFRIDVAQNPNDTE 193
             +R  +   P    
Sbjct: 272 AAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           + G  L        +VA + +A+EL P   ++     G+S   L    E  E F   +  
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRY-NLGISCINLGAHREAVEHFLEALNM 314

Query: 188 NPNDTE 193
                 
Sbjct: 315 QRKSRG 320

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 17/81 (20%), Positives = 30/81 (37%)

Query: 113 ALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD 172
           A+  G      A   +  G      G+   + A     ++  P  +A      + LY L 
Sbjct: 16  AIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG 75

Query: 173 RFEEGAEQFRIDVAQNPNDTE 193
           R+E+G E     +A+  +D  
Sbjct: 76  RYEQGVELLLKIIAETSDDET 96

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ-RGLSLYYLDRFEE 176
            N  ++   A   G+   ++GD+  ++   + AI  DP   A  WQ  G++    +  + 
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQA 117

Query: 177 GAEQFRIDVAQNPNDTE 193
                +  +   PN+ +
Sbjct: 118 AIVALQRCLELQPNNLK 134

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 22/65 (33%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
           R G  L        +V  + +A+E+ P      +  G+S   L  + E    F   ++  
Sbjct: 252 RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311

Query: 189 PNDTE 193
                
Sbjct: 312 RKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR-GLSLYYLDRFEE 176
           N +  +  +    G+L    G+   ++  F+ A+ + P +   LW R G +L   DR EE
Sbjct: 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEE 265

Query: 177 GAEQFRIDVAQNPNDTE 193
             E +   +   P    
Sbjct: 266 AVEAYTRALEIQPGFIR 282

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
              + F+   +  S      AI+ +P         G       + +E  E +R  +   P
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 190 NDTE 193
           +  +
Sbjct: 99  DFID 102

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 9/64 (14%), Positives = 21/64 (32%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G +   +G +  ++  +  A+ L P           +L      E   + +   +  NP
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 190 NDTE 193
           +   
Sbjct: 133 DLYC 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G +L        +VA + +A+ L P             Y     +   + +R  +   P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 190 NDTE 193
           +  +
Sbjct: 269 HFPD 272

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 11/64 (17%), Positives = 18/64 (28%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
               L  +G V  +   ++ A+ L P     L             EE    +R  +   P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 190 NDTE 193
               
Sbjct: 337 EFAA 340

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 11/64 (17%), Positives = 25/64 (39%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
              +   QG++  +V  + KA+E+ P   A        L    + +E    ++  +  +P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 190 NDTE 193
              +
Sbjct: 371 TFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 15/64 (23%), Positives = 20/64 (31%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G LL   G +  + A + KAIE  P         G               F   V  +P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 190 NDTE 193
           N  +
Sbjct: 201 NFLD 204

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 23/64 (35%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
               L   GD+ G+V  +  A++ +P         G  L  L R EE    +   +   P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 190 NDTE 193
           N   
Sbjct: 167 NFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 10/66 (15%), Positives = 20/66 (30%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           +      ++ GD   +     +    +P     L       +   R +  A    + + Q
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 188 NPNDTE 193
           NP   E
Sbjct: 63  NPLLAE 68

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G +   QG++  ++  F+KA+ LDP         G  L     F+     +   ++ +P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 190 NDTE 193
           N   
Sbjct: 235 NHAV 238

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 2/76 (2%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G   ++ G    +   F     LD     Y    G     L  +E+  + +      + 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 190 NDTEESIWCFLCEAQL 205
           N+          E  L
Sbjct: 84  NEPR--FPFHAAECHL 97

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/95 (11%), Positives = 24/95 (25%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
           +  +A   +  G      G    ++  +     +D  +  + +        L   +    
Sbjct: 48  DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107

Query: 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 214
            F    A                A L  V   ++R
Sbjct: 108 GFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEE 176
            G +     ++  +   F ++I  D     AY  QRG+  Y  ++++ 
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF-QRGMLYYQTEKYDL 89

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 10/64 (15%), Positives = 22/64 (34%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G   + +G+   ++   +K I          ++ G + YY   + +    F   +   P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173

Query: 190 NDTE 193
           N   
Sbjct: 174 NIYI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE---GAEQFRIDV 185
           R    LF+  +   ++  F+K             +R +  Y L +++      E +   V
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67

Query: 186 AQNPNDTE 193
                 + 
Sbjct: 68  NATKAKSA 75

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 10/64 (15%), Positives = 23/64 (35%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G +L ++G    ++ ++  A++ D  +     Q G   Y    F    +     +    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 190 NDTE 193
            D +
Sbjct: 140 TDPK 143

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEE 176
            G   +   + V + + F K +EL P     YLW R  +    D   +
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW-RARANAAQDPDTK 194

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
            G+L +  G+   S+  F+KAI+LDP   K +L  +G +LY L+R+EE  + +   +   
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWL-MKGKALYNLERYEEAVDCYNYVINVI 70

Query: 189 PNDTEESIW 197
            ++  + +W
Sbjct: 71  EDEYNKDVW 79

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDP-RQKAYLWQ-RGLSLYYLDRFEEGAEQFRIDVAQ 187
           +G  L+       +V  ++  I +        +W  +  +L Y++  E  AE        
Sbjct: 46  KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

Query: 188 NPND 191
             + 
Sbjct: 106 EHHH 109

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ-RGLSLYYLDRFEE 176
           NN        +  G+ + +  ++  +   F+   +  P ++   W+  GL+    ++   
Sbjct: 15  NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGL 73

Query: 177 GAEQFRIDVAQNPNDTE 193
                      +P D  
Sbjct: 74  AIIALNHARMLDPKDIA 90

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 8/66 (12%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           + G  L        ++  +++A++++P   +       +S   + +++  A+Q    +  
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMY-NMAVSYSNMSQYDLAAKQLVRAIYM 269

Query: 188 NPNDTE 193
               T 
Sbjct: 270 QVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 9/64 (14%), Positives = 17/64 (26%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G+          ++   + A  LDP+  A      +S              R  +   P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 190 NDTE 193
              +
Sbjct: 121 QYEQ 124

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW-QRGLSLYYLDRFEEGAEQFRIDVAQN 188
            G+L     +   + A   +A+EL P   A LW + G +L   +R +E  + +   +  N
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236

Query: 189 PNDTE 193
           P    
Sbjct: 237 PGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 116 GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRF 174
              +   + +             +          A+E++P   + +    G+     + +
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA-SLGVLYNLSNNY 188

Query: 175 EEGAEQFRIDVAQNPNDTE 193
           +  A   R  V   P+D +
Sbjct: 189 DSAAANLRRAVELRPDDAQ 207

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
              L    G +  ++A++ KA+E  P+      +   +L    + EE A    ++   + 
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

Query: 190 N 190
           +
Sbjct: 217 H 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           RG++    G+   + A   +A+ L+   +            + R +E   Q+   + Q P
Sbjct: 124 RGLVYALLGERDKAEASLKQALALEDTPEIRS-ALAELYLSMGRLDEALAQYAKALEQAP 182

Query: 190 NDTE 193
            D +
Sbjct: 183 KDLD 186

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           +R G+ L+  G    ++  F++A++ +P+    L+    +   L       E  +  VA+
Sbjct: 9   LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 188 NPNDTE 193
            P    
Sbjct: 69  TPRYLG 74

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 9/76 (11%), Positives = 25/76 (32%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177
           NN        +  G+ + +  ++  +   F+   + +P ++      GL+    ++    
Sbjct: 11  NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70

Query: 178 AEQFRIDVAQNPNDTE 193
                     +P D  
Sbjct: 71  IIALNHARMLDPKDIA 86

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 128 IRRGMLLFRQGD-VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186
           I  G   +   +     +    K +    + +   ++ GLS  +  R+E+     +  + 
Sbjct: 126 IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

Query: 187 QNPND 191
           + P+ 
Sbjct: 186 RFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 4/75 (5%), Positives = 22/75 (29%)

Query: 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178
           N+   + +A    +   +  +   +   + + ++  P     L           + ++  
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 179 EQFRIDVAQNPNDTE 193
             +   +    ++  
Sbjct: 109 RMYEKILQLEADNLA 123

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY-LDRFEEGAEQFRIDVAQN 188
              +   +G    ++  ++K ++L+    A     G   Y   ++ ++  E     ++  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 189 PNDTE 193
                
Sbjct: 154 TKMQY 158

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 20/174 (11%), Positives = 54/174 (31%), Gaps = 30/174 (17%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQ---------------RGLSLYYL 171
           +++       G    +V+ F + I L+  + + Y W                  L+    
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 172 DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR---NRFLEVGRDPRPVMRE 228
             +++    ++  + + PN+ +    C   +       +A     + L++  +   +   
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNL--A 123

Query: 229 AYN-----MFKGGGDPEKLVAAFSSGREN--EYFYASLYAGLFYESQKKADAAK 275
           A        +      +K +        +  +  YA    GL      + + A+
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKAR 177

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                + +G +  +   F      D     Y+          ++F++ A+ + +  A   
Sbjct: 42  YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101

Query: 190 NDTEESIWCFLCEAQL 205
           ND          + QL
Sbjct: 102 NDYT--PVFHTGQCQL 115

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G +L +      ++    +A+EL+       +Q G+ L      +E   QF     Q+P
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 190 NDTE 193
              +
Sbjct: 191 GHAD 194

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
            GM L  +G +  ++++F    E DP    A+    G++  Y +  E+  E     +   
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFY-NAGVTYAYKENREKALEMLDKAIDIQ 223

Query: 189 PNDTE 193
           P+   
Sbjct: 224 PDHML 228

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
              LL    ++  ++A +DKA+ELD     AY    G      + ++E  + F   +   
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYY-GAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 189 PNDTE 193
             + +
Sbjct: 122 MENGD 126

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 8/78 (10%), Positives = 26/78 (33%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           +G+   +QG    + A   +++   P+      +   +     +  +    F+   ++  
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 190 NDTEESIWCFLCEAQLYG 207
               + +      A+  G
Sbjct: 179 VLQADDLLLGWKIAKALG 196

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGA 178
            ++ + +  +  M   R  D   + A  + A++ DP+ + A+L  R     YL   ++  
Sbjct: 4   ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLV-RAEIYQYLKVNDKAQ 62

Query: 179 EQFRIDVAQNPNDTEESIWC----FLCEAQLYGVDEARNRFLEVGRDP-RPVMREAYN-- 231
           E FR  ++  P+  E  I      FLC  +L    E+   F +   DP  P    A    
Sbjct: 63  ESFRQALSIKPDSAE--INNNYGWFLCG-RLNRPAESMAYFDKALADPTYPTPYIANLNK 119

Query: 232 --MFKGGGDPEKLVAAF 246
                  G      A  
Sbjct: 120 GICSAKQGQFGLAEAYL 136

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 9/87 (10%), Positives = 22/87 (25%)

Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
                 ++ G    +   F     LD     +    G     + +++     +      +
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 189 PNDTEESIWCFLCEAQLYGVDEARNRF 215
             +         C  Q   + EA +  
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGL 112

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
           R     + G+  G+V + ++AI +DP   KAY  + GL+L  L++  E    ++  +  +
Sbjct: 52  RAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG-RMGLALSSLNKHVEAVAYYKKALELD 110

Query: 189 PNDTE 193
           P++  
Sbjct: 111 PDNET 115

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE 176
           +S EA      G    +  +   +V  + KAIEL+P    Y   R  +   L  +  
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G        V   +    +A  L P Q   +         L+  +             P
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 359

Query: 190 NDTE 193
           +   
Sbjct: 360 DQVV 363

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 8/64 (12%), Positives = 13/64 (20%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G        V   +    +A  L P Q   +   G     L+  +              
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596

Query: 190 NDTE 193
               
Sbjct: 597 VQVV 600

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P Q   +   G     L+  +             P
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325

Query: 190 NDTE 193
           +   
Sbjct: 326 DQVV 329

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 7/64 (10%), Positives = 12/64 (18%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P Q   +   G     L+  +              
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698

Query: 190 NDTE 193
               
Sbjct: 699 EQVV 702

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 7/64 (10%), Positives = 13/64 (20%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P Q   +         L+  +             P
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257

Query: 190 NDTE 193
           +   
Sbjct: 258 DQVV 261

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 6/64 (9%), Positives = 13/64 (20%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     +   +    +A  L P Q   +         L+  +             P
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291

Query: 190 NDTE 193
           +   
Sbjct: 292 DQVV 295

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
                     V   +    +A  L P Q   +   G     L+  +             P
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393

Query: 190 NDTE 193
           +   
Sbjct: 394 DQVV 397

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 7/64 (10%), Positives = 12/64 (18%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G        V   +    +A  L   Q   +         L+  +             P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

Query: 190 NDTE 193
               
Sbjct: 631 AQVV 634

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW-QRGLSLYYLDRFEEGAEQFRIDVA 186
           ++    L  QGD+  ++   ++ ++ +P  K   +   G +   L  +++    ++  + 
Sbjct: 4   LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63

Query: 187 QNPNDTE 193
            NP+   
Sbjct: 64  LNPDSPA 70

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR--IDVAQ 187
            G           ++     A++ DP         G +L          + +   +  AQ
Sbjct: 25  LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84

Query: 188 NPNDTE 193
           +  D +
Sbjct: 85  SRGDQQ 90

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G +  +      ++    +A+ L P+  +     G     +  FE   + F   +    
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 190 NDTEESIWCFLCEA--QLYGVDEA 211
           +DT       L        G  EA
Sbjct: 302 DDTF--SVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 22/170 (12%)

Query: 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185
           V +      +   D           +E DP   + L     +L  L++  E        V
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

Query: 186 AQNPNDTEESIWC-----FLCEAQLYGVDEAR---NRFLEVGRDPRPVMREAY----NMF 233
              P++     W      +L        + AR   ++   +  +       A+    + F
Sbjct: 84  DLYPSNPV--SWFAVGCYYLMVGHKN--EHARRYLSKATTL--EKTYG--PAWIAYGHSF 135

Query: 234 KGGGDPEKLVAAFSSGREN--EYFYASLYAGLFYESQKKADAAKLHILAA 281
               + ++ +AA+ +  +         LY GL Y     +  A+     A
Sbjct: 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 2/84 (2%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
             ++ V  +         GD         + + L P     + + G   +   R  E A 
Sbjct: 19  RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78

Query: 180 QFRIDVAQNPNDTEESIWCFLCEA 203
             +      P      I  +L  A
Sbjct: 79  LLQQASDAAPEHPG--IALWLGHA 100

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
           G+   ++G+   +     KA+E+DP    A+     +        +   E++R  +A + 
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA-LAVVFQTEMEPKLADEEYRKALASDS 102

Query: 190 NDTEESIWC----FLCEAQLYGVDEARNRF---LEVGRDPRPVMREAYN----MFKGGGD 238
            +    +      FL E + Y  +EA  R     +    P       +     +      
Sbjct: 103 RNAR--VLNNYGGFLYEQKRY--EEAYQRLLEASQDTLYPERS--RVFENLGLVSLQMKK 156

Query: 239 PEKLVAAF 246
           P +    F
Sbjct: 157 PAQAKEYF 164

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 7/63 (11%), Positives = 22/63 (34%)

Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
           G++  +      +   F+K++ L+  Q +   +    LY    +    + + +       
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 191 DTE 193
           +  
Sbjct: 208 NAR 210

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 23/70 (32%)

Query: 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183
           A      G  L    DV G++  + +AI+++P                    E    +R 
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

Query: 184 DVAQNPNDTE 193
            +   P+  +
Sbjct: 137 ALKLKPDFPD 146

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 10/64 (15%), Positives = 25/64 (39%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
              +L +QG +  ++  + +AI + P         G +L  +   +   + +   +  NP
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 190 NDTE 193
              +
Sbjct: 109 AFAD 112

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
              +   QG++  +V  + KA+E+ P   A        L    + +E    ++  +  +P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 190 NDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYN----MFKGGGDPEKLVAA 245
              +          ++  V  A   +    +   P   +A++    + K  G+  + +A+
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIHKDSGNIPEAIAS 133

Query: 246 FSSGRENEYFYASLYAGLFY 265
           + +  + +  +   Y  L +
Sbjct: 134 YRTALKLKPDFPDAYCNLAH 153

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 6/64 (9%), Positives = 16/64 (25%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
            G    +      ++   ++ + L            L   +              +A +P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 190 NDTE 193
           N+  
Sbjct: 582 NEIM 585

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177
           N   + + + + +   LF +   +  +A   K +E+DP           SL+      + 
Sbjct: 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358

Query: 178 AEQFRIDVAQNPNDTEESIWC 198
                  V ++P       W 
Sbjct: 359 YLISNDLVDRHPEKAV--TWL 377

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE 176
           GN++ R+     + G+   + G    +V   ++  + D          G++       + 
Sbjct: 2   GNDDIRQVYYRDK-GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 177 GAEQFRIDVAQNPNDTE 193
           G E     +A  P++ +
Sbjct: 61  GTELLERSLADAPDNVK 77

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
            G+ L   G    ++  F  A+ L P + K +      S   + R EE    F+     +
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVH-RAIAFSYEQMGRHEEALPHFKKANELD 174

Query: 189 PNDTE 193
              + 
Sbjct: 175 EGASV 179

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 4/97 (4%)

Query: 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182
            +++   + +    +G    S    +  I+L+     Y+   G          E A+ + 
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL-LGKVYEMKGMNREAADAYL 334

Query: 183 IDVAQNPNDTEESIWC--FLCEAQLYGVDEARNRFLE 217
                 P       W    + +  +  V    ++FL 
Sbjct: 335 TAFNLRPGA-NTLYWIENGIFQTSVPYVVPYLDKFLA 370

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 8/65 (12%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
           R     +  +   ++ + ++ I+L+P   K Y   +  +L  +  + +  + ++  +  +
Sbjct: 56  RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR-KAAALEAMKDYTKAMDVYQKALDLD 114

Query: 189 PNDTE 193
            +  E
Sbjct: 115 SSCKE 119

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFR--IDVAQ 187
                +  +   ++A F++ +E DP     Y    G     LDR ++  + +   I+VA+
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYH-LGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 188 NPNDTE 193
                +
Sbjct: 73  EEGTQK 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.84
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.81
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.78
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.77
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.75
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.75
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.72
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.72
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.72
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.71
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.71
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.69
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.69
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.68
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.68
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.68
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.66
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.66
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.66
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.66
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.65
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.63
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.62
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.59
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.56
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.53
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.52
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.52
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.49
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.49
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.48
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.48
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.46
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.46
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.46
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.45
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.43
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.4
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.39
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.38
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.38
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.37
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.37
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.37
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.36
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.36
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.36
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.36
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.34
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.34
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.33
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.33
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.32
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.32
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.32
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.3
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.29
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.27
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.24
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.23
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.23
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.22
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.21
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.2
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.19
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.19
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.17
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.17
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.15
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.13
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.13
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.12
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.11
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.1
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.09
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.04
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.03
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.03
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.0
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.0
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.97
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.95
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.93
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.93
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.92
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.87
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.83
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.81
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.78
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.69
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.51
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.5
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.42
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.41
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.33
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.26
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.01
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.92
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.87
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.84
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.76
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.67
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.66
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.66
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.65
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.54
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.35
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.72
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.2
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.86
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.6
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.53
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.27
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.28
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.83
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.8
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.72
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.56
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.21
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.79
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	87.43
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	85.9
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	85.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	84.96
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	83.18
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.78
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	82.72
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	81.53

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.84  E-value=1e-21  Score=172.27  Aligned_cols=185  Identities=16%  Similarity=0.104  Sum_probs=114.0

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      |+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++...+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            55566666666666666666666666666666666666666666666666666666666666666666666553333333


Q ss_pred             hhhhh-----------cChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhh
Q 021611          201 CEAQL-----------YGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLF  264 (310)
Q Consensus       201 ~~a~l-----------~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~  264 (310)
                      +....           |++++|+..+.++   .|+....+......+...|++++|+..+...  .+ +...+++.+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            33355           6666666655542   2332222222223344456666665555421  12 445667789999


Q ss_pred             hhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          265 YESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       265 ~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +..+|++++|+..|++++++.  +.+.+.+.+++.++...|++.
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~  202 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAE  202 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-----
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHH
Confidence            999999999999999999844  346688889999999998874

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.81  E-value=4e-21  Score=168.47  Aligned_cols=181  Identities=11%  Similarity=0.016  Sum_probs=136.8

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh---------
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL---------  171 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l---------  171 (310)
                      .+...+|...+.+++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+         
T Consensus        18 ~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~   95 (217)
T 2pl2_A           18 LGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER   95 (217)
T ss_dssp             TTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence            3456789999999998  99999999999999999999999999999999999999999999999999999         


Q ss_pred             --hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC--CChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611          172 --DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR--DPRPVMREAYNMFKGGGDPEKLVAAFS  247 (310)
Q Consensus       172 --g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~--d~~~~~~~a~~l~~~~~~~e~al~~~~  247 (310)
                        |++++|+..|+++++++|+++.++...+.+...+|++++|+..+.++..  +....+......+...|++++++..+.
T Consensus        96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  175 (217)
T 2pl2_A           96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYA  175 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence              9999999999999999999987554444445588999999998876321  333333333344555788999888876


Q ss_pred             C--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          248 S--GRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       248 ~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      .  ...|+...+++.+|.++..+|++++|+.+|+++-.
T Consensus       176 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          176 KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            3  23566677888999999999999999999998753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=3.7e-20  Score=177.93  Aligned_cols=199  Identities=12%  Similarity=-0.028  Sum_probs=155.7

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc-cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~-~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      +...+|...+++++.  ++|+++.+|++||.++..+|+ +++|+++|+++|+++|++..+|+++|.++..+|++++|+.+
T Consensus       111 g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~  188 (382)
T 2h6f_A          111 ERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF  188 (382)
T ss_dssp             CCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             CChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            357788999999998  999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHH-HHHHhhcCCCChHHH-----HHHhcC--C
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMR-EAYNMFKGGGDPEKL-----VAAFSS--G  249 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~-~a~~l~~~~~~~e~a-----l~~~~~--~  249 (310)
                      |+++++++|++..++..++.+...+|++++|+..+.++   .++....+. .+..+....+..+++     +..+..  .
T Consensus       189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~  268 (382)
T 2h6f_A          189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK  268 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            99999999999876554555555889999999988763   444333333 333333324553444     244432  2


Q ss_pred             CCcchhHhhhhhhhhhhhcc--chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          250 RENEYFYASLYAGLFYESQK--KADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~G--~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      .+|+...+++++|.++..+|  ++++|+..+.++ +.  ...+...+..|+.++..+|
T Consensus       269 l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~  323 (382)
T 2h6f_A          269 LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDML  323 (382)
T ss_dssp             HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHh
Confidence            35666778889999998888  699999999887 53  3456677778888888764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.78  E-value=3.7e-19  Score=166.33  Aligned_cols=200  Identities=14%  Similarity=0.061  Sum_probs=145.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...|.+++.  ++|+++.+|..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|++.|+
T Consensus       184 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  261 (388)
T 1w3b_A          184 EIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45567777777777  7888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYA  257 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a  257 (310)
                      ++++++|+++..+...+.+..+.|++++|+..+.++   .++....+......+...|++++|+..+..  ...|+...+
T Consensus       262 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  341 (388)
T 1w3b_A          262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            888888877664333333334678888888877653   333333333334455567788888777752  334556667


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      ++.+|.++..+|++++|+.+|++++++.  +...+.+.++|.++..+|+
T Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          342 HSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHhHHHHHHHccC
Confidence            7788888888888888888888888854  3456788888888777663

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.78  E-value=1.2e-19  Score=152.51  Aligned_cols=164  Identities=15%  Similarity=0.151  Sum_probs=134.7

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC  201 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~  201 (310)
                      +++.+|+++|.++..+|++++|++.|+++++++|+++.+++.+|.++..+|++++|++.+++++..+|+++......+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999987754444444


Q ss_pred             hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          202 EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                      ....+++++|...+.++   .++....+......+...|++++|+..+..  ..+|+...+++.+|.++..+|++++|+.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence            44778899998887663   344333333333445557899999888763  2356667788899999999999999999


Q ss_pred             HHHHhhcCC
Q 021611          277 HILAACESP  285 (310)
Q Consensus       277 ~~~kAl~~~  285 (310)
                      +|++|+++.
T Consensus       163 ~~~~al~~~  171 (184)
T 3vtx_A          163 YFKKALEKE  171 (184)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhCC
Confidence            999999954

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=8.7e-20  Score=168.96  Aligned_cols=205  Identities=13%  Similarity=0.058  Sum_probs=164.3

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+...+|...|.+++.  .+|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|++
T Consensus        77 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  154 (365)
T 4eqf_A           77 KEGDLPVTILFMEAAIL--QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE  154 (365)
T ss_dssp             HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH
Confidence            34467789999999998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCccceee----------eehhhhhcChHHHHHhHHHh---cCC--ChhhHHHHHHhhcCCCChHHHHH
Q 021611          180 QFRIDVAQNPNDTEESIWC----------FLCEAQLYGVDEARNRFLEV---GRD--PRPVMREAYNMFKGGGDPEKLVA  244 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~----------~l~~a~l~~~~eA~~~l~~~---~~d--~~~~~~~a~~l~~~~~~~e~al~  244 (310)
                      .|+++++++|++.......          +.+....|++++|+..+.++   .++  ....+......+...|++++|+.
T Consensus       155 ~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~  234 (365)
T 4eqf_A          155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID  234 (365)
T ss_dssp             HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999876543222          22334678899999988764   333  22223333334555788999888


Q ss_pred             HhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          245 AFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       245 ~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      .+...  ..|+...++..+|.++..+|++++|+.+|++++++.  +.+...+.++|.++..+|+|.
T Consensus       235 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHH
Confidence            77532  245556678889999999999999999999999954  345788899999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.77  E-value=2.8e-19  Score=167.14  Aligned_cols=201  Identities=15%  Similarity=0.032  Sum_probs=104.0

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...|.+++.  ++|+++.++..+|.++..+|++++|++.|+++++++|++..++.++|.++...|++++|++.|+
T Consensus       116 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  193 (388)
T 1w3b_A          116 DMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE  193 (388)
T ss_dssp             CSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33444445555554  5555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYA  257 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a  257 (310)
                      ++++++|+++.++...+.+....|++++|+..+.++   .|+....+......+...|++++++..+..  ...|+...+
T Consensus       194 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  273 (388)
T 1w3b_A          194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA  273 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence            555555555443222222222445555555554432   222222222222233345566666555542  123334445


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      +..+|.++..+|++++|+..|+++++..  +.+.+.+.+++.++...|+|
T Consensus       274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          274 YCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCH
Confidence            5566666666777777777777776632  23446666667777666665

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=3e-19  Score=171.59  Aligned_cols=188  Identities=9%  Similarity=-0.072  Sum_probs=154.5

Q ss_pred             hcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh-hhhhhhhhhhhhccCCCCC
Q 021611          114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR-FEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       114 ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~-~~eA~~~f~~Al~l~P~d~  192 (310)
                      +|.  ++|+++.+|..+|.++...|++++|++.|+++|+++|++..+|+++|.++..+|+ +++|+++|+++++++|+++
T Consensus        89 ai~--~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~  166 (382)
T 2h6f_A           89 QII--YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY  166 (382)
T ss_dssp             EEC--CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhh--CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence            355  9999999999999999999999999999999999999999999999999999997 9999999999999999998


Q ss_pred             ccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhh
Q 021611          193 EESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYES  267 (310)
Q Consensus       193 ~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~  267 (310)
                      .++..++.+...+|++++|+..+.++   .++....+......+...|++++++..+..  ..+|+...+++++|.++..
T Consensus       167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            86555555555889999999988774   344333333333344446778888877763  3456678889999999999


Q ss_pred             -ccchhhH-----HHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          268 -QKKADAA-----KLHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       268 -~G~~d~A-----~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                       .|..++|     +.+|++|+++.  +.+...+.+++.++...|
T Consensus       247 l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          247 TTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccC
Confidence             6666888     59999999955  346688899999988876

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.75  E-value=4.1e-19  Score=183.76  Aligned_cols=166  Identities=11%  Similarity=0.039  Sum_probs=138.1

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      ..|+++++|+++|.++..+|++++|++.|++||+++|++..+++++|.++..+|++++|++.|+++++++|++++++...
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998865544


Q ss_pred             eehhhhhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhh
Q 021611          199 FLCEAQLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADA  273 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~  273 (310)
                      +.+...+|++++|++.+.+   +.++....+......+...|++++|++.++.  ..+|+...++..+|.++..+|++++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            4455588999999998876   3444444444444456667888888887763  2356677788889999999999999


Q ss_pred             HHHHHHHhhcC
Q 021611          274 AKLHILAACES  284 (310)
Q Consensus       274 A~~~~~kAl~~  284 (310)
                      |.+.|++++++
T Consensus       164 A~~~~~kal~l  174 (723)
T 4gyw_A          164 YDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988873

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.75  E-value=6.1e-19  Score=158.86  Aligned_cols=111  Identities=11%  Similarity=-0.018  Sum_probs=53.6

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheecc-ccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      .++...+.+++.  .+|+++.+|+.+|.++...| ++++|+..|+++++++|++..++..+|.++...|++++|++.|++
T Consensus        73 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  150 (330)
T 3hym_B           73 NELFYLSHKLVD--LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT  150 (330)
T ss_dssp             HHHHHHHHHHHH--HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            344444444444  45555555555555555555 455555555555555555555555555555555555555555555


Q ss_pred             hhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      +++++|++.....+.+.+....|++++|...+.+
T Consensus       151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  184 (330)
T 3hym_B          151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ  184 (330)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            5555554443322222222244445555544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.74  E-value=2.2e-18  Score=158.55  Aligned_cols=204  Identities=13%  Similarity=0.039  Sum_probs=165.6

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+...+|...+.+++.  .+|+++.+|+.+|.++...|++++|++.|+++++++|+++.+++.+|.++...|++++|++.
T Consensus        77 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  154 (368)
T 1fch_A           77 EGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI  154 (368)
T ss_dssp             TTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3467789999999998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceee--------------eehhh-hhcChHHHHHhHHHh---cCC--ChhhHHHHHHhhcCCCChH
Q 021611          181 FRIDVAQNPNDTEESIWC--------------FLCEA-QLYGVDEARNRFLEV---GRD--PRPVMREAYNMFKGGGDPE  240 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~--------------~l~~a-~l~~~~eA~~~l~~~---~~d--~~~~~~~a~~l~~~~~~~e  240 (310)
                      |+++++++|++.......              .++.. ..|++++|+..+.++   .++  ....+......+...|+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~  234 (368)
T 1fch_A          155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD  234 (368)
T ss_dssp             HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence            999999999987643321              22222 678899999988763   333  2222323333455578899


Q ss_pred             HHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          241 KLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       241 ~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +|+..+...  ..|+...+++.+|.++..+|++++|+.+|++++++.  +.....+.++|.++..+|+|.
T Consensus       235 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~  302 (368)
T 1fch_A          235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHR  302 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHH
Confidence            988877532  244556678889999999999999999999999954  345688899999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.72  E-value=2.7e-18  Score=138.80  Aligned_cols=117  Identities=13%  Similarity=0.161  Sum_probs=102.2

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      +||+.+++|.++|.+++.+|+|++|++.|++||+++|+++.+|+++|.++..+|++++|+++|+++++++|+++.     
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----   82 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK-----   82 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH-----
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997643     


Q ss_pred             eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611          199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI  278 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~  278 (310)
                                                                                +++.+|.++..+|++++|+.+|
T Consensus        83 ----------------------------------------------------------a~~~lg~~~~~~~~~~~A~~~~  104 (126)
T 4gco_A           83 ----------------------------------------------------------GYIRKAACLVAMREWSKAQRAY  104 (126)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHCCCHHHHHHHH
Confidence                                                                      2345777788888888888888


Q ss_pred             HHhhcCCCCCCChHHHHHHHHH
Q 021611          279 LAACESPYGQRSDDYMAALAKV  300 (310)
Q Consensus       279 ~kAl~~~~~~~s~~~~~~la~~  300 (310)
                      ++++++.  +.+.+...+|+.+
T Consensus       105 ~~al~l~--P~~~~a~~~l~~~  124 (126)
T 4gco_A          105 EDALQVD--PSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHC--cCCHHHHHHHHHh
Confidence            8888854  3455676677654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.72  E-value=6.3e-18  Score=147.06  Aligned_cols=180  Identities=12%  Similarity=0.109  Sum_probs=95.6

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCc-chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC  201 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~  201 (310)
                      ++.+++.+|.+++..|++++|++.|+++++++| .+..+++++|.++..+|++++|++.|+++++++|+++.++...+.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            345555555555555555555555555555555 4555555555555555555555555555555555544432222222


Q ss_pred             hhhhcChHHHHHhHHHh---cCCChhh-------HHHHHHhhcCCCChHHHHHHhc--CCCCcc--hhHhhhhhhhhhhh
Q 021611          202 EAQLYGVDEARNRFLEV---GRDPRPV-------MREAYNMFKGGGDPEKLVAAFS--SGRENE--YFYASLYAGLFYES  267 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~---~~d~~~~-------~~~a~~l~~~~~~~e~al~~~~--~~~~~d--~~~a~~~lG~~~~~  267 (310)
                      ...+|++++|+..+.++   .|+....       +......+...|++++|+..+.  ....|+  ...+++.+|.++..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            33455555555554442   2221100       1111112233455555555553  222344  34455555555555


Q ss_pred             ccch---------------------------hhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611          268 QKKA---------------------------DAAKLHILAACESPYGQRSDDYMAALAKVHSLC  304 (310)
Q Consensus       268 ~G~~---------------------------d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~  304 (310)
                      +|+.                           ++|+.+|++++++.  +.+.+....|+.+....
T Consensus       166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHhh
Confidence            5555                           99999999999954  34567777777776554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.72  E-value=2.5e-18  Score=148.78  Aligned_cols=203  Identities=13%  Similarity=0.057  Sum_probs=152.4

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      .+.+...+|...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+
T Consensus        34 ~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  111 (243)
T 2q7f_A           34 SEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK  111 (243)
T ss_dssp             --------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence            334467789999999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc
Q 021611          179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE  253 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d  253 (310)
                      +.|+++++++|+++..+...+.+....|++++|+..+.++   .++....+......+...|++++|+..+...  ..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999999999988764333333344789999999988764   3333333322333344467888887776522  2344


Q ss_pred             hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          254 YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      ....++.+|.++..+|++++|+.+|++++++.  +.+...+..++.+....|
T Consensus       192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHHTC------
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHHHHHHhhcc
Confidence            55677889999999999999999999999943  345677777776665544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.71  E-value=1.5e-18  Score=160.68  Aligned_cols=203  Identities=13%  Similarity=0.032  Sum_probs=156.3

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh----------ccchhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR----------GLSLYY  170 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~----------G~a~~~  170 (310)
                      .+...+|...+.+++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..+          |.++..
T Consensus       112 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~  189 (365)
T 4eqf_A          112 NENEQAAIVALQRCLE--LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD  189 (365)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred             CCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence            3456788999999998  9999999999999999999999999999999999999998888776          999999


Q ss_pred             hhhhhhhhhhhhhhhccCCC--CCccceeeeehh--hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHH
Q 021611          171 LDRFEEGAEQFRIDVAQNPN--DTEESIWCFLCE--AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLV  243 (310)
Q Consensus       171 lg~~~eA~~~f~~Al~l~P~--d~~~~~~~~l~~--a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al  243 (310)
                      .|++++|++.|+++++++|+  ++.  .+..++.  ...|++++|+..+.++   .++....+......+...|++++|+
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  267 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPD--LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV  267 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999  554  4444444  4789999999988773   3443333434444555688999988


Q ss_pred             HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC----------CChHHHHHHHHHhhcccCC
Q 021611          244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ----------RSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~----------~s~~~~~~la~~~~~~~~~  307 (310)
                      ..+...  ..|+...+++.+|.++..+|++++|+.+|++++++....          .+...+.+|+.++..+|.+
T Consensus       268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence            887632  345567788899999999999999999999999853211          1357788999998888764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.71  E-value=6.5e-18  Score=152.12  Aligned_cols=200  Identities=10%  Similarity=-0.057  Sum_probs=161.3

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+.+++.  ++|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|+
T Consensus       106 ~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (330)
T 3hym_B          106 KNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS  183 (330)
T ss_dssp             CHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            45568889999998  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC------------CChhhHHHHHHhhcCCCChHHHHHHhcCC-
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR------------DPRPVMREAYNMFKGGGDPEKLVAAFSSG-  249 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~------------d~~~~~~~a~~l~~~~~~~e~al~~~~~~-  249 (310)
                      ++++++|+++..+...+.+....|++++|...+.++..            .....+......+...|++++|+..+... 
T Consensus       184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL  263 (330)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999876444333344478999999998776321            11122223333455578899988877532 


Q ss_pred             -CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHh-hcccC
Q 021611          250 -RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVH-SLCRN  306 (310)
Q Consensus       250 -~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~-~~~~~  306 (310)
                       ..++...+++.+|.++..+|++++|+.+|++++++.  +.+...+..++.++ ...|+
T Consensus       264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC
T ss_pred             hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCc
Confidence             234556678889999999999999999999999954  34568888898877 55554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=7.1e-18  Score=151.68  Aligned_cols=203  Identities=10%  Similarity=-0.036  Sum_probs=163.6

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...+|...+.+++.  .+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++.|
T Consensus        35 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  112 (327)
T 3cv0_A           35 ANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL  112 (327)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356778899999998  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceee--------------ee-hhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHH
Q 021611          182 RIDVAQNPNDTEESIWC--------------FL-CEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLV  243 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~--------------~l-~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al  243 (310)
                      +++++.+|++.......              .. .....|++++|+..+.++   .++....+......+...|++++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  192 (327)
T 3cv0_A          113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAA  192 (327)
T ss_dssp             HHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            99999999987643322              11 344678899999987763   3333333333333455578899988


Q ss_pred             HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      ..+...  ..++...++..+|.++...|++++|+.+|+++++..  +.+...+..+|.++..+|+|.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          193 ANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHH
Confidence            877532  234556677889999999999999999999999943  346688899999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.71  E-value=5.3e-18  Score=162.24  Aligned_cols=201  Identities=14%  Similarity=0.112  Sum_probs=134.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+.+++.  .+|+ +.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+
T Consensus       252 ~~~~A~~~~~~~l~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          252 DPLGAHEDIKKAIE--LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             CHHHHHHHHHHHHH--HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHh--hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            34455555666665  6677 77788888888888888888888888888888877788888888888888888888888


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCCC--Ccch---
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR--ENEY---  254 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~d~---  254 (310)
                      ++++++|+++..+...+.+....|++++|+..+.++   .++....+......+...|++++|+..+....  .++.   
T Consensus       329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  408 (514)
T 2gw1_A          329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI  408 (514)
T ss_dssp             HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence            888888877664333333334677788887776653   23222222222233444667777766654211  1111   


Q ss_pred             ---hHhhhhhhhhhhh---ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          255 ---FYASLYAGLFYES---QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       255 ---~~a~~~lG~~~~~---~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                         ..+++.+|.++..   +|++++|+.+|+++++..  +.+...+..+|.++..+|+|.
T Consensus       409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~  466 (514)
T 2gw1_A          409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDID  466 (514)
T ss_dssp             SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHH
Confidence               2366678888888   888888888888888743  345677778888888888763

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.70  E-value=4.4e-18  Score=166.71  Aligned_cols=196  Identities=12%  Similarity=-0.004  Sum_probs=154.5

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheecccc-ccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV-VGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~-~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..+...+.....  .+|+++.+|+.+|.++...|++ ++|++.|+++++++|+++.+|+.+|.++..+|++++|++.|++
T Consensus        85 ~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           85 EKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345555666666  7889999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccceeeeehhh--hh---------cChHHHHHhHHHh---cCCChhhHHHHHHhhcCC--------CChHH
Q 021611          184 DVAQNPNDTEESIWCFLCEA--QL---------YGVDEARNRFLEV---GRDPRPVMREAYNMFKGG--------GDPEK  241 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a--~l---------~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~--------~~~e~  241 (310)
                      +++++|+ +.  ++..++..  .+         |++++|+..+.++   .++....+......+...        +++++
T Consensus       163 al~~~p~-~~--~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          163 ALTHCKN-KV--SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHTTCCC-HH--HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHhhCCC-HH--HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            9999998 44  44444443  67         8899999988773   344333332222222222        66888


Q ss_pred             HHHHhcCC--CCc---chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          242 LVAAFSSG--REN---EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       242 al~~~~~~--~~~---d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      |+..+...  ..|   +...+++.+|.++..+|++++|+.+|++|+++.  +...+.+..++.++...|++
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH
Confidence            88777532  245   667788899999999999999999999999954  34567888898888877654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.69  E-value=1.4e-17  Score=144.88  Aligned_cols=151  Identities=8%  Similarity=-0.017  Sum_probs=96.8

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHH----------------hhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIR----------------RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG  165 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~----------------rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G  165 (310)
                      +.+.+|...|.+++.  ++|+++.+|+.                +|.++..+|++++|+..|+++++++|+++.+++++|
T Consensus        18 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           18 GQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             TCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            345566666666666  67777777776                777777777777777777777777777777777777


Q ss_pred             cchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHH
Q 021611          166 LSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLV  243 (310)
Q Consensus       166 ~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al  243 (310)
                      .++..+|++++|++.|+++++++|+++.+  |..++..  ..+.                             ...+.+.
T Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~~~-----------------------------~~~~~~~  144 (208)
T 3urz_A           96 EMQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAE-----------------------------QEKKKLE  144 (208)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHH-----------------------------HHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHhH-----------------------------HHHHHHH
Confidence            77777777777777777777777766553  3222222  1111                             1112222


Q ss_pred             HHhcCCC-CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          244 AAFSSGR-ENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       244 ~~~~~~~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      ..+.... ..+...+++.+|..+..+|++++|+.+|++|+++.
T Consensus       145 ~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          145 TDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            2332222 22334567789999999999999999999999954

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.69  E-value=2.2e-17  Score=159.40  Aligned_cols=200  Identities=17%  Similarity=0.151  Sum_probs=149.4

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..+|...+.+++.  .+|+ +.+++.+|.++...|++++|++.|+++++++|+++.++..+|.++...|++++|++.|++
T Consensus       259 ~~~A~~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          259 LLDAQVLLQESIN--LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHH--HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3566677777776  7888 888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCCC--Ccc-----
Q 021611          184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR--ENE-----  253 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~d-----  253 (310)
                      +++++|+++..+...+.+....|++++|+..+.++   .++....+......+...|++++|+..+....  .++     
T Consensus       336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  415 (537)
T 3fp2_A          336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH  415 (537)
T ss_dssp             HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence            99999988764443333444788999998887663   33333333333334455778888777664211  111     


Q ss_pred             -hhHhhhhhhhhhhhc----------cchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          254 -YFYASLYAGLFYESQ----------KKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       254 -~~~a~~~lG~~~~~~----------G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                       .....+.+|.++..+          |++++|+.+|+++++..  +.+.+.+..+|.++..+|+|.
T Consensus       416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHH
Confidence             111234567788888          99999999999999843  346688889999999999864

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.68  E-value=1.7e-17  Score=150.42  Aligned_cols=204  Identities=13%  Similarity=0.110  Sum_probs=161.0

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.+.+|...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++.
T Consensus        16 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~   93 (359)
T 3ieg_A           16 AGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD   93 (359)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence            3456789999999998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCC---CCCccceee------------eehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHH
Q 021611          181 FRIDVAQNP---NDTEESIWC------------FLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKL  242 (310)
Q Consensus       181 f~~Al~l~P---~d~~~~~~~------------~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~a  242 (310)
                      |+++++++|   +++......            +......|++++|+..+.++   .++....+......+...|+++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  173 (359)
T 3ieg_A           94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA  173 (359)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence            999999999   776533222            12233678999999988774   333333333333445557889998


Q ss_pred             HHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHH------------HHHHHhhcccCCc
Q 021611          243 VAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMA------------ALAKVHSLCRNWS  308 (310)
Q Consensus       243 l~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~------------~la~~~~~~~~~~  308 (310)
                      +..+..  ...|+...+++.+|.++..+|++++|+..|+++++...  .....+.            .+|..+...|+|.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  251 (359)
T 3ieg_A          174 ISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYT  251 (359)
T ss_dssp             HHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            887752  33455667788899999999999999999999998432  3333322            3477788888763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.68  E-value=6.1e-17  Score=141.58  Aligned_cols=189  Identities=12%  Similarity=0.062  Sum_probs=143.6

Q ss_pred             CCchhH-HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611          118 NNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI  196 (310)
Q Consensus       118 ~~~P~~-~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~  196 (310)
                      +.+|.+ +.+|+.+|.++...|++++|++.|+++++++|++..+++.+|.++...|++++|++.|+++++++|+++..+.
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            367876 8999999999999999999999999999999999999999999999999999999999999999998766433


Q ss_pred             eeeehhhhhcChHHHHHhHHHhcC---CChh--hHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhcc
Q 021611          197 WCFLCEAQLYGVDEARNRFLEVGR---DPRP--VMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQK  269 (310)
Q Consensus       197 ~~~l~~a~l~~~~eA~~~l~~~~~---d~~~--~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G  269 (310)
                      ..+.+....|++++|+..+.++..   .+..  .+......+...|++++++..+...  ..++...+++.+|.++..+|
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g  189 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER  189 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence            333334478889999998887644   2221  1122222344567888887776522  23444566778999999999


Q ss_pred             chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          270 KADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       270 ~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      ++++|+.+|+++++..  +.+.+.+..++.++...|++.
T Consensus       190 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~  226 (252)
T 2ho1_A          190 EYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRD  226 (252)
T ss_dssp             CHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHH
Confidence            9999999999999843  345677788888888888753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.68  E-value=6.3e-18  Score=148.91  Aligned_cols=181  Identities=14%  Similarity=0.128  Sum_probs=94.8

Q ss_pred             ccchhhhhhhhcCC--CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       104 ~~~a~~~~~~ai~~--~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      ..+|...+.+++..  ..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|++.|
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  100 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF  100 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            44455555555441  0134555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCCh---------------------------------hh
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPR---------------------------------PV  225 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~---------------------------------~~  225 (310)
                      +++++++|+++..+...+.+....|++++|+..+.++   .++..                                 ..
T Consensus       101 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  180 (275)
T 1xnf_A          101 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG  180 (275)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred             HHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH
Confidence            5555555554443222222223445555555544432   11111                                 11


Q ss_pred             HHHHHHhhcCCCChHHHHHHhcCC--CCc----chhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          226 MREAYNMFKGGGDPEKLVAAFSSG--REN----EYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       226 ~~~a~~l~~~~~~~e~al~~~~~~--~~~----d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      +..+ ..+...++.++++..+...  ..+    +....++.+|.++..+|++++|+.+|+++++..
T Consensus       181 ~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          181 WNIV-EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HHHH-HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHH-HHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            1111 1222334445555544321  111    225677889999999999999999999999954

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.67  E-value=3.5e-17  Score=154.77  Aligned_cols=200  Identities=12%  Similarity=0.054  Sum_probs=130.8

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      +.....+..++.  .+|+++.+|+.+|..++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++
T Consensus         9 ~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A            9 SGVDLGTENLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345555666666  788888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChhh-----HHHH------------HHhhcCCCChHHHHHHh
Q 021611          185 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRPV-----MREA------------YNMFKGGGDPEKLVAAF  246 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~~-----~~~a------------~~l~~~~~~~e~al~~~  246 (310)
                      ++++|+++.++...+.+....|++++|+..+.++.. +|...     +...            ...+...|++++|+..+
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  166 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL  166 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888887765433333334467888888887776432 22211     1111            11233356777777666


Q ss_pred             cCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          247 SSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       247 ~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      ...  ..++...+++.+|.++..+|++++|+..|+++++..  +.+...+..+|.++..+|+|.
T Consensus       167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~  228 (450)
T 2y4t_A          167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHE  228 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence            421  234445566778888888888888888888888732  345677778888888887763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.67  E-value=4.9e-17  Score=138.39  Aligned_cols=188  Identities=13%  Similarity=-0.004  Sum_probs=145.1

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      .+|+++.+|+.+|.++...|++++|++.|+++++++|++..+++.+|.++...|++++|++.|+++++++|+++..+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999887644333


Q ss_pred             eehhhhh-cChHHHHHhHHHhcC---CCh--hhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611          199 FLCEAQL-YGVDEARNRFLEVGR---DPR--PVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK  270 (310)
Q Consensus       199 ~l~~a~l-~~~~eA~~~l~~~~~---d~~--~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~  270 (310)
                      +.+.... |++++|+..+.++..   .+.  ..+......+...|++++++..+...  ..++...+++.+|.++..+|+
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence            3344478 899999998887544   221  12222223445578888887777522  234445677789999999999


Q ss_pred             hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      +++|+.+|+++++... ..+...+..++.++...|++
T Consensus       163 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  198 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNA  198 (225)
T ss_dssp             HHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcH
Confidence            9999999999998432 14557777778887777764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.66  E-value=1.6e-17  Score=146.65  Aligned_cols=203  Identities=10%  Similarity=-0.036  Sum_probs=157.6

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh----HHHhhccchhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA----YLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~----a~~~~G~a~~~lg~~~eA  177 (310)
                      +.+.+|...+.+++.  .+|+++.+++.+|.++...|++++|++.|+++++ .|.++.    ++..+|.++..+|++++|
T Consensus        17 ~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A   93 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLA   93 (272)
T ss_dssp             TCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence            356779999999998  9999999999999999999999999999999999 554444    489999999999999999


Q ss_pred             hhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC---CChhhHHHHH-HhhcCCCChHHHHHHhcCC--CC
Q 021611          178 AEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR---DPRPVMREAY-NMFKGGGDPEKLVAAFSSG--RE  251 (310)
Q Consensus       178 ~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~---d~~~~~~~a~-~l~~~~~~~e~al~~~~~~--~~  251 (310)
                      ++.|+++++++|+++..+...+.+....|++++|+..+.++..   +....+.... ..+. .+++++|+..+...  ..
T Consensus        94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELK  172 (272)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence            9999999999999887544333444478999999999988543   2222222222 3333 34888888877532  34


Q ss_pred             cchhHhhhhhhhhhhhccc---hhhHHHHHHHhhcCCCCCCC------hHHHHHHHHHhhcccCCc
Q 021611          252 NEYFYASLYAGLFYESQKK---ADAAKLHILAACESPYGQRS------DDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       252 ~d~~~a~~~lG~~~~~~G~---~d~A~~~~~kAl~~~~~~~s------~~~~~~la~~~~~~~~~~  308 (310)
                      |+...+++.+|.++..+|+   +++|+.+|++++++.....+      .+.+..+|.++...|++.
T Consensus       173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            5556788889999999999   99999999999984211111      146677899999998863

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.66  E-value=1.7e-17  Score=139.41  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=100.7

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      .-+.+.+++.  ++|+++.+++.+|.+++.+|++++|+..|+++++++|+++.+|+++|.++..+|+|++|+++|+++++
T Consensus        21 ~~~~l~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           21 SGATLKDINA--IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             TSCCTGGGCC--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            3456677787  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      ++|+++.+++..+.+..++|++++|+..+.++
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999986665656666899999999998874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.66  E-value=2.1e-17  Score=151.94  Aligned_cols=205  Identities=14%  Similarity=0.060  Sum_probs=162.4

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHH----------------hh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW----------------QR  164 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~----------------~~  164 (310)
                      .+...+|...+.+++.  ++|+++.+++.+|.++...|++++|++.|+++++++|++...+.                ..
T Consensus       111 ~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 1fch_A          111 NEQELLAISALRRCLE--LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL  188 (368)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred             CcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence            3456778899999998  99999999999999999999999999999999999999887776                56


Q ss_pred             ccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh--hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCCh
Q 021611          165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDP  239 (310)
Q Consensus       165 G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~  239 (310)
                      |.++ ..|++++|++.|+++++++|++..+..+..++.  ...|++++|+..+.++   .++....+......+...|++
T Consensus       189 ~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  267 (368)
T 1fch_A          189 GSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS  267 (368)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence            6666 999999999999999999999433334544444  3789999999988763   343333333333445557889


Q ss_pred             HHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC---------CChHHHHHHHHHhhcccCCc
Q 021611          240 EKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ---------RSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       240 e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~---------~s~~~~~~la~~~~~~~~~~  308 (310)
                      ++|+..+...  ..|+...+++.+|.++..+|++++|+.+|++++++....         .....+..++.++..+|++.
T Consensus       268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            9988877532  245566778889999999999999999999999853221         12578889999999999875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.66  E-value=9.2e-17  Score=138.86  Aligned_cols=184  Identities=12%  Similarity=0.020  Sum_probs=130.6

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  202 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~  202 (310)
                      .+.+|+.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|++.|+++++++|+++..+...+.+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999998876444333344


Q ss_pred             hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHH
Q 021611          203 AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLH  277 (310)
Q Consensus       203 a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~  277 (310)
                      ...|++++|+..+.++   .++....+......+...|++++++..+...  ..++...+++.+|.++...|++++|+..
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4789999999988764   3333333333333455578899888777532  2344556777899999999999999999


Q ss_pred             HHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          278 ILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       278 ~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      |+++++..  +.+...+..++.++...|++.
T Consensus       182 ~~~~~~~~--~~~~~~~~~la~~~~~~~~~~  210 (243)
T 2q7f_A          182 FAAVTEQD--PGHADAFYNAGVTYAYKENRE  210 (243)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHhC--cccHHHHHHHHHHHHHccCHH
Confidence            99999943  345688889999999999875

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.66  E-value=3.9e-17  Score=146.78  Aligned_cols=205  Identities=10%  Similarity=0.032  Sum_probs=158.6

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh--------------cc-
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR--------------GL-  166 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~--------------G~-  166 (310)
                      +...+|...+.+++.  ++|+++.++..+|.++...|++++|+..|+++++++|++...+..+              |. 
T Consensus        69 ~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (327)
T 3cv0_A           69 EKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF  146 (327)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred             CCHHHHHHHHHHHHh--cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence            356678899999998  8999999999999999999999999999999999999999888887              77 


Q ss_pred             chhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHH
Q 021611          167 SLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLV  243 (310)
Q Consensus       167 a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al  243 (310)
                      ++...|++++|++.|+++++.+|+++..+...+.+....|++++|+..+.++   .++....+......+...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            8999999999999999999999988764333333344789999999988764   3333333333333455578899988


Q ss_pred             HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC----C------ChHHHHHHHHHhhcccCCc
Q 021611          244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ----R------SDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~----~------s~~~~~~la~~~~~~~~~~  308 (310)
                      ..+...  ..++...+++.+|.++..+|++++|+.+|+++++.....    .      ....+..++.++..+|++.
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            777532  234556678889999999999999999999999843210    0      4577789999999998863

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.66  E-value=8.3e-17  Score=145.92  Aligned_cols=201  Identities=13%  Similarity=0.068  Sum_probs=161.0

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+...+|...+.+++.  .+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|++.
T Consensus       133 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  210 (359)
T 3ieg_A          133 GADYTAAITFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE  210 (359)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3356778999999998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceee------------eehhhhhcChHHHHHhHHHh---cCCChhhHHH----HHHhhcCCCChHH
Q 021611          181 FRIDVAQNPNDTEESIWC------------FLCEAQLYGVDEARNRFLEV---GRDPRPVMRE----AYNMFKGGGDPEK  241 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~------------~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~----a~~l~~~~~~~e~  241 (310)
                      |+++++++|++.....+.            +......|++++|...+.++   .++.......    ....+...|++++
T Consensus       211 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  290 (359)
T 3ieg_A          211 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE  290 (359)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence            999999999987643322            12233678999999988764   3332222111    2223445788999


Q ss_pred             HHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          242 LVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       242 al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      |+..+...  ..|+...+++.+|.++..+|++++|+.+|++++++.  +.+.+....|+.++...+
T Consensus       291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Confidence            88877532  245566788889999999999999999999999954  356677778888776554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.66  E-value=2.9e-17  Score=155.30  Aligned_cols=204  Identities=14%  Similarity=0.129  Sum_probs=160.7

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+...+|...|++++.  .+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|++.
T Consensus        39 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  116 (450)
T 2y4t_A           39 AGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD  116 (450)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3467789999999998  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCC---ccceee------------eehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHH
Q 021611          181 FRIDVAQNPNDT---EESIWC------------FLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKL  242 (310)
Q Consensus       181 f~~Al~l~P~d~---~~~~~~------------~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~a  242 (310)
                      |+++++++|++.   ..+...            +......|++++|+..+.++   .++....+......+...|++++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  196 (450)
T 2y4t_A          117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA  196 (450)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGG
T ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence            999999999876   422111            11233678999999988764   333333333333445557888888


Q ss_pred             HHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHH------------HHHhhcccCCc
Q 021611          243 VAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAAL------------AKVHSLCRNWS  308 (310)
Q Consensus       243 l~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l------------a~~~~~~~~~~  308 (310)
                      +..+...  ..++...+++.+|.++...|++++|+.+|+++++..  +.+...+..+            +.++...|+|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  274 (450)
T 2y4t_A          197 ISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT  274 (450)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            8777532  234556778889999999999999999999999843  2344554444            88888888763

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.65  E-value=1.1e-16  Score=157.15  Aligned_cols=203  Identities=12%  Similarity=0.004  Sum_probs=159.3

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...++..++.+++.  .+|+++.+|..+|.++...|++++|++.|+++++++|++..+|..+|.++...|++++|++.|
T Consensus       353 g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  430 (597)
T 2xpi_A          353 GEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY  430 (597)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345567777777776  789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--------CC
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--------GR  250 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--------~~  250 (310)
                      +++++++|++...+.....+..+.|++++|...+.++   .++....+......+...|++++|+..+..        ..
T Consensus       431 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  510 (597)
T 2xpi_A          431 TTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS  510 (597)
T ss_dssp             HHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence            9999999988764333333344789999999988764   333223333333345557888888777642        22


Q ss_pred             Ccch-hHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          251 ENEY-FYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       251 ~~d~-~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      .++. ...+..+|.++...|++++|+..|+++++..  +.+...+..++.++...|+|.
T Consensus       511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~  567 (597)
T 2xpi_A          511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPG  567 (597)
T ss_dssp             CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHH
T ss_pred             chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHH
Confidence            3332 5567789999999999999999999999843  346688889999999999885

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=3.4e-17  Score=142.26  Aligned_cols=194  Identities=10%  Similarity=0.037  Sum_probs=144.9

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-------hhHHHhhccchhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-------KAYLWQRGLSLYYLDRF  174 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-------~~a~~~~G~a~~~lg~~  174 (310)
                      +.+.+|...+.+++.  .+ +++.+++.+|.++...|++++|+..|+++++++|++       ..+++.+|.++..+|++
T Consensus        19 ~~~~~A~~~~~~a~~--~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (258)
T 3uq3_A           19 RQFDEAIEHYNKAWE--LH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL   95 (258)
T ss_dssp             TCHHHHHHHHHHHHH--HS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHHHH--hh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence            356678888888887  66 888999999999999999999999999999999987       68899999999999999


Q ss_pred             hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CCh--hhHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611          175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPR--PVMREAYNMFKGGGDPEKLVAAFSSG--  249 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~--~~~~~a~~l~~~~~~~e~al~~~~~~--  249 (310)
                      ++|++.|+++++++|+.        -....+|++++|...+.++.. +|.  ..+......+...|++++++..+...  
T Consensus        96 ~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  167 (258)
T 3uq3_A           96 KKTIEYYQKSLTEHRTA--------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK  167 (258)
T ss_dssp             HHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchh--------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999999988751        123356777777777766432 222  11222222344467788877766522  


Q ss_pred             CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      ..++...+++.+|.++..+|++++|+.+|+++++..  +...+.+..+|.++..+|+|.
T Consensus       168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHH
Confidence            234445667778888888888888888888888843  345677788888888888763

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.65  E-value=1.1e-16  Score=147.00  Aligned_cols=200  Identities=12%  Similarity=0.051  Sum_probs=157.2

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhhee-------cccc-------ccchhhhhhccc-cCcchhhHHHhhccchh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDV-------VGSVAEFDKAIE-LDPRQKAYLWQRGLSLY  169 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~-------~g~~-------~eAl~~f~kAl~-l~P~~~~a~~~~G~a~~  169 (310)
                      ..+...|.+++.  .+|+++.+|+.+|..+..       .|++       ++|+..|++|++ ++|++..+|..+|.++.
T Consensus        33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            467789999998  999999999999999874       5887       999999999999 79999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC---CChhhH-HHHHHhhcCCCChHHHH
Q 021611          170 YLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR---DPRPVM-REAYNMFKGGGDPEKLV  243 (310)
Q Consensus       170 ~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~---d~~~~~-~~a~~l~~~~~~~e~al  243 (310)
                      ..|++++|++.|+++++++|+++.. +|..++..  +.|++++|+..+.++..   .....+ ..+...+...|++++|.
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHH-HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999988751 45554443  68999999999888543   222222 12222222367888888


Q ss_pred             HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC-CCC-CChHHHHHHHHHhhcccCC
Q 021611          244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESP-YGQ-RSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~-~~~-~s~~~~~~la~~~~~~~~~  307 (310)
                      +.+...  ..|+...++..+|.++..+|++++|+..|++|++.. .++ .+...+..++.++..+|++
T Consensus       190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~  257 (308)
T 2ond_A          190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            877633  234556677778899999999999999999999952 222 3567777888888888875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.64  E-value=2e-17  Score=169.32  Aligned_cols=177  Identities=13%  Similarity=0.091  Sum_probs=116.0

Q ss_pred             cccchhhhhhhhc--------CCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611          103 FIPSVSGIWDALT--------GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF  174 (310)
Q Consensus       103 ~~~~a~~~~~~ai--------~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~  174 (310)
                      ...+|...+++++        .  .+|+++.+++.+|.++..+|++++|++.|+++++++|+++.+|+++|.++..+|++
T Consensus       406 ~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  483 (681)
T 2pzi_A          406 QPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY  483 (681)
T ss_dssp             CHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence            4556778888888        5  88999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611          175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--  249 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--  249 (310)
                      ++|++.|+++++++|+++.++...+.+..++|++++ +..+.++   .++....+......+...|++++|++.+...  
T Consensus       484 ~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  562 (681)
T 2pzi_A          484 DSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP  562 (681)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence            999999999999999998755444444446777777 6666542   2222222212222223344444444444422  


Q ss_pred             CCcchhHhhhhhhhhhhhccchhhH-HHHHHHhh
Q 021611          250 RENEYFYASLYAGLFYESQKKADAA-KLHILAAC  282 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~G~~d~A-~~~~~kAl  282 (310)
                      .+|+...+++.+|.++...|+.+++ ...+++|+
T Consensus       563 l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~  596 (681)
T 2pzi_A          563 TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA  596 (681)
T ss_dssp             TSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence            2333344444444444444443333 33333333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.63  E-value=3.4e-16  Score=139.25  Aligned_cols=188  Identities=10%  Similarity=-0.043  Sum_probs=132.7

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-c
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-E  194 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-~  194 (310)
                      ++|+++..++.+|..++..|++++|+..|+++++.+|++   +.+++.+|.+++.+|+|++|++.|++++++.|+++. .
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            678888899999999999999999999999999998888   888899999999999999999999999999887653 2


Q ss_pred             ceeeeehh--hh--------hcChHHHHHhHHHh---cCCChhhH-----------------HHHHHhhcCCCChHHHHH
Q 021611          195 SIWCFLCE--AQ--------LYGVDEARNRFLEV---GRDPRPVM-----------------REAYNMFKGGGDPEKLVA  244 (310)
Q Consensus       195 ~~~~~l~~--a~--------l~~~~eA~~~l~~~---~~d~~~~~-----------------~~a~~l~~~~~~~e~al~  244 (310)
                      .++..++.  ..        .|++++|+..+.++   .|+.....                 ......+...|++++|+.
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  169 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV  169 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            23333333  35        78888888887763   23221111                 112233445788888887


Q ss_pred             HhcCC----C-CcchhHhhhhhhhhhhhc----------cchhhHHHHHHHhhcCCCCC-CChHHHHHHHHHhhcccC
Q 021611          245 AFSSG----R-ENEYFYASLYAGLFYESQ----------KKADAAKLHILAACESPYGQ-RSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       245 ~~~~~----~-~~d~~~a~~~lG~~~~~~----------G~~d~A~~~~~kAl~~~~~~-~s~~~~~~la~~~~~~~~  306 (310)
                      .+...    + .+....+++.+|.++..+          |++++|+.+|+++++..... ........++.++...|+
T Consensus       170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence            77521    2 222556788899999877          99999999999999832211 112344455666655443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=6.4e-17  Score=134.09  Aligned_cols=146  Identities=9%  Similarity=-0.047  Sum_probs=84.0

Q ss_pred             hhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChH
Q 021611          130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVD  209 (310)
Q Consensus       130 rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~  209 (310)
                      +|.++..+|++++|++.|.+++..+|+++.+++.+|.+|+.+|+|++|++.|+++++++|+++.++...+.+..++|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            55566666666666666666666666666666666666666666666666666666666665553333333333455555


Q ss_pred             HHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHH-HHHhhcCCCCC
Q 021611          210 EARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLH-ILAACESPYGQ  288 (310)
Q Consensus       210 eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~-~~kAl~~~~~~  288 (310)
                      +|+..+.++..                             .+|+...+++.+|.++..+|++++|... +++|+++.  +
T Consensus        83 ~A~~~~~~al~-----------------------------~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P  131 (150)
T 4ga2_A           83 KAVECYRRSVE-----------------------------LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--P  131 (150)
T ss_dssp             HHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--T
T ss_pred             HHHHHHHHHHH-----------------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--c
Confidence            55554443100                             1123334556788888888888876665 58888854  3


Q ss_pred             CChHHHHHHHHHhhcccC
Q 021611          289 RSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       289 ~s~~~~~~la~~~~~~~~  306 (310)
                      .++..+...+.++...|+
T Consensus       132 ~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          132 GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             TCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            456676677887777764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.63  E-value=1.5e-16  Score=139.96  Aligned_cols=157  Identities=16%  Similarity=0.055  Sum_probs=113.1

Q ss_pred             HHHHhhhhheeccccccchhhhhhcccc----CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIEL----DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC  201 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l----~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~  201 (310)
                      ..+.++..+...|++++|+..|+++++.    +|.++.+++.+|.++...|++++|++.|+++++++|+++..+...+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~   86 (275)
T 1xnf_A            7 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY   86 (275)
T ss_dssp             CGGGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cCcceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            4456777888899999999999999998    467899999999999999999999999999999999987754433334


Q ss_pred             hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          202 EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                      ....|++++|+..+.++   .++....+......+...|++++|+..+...  ..|+......+.+.+ ..+|++++|+.
T Consensus        87 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~  165 (275)
T 1xnf_A           87 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE  165 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH
Confidence            44789999999988774   3333333333333455578888887777521  122223333333333 45577777777


Q ss_pred             HHHHhhc
Q 021611          277 HILAACE  283 (310)
Q Consensus       277 ~~~kAl~  283 (310)
                      .|++++.
T Consensus       166 ~~~~~~~  172 (275)
T 1xnf_A          166 VLKQHFE  172 (275)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.62  E-value=2.2e-16  Score=152.43  Aligned_cols=89  Identities=15%  Similarity=0.119  Sum_probs=76.2

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.+.+|...|.+++.  .+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.
T Consensus        38 ~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  115 (537)
T 3fp2_A           38 AKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD  115 (537)
T ss_dssp             TTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3366789999999998  99999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhccCCCCC
Q 021611          181 FRIDVAQNPNDT  192 (310)
Q Consensus       181 f~~Al~l~P~d~  192 (310)
                      |+ ++.++|+..
T Consensus       116 ~~-~~~~~~~~~  126 (537)
T 3fp2_A          116 LS-VLSLNGDFD  126 (537)
T ss_dssp             HH-HHC------
T ss_pred             HH-HHhcCCCCC
Confidence            85 777776644

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.62  E-value=1.6e-16  Score=155.92  Aligned_cols=200  Identities=11%  Similarity=-0.013  Sum_probs=162.1

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      .+.+...+|...|.+++.  ++|+++.+|..+|.++...|++++|++.|+++++++|++..++..+|.++...|++++|+
T Consensus       384 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  461 (597)
T 2xpi_A          384 LCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN  461 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence            334467788888998888  899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh-------cCCCh---hhHHHHHHhhcCCCChHHHHHHhcC
Q 021611          179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV-------GRDPR---PVMREAYNMFKGGGDPEKLVAAFSS  248 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~-------~~d~~---~~~~~a~~l~~~~~~~e~al~~~~~  248 (310)
                      +.|+++++++|+++..+.....+..+.|++++|+..+.++       ..+|.   ..+......+...|++++|+..+..
T Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999998764333333344789999999988774       22343   2233333445568899998887753


Q ss_pred             C--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611          249 G--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS  302 (310)
Q Consensus       249 ~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~  302 (310)
                      .  ..|+...++..+|.+|...|++++|+.+|++++++.  +.+...+..|+.++.
T Consensus       542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTC
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHh
Confidence            2  235556778889999999999999999999999954  356688888887764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=4.2e-16  Score=136.24  Aligned_cols=181  Identities=14%  Similarity=0.017  Sum_probs=146.0

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...+|...+.+++.  .+|+++.+++.+|.++...|++++|++.|+++++++|++..++..+|.++...|++++|++.|
T Consensus        51 ~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  128 (252)
T 2ho1_A           51 GNTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL  128 (252)
T ss_dssp             TCTGGGHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            356778899999998  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhc--cCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcch
Q 021611          182 RIDVA--QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEY  254 (310)
Q Consensus       182 ~~Al~--l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~  254 (310)
                      +++++  .+|+++..+...+.+....|++++|...+.++   .++....+......+...|++++|+..+..  ...++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  208 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN  208 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            99999  67766553333333344789999999988774   333333333333345557889988877752  234455


Q ss_pred             hHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          255 FYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      ..++..++.++..+|++++|..+++++++.
T Consensus       209 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            566778999999999999999999999994

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.61  E-value=1.6e-15  Score=133.79  Aligned_cols=181  Identities=11%  Similarity=0.039  Sum_probs=141.5

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc--eeeee
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES--IWCFL  200 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~--~~~~l  200 (310)
                      ++++++.+|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.|+++++ .|+++...  .+..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999 56555421  13333


Q ss_pred             h--hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhh
Q 021611          201 C--EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADA  273 (310)
Q Consensus       201 ~--~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~  273 (310)
                      +  ....|++++|+..+.++   .++....+......+...|++++|+..+..  ...+....+++.+|......+++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            3  44789999999988764   344333443444455568899999998863  3356677788889943444569999


Q ss_pred             HHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          274 AKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       274 A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      |+.+|+++++..  +.+...+..++.++..+|+
T Consensus       161 A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          161 ADSSFVKVLELK--PNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHHHHHS--TTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhC--ccchHHHHHHHHHHHHcCc
Confidence            999999999944  3456788889999988887

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=1.4e-16  Score=133.82  Aligned_cols=163  Identities=12%  Similarity=0.088  Sum_probs=133.7

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+.+.+|...|.+++.  ++|+++.+|+.+|.++..+|++++|+..+.+++..+|+++.++..+|.++...+++++|++
T Consensus        17 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   94 (184)
T 3vtx_A           17 TKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAID   94 (184)
T ss_dssp             HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHH
Confidence            44567889999999998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhH
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFY  256 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~  256 (310)
                      .+.++++++|+++......+.+..++|++++|+..+.++   .|+....+......+...|++++|+..+......++..
T Consensus        95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A           95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            999999999999875554444555889999999988763   44443433333345556889999998887544444445


Q ss_pred             hhhhhhhh
Q 021611          257 ASLYAGLF  264 (310)
Q Consensus       257 a~~~lG~~  264 (310)
                      +.+.+|++
T Consensus       175 a~~~lali  182 (184)
T 3vtx_A          175 AKYELALV  182 (184)
T ss_dssp             HHHCSCCS
T ss_pred             HHHHHHhh
Confidence            66677754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.59  E-value=2.3e-16  Score=130.75  Aligned_cols=113  Identities=11%  Similarity=0.023  Sum_probs=98.0

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      ++....+...+.+++.  .+|+++.+++.+|.+|+.+|++++|++.|+++|+++|+++.+|+++|.++..+|++++|+..
T Consensus        10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A           10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            3356678888888888  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHHhH
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  215 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l  215 (310)
                      |+++++++|+++.++...+.+..+.|++++|...+
T Consensus        88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~  122 (150)
T 4ga2_A           88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW  122 (150)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence            99999999999875443333344677777665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.59  E-value=2e-16  Score=154.97  Aligned_cols=176  Identities=12%  Similarity=0.036  Sum_probs=144.5

Q ss_pred             cc-cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh---------h
Q 021611          103 FI-PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL---------D  172 (310)
Q Consensus       103 ~~-~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l---------g  172 (310)
                      .+ .+|...|.+++.  ++|+++.+|+.+|.++..+|++++|++.|+++++++|+ ..++.++|.++..+         |
T Consensus       117 ~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g  193 (474)
T 4abn_A          117 DYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSR  193 (474)
T ss_dssp             SCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred             ccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhh
Confidence            45 789999999998  99999999999999999999999999999999999999 69999999999999         9


Q ss_pred             hhhhhhhhhhhhhccCCCCCccceeeeehhhhh--------cChHHHHHhHHHhcC-CC-----hhhHHHHHHhhcCCCC
Q 021611          173 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------YGVDEARNRFLEVGR-DP-----RPVMREAYNMFKGGGD  238 (310)
Q Consensus       173 ~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l--------~~~~eA~~~l~~~~~-d~-----~~~~~~a~~l~~~~~~  238 (310)
                      ++++|++.|+++++++|+++..+...+.+...+        |++++|+..+.++.. +|     ...+......+...|+
T Consensus       194 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~  273 (474)
T 4abn_A          194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES  273 (474)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence            999999999999999999987443333334466        889999999877432 33     2233333344555789


Q ss_pred             hHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611          239 PEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAA  281 (310)
Q Consensus       239 ~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kA  281 (310)
                      +++|+..+...  ..|+...++..+|.++..+|++++|+..+.+.
T Consensus       274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99998887632  34566677888999999999999999887665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.5e-16  Score=138.07  Aligned_cols=179  Identities=12%  Similarity=0.079  Sum_probs=142.7

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-----cc
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-----ES  195 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-----~~  195 (310)
                      |+.+.+|+.+|.+++..|++++|+..|+++++++ +++.+++.+|.++..+|++++|++.|+++++++|++..     ..
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            5778999999999999999999999999999999 88999999999999999999999999999999987621     12


Q ss_pred             eeeeehh--hhhcChHHHHHhHHHhcC-CChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccc
Q 021611          196 IWCFLCE--AQLYGVDEARNRFLEVGR-DPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKK  270 (310)
Q Consensus       196 ~~~~l~~--a~l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~  270 (310)
                      .+..++.  ..+|++++|+..+.++.. ++..   ..   +...+++++++..+..  ...++...+++.+|.++..+|+
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA---DI---LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---HH---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCchh---HH---HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            3444443  478999999999887432 2221   11   1223456666666542  2345567778889999999999


Q ss_pred             hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +++|+.+|+++++..  +.+...+..+|.++..+|+|.
T Consensus       155 ~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~  190 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFP  190 (258)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHH
Confidence            999999999999943  346788899999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.4e-15  Score=145.45  Aligned_cols=192  Identities=14%  Similarity=0.088  Sum_probs=152.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+.+++.  .+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+
T Consensus       285 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  362 (514)
T 2gw1_A          285 DSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS  362 (514)
T ss_dssp             CCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45667788888887  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChh------hHHHHHHhhcC---CCChHHHHHHhcCC-
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRP------VMREAYNMFKG---GGDPEKLVAAFSSG-  249 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~------~~~~a~~l~~~---~~~~e~al~~~~~~-  249 (310)
                      ++++.+|+++..+...+.+....|++++|...+.++   .++...      .+......+..   .|++++|+..+... 
T Consensus       363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~  442 (514)
T 2gw1_A          363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS  442 (514)
T ss_dssp             HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence            999999998875444444445789999999988764   222211      22233334445   78888888777532 


Q ss_pred             -CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHH
Q 021611          250 -RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALA  298 (310)
Q Consensus       250 -~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la  298 (310)
                       ..++...+++.+|.++..+|++++|+.+|++++++.  +.+.+.+..+.
T Consensus       443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~  490 (514)
T 2gw1_A          443 KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQAIT  490 (514)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHHHHH
Confidence             234556678889999999999999999999999954  34445555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=5.8e-16  Score=124.89  Aligned_cols=122  Identities=17%  Similarity=0.194  Sum_probs=102.2

Q ss_pred             chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeee
Q 021611          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF  199 (310)
Q Consensus       120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~  199 (310)
                      .++.+.++.++|.+++.+|+|++|++.|++||+++|+++.+|.++|.++..+|+|++|+++|+++++++|++...+.   
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---   80 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK---   80 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH---
Confidence            45778999999999999999999999999999999999999999999999999999999999999999997653100   


Q ss_pred             ehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611          200 LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHIL  279 (310)
Q Consensus       200 l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~  279 (310)
                                                                           ....+++.+|.++..+|++++|+.+|+
T Consensus        81 -----------------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~  107 (127)
T 4gcn_A           81 -----------------------------------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFH  107 (127)
T ss_dssp             -----------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----------------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                                                 011244569999999999999999999


Q ss_pred             HhhcCCCCCCChHHHHHHHHH
Q 021611          280 AACESPYGQRSDDYMAALAKV  300 (310)
Q Consensus       280 kAl~~~~~~~s~~~~~~la~~  300 (310)
                      ++++..   .+++....|..+
T Consensus       108 kal~~~---~~~~~~~~l~~l  125 (127)
T 4gcn_A          108 RSLSEF---RDPELVKKVKEL  125 (127)
T ss_dssp             HHHHHS---CCHHHHHHHHHH
T ss_pred             HHHhhC---cCHHHHHHHHHh
Confidence            999833   245665555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.57  E-value=9.1e-16  Score=129.32  Aligned_cols=73  Identities=12%  Similarity=0.082  Sum_probs=64.4

Q ss_pred             chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      ||...+.++.+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++| ++.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~   74 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS   74 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence            5666778899999999999999999999999999999999999999999999999999999999999999 664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=4.1e-16  Score=161.33  Aligned_cols=146  Identities=11%  Similarity=0.040  Sum_probs=122.1

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      .+.+...+|...|.+++.  ++|+++.+|+++|.++..+|++++|++.|++||+++|++..+|+++|.++..+|++++|+
T Consensus        20 ~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~   97 (723)
T 4gyw_A           20 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL   97 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344467789999999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHh
Q 021611          179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAF  246 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~  246 (310)
                      +.|+++++++|++++++...+.+...+|++++|++.+.+   +.++....+......+...++.+++.+.+
T Consensus        98 ~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~  168 (723)
T 4gyw_A           98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM  168 (723)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence            999999999999988655555555589999999998876   45554444444444555567766655444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.56  E-value=3.5e-15  Score=122.53  Aligned_cols=163  Identities=15%  Similarity=0.091  Sum_probs=121.7

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC  201 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~  201 (310)
                      .....++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|++.|+++++++|+++..+...+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45678888999999999999999999999999998888889999999999999999999999999988877643333333


Q ss_pred             hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          202 EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                      ....|++++|...+.++   .++....+......+...|++++++..+...  ..++...+++.+|.++..+|++++|..
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            44678888888877663   2332222222223344467788777666421  234445677789999999999999999


Q ss_pred             HHHHhhcC
Q 021611          277 HILAACES  284 (310)
Q Consensus       277 ~~~kAl~~  284 (310)
                      +++++++.
T Consensus       166 ~~~~~~~~  173 (186)
T 3as5_A          166 HFKKANEL  173 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999884

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.56  E-value=1.6e-16  Score=128.28  Aligned_cols=94  Identities=12%  Similarity=0.209  Sum_probs=88.7

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      -+.+.+.+|...|++++.  ++|+++.+|+++|.++..+|++++|+++|++||+++|+++.+|+++|.++..+|++++|+
T Consensus        24 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~  101 (126)
T 4gco_A           24 FKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQ  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHH
Confidence            344567789999999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCcc
Q 021611          179 EQFRIDVAQNPNDTEE  194 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~  194 (310)
                      ++|+++++++|+++++
T Consensus       102 ~~~~~al~l~P~~~~a  117 (126)
T 4gco_A          102 RAYEDALQVDPSNEEA  117 (126)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHCcCCHHH
Confidence            9999999999999763

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.55  E-value=3.5e-15  Score=133.05  Aligned_cols=195  Identities=13%  Similarity=0.080  Sum_probs=149.6

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDR  173 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~  173 (310)
                      +...+|...|.+++.    |+++.+++.+|.++..    .|++++|+..|+++++++  ++.+++++|.++..    .++
T Consensus        20 ~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~   93 (273)
T 1ouv_A           20 KDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN   93 (273)
T ss_dssp             TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC
Confidence            345667777777764    7778999999999999    999999999999999986  68899999999999    999


Q ss_pred             hhhhhhhhhhhhccCCCCCccceeeeehhhh----hcChHHHHHhHHHhcC-CChhhHHHHHHhhcC----CCChHHHHH
Q 021611          174 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEVGR-DPRPVMREAYNMFKG----GGDPEKLVA  244 (310)
Q Consensus       174 ~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~----l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~----~~~~e~al~  244 (310)
                      +++|++.|+++++.+  ++.+....+.....    .+++++|+..+.++.. ++...+.....++..    .+++++++.
T Consensus        94 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~  171 (273)
T 1ouv_A           94 TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALA  171 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            999999999999985  45533333333335    7889999999887533 333332222223332    678888888


Q ss_pred             HhcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc----ccCCc
Q 021611          245 AFSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL----CRNWS  308 (310)
Q Consensus       245 ~~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~----~~~~~  308 (310)
                      .+......+...+++.+|.+|..    .|++++|+.+|+++++..    ..+.+.+||.++..    .|++.
T Consensus       172 ~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~~~~~~  239 (273)
T 1ouv_A          172 SYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVTRNEK  239 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSSCCST
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCcccCHH
Confidence            87644333456778889999999    999999999999999943    35788899999998    77764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.54  E-value=1.3e-15  Score=126.10  Aligned_cols=109  Identities=11%  Similarity=0.117  Sum_probs=99.5

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      ...+.+++.  ++|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|++++++
T Consensus         7 ~~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            7 GGTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            356778888  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          188 NPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       188 ~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +|+++.++...+.+...+|++++|+..+.++
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999886555555556899999999988763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=2.4e-15  Score=127.84  Aligned_cols=180  Identities=13%  Similarity=-0.002  Sum_probs=140.3

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh-hhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-DRFEEGAEQ  180 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l-g~~~eA~~~  180 (310)
                      +...+|...+.+++.  .+|+++.+++.+|.++...|++++|++.|+++++++|++..++..+|.++... |++++|++.
T Consensus        22 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~   99 (225)
T 2vq2_A           22 QDYRQATASIEDALK--SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY   99 (225)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence            356778899999998  89999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             hhhhhc--cCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCc-
Q 021611          181 FRIDVA--QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--REN-  252 (310)
Q Consensus       181 f~~Al~--l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~-  252 (310)
                      |+++++  .+|++...+...+.+....|++++|+..+.++   .++....+......+...|++++|...+...  ..+ 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  179 (225)
T 2vq2_A          100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV  179 (225)
T ss_dssp             HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999  44443343222333344789999999988763   3333333323333444467888887777522  223 


Q ss_pred             chhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          253 EYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      +....+..++.++...|+.++|..+++++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            4444556677888999999999999999986

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=7.5e-15  Score=130.91  Aligned_cols=186  Identities=12%  Similarity=0.053  Sum_probs=115.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRF  174 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~  174 (310)
                      ...+|...|.+++.  .  +++.+++.+|.++..    .|++++|+..|+++++++  ++.+++++|.++..    .|++
T Consensus        57 ~~~~A~~~~~~a~~--~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           57 NLKKAASFYAKACD--L--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             CHHHHHHHHHHHHH--T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CHHHHHHHHHHHHH--C--CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence            34456666666655  3  267777788888877    788888888888887764  66777778888777    7888


Q ss_pred             hhhhhhhhhhhccCCCCCccceeeeehhhh----hcChHHHHHhHHHhcC-CChhhHHHHHHhhcC----CCChHHHHHH
Q 021611          175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEVGR-DPRPVMREAYNMFKG----GGDPEKLVAA  245 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~----l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~----~~~~e~al~~  245 (310)
                      ++|++.|+++++.++  +.+....+.....    .+++++|+..+.++.. +....+.....++..    .+++++|+..
T Consensus       131 ~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~  208 (273)
T 1ouv_A          131 KKAVEYFTKACDLND--GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR  208 (273)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCc--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            888888888877763  3322222222223    5677777777766432 222222222222333    5667777776


Q ss_pred             hcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 021611          246 FSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRSDDYMAALAKV  300 (310)
Q Consensus       246 ~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~  300 (310)
                      +......+...+++.+|.+|..    .|++++|+.+|++|+++.    ..+....|..+
T Consensus       209 ~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~  263 (273)
T 1ouv_A          209 YSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG----AKGACDILKQL  263 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT----CHHHHHHHHTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Confidence            6533322335566777887777    778888888888887732    23444455443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.53  E-value=2.7e-15  Score=137.15  Aligned_cols=165  Identities=9%  Similarity=0.002  Sum_probs=121.8

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      .-|+++..++.+|..+...|++++|++.|+++++++|+++.+++.+|.++...|++++|++.|+++++.+|+........
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            44888999999999999999999999999999999999999999999999999999999999999999999543322222


Q ss_pred             eehhhhhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc--hhHhhhhhhhhhhhccch
Q 021611          199 FLCEAQLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE--YFYASLYAGLFYESQKKA  271 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d--~~~a~~~lG~~~~~~G~~  271 (310)
                      .+...+.++.++|+..+.+   ..|+...........+...|++++|+..+...  .+|+  ...++..+|.++..+|+.
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            2223355666777766655   33443333333333445567777777666421  1222  255677788888888888


Q ss_pred             hhHHHHHHHhhc
Q 021611          272 DAAKLHILAACE  283 (310)
Q Consensus       272 d~A~~~~~kAl~  283 (310)
                      ++|...|++++.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            888888888775

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.52  E-value=9.3e-15  Score=134.23  Aligned_cols=173  Identities=8%  Similarity=0.008  Sum_probs=104.6

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      .++...+++++....+|+++.+++.+|.++...|++++|++.|++     |+++.++..+|.++..+|++++|++.|+++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            445555555544224677777777778888778888888877777     777777777777777778888888888887


Q ss_pred             hccCCCCCccceeeeehhh----hhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611          185 VAQNPNDTEESIWCFLCEA----QLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYF  255 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a----~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~  255 (310)
                      ++++|++...  ....+..    ..|++++|+..+.++   .|+....+......+...|++++|++.+..  ..+|+..
T Consensus       157 ~~~~p~~~~~--~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~  234 (291)
T 3mkr_A          157 QDQDEDATLT--QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP  234 (291)
T ss_dssp             HHHCTTCHHH--HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhhCcCcHHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            7777765421  1111111    235677777766553   222222222222234445666666666542  2234455


Q ss_pred             Hhhhhhhhhhhhccchhh-HHHHHHHhhcC
Q 021611          256 YASLYAGLFYESQKKADA-AKLHILAACES  284 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~-A~~~~~kAl~~  284 (310)
                      .+++++|.++..+|+.++ +..++++++++
T Consensus       235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            556667766666776654 45666666663

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.52  E-value=2.5e-15  Score=122.45  Aligned_cols=108  Identities=18%  Similarity=0.216  Sum_probs=95.9

Q ss_pred             hhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611          109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN  188 (310)
Q Consensus       109 ~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~  188 (310)
                      ..+.+++.  ++|+++.+++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++
T Consensus         5 ~~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45667777  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          189 PNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       189 P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      |+++..+...+.+...+|++++|+..+.++
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999986555555566899999999988763

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.50  E-value=5.3e-15  Score=141.15  Aligned_cols=180  Identities=14%  Similarity=0.018  Sum_probs=115.4

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh------------
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL------------  171 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l------------  171 (310)
                      ..++...+.+++.  ++|+++.++.++|.++...|++++|++.|++|++++|++..+++++|.++...            
T Consensus       229 ~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~  306 (472)
T 4g1t_A          229 EGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM  306 (472)
T ss_dssp             -CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3456677777777  88888888888899988899999999999999999998888888888876543            


Q ss_pred             -------hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-CCChhhHH-HH---H--HhhcCCC
Q 021611          172 -------DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-RDPRPVMR-EA---Y--NMFKGGG  237 (310)
Q Consensus       172 -------g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-~d~~~~~~-~a---~--~l~~~~~  237 (310)
                             +.+++|+..|+++++++|++...+...+.+....|++++|+..+.++. .++.+... .+   +  ......+
T Consensus       307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~  386 (472)
T 4g1t_A          307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK  386 (472)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence                   457888888888888888887644433333447888999988887742 22222111 11   1  1122356


Q ss_pred             ChHHHHHHhc----CC----------------------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          238 DPEKLVAAFS----SG----------------------RENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       238 ~~e~al~~~~----~~----------------------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      +.++|+..+.    ..                      .+|+...++..+|.+|..+|++++|+.+|++|+++.
T Consensus       387 ~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          387 CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            6666655442    11                      134445677789999999999999999999999843

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=4.4e-15  Score=147.33  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=112.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+.+++.  ++|+++.+|+.+|.++..+|++++|++.|+++++++|++..+++++|.++..+|++++|++.|+
T Consensus         4 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            4 DGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34668888999998  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAG  262 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG  262 (310)
                      ++++++|+++..+...+.+...+|++++|+..+.++..                             ..++...++..+|
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------------------~~p~~~~~~~~l~  132 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ-----------------------------LLPEEPYITAQLL  132 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------hCCCCHHHHHHHH
Confidence            99999999877544444444477888888777665210                             0123344566788


Q ss_pred             hhhhhc---cchhhHHHHHHHhhcCC
Q 021611          263 LFYESQ---KKADAAKLHILAACESP  285 (310)
Q Consensus       263 ~~~~~~---G~~d~A~~~~~kAl~~~  285 (310)
                      .++..+   |++++|+..|+++++..
T Consensus       133 ~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          133 NWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhccccHHHHHHHHHHHHhcC
Confidence            888888   89999999999998843

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.49  E-value=9e-16  Score=128.79  Aligned_cols=125  Identities=12%  Similarity=0.050  Sum_probs=104.0

Q ss_pred             hhhhhhccCCCcccccccccccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccc
Q 021611           62 FHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV  141 (310)
Q Consensus        62 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~  141 (310)
                      -+..++......-....++|....+....    ...+.+.+.+.+|...|.+++.  ++|+++.+|+++|.++..+|+++
T Consensus        14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~l----g~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~   87 (151)
T 3gyz_A           14 AVIDAINSGATLKDINAIPDDMMDDIYSY----AYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQ   87 (151)
T ss_dssp             HHHHHHHTSCCTGGGCCSCHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCCHHHHhCCCHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHH
Confidence            35566667777777777777633322211    1223344467789999999998  99999999999999999999999


Q ss_pred             cchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          142 GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       142 eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      +|++.|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|+.+
T Consensus        88 ~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999999999999754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.49  E-value=3.3e-15  Score=129.73  Aligned_cols=118  Identities=10%  Similarity=0.019  Sum_probs=94.4

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh--hhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR--FEE  176 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~--~~e  176 (310)
                      .+.+...+|...|.+++.  ++|+++.+|+.+|.++..+|++++|++.|+++++++|+++.+++++|.+++..|+  .++
T Consensus        65 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  142 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK  142 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence            344567788889999998  9999999999999999999999999999999999999999999999999988865  566


Q ss_pred             hhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc
Q 021611          177 GAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG  219 (310)
Q Consensus       177 A~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~  219 (310)
                      +...|++++..+|.+ .+.+..+++...+|++++|+..+.++.
T Consensus       143 ~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al  184 (208)
T 3urz_A          143 LETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVI  184 (208)
T ss_dssp             HHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            788898887655432 122333444557889999999998754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.49  E-value=1.5e-14  Score=132.85  Aligned_cols=183  Identities=13%  Similarity=0.085  Sum_probs=146.7

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhcccc--CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI  196 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~  196 (310)
                      .+|.+..++..++..+...|++++|++.++++++.  +|+++.+++.+|.++...|++++|++.|++     |++++++.
T Consensus        60 ~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~  134 (291)
T 3mkr_A           60 SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMA  134 (291)
T ss_dssp             TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHH
T ss_pred             cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHH
Confidence            35668899999999999999999999999998875  699999999999999999999999999998     77777544


Q ss_pred             eeeehhhhhcChHHHHHhHHHh---cCCChh-hHHHHH-HhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhcc
Q 021611          197 WCFLCEAQLYGVDEARNRFLEV---GRDPRP-VMREAY-NMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQK  269 (310)
Q Consensus       197 ~~~l~~a~l~~~~eA~~~l~~~---~~d~~~-~~~~a~-~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G  269 (310)
                      .......++|++++|...+.++   .++... .+..++ .++.+.+++++|+..+...  ..|+...+++.+|.++..+|
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g  214 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG  214 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            4444445889999999988774   333321 112222 3445568899988887532  24566777888999999999


Q ss_pred             chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          270 KADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       270 ~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      ++++|+..|++++++.  +.+++.+.+++.++...|++.
T Consensus       215 ~~~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          215 RWEAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCH
T ss_pred             CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCH
Confidence            9999999999999954  457799999999999999874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.48  E-value=2.7e-14  Score=125.03  Aligned_cols=70  Identities=7%  Similarity=0.014  Sum_probs=43.7

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +.+++.+|..++..|++++|+..|+++++..|+++   .+++.+|.+++.+|+|++|++.|+++++++|+++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            45566666666666666666666666666666542   45666666666666666666666666666666543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.48  E-value=4.9e-15  Score=138.79  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=123.9

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---------------hhHHHhhccc
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---------------KAYLWQRGLS  167 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---------------~~a~~~~G~a  167 (310)
                      .+..+...|..++.  .+|+++.+|+.+|.+++.+|++++|+..|++|++++|++               ..+++++|.+
T Consensus       128 ~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          128 SFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34557778888887  899999999999999999999999999999999999998               5999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611          168 LYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFS  247 (310)
Q Consensus       168 ~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~  247 (310)
                      +..+|+|++|+..|+++++++|+++.+++.++.+...+|++++|+..+.++..                           
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---------------------------  258 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---------------------------  258 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------
Confidence            99999999999999999999999987655555555578888888888775211                           


Q ss_pred             CCCCcchhHhhhhhhhhhhhccchhhH-HHHHHHhhc
Q 021611          248 SGRENEYFYASLYAGLFYESQKKADAA-KLHILAACE  283 (310)
Q Consensus       248 ~~~~~d~~~a~~~lG~~~~~~G~~d~A-~~~~~kAl~  283 (310)
                        ..|+...++..+|.++..+|++++| ...|++.+.
T Consensus       259 --l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          259 --LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             --HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1233345667789999999999998 556666654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=7.6e-15  Score=140.04  Aligned_cols=200  Identities=11%  Similarity=0.014  Sum_probs=141.6

Q ss_pred             cccchhhhhhhhcC-------CCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcc--------hhhHHHhhccc
Q 021611          103 FIPSVSGIWDALTG-------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--------QKAYLWQRGLS  167 (310)
Q Consensus       103 ~~~~a~~~~~~ai~-------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--------~~~a~~~~G~a  167 (310)
                      ...+|...|.+++.       ...+|+...+|.++|.+|..+|++++|+..|++++++.|.        .+..+.++|.+
T Consensus        66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~  145 (472)
T 4g1t_A           66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT  145 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence            45667777777654       1246788899999999999999999999999999998653        45678888888


Q ss_pred             hhhh--hhhhhhhhhhhhhhccCCCCCccceeeeehhh---hhcChHHHHHhHHH---hcCCChhhHHHHH----HhhcC
Q 021611          168 LYYL--DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA---QLYGVDEARNRFLE---VGRDPRPVMREAY----NMFKG  235 (310)
Q Consensus       168 ~~~l--g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a---~l~~~~eA~~~l~~---~~~d~~~~~~~a~----~l~~~  235 (310)
                      +...  ++|++|+++|+++++++|++++.....+.+..   ..++.++|+..+.+   +.++.........    .+...
T Consensus       146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~  225 (472)
T 4g1t_A          146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE  225 (472)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--
T ss_pred             HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhh
Confidence            7765  57999999999999999999874333332222   34566777777655   3444333222111    22334


Q ss_pred             CCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611          236 GGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLC  304 (310)
Q Consensus       236 ~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~  304 (310)
                      .++.+++.+.+..  ...++...++..+|.++..+|++++|+..|++|++..  +.+...+.++|.++...
T Consensus       226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHH
Confidence            4567777776652  2345566778889999999999999999999999943  35668888888876543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=3.4e-14  Score=130.22  Aligned_cols=178  Identities=6%  Similarity=-0.101  Sum_probs=142.7

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh-HHHhhccchhhhhhhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA-YLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~-a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ..+|...|++++. .++|+++.+|+.+|.++...|++++|++.|+++++++|+++. +|.++|.++.+.|++++|++.|+
T Consensus        80 ~~~A~~~~~rAl~-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           80 SDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3678899999986 149999999999999999999999999999999999999987 99999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhh---hcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC-----CC
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQ---LYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-----RE  251 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~---l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-----~~  251 (310)
                      ++++.+|.+..  +|...+...   .|++++|+..+.++   .|+....+.....++...|++++|...+...     .+
T Consensus       159 ~a~~~~p~~~~--~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~  236 (308)
T 2ond_A          159 KAREDARTRHH--VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHhcCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence            99999998765  444444332   68999999988764   3443344433344566678999988777522     23


Q ss_pred             cc-hhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          252 NE-YFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       252 ~d-~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      |+ ....+...+.+....|+.++|...++++++.
T Consensus       237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            32 3445556778888899999999999999984

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.46  E-value=2.6e-14  Score=118.55  Aligned_cols=99  Identities=13%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      .+|.++..|+.+|.+++..|++++|++.|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.++...
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999886643333


Q ss_pred             eehhhhhcChHHHHHhHHH
Q 021611          199 FLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~  217 (310)
                      +.+...+|++++|+..+.+
T Consensus        86 g~~~~~~g~~~~A~~~~~~  104 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEK  104 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHH
Confidence            3333456666666665553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.46  E-value=3.1e-14  Score=133.15  Aligned_cols=201  Identities=8%  Similarity=-0.077  Sum_probs=129.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc--ccccchhhhhhccccCcchhhHHHhhccch----hhh---hh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKAYLWQRGLSL----YYL---DR  173 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g--~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~----~~l---g~  173 (310)
                      +.++|..+++++|.  +||+++.+|+.||.++..+|  +++++++.++++|+++|++..+|+.||.++    ..+   ++
T Consensus        48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence            66788899999998  99999999999999999999  999999999999999999999999999998    666   78


Q ss_pred             hhhhhhhhhhhhccCCCCCccceeeeehhhhhcChH--HHHHhHHHh-cCCChh--hHHHHHHhhcCCCC------hHHH
Q 021611          174 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVD--EARNRFLEV-GRDPRP--VMREAYNMFKGGGD------PEKL  242 (310)
Q Consensus       174 ~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~--eA~~~l~~~-~~d~~~--~~~~a~~l~~~~~~------~e~a  242 (310)
                      ++++++.++++++++|++.+++.++..+..++++++  ++++.+.++ ..+++.  .+.-...++...+.      ++++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            999999999999999988775444444445677776  777766552 223332  22111112222222      4444


Q ss_pred             HHHhc--CCCCcchhHhhhhhhhhhhhccchhhHH-HHHHHhhcCC-CCCCChHHHHHHHHHhhccc
Q 021611          243 VAAFS--SGRENEYFYASLYAGLFYESQKKADAAK-LHILAACESP-YGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       243 l~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~-~~~~kAl~~~-~~~~s~~~~~~la~~~~~~~  305 (310)
                      +..+.  ...+|....++++++.++...|+..++. ....+++++. ....+...+..|+.++...|
T Consensus       206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            44332  1123444445555555555555543333 3344444321 11234445555555555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.2e-14  Score=114.97  Aligned_cols=98  Identities=18%  Similarity=0.150  Sum_probs=87.3

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      |.++..|+.+|..++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+++|+++++++|+++.++...+.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999998876555555


Q ss_pred             hhhhhcChHHHHHhHHHh
Q 021611          201 CEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~  218 (310)
                      +...+|++++|+..+.++
T Consensus        81 ~~~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           81 AQIAVKEYASALETLDAA   98 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHH
Confidence            555889999999888763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.45  E-value=6e-14  Score=109.77  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=103.2

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      ..|.++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|+++++++|+++.     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----   85 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK-----   85 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH-----
Confidence            567899999999999999999999999999999999999999999999999999999999999999999986532     


Q ss_pred             eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611          199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI  278 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~  278 (310)
                                                                                +++.+|.++..+|++++|+.+|
T Consensus        86 ----------------------------------------------------------~~~~la~~~~~~~~~~~A~~~~  107 (133)
T 2lni_A           86 ----------------------------------------------------------GYTRKAAALEAMKDYTKAMDVY  107 (133)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhhHHHHHHHH
Confidence                                                                      1224666777788888888888


Q ss_pred             HHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          279 LAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       279 ~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      +++++..  +.+.+.+..++.++..+|+
T Consensus       108 ~~~~~~~--p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          108 QKALDLD--SSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHC--GGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhC--CCchHHHHHHHHHHHHhcC
Confidence            8888743  2345677777877777664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=3.7e-15  Score=126.83  Aligned_cols=91  Identities=14%  Similarity=0.050  Sum_probs=84.3

Q ss_pred             hhcccchhhhhhhhcCCCCchh------------HHHHHHHhhhhheeccccccchhhhhhcccc-------CcchhhHH
Q 021611          101 RLFIPSVSGIWDALTGGNNNSR------------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPRQKAYL  161 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~------------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l-------~P~~~~a~  161 (310)
                      .+.+.+|...|++++.  ++|+            ++.+|.++|.++..+|+|++|+++|++||++       +|++..+|
T Consensus        24 ~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~  101 (159)
T 2hr2_A           24 AGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW  101 (159)
T ss_dssp             HTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred             CCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHH
Confidence            3457789999999998  8887            3459999999999999999999999999999       99999999


Q ss_pred             ----HhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          162 ----WQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       162 ----~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                          +++|.++..+|++++|+++|+++++++|+|..
T Consensus       102 ~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A          102 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence                99999999999999999999999999999875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=6.8e-15  Score=127.73  Aligned_cols=120  Identities=9%  Similarity=0.020  Sum_probs=104.6

Q ss_pred             hcccchhhhhhhhcCCCCch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      +.+.+|...|++++.  ++| .++.+++.+|.++..+|++++|+..|+++++++|++..+++.+|.++..+|++++|++.
T Consensus        21 ~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   98 (228)
T 4i17_A           21 KNYAVAFEKYSEYLK--LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT   98 (228)
T ss_dssp             TCHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH
Confidence            357789999999998  888 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCcc-----ceeeeeh--hhhhcChHHHHHhHHHhcC-CCh
Q 021611          181 FRIDVAQNPNDTEE-----SIWCFLC--EAQLYGVDEARNRFLEVGR-DPR  223 (310)
Q Consensus       181 f~~Al~l~P~d~~~-----~~~~~l~--~a~l~~~~eA~~~l~~~~~-d~~  223 (310)
                      |+++++++|+++..     ..|..++  ....|++++|+..+.++.. +|.
T Consensus        99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            99999999998732     2233443  3478999999999988544 444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.45  E-value=1.2e-14  Score=127.15  Aligned_cols=99  Identities=9%  Similarity=0.039  Sum_probs=73.6

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC--
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN--  188 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~--  188 (310)
                      .+|..+.++..+|.++...|++++|+..|++++++        +|....++.++|.++...|++++|++.|++++++.  
T Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34788888888888888888888888888888877        47778888888888888888888888888888872  


Q ss_pred             ---CCCCc-cceeeeehh--hhhcChHHHHHhHHH
Q 021611          189 ---PNDTE-ESIWCFLCE--AQLYGVDEARNRFLE  217 (310)
Q Consensus       189 ---P~d~~-~~~~~~l~~--a~l~~~~eA~~~l~~  217 (310)
                         |+++. ...+..++.  ...|++++|...+.+
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  152 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR  152 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence               22221 223333333  367888888887665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.44  E-value=1.4e-14  Score=148.16  Aligned_cols=183  Identities=8%  Similarity=-0.062  Sum_probs=143.7

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhcc--------ccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI--------ELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP  189 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl--------~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P  189 (310)
                      .++|+++.+++.+|   ...|++++|++.|++++        +++|++..+++.+|.++..+|++++|++.|+++++++|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            37899999999888   77899999999999999        99999999999999999999999999999999999999


Q ss_pred             CCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhh
Q 021611          190 NDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLF  264 (310)
Q Consensus       190 ~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~  264 (310)
                      +++.++...+.+...+|++++|+..+.++   .++....+......+...|++++ ++.+..  ..+|+...+++++|.+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            99886555555556899999999998774   44433333222223333556666 655542  2345667788999999


Q ss_pred             hhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          265 YESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       265 ~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      +..+|++++|+.+|++|+++.  +.+.+.+.+++.+++..|.
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence            999999999999999999954  3456888899999877654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.43  E-value=1.2e-14  Score=129.50  Aligned_cols=166  Identities=12%  Similarity=0.010  Sum_probs=126.4

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC-
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN-  188 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~-  188 (310)
                      .-+|+.+.++..+|.++...|++++|+..|++++++        +|....++..+|.++...|++++|++.|++++++. 
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999995        78889999999999999999999999999999873 


Q ss_pred             ----CCCCc-cceeeeehhh--hhcChHHHHHhHHHhc--------CCChh---hHHHHHHhhcCCCChHHHHHHhcC--
Q 021611          189 ----PNDTE-ESIWCFLCEA--QLYGVDEARNRFLEVG--------RDPRP---VMREAYNMFKGGGDPEKLVAAFSS--  248 (310)
Q Consensus       189 ----P~d~~-~~~~~~l~~a--~l~~~~eA~~~l~~~~--------~d~~~---~~~~a~~l~~~~~~~e~al~~~~~--  248 (310)
                          ++++. ...+..++..  ..|++++|+..+.++.        .++..   .+......+...|++++|+..+..  
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                22221 2234444433  6889999999877632        11111   111223345567888887766531  


Q ss_pred             --------CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          249 --------GRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       249 --------~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                              ...+....++..+|.++..+|++++|+.+|+++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                    11344556777899999999999999999999997

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.43  E-value=3e-14  Score=131.84  Aligned_cols=190  Identities=9%  Similarity=-0.003  Sum_probs=152.4

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHh-------hhhheeccccccchhhhhhccccCcchhhHHHh-hc---------
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRR-------GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ-RG---------  165 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~r-------G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~-~G---------  165 (310)
                      ....|...|.+++.  ++|+.+++|.+|       +.++...+++.+++..+.+++++.|+...++++ .|         
T Consensus        21 d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           21 SEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             CHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            45678899999998  999999999999       999999999999999999999999999988888 44         


Q ss_pred             -----------cchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhH-----HHH
Q 021611          166 -----------LSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVM-----REA  229 (310)
Q Consensus       166 -----------~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~-----~~a  229 (310)
                                 .++...|+|++|.+.|+..+..+|++. ..+...+...+.+++++|+..+.+....+.+..     ..+
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L  177 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH  177 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence                       668899999999999999999999876 444444444588999999999987665543321     122


Q ss_pred             HHhhcCCCChHHHHHHhcCC---CC-cc-hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHH
Q 021611          230 YNMFKGGGDPEKLVAAFSSG---RE-NE-YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALA  298 (310)
Q Consensus       230 ~~l~~~~~~~e~al~~~~~~---~~-~d-~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la  298 (310)
                      ...+...|+.++|+..+...   .. |. ...+++++|.++..+|+.++|+..|++++....  . ..+...|.
T Consensus       178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~-~~~~~aL~  248 (282)
T 4f3v_A          178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--E-PKVAAALK  248 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--C-HHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--c-HHHHHHHh
Confidence            33456678999998888632   21 33 556889999999999999999999999999432  2 45555553

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=4e-14  Score=125.77  Aligned_cols=174  Identities=9%  Similarity=0.009  Sum_probs=128.9

Q ss_pred             hhcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcc---hhhHHHhhccchhh----
Q 021611          101 RLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---QKAYLWQRGLSLYY----  170 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---~~~a~~~~G~a~~~----  170 (310)
                      .+.+.+|...|.+++.  .+|++   +.+++.+|.+++.+|++++|+..|+++++++|+   .+.+++.+|.+++.    
T Consensus        28 ~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~  105 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFT--YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP  105 (261)
T ss_dssp             TTCHHHHHHHHHHHGG--GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred             hCCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence            3467789999999998  88888   999999999999999999999999999999885   46789999999999    


Q ss_pred             ----hhhhhhhhhhhhhhhccCCCCCccc-----------------eeeeehhhhhcChHHHHHhHHHhc---CCCh---
Q 021611          171 ----LDRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEAQLYGVDEARNRFLEVG---RDPR---  223 (310)
Q Consensus       171 ----lg~~~eA~~~f~~Al~l~P~d~~~~-----------------~~~~l~~a~l~~~~eA~~~l~~~~---~d~~---  223 (310)
                          +|++++|+..|+++++.+|+++...                 ...+.+....|++++|+..+.++.   |+..   
T Consensus       106 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  185 (261)
T 3qky_A          106 YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWAD  185 (261)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred             ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHH
Confidence                9999999999999999999987643                 223334447899999999987742   3321   


Q ss_pred             hhHH-HHHHhhc---------CCCChHHHHHHhcC-----CCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          224 PVMR-EAYNMFK---------GGGDPEKLVAAFSS-----GRENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       224 ~~~~-~a~~l~~---------~~~~~e~al~~~~~-----~~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                      ..+. .+..++.         ..+++++|+..+..     +..+....+...++.++..+|+++++..
T Consensus       186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~  253 (261)
T 3qky_A          186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS  253 (261)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            1111 1111221         11567777776642     1222234555567778888887776554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.43  E-value=1.2e-13  Score=107.04  Aligned_cols=124  Identities=21%  Similarity=0.207  Sum_probs=104.8

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|++.|+++++++|+++.     
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----   81 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK-----   81 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH-----
Confidence            688999999999999999999999999999999999999999999999999999999999999999999886532     


Q ss_pred             eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611          199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI  278 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~  278 (310)
                                                                                +++.+|.++..+|++++|+.+|
T Consensus        82 ----------------------------------------------------------~~~~~~~~~~~~~~~~~A~~~~  103 (131)
T 2vyi_A           82 ----------------------------------------------------------AYGRMGLALSSLNKHVEAVAYY  103 (131)
T ss_dssp             ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------------------------------------------HHHHHHHHHHHhCCHHHHHHHH
Confidence                                                                      1224666777778888888888


Q ss_pred             HHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          279 LAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       279 ~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      +++++..  +.+...+..++.++...|++
T Consensus       104 ~~~~~~~--p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          104 KKALELD--PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence            8888743  34557777788888777765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.42  E-value=1.4e-14  Score=135.64  Aligned_cols=172  Identities=9%  Similarity=-0.042  Sum_probs=124.5

Q ss_pred             hcCCCCchhHHHHHHHhhhhhe------------eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          114 LTGGNNNSREAVVAIRRGMLLF------------RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       114 ai~~~~~P~~~~a~~~rG~~~~------------~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      ++.  ++|+.  +|..+|....            .++++++|++.|+++++++|++..+++++|.+++..|+|++|+..|
T Consensus        95 ~l~--i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y  170 (336)
T 1p5q_A           95 IVY--LKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY  170 (336)
T ss_dssp             EEE--ECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             EEE--ECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            444  78876  7888887653            7899999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhh
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASL  259 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~  259 (310)
                      +++++++|++....            .+++.. ..   +.....+......+...+++++|+..+..  ...|+...+++
T Consensus       171 ~~Al~~~p~~~~~~------------~~~~~~-~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  234 (336)
T 1p5q_A          171 KKIVSWLEYESSFS------------NEEAQK-AQ---ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS  234 (336)
T ss_dssp             HHHHHHTTTCCCCC------------SHHHHH-HH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHhhccccCC------------hHHHHH-HH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            99999999885310            000000 00   00000011111122334555665555542  12355667888


Q ss_pred             hhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          260 YAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       260 ~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      .+|.++..+|++++|+.+|++|+++.  +.+...+.+++.++..+|++
T Consensus       235 ~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          235 RRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999954  34568888999998887764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=3.5e-13  Score=114.96  Aligned_cols=149  Identities=13%  Similarity=0.045  Sum_probs=101.8

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      ......++.+|.++...|++++|+..|++++  +| ++.+++++|.++..+|++++|++.|+++++++|+++.++...+.
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            3455677788888888888888888888886  33 45678888888888888888888888888888877664433333


Q ss_pred             hhhhhcChHHHHHhHHHhcC-CChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611          201 CEAQLYGVDEARNRFLEVGR-DPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHIL  279 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~  279 (310)
                      +...+|++++|+..+.++.. .+.... ..  +.           .......+....+++.+|.++..+|++++|+.+|+
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~-~~--~~-----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  145 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQL-ID--YK-----------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  145 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSE-EE--CG-----------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccH-HH--HH-----------HhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            44467778888777765321 111000 00  00           00012334556778899999999999999999999


Q ss_pred             HhhcCCC
Q 021611          280 AACESPY  286 (310)
Q Consensus       280 kAl~~~~  286 (310)
                      +++++..
T Consensus       146 ~al~~~p  152 (213)
T 1hh8_A          146 LATSMKS  152 (213)
T ss_dssp             HHHTTCC
T ss_pred             HHHHcCc
Confidence            9999654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.41  E-value=1.7e-14  Score=122.51  Aligned_cols=95  Identities=20%  Similarity=0.373  Sum_probs=87.6

Q ss_pred             cccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccc----------cchhhhhhccccCcchhhHHHhhcc
Q 021611           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV----------GSVAEFDKAIELDPRQKAYLWQRGL  166 (310)
Q Consensus        97 ~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~----------eAl~~f~kAl~l~P~~~~a~~~~G~  166 (310)
                      ...|-+.+.+|...+.+++.  ++|+++++|+++|.++..+|+++          +|+..|++||+++|++..+|+++|.
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            44555688889999999998  99999999999999999999875          9999999999999999999999999


Q ss_pred             chhhhh-----------hhhhhhhhhhhhhccCCCCCc
Q 021611          167 SLYYLD-----------RFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       167 a~~~lg-----------~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +|..+|           ++++|+++|++|++++|++..
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            999985           899999999999999998753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.41  E-value=3.6e-14  Score=129.37  Aligned_cols=177  Identities=10%  Similarity=0.045  Sum_probs=117.9

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.+.+|...|.+++.  .+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+..
T Consensus        17 ~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   94 (281)
T 2c2l_A           17 GRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN   94 (281)
T ss_dssp             TTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3356778889999998  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceeeeehhhhhcChHHHHH--hHHH-hcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchh
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN--RFLE-VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYF  255 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~--~l~~-~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~  255 (310)
                      |+++++++|+++....  ......+ +..++..  .... ..+..... ...+..+. .++.+++++.+...  ..|+..
T Consensus        95 ~~~al~l~p~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~l~~l~-~~~~~~A~~~~~~al~~~p~~~  169 (281)
T 2c2l_A           95 LQRAYSLAKEQRLNFG--DDIPSAL-RIAKKKRWNSIEERRIHQESEL-HSYLTRLI-AAERERELEECQRNHEGHEDDG  169 (281)
T ss_dssp             HHHHHHHHHHTTCCCC--SHHHHHH-HHHHHHHHHHHHHTCCCCCCHH-HHHHHHHH-HHHHHHHHTTTSGGGTTTSCHH
T ss_pred             HHHHHHhCccchhhHH--HHHHHHH-HHHHHHHHHHHHHHHHhhhHHH-HHHHHHHH-HHHHHHHHHHHHhhhccccchh
Confidence            9999999998754211  1111111 1111111  1111 11111111 11111121 35667777766532  234433


Q ss_pred             Hhhhhhhhhhhhc-cchhhHHHHHHHhhcC
Q 021611          256 YASLYAGLFYESQ-KKADAAKLHILAACES  284 (310)
Q Consensus       256 ~a~~~lG~~~~~~-G~~d~A~~~~~kAl~~  284 (310)
                      .....++.++... +++++|...|+++.+.
T Consensus       170 ~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          170 HIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3333444444444 7889999999998873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=8.5e-14  Score=140.12  Aligned_cols=171  Identities=11%  Similarity=-0.026  Sum_probs=133.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc----------cccchhhhhhccccCcchhhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~----------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg  172 (310)
                      +.++|...+++++.  +||+++.+|+.||.++..+|+          ++++++.++++++.+|++..+|+.||.++..+|
T Consensus        44 ~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            66788999999998  999999999999999999999          999999999999999999999999999999999


Q ss_pred             --hhhhhhhhhhhhhccCCCCCccceeeeehhhhhc-ChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC
Q 021611          173 --RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG  249 (310)
Q Consensus       173 --~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~-~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~  249 (310)
                        ++++|++.++++++++|++.+++.+++.+...++ .++++++.+.+..                             .
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-----------------------------~  172 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-----------------------------T  172 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-----------------------------T
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-----------------------------H
Confidence              6799999999999999999875444433344556 5556555544421                             1


Q ss_pred             CCcchhHhhhhhhhhhhhc--------------cchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          250 RENEYFYASLYAGLFYESQ--------------KKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~~~~~--------------G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      .++....+|.++|.++..+              +.+++|++++.+|+++..  .+...|..++.++...+.
T Consensus       173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P--~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--SCSHHHHHHHHHHSCCCC
T ss_pred             HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCC
Confidence            2333444555555555442              678999999999998543  455777788777776654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.40  E-value=6.7e-15  Score=137.67  Aligned_cols=202  Identities=12%  Similarity=0.011  Sum_probs=133.5

Q ss_pred             hcccchhhhhhhhcCCCCchhHH----HHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREA----VVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYL  171 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~----~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~l  171 (310)
                      +.+.+|...|.+++.  ++|+++    .+|+.+|.++..+|++++|+..|++++++      +|....+++.+|.++..+
T Consensus        62 g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (411)
T 4a1s_A           62 GDCRAGVAFFQAAIQ--AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM  139 (411)
T ss_dssp             TCHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHH--hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            356678888888887  677665    58888899999999999999999998888      677788888899999999


Q ss_pred             hhhhhhhhhhhhhhcc------CCCCCccceeeeeh--hhhhcC-----------------hHHHHHhHHHhcC-----C
Q 021611          172 DRFEEGAEQFRIDVAQ------NPNDTEESIWCFLC--EAQLYG-----------------VDEARNRFLEVGR-----D  221 (310)
Q Consensus       172 g~~~eA~~~f~~Al~l------~P~d~~~~~~~~l~--~a~l~~-----------------~~eA~~~l~~~~~-----d  221 (310)
                      |++++|++.|++++++      .|....  .+..++  ....|+                 +++|+..+.++..     .
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~  217 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGR--ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG  217 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHH--HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999988887      332222  333333  335677                 7777776655311     1


Q ss_pred             Chh----hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611          222 PRP----VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR  289 (310)
Q Consensus       222 ~~~----~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~  289 (310)
                      ..+    .+......+...|++++|+..+...        .......++..+|.++..+|++++|+.+|+++++......
T Consensus       218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  297 (411)
T 4a1s_A          218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG  297 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            111    1111222344467777776655421        1111233566688888888888888888888887321111


Q ss_pred             ----ChHHHHHHHHHhhcccCC
Q 021611          290 ----SDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       290 ----s~~~~~~la~~~~~~~~~  307 (310)
                          ....+..+|.++..+|+|
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~  319 (411)
T 4a1s_A          298 EREVEAQSCYSLGNTYTLLHEF  319 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCH
Confidence                134556778888877775

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.39  E-value=3.4e-14  Score=113.62  Aligned_cols=88  Identities=11%  Similarity=0.050  Sum_probs=56.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...+|...+.+++.  ++|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+
T Consensus        32 ~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~  109 (121)
T 1hxi_A           32 NLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR  109 (121)
T ss_dssp             CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45556666666666  6677777777777777777777777777777777777766677777777777777777777777


Q ss_pred             hhhccCCCCC
Q 021611          183 IDVAQNPNDT  192 (310)
Q Consensus       183 ~Al~l~P~d~  192 (310)
                      ++++++|+++
T Consensus       110 ~al~~~P~~~  119 (121)
T 1hxi_A          110 AWLLSQPQYE  119 (121)
T ss_dssp             HHHC------
T ss_pred             HHHHhCcCCC
Confidence            7777766553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=2.7e-13  Score=133.12  Aligned_cols=199  Identities=12%  Similarity=0.062  Sum_probs=152.6

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhhee-------ccccc-------cchhhhhhccc-cCcchhhHHHhhccchhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDVV-------GSVAEFDKAIE-LDPRQKAYLWQRGLSLYY  170 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~-------~g~~~-------eAl~~f~kAl~-l~P~~~~a~~~~G~a~~~  170 (310)
                      .+...|.+++.  .+|+++.+|+.+|..+..       .|+++       +|++.|++|++ ++|++...|..+|.++..
T Consensus       256 ~a~~~y~~al~--~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          256 RVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            34568889998  899999999999999986       79998       99999999998 899999999999999999


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCCh---h-hHHHHHHhhcCCCChHHHHH
Q 021611          171 LDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPR---P-VMREAYNMFKGGGDPEKLVA  244 (310)
Q Consensus       171 lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~---~-~~~~a~~l~~~~~~~e~al~  244 (310)
                      .|++++|.+.|+++++++|+++. .+|..++..  +.|++++|+..+.++...+.   . ....+...+...|+.+++..
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence            99999999999999999998752 256555543  67889999999988654322   1 12222222334678888887


Q ss_pred             HhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC--CCChHHHHHHHHHhhcccCC
Q 021611          245 AFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG--QRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       245 ~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~--~~s~~~~~~la~~~~~~~~~  307 (310)
                      .+...  ..|+....+...+.++..+|+.++|+..|++|+.....  ......+......+..+|+.
T Consensus       413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~  479 (530)
T 2ooe_A          413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  479 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            77632  23445566677888899999999999999999984211  12233665667777777764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.38  E-value=3.8e-14  Score=120.60  Aligned_cols=96  Identities=18%  Similarity=0.087  Sum_probs=85.4

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcc-------hh-----hHHHhhccchhhhhhhhhhhhhhhhhhcc---
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-------QK-----AYLWQRGLSLYYLDRFEEGAEQFRIDVAQ---  187 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-------~~-----~a~~~~G~a~~~lg~~~eA~~~f~~Al~l---  187 (310)
                      .+..+.++|..++.+|+|++|++.|++||+++|+       +.     .+|.++|.++..+|+|++|+.+|++++++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4678999999999999999999999999999999       33     39999999999999999999999999999   


Q ss_pred             ----CCCCCccc----eeeeehhhhhcChHHHHHhHHHh
Q 021611          188 ----NPNDTEES----IWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       188 ----~P~d~~~~----~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                          +|+++.++    +.++.++..+|+++||+..+.++
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence                99988765    54555555899999999998874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.38  E-value=1.8e-14  Score=117.30  Aligned_cols=92  Identities=11%  Similarity=0.055  Sum_probs=87.0

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+.+.+|...|.+++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++
T Consensus        30 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           30 QAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            33467789999999998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCc
Q 021611          180 QFRIDVAQNPNDTE  193 (310)
Q Consensus       180 ~f~~Al~l~P~d~~  193 (310)
                      .|+++++++|+++.
T Consensus       108 ~~~~al~~~p~~~~  121 (142)
T 2xcb_A          108 GFYSARALAAAQPA  121 (142)
T ss_dssp             HHHHHHHHHHTCGG
T ss_pred             HHHHHHHhCCCCcc
Confidence            99999999998876

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.38  E-value=8.1e-14  Score=136.00  Aligned_cols=144  Identities=12%  Similarity=0.154  Sum_probs=117.6

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---------------hhHHHhhccc
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---------------KAYLWQRGLS  167 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---------------~~a~~~~G~a  167 (310)
                      .+..+...|..++.  .+|+.+.+|..+|.+++.+|+|++|+..|++|++++|++               ..+|+++|.+
T Consensus       249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34467777777777  899999999999999999999999999999999999998               6899999999


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611          168 LYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFS  247 (310)
Q Consensus       168 ~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~  247 (310)
                      +..+|+|++|+.+|+++++++|+++.+++.++.+...+|++++|+..+.++..                           
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---------------------------  379 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---------------------------  379 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------------------
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------------------
Confidence            99999999999999999999999987666555556678889888888776321                           


Q ss_pred             CCCCcchhHhhhhhhhhhhhccchhhHHHH
Q 021611          248 SGRENEYFYASLYAGLFYESQKKADAAKLH  277 (310)
Q Consensus       248 ~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~  277 (310)
                        .+|+...++..+|.++..+|++++|...
T Consensus       380 --l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          380 --VNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             --TC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1223334566788888888888887754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.37  E-value=4e-14  Score=129.06  Aligned_cols=161  Identities=14%  Similarity=0.123  Sum_probs=115.5

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      |+++.+++.+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+++|+++++++|+++.++...+.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999875554544


Q ss_pred             hhhhhcChHHHHHhHHHhc---CCChhhH-HHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          201 CEAQLYGVDEARNRFLEVG---RDPRPVM-REAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~---~d~~~~~-~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                      +...+|++++|+..+.++.   ++....+ ..+...+. .....+....... ..++......++|.++  .|++++|++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~  156 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-IAKKKRWNSIEER-RIHQESELHSYLTRLI--AAERERELE  156 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-HHHHHHHHHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence            5558999999999887632   2111000 01110110 0000111111111 1122233344566655  799999999


Q ss_pred             HHHHhhcCC
Q 021611          277 HILAACESP  285 (310)
Q Consensus       277 ~~~kAl~~~  285 (310)
                      .|++|++..
T Consensus       157 ~~~~al~~~  165 (281)
T 2c2l_A          157 ECQRNHEGH  165 (281)
T ss_dssp             TTSGGGTTT
T ss_pred             HHHhhhccc
Confidence            999999954

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.37  E-value=2.2e-14  Score=132.60  Aligned_cols=86  Identities=12%  Similarity=0.091  Sum_probs=52.5

Q ss_pred             cccchhhhhhhhcCCCCchhH----HHHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~----~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~lg  172 (310)
                      ...+|...+.+++.  ++|++    +.++..+|.++...|++++|+..|++++++      .|....++..+|.++..+|
T Consensus        24 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             CHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            34456666666655  44544    345666666666666666666666666665      3444556666666666666


Q ss_pred             hhhhhhhhhhhhhccCCC
Q 021611          173 RFEEGAEQFRIDVAQNPN  190 (310)
Q Consensus       173 ~~~eA~~~f~~Al~l~P~  190 (310)
                      ++++|+..|++++++.|+
T Consensus       102 ~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A          102 NFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            666666666666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.37  E-value=2.7e-14  Score=118.50  Aligned_cols=94  Identities=11%  Similarity=0.177  Sum_probs=88.3

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.+.+|...|.+++.  ++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|++.
T Consensus        24 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  101 (164)
T 3sz7_A           24 RKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEA  101 (164)
T ss_dssp             TTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            3467789999999998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccce
Q 021611          181 FRIDVAQNPNDTEESI  196 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~  196 (310)
                      |+++++++|+++..++
T Consensus       102 ~~~al~~~p~~~~~~~  117 (164)
T 3sz7_A          102 YEKGIEAEGNGGSDAM  117 (164)
T ss_dssp             HHHHHHHHSSSCCHHH
T ss_pred             HHHHHHhCCCchHHHH
Confidence            9999999999987433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.37  E-value=2.1e-13  Score=112.71  Aligned_cols=118  Identities=11%  Similarity=0.007  Sum_probs=94.3

Q ss_pred             ccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          139 DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       139 ~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      ++-.+-..|+++++++|++..+++++|.+++..|+|++|+..|+++++++|+++..+...+.+...+|++++|+..+.++
T Consensus         2 ~~~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A            2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             ----CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44455678999999999999999999999999999999999999999999999874333333444778888888877752


Q ss_pred             cCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          219 GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       219 ~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      ..                             ..|+...+++++|.++..+|++++|+.+|++++++.
T Consensus        82 l~-----------------------------l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           82 AV-----------------------------MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HH-----------------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             Hh-----------------------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            10                             123445677889999999999999999999999954

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=3.1e-14  Score=126.83  Aligned_cols=182  Identities=11%  Similarity=0.039  Sum_probs=129.0

Q ss_pred             cccchhhhhhhhcCC------CCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccch
Q 021611          103 FIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSL  168 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~  168 (310)
                      ...+|...+.+++..      ..+|..+.++..+|.++...|++++|+..|++++++        +|....++..+|.++
T Consensus        42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  121 (311)
T 3nf1_A           42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY  121 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            456677777777641      136888899999999999999999999999999988        577788999999999


Q ss_pred             hhhhhhhhhhhhhhhhhccC-----CCCCc-cceeeeehh--hhhcChHHHHHhHHHhcC--------CChh---hHHHH
Q 021611          169 YYLDRFEEGAEQFRIDVAQN-----PNDTE-ESIWCFLCE--AQLYGVDEARNRFLEVGR--------DPRP---VMREA  229 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l~-----P~d~~-~~~~~~l~~--a~l~~~~eA~~~l~~~~~--------d~~~---~~~~a  229 (310)
                      ...|++++|++.|++++++.     ++++. ...+..++.  ...|++++|+..+.++..        +...   .+...
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  201 (311)
T 3nf1_A          122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL  201 (311)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999874     33222 223333433  367889999888766321        1111   11122


Q ss_pred             HHhhcCCCChHHHHHHhcCC---------------------------------------------------CCcchhHhh
Q 021611          230 YNMFKGGGDPEKLVAAFSSG---------------------------------------------------RENEYFYAS  258 (310)
Q Consensus       230 ~~l~~~~~~~e~al~~~~~~---------------------------------------------------~~~d~~~a~  258 (310)
                      ...+...|++++|+..+...                                                   ..+....++
T Consensus       202 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  281 (311)
T 3nf1_A          202 ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL  281 (311)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHH
Confidence            22344456777765554311                                                   124455667


Q ss_pred             hhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          259 LYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       259 ~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      ..+|.++..+|++++|+.+|++++++
T Consensus       282 ~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          282 KNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            77899999999999999999999873

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.36  E-value=3.2e-14  Score=126.86  Aligned_cols=203  Identities=12%  Similarity=0.014  Sum_probs=115.8

Q ss_pred             cccchhhhhhhhcCCCCchhH----HHHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~----~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~lg  172 (310)
                      ...+|...|.+++.  .+|++    ..++..+|.++...|++++|++.|++++++      .|....++..+|.++...|
T Consensus        20 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             CHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            45567777777766  55655    467777777777778888888877777777      4555677777777777778


Q ss_pred             hhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcC--------------------hHHHHHhHHHhcC-----C
Q 021611          173 RFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYG--------------------VDEARNRFLEVGR-----D  221 (310)
Q Consensus       173 ~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~--------------------~~eA~~~l~~~~~-----d  221 (310)
                      ++++|++.|++++++.|....    +..+..++.  ...|+                    +++|...+.++..     .
T Consensus        98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~  177 (338)
T 3ro2_A           98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG  177 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888888777777776554322    112222222  24566                    6666665544211     1


Q ss_pred             Chhh----HHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611          222 PRPV----MREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR  289 (310)
Q Consensus       222 ~~~~----~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~  289 (310)
                      ..+.    +......+...|++++++..+...        .......++..+|.++..+|++++|+.++++++++.....
T Consensus       178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (338)
T 3ro2_A          178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  257 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence            1111    111112233345666655544311        1111233555677777777777777777777765311111


Q ss_pred             C----hHHHHHHHHHhhcccCC
Q 021611          290 S----DDYMAALAKVHSLCRNW  307 (310)
Q Consensus       290 s----~~~~~~la~~~~~~~~~  307 (310)
                      +    ...+..+|.++..+|+|
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~  279 (338)
T 3ro2_A          258 DRAVEAQSCYSLGNTYTLLQDY  279 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             chhHHHHHHHHHHHHHHHhcCH
Confidence            1    33445666777666665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.36  E-value=3e-14  Score=133.24  Aligned_cols=206  Identities=12%  Similarity=-0.042  Sum_probs=149.7

Q ss_pred             cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~lg  172 (310)
                      ...+|...+.+++..    ..+|..+.++..+|.++..+|++++|+..|++++++      .|....++.++|.++...|
T Consensus       101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  180 (411)
T 4a1s_A          101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG  180 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence            456677777777651    127889999999999999999999999999999999      6777889999999999999


Q ss_pred             h-----------------hhhhhhhhhhhhccCCCCC----ccceeeeehh--hhhcChHHHHHhHHHhcC------CCh
Q 021611          173 R-----------------FEEGAEQFRIDVAQNPNDT----EESIWCFLCE--AQLYGVDEARNRFLEVGR------DPR  223 (310)
Q Consensus       173 ~-----------------~~eA~~~f~~Al~l~P~d~----~~~~~~~l~~--a~l~~~~eA~~~l~~~~~------d~~  223 (310)
                      +                 +++|++.|++++++.+...    ....+..++.  ...|++++|+..+.++..      ++.
T Consensus       181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (411)
T 4a1s_A          181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA  260 (411)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence            9                 9999999999988743211    1223333433  368999999998876422      111


Q ss_pred             h---hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC----
Q 021611          224 P---VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ----  288 (310)
Q Consensus       224 ~---~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~----  288 (310)
                      .   .+......+...|++++++..+...        .......++..+|.++..+|++++|+.+|++++++....    
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  340 (411)
T 4a1s_A          261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI  340 (411)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence            0   1122233455678888887766421        111235567789999999999999999999999842111    


Q ss_pred             CChHHHHHHHHHhhcccCCc
Q 021611          289 RSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       289 ~s~~~~~~la~~~~~~~~~~  308 (310)
                      .....+..+|.++..+|++.
T Consensus       341 ~~~~~~~~la~~~~~~g~~~  360 (411)
T 4a1s_A          341 GEARACWSLGNAHSAIGGHE  360 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhccHH
Confidence            11346778899999999863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.36  E-value=4.5e-13  Score=125.22  Aligned_cols=193  Identities=9%  Similarity=-0.005  Sum_probs=144.3

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhh----eec---cccccchhhhhhccccCcchhhHHHhhccchhhhhhhh-
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLL----FRQ---GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE-  175 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~----~~~---g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~-  175 (310)
                      ..++...++.++.  ++|+++.+|++|+.++    ...   ++++++++.++++++++|++..+|..||.++..+|+++ 
T Consensus        85 ~~eeL~~~~~~L~--~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~  162 (306)
T 3dra_A           85 LYDELDWCEEIAL--DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND  162 (306)
T ss_dssp             HHHHHHHHHHHHH--HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHH--HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence            5568888999998  9999999999999999    666   89999999999999999999999999999999999999 


Q ss_pred             -hhhhhhhhhhccCCCCCccceeeeehhhhhcC------hHHHHHhHHH---hcCCChhhHHHHHHhhcCCCC-hHHHHH
Q 021611          176 -EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG------VDEARNRFLE---VGRDPRPVMREAYNMFKGGGD-PEKLVA  244 (310)
Q Consensus       176 -eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~------~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~-~e~al~  244 (310)
                       ++++.++++++++|.+..++.++......+++      ++++++.+.+   ..++....+.-...++...++ .+++..
T Consensus       163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~  242 (306)
T 3dra_A          163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE  242 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence             99999999999999998754434333445565      7888887765   344444444322223333333 444444


Q ss_pred             HhcCC-----CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHH
Q 021611          245 AFSSG-----RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAK  299 (310)
Q Consensus       245 ~~~~~-----~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~  299 (310)
                      .+...     .++....+..+++.++..+|+.++|+.+|+++.+ .+.+-..+||.-.+.
T Consensus       243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~-~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS-KYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-ccChHHHHHHHHHHh
Confidence            44321     1244567888899999999999999999999986 222233477654443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.36  E-value=1e-13  Score=109.06  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=83.3

Q ss_pred             cccchhhhhhhhcCCCC---chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~---~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      ...+|...|.+++.  +   +|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++
T Consensus         5 ~~~~A~~~~~~al~--~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            5 LEAQAVPYYEKAIA--SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             --CCCHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHHHHH--cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45678899999998  8   799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCc
Q 021611          180 QFRIDVAQNPNDTE  193 (310)
Q Consensus       180 ~f~~Al~l~P~d~~  193 (310)
                      .|+++++++|+++.
T Consensus        83 ~~~~al~~~p~~~~   96 (117)
T 3k9i_A           83 LLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHCCCHH
T ss_pred             HHHHHHHhCCCcHH
Confidence            99999999998875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.36  E-value=1.5e-13  Score=125.29  Aligned_cols=156  Identities=12%  Similarity=0.045  Sum_probs=108.7

Q ss_pred             hcccchhhhhhhhcCCCCc-----h-hHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchh
Q 021611          102 LFIPSVSGIWDALTGGNNN-----S-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLY  169 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~-----P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~  169 (310)
                      +.+.+|...|.+++.  +.     | ..+.+|.++|.++..+|++++|+..|++|+++.|..      ..++.++|.++.
T Consensus        51 g~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  128 (292)
T 1qqe_A           51 KELNLAGDSFLKAAD--YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (292)
T ss_dssp             TCTHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            356677777777765  32     2 346889999999999999999999999999998754      457888999999


Q ss_pred             hh-hhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHH
Q 021611          170 YL-DRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKL  242 (310)
Q Consensus       170 ~l-g~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~a  242 (310)
                      .. |++++|++.|++|+++.|++..    ...+..++.  .++|++++|+..+.++..                      
T Consensus       129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------------  186 (292)
T 1qqe_A          129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK----------------------  186 (292)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred             HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------------------
Confidence            85 9999999999999998875422    112222222  245666666665554211                      


Q ss_pred             HHHhcCCCC-c----chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611          243 VAAFSSGRE-N----EYFYASLYAGLFYESQKKADAAKLHILAACESPY  286 (310)
Q Consensus       243 l~~~~~~~~-~----d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~  286 (310)
                           ..+. +    ....+++.+|.++..+|++++|+.+|++++++..
T Consensus       187 -----~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  230 (292)
T 1qqe_A          187 -----SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (292)
T ss_dssp             -----TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             -----HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                 1111 1    1122456789999999999999999999998643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.36  E-value=2.9e-13  Score=110.10  Aligned_cols=133  Identities=14%  Similarity=0.031  Sum_probs=105.8

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC  201 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~  201 (310)
                      +.+..|+.+|.+++..|++++|+..|+++++++|++..+++++|.++..+|++++|++.|+++++++|+++..+...+.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999887654434344


Q ss_pred             hhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhh--hhhhhhhhhccchhhHHHHHH
Q 021611          202 EAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYAS--LYAGLFYESQKKADAAKLHIL  279 (310)
Q Consensus       202 ~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~--~~lG~~~~~~G~~d~A~~~~~  279 (310)
                      ...+|++++|+..+.++..                           .  .++...++  +.++..+..+|++++|+..+.
T Consensus        91 ~~~~~~~~~A~~~~~~a~~---------------------------~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  141 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVK---------------------------V--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  141 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---------------------------H--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHH---------------------------h--CCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            4477888888877765211                           0  01111222  334555778899999999999


Q ss_pred             Hhhc
Q 021611          280 AACE  283 (310)
Q Consensus       280 kAl~  283 (310)
                      ++..
T Consensus       142 ~~~~  145 (166)
T 1a17_A          142 HKRS  145 (166)
T ss_dssp             HHHH
T ss_pred             chHH
Confidence            8765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.35  E-value=3.1e-14  Score=112.63  Aligned_cols=86  Identities=14%  Similarity=0.165  Sum_probs=82.6

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.+.+|...|.+++.  ++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|++.
T Consensus        17 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~   94 (126)
T 3upv_A           17 KSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET   94 (126)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3456789999999998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccC
Q 021611          181 FRIDVAQN  188 (310)
Q Consensus       181 f~~Al~l~  188 (310)
                      |+++++++
T Consensus        95 ~~~al~~~  102 (126)
T 3upv_A           95 LDAARTKD  102 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999999

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=4.7e-13  Score=109.67  Aligned_cols=144  Identities=14%  Similarity=0.135  Sum_probs=116.8

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...++...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++.|
T Consensus        22 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   99 (186)
T 3as5_A           22 GRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL   99 (186)
T ss_dssp             TCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            356678888888888  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFS  247 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~  247 (310)
                      +++++.+|+++..+...+.+....|++++|...+.++   .++....+......+...|++++|...+.
T Consensus       100 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A          100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999988764433333444789999999988764   33332333233334455778888877664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.34  E-value=8.4e-14  Score=105.48  Aligned_cols=100  Identities=21%  Similarity=0.260  Sum_probs=87.3

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCC--CCccce
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN--DTEESI  196 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~--d~~~~~  196 (310)
                      ++|+++.+|+.+|.++...|++++|+..|+++++++|++..+++++|.++..+|++++|++.|+++++++|+  +...+.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            478889999999999999999999999999999999999999999999999999999999999999999998  765433


Q ss_pred             eeeehhhhh-cChHHHHHhHHHh
Q 021611          197 WCFLCEAQL-YGVDEARNRFLEV  218 (310)
Q Consensus       197 ~~~l~~a~l-~~~~eA~~~l~~~  218 (310)
                      ..+.+...+ |++++|+..+.++
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Confidence            333334478 8899998888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.34  E-value=2.1e-12  Score=119.48  Aligned_cols=180  Identities=13%  Similarity=0.024  Sum_probs=141.2

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh-------ccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR-------GLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~-------G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      .-++.+|+-+ .-+++++|++.|.++++++|++..+|.++       |.++..+++..+++..+++++++.|+...+.++
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~   86 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA   86 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence            4566777776 58999999999999999999999999999       999999999999999999999999998775554


Q ss_pred             -ee--------------------ehhhhhcChHHHHHhHHHhcC-CChhh--HHHHHHhhcCCCChHHHHHHhcCCCC-c
Q 021611          198 -CF--------------------LCEAQLYGVDEARNRFLEVGR-DPRPV--MREAYNMFKGGGDPEKLVAAFSSGRE-N  252 (310)
Q Consensus       198 -~~--------------------l~~a~l~~~~eA~~~l~~~~~-d~~~~--~~~a~~l~~~~~~~e~al~~~~~~~~-~  252 (310)
                       .+                    ..+...|++++|.+.+..+.. .|...  +..+. ++...++.++++..+..... +
T Consensus        87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~  165 (282)
T 4f3v_A           87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYGAAERWTDVIDQVKSAGKWP  165 (282)
T ss_dssp             CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHHHTTCHHHHHHHHTTGGGCS
T ss_pred             cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHHHcCCHHHHHHHHHHhhccC
Confidence             22                    223367999999999987643 33322  22233 34447889999998874322 2


Q ss_pred             ch---hHhhhhhhhhhhhccchhhHHHHHHHhhcCCC-CCCChHHHHHHHHHhhcccC
Q 021611          253 EY---FYASLYAGLFYESQKKADAAKLHILAACESPY-GQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       253 d~---~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~-~~~s~~~~~~la~~~~~~~~  306 (310)
                      +.   ..+++++|.++..+|++++|+.+|++++..+. +....+.++.+|.++.++|+
T Consensus       166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr  223 (282)
T 4f3v_A          166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN  223 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC
T ss_pred             CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC
Confidence            22   34789999999999999999999999997443 33356788899999988885

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.34  E-value=8.6e-14  Score=115.16  Aligned_cols=90  Identities=8%  Similarity=0.127  Sum_probs=84.5

Q ss_pred             hhcccchhhhhhhhcCCCC------------------chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHH
Q 021611          101 RLFIPSVSGIWDALTGGNN------------------NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW  162 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~------------------~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~  162 (310)
                      .+.+.+|...|.+++.  +                  +|.++.+|+++|.+++.+|++++|+.+|++||+++|+++.+++
T Consensus        24 ~~~~~~A~~~y~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  101 (162)
T 3rkv_A           24 QKDYKEAIDAYRDALT--RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALF  101 (162)
T ss_dssp             TTCHHHHHHHHHHHHH--HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHH
Confidence            3456778899998887  6                  8888999999999999999999999999999999999999999


Q ss_pred             hhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          163 QRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       163 ~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      .+|.++..+|++++|+.+|+++++++|+++
T Consensus       102 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A          102 RRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            999999999999999999999999999886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.33  E-value=2.7e-13  Score=126.97  Aligned_cols=182  Identities=13%  Similarity=0.056  Sum_probs=133.3

Q ss_pred             cccchhhhhhhhcCC-----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhh
Q 021611          103 FIPSVSGIWDALTGG-----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYL  171 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~-----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~l  171 (310)
                      ....|...+.+++..     ...|..+.++.++|.++..+|++++|++.|++|+++.|...      .++.++|.++..+
T Consensus       158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            445566666666541     12667788999999999999999999999999999976543      5899999999999


Q ss_pred             hhhhhhhhhhhhhhcc-----C-CCCCccceeeeehhhhhcChHHHHHhHHHhcC------CChh--hHHHHHHhhcCCC
Q 021611          172 DRFEEGAEQFRIDVAQ-----N-PNDTEESIWCFLCEAQLYGVDEARNRFLEVGR------DPRP--VMREAYNMFKGGG  237 (310)
Q Consensus       172 g~~~eA~~~f~~Al~l-----~-P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~------d~~~--~~~~a~~l~~~~~  237 (310)
                      |++++|++.|++++++     + |..+.++...+.+...+|++++|...+.++..      ++..  .+.....++...+
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~  317 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP  317 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence            9999999999999994     4 54433323233333478999999998876422      2111  1122334455566


Q ss_pred             C---hHHHHHHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          238 D---PEKLVAAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       238 ~---~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      +   .++++..+... ..++...++..+|.+|..+|++++|..+|++++++
T Consensus       318 ~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          318 DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            6   66677666533 33445556778999999999999999999999984

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.33  E-value=8.6e-14  Score=111.24  Aligned_cols=100  Identities=10%  Similarity=0.098  Sum_probs=87.2

Q ss_pred             Cchh-HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          119 NNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       119 ~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      .+|. +...++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus        11 ~~p~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~   90 (121)
T 1hxi_A           11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   90 (121)
T ss_dssp             SCGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3443 234688999999999999999999999999999999999999999999999999999999999999999875444


Q ss_pred             eeehhhhhcChHHHHHhHHHh
Q 021611          198 CFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       198 ~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      .+.+....|++++|+..+.++
T Consensus        91 la~~~~~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           91 LAVSHTNEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            444455789999999988874

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.33  E-value=7.6e-13  Score=101.60  Aligned_cols=123  Identities=22%  Similarity=0.269  Sum_probs=97.1

Q ss_pred             CCchhH-HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611          118 NNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI  196 (310)
Q Consensus       118 ~~~P~~-~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~  196 (310)
                      +.+|.. +.+|+.+|.++...|++++|++.|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---   78 (125)
T 1na0_A            2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---   78 (125)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---
Confidence            356755 7899999999999999999999999999999999999999999999999999999999999998886532   


Q ss_pred             eeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611          197 WCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKL  276 (310)
Q Consensus       197 ~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~  276 (310)
                                                                                  .++.+|.++...|++++|+.
T Consensus        79 ------------------------------------------------------------~~~~la~~~~~~~~~~~A~~   98 (125)
T 1na0_A           79 ------------------------------------------------------------AWYNLGNAYYKQGDYDEAIE   98 (125)
T ss_dssp             ------------------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred             ------------------------------------------------------------HHHHHHHHHHHhcCHHHHHH
Confidence                                                                        11245666667788888888


Q ss_pred             HHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          277 HILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       277 ~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      +|+++++..  +.+.+.+..++.++...|
T Consensus        99 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           99 YYQKALELD--PNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence            888888733  345577777777776544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.33  E-value=4.1e-13  Score=114.68  Aligned_cols=149  Identities=9%  Similarity=0.088  Sum_probs=111.2

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh----------------hHHHhhcc
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK----------------AYLWQRGL  166 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~----------------~a~~~~G~  166 (310)
                      .++.+.+.|+....  ..+..+..+..+|..++..|++++|+..|++++++.|+++                .+++++|.
T Consensus        19 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   96 (198)
T 2fbn_A           19 FQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT   96 (198)
T ss_dssp             ---CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            45667788876665  6778899999999999999999999999999999999887                89999999


Q ss_pred             chhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHh
Q 021611          167 SLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAF  246 (310)
Q Consensus       167 a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~  246 (310)
                      ++..+|++++|+..|+++++++|+++.++...+.+...+|++++|+..+.++..                          
T Consensus        97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------------------------  150 (198)
T 2fbn_A           97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--------------------------  150 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------------------------
Confidence            999999999999999999999998877555444445577888888777664210                          


Q ss_pred             cCCCCcchhHhhhhhhhhhhhccchhhHH-HHHHHhh
Q 021611          247 SSGRENEYFYASLYAGLFYESQKKADAAK-LHILAAC  282 (310)
Q Consensus       247 ~~~~~~d~~~a~~~lG~~~~~~G~~d~A~-~~~~kAl  282 (310)
                         ..|+...++..++.++..+|+.+++. ..|.+..
T Consensus       151 ---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          151 ---LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             ---HSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred             ---HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               01233445667888888888888877 4444433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.33  E-value=9.4e-14  Score=128.35  Aligned_cols=206  Identities=9%  Similarity=-0.047  Sum_probs=133.5

Q ss_pred             cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg  172 (310)
                      ...+|...+.+++..    ...|..+.++..+|.++...|++++|+..|++++++.|..      ..++.++|.++...|
T Consensus        62 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  141 (406)
T 3sf4_A           62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG  141 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence            345566666665431    1366778888999999999999999999999999887765      348888999999999


Q ss_pred             h--------------------hhhhhhhhhhhhccCCCCC----ccceeeeehhh--hhcChHHHHHhHHHhcC----CC
Q 021611          173 R--------------------FEEGAEQFRIDVAQNPNDT----EESIWCFLCEA--QLYGVDEARNRFLEVGR----DP  222 (310)
Q Consensus       173 ~--------------------~~eA~~~f~~Al~l~P~d~----~~~~~~~l~~a--~l~~~~eA~~~l~~~~~----d~  222 (310)
                      +                    +++|++.|++++++.+...    .+..+..++..  ..|++++|+..+.++..    .+
T Consensus       142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  221 (406)
T 3sf4_A          142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  221 (406)
T ss_dssp             HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred             CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence            9                    8888888888887632211    11233333333  67888888887765321    11


Q ss_pred             h-h----hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611          223 R-P----VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR  289 (310)
Q Consensus       223 ~-~----~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~  289 (310)
                      . +    .+......+...|++++|+..+...        .......++..+|.++..+|++++|+.+|++++++.....
T Consensus       222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  301 (406)
T 3sf4_A          222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN  301 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence            1 1    1112222344467777776655321        1112245666788888888888888888888887421111


Q ss_pred             C----hHHHHHHHHHhhcccCCc
Q 021611          290 S----DDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       290 s----~~~~~~la~~~~~~~~~~  308 (310)
                      +    ...+..+|.++..+|+|.
T Consensus       302 ~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          302 DRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHH
Confidence            1    345667788888888763

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.3e-12  Score=104.18  Aligned_cols=122  Identities=16%  Similarity=0.239  Sum_probs=101.3

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES  195 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~  195 (310)
                      .+|.++..++.+|..++..|++++|+..|+++++++|++   ..+++++|.++..+|++++|++.|+++++++|+++.  
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--  100 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK--  100 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH--
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH--
Confidence            678889999999999999999999999999999999997   899999999999999999999999999999886532  


Q ss_pred             eeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHH
Q 021611          196 IWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAK  275 (310)
Q Consensus       196 ~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~  275 (310)
                                                                                   +++.+|.++..+|++++|+
T Consensus       101 -------------------------------------------------------------~~~~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A          101 -------------------------------------------------------------ALYRRSQALEKLGRLDQAV  119 (148)
T ss_dssp             -------------------------------------------------------------HHHHHHHHHHHHTCHHHHH
T ss_pred             -------------------------------------------------------------HHHHHHHHHHHcCCHHHHH
Confidence                                                                         1234667777788888888


Q ss_pred             HHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          276 LHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       276 ~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      .+|+++++..  +.+.+.+..++.+....+
T Consensus       120 ~~~~~al~~~--p~~~~~~~~l~~~~~~~~  147 (148)
T 2dba_A          120 LDLQRCVSLE--PKNKVFQEALRNISGPSS  147 (148)
T ss_dssp             HHHHHHHHHC--SSCHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHcC--CCcHHHHHHHHHHHhhcC
Confidence            8888888743  334566667777665543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.32  E-value=8e-13  Score=131.01  Aligned_cols=141  Identities=14%  Similarity=0.043  Sum_probs=98.8

Q ss_pred             ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHH
Q 021611          137 QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL  216 (310)
Q Consensus       137 ~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~  216 (310)
                      .|++++|++.|+++++++|++..+++++|.++...|++++|++.|+++++++|+++..+...+.+...+|++++|+..+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999987754433334446788888877766


Q ss_pred             HhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHH
Q 021611          217 EVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAA  296 (310)
Q Consensus       217 ~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~  296 (310)
                      ++..                             ..++...+++.+|.++..+|++++|+.+|+++++..  +.+.+.+.+
T Consensus        82 ~al~-----------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~  130 (568)
T 2vsy_A           82 QASD-----------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQ  130 (568)
T ss_dssp             HHHH-----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHh-----------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            5210                             123345567789999999999999999999999954  345688899


Q ss_pred             HHHHhhcccCCc
Q 021611          297 LAKVHSLCRNWS  308 (310)
Q Consensus       297 la~~~~~~~~~~  308 (310)
                      ++.++..+++|.
T Consensus       131 l~~~~~~~~~~g  142 (568)
T 2vsy_A          131 LLNWRRRLCDWR  142 (568)
T ss_dssp             HHHHHHHTTCCT
T ss_pred             HHHHHHHhhccc
Confidence            999999997774

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.32  E-value=1.2e-13  Score=111.15  Aligned_cols=88  Identities=9%  Similarity=0.112  Sum_probs=81.6

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-------hHHHhhccchhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-------AYLWQRGLSLYYLDR  173 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-------~a~~~~G~a~~~lg~  173 (310)
                      .+.+.+|...|++++.  ++|+++.+|+++|.++..+|++++|+++|+++|+++|++.       .++.++|.++..+|+
T Consensus        21 ~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~   98 (127)
T 4gcn_A           21 QKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND   98 (127)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC
Confidence            3467789999999998  9999999999999999999999999999999999999864       478889999999999


Q ss_pred             hhhhhhhhhhhhccCCC
Q 021611          174 FEEGAEQFRIDVAQNPN  190 (310)
Q Consensus       174 ~~eA~~~f~~Al~l~P~  190 (310)
                      +++|++.|+++++.+|+
T Consensus        99 ~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           99 LSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhhCcC
Confidence            99999999999999885

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.32  E-value=2.5e-13  Score=107.86  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      .+|.++..|+.+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++...
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999988755544


Q ss_pred             eehhhhhcChHHHHHhHHH
Q 021611          199 FLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~  217 (310)
                      +.+...+|++++|+..+.+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQR  102 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHH
Confidence            4455578999999888776

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.32  E-value=3.5e-13  Score=126.24  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=74.1

Q ss_pred             cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCc-------chhhHHHhhccchhhh
Q 021611          103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-------RQKAYLWQRGLSLYYL  171 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-------~~~~a~~~~G~a~~~l  171 (310)
                      ...+|...+.+++..    .-+|..+.+++.+|.++..+|++++|+..|++|+++.+       ....++.++|.++..+
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  197 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL  197 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence            455566666666551    11445667778888888888888888888888877733       3345777788888888


Q ss_pred             hhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHH
Q 021611          172 DRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLE  217 (310)
Q Consensus       172 g~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~  217 (310)
                      |++++|++.|++++++.|+...    +..+..++.  ..+|++++|+..+.+
T Consensus       198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  249 (383)
T 3ulq_A          198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR  249 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888888888777554321    112223332  356777777776655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.31  E-value=5.2e-13  Score=103.29  Aligned_cols=131  Identities=21%  Similarity=0.180  Sum_probs=104.6

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhh
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ  204 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~  204 (310)
                      .+|+.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++..+.....+...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999876532222222335


Q ss_pred             hcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          205 LYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       205 l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      .|++++|...+.++..                             ..++....++.+|.++..+|++++|+.+|+++++.
T Consensus        82 ~~~~~~A~~~~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALE-----------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHH-----------------------------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            6667777666554210                             01222345667899999999999999999999983

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.31  E-value=2.4e-12  Score=97.95  Aligned_cols=114  Identities=13%  Similarity=0.133  Sum_probs=94.1

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  202 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~  202 (310)
                      .+..++.+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|+++.         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------   73 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---------   73 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---------
Confidence            46789999999999999999999999999999999999999999999999999999999999999886532         


Q ss_pred             hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611          203 AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC  282 (310)
Q Consensus       203 a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl  282 (310)
                                                                            +++.+|.++..+|++++|+.+|++++
T Consensus        74 ------------------------------------------------------~~~~~a~~~~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           74 ------------------------------------------------------GYSRKAAALEFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             ------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                                                                  12246667777888888888888888


Q ss_pred             cCCCCCCChHHHHHHHHHh
Q 021611          283 ESPYGQRSDDYMAALAKVH  301 (310)
Q Consensus       283 ~~~~~~~s~~~~~~la~~~  301 (310)
                      +..  +.+...+..++.+.
T Consensus       100 ~~~--~~~~~~~~~l~~~~  116 (118)
T 1elw_A          100 KHE--ANNPQLKEGLQNME  116 (118)
T ss_dssp             TTC--TTCHHHHHHHHHHH
T ss_pred             HcC--CCCHHHHHHHHHhh
Confidence            743  34556666666654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.30  E-value=1.7e-13  Score=133.72  Aligned_cols=169  Identities=11%  Similarity=0.003  Sum_probs=118.4

Q ss_pred             CchhHHHHHHHhhhhh------------eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          119 NNSREAVVAIRRGMLL------------FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~------------~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      ++|+.  +|..+|...            ..++++++|++.|+++++.+|+...++.++|.+++..|+|++|+..|+++++
T Consensus       219 i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~  296 (457)
T 1kt0_A          219 LGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS  296 (457)
T ss_dssp             ECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            67775  777777543            4788999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhh
Q 021611          187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLF  264 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~  264 (310)
                      ++|++..  .+    .    ...+......      ...+......+...+++++|+..+..  ...++...+++.+|.+
T Consensus       297 ~~p~~~~--~~----~----~~~~~~~~~~------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          297 WLEMEYG--LS----E----KESKASESFL------LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             HHTTCCS--CC----H----HHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             Hhccccc--CC----h----HHHHHHHHHH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            9998753  00    0    0000000000      00011111122234555555555532  1234567788899999


Q ss_pred             hhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611          265 YESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       265 ~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~  307 (310)
                      |..+|++++|+.+|++|+++..  .+...+..++.++..+|++
T Consensus       361 ~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          361 QLLMNEFESAKGDFEKVLEVNP--QNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999653  3457788888888777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.30  E-value=2e-13  Score=111.02  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=99.4

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .+..|...|.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+
T Consensus        28 ~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  105 (166)
T 1a17_A           28 DYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE  105 (166)
T ss_dssp             CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            56678899999998  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeeh--hhhhcChHHHHHhHHH
Q 021611          183 IDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLE  217 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~~  217 (310)
                      ++++++|++.....+...+  ....|++++|+..+.+
T Consensus       106 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A          106 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            9999999987754334444  2256778888877664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.30  E-value=4.9e-13  Score=112.40  Aligned_cols=153  Identities=8%  Similarity=-0.093  Sum_probs=121.1

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchh-hhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLY-YLDRFEEGAE  179 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~-~lg~~~eA~~  179 (310)
                      .+...+|...|.+++.  .+|+++.+|+.+|.++..+|++++|+..|+++++++| ++..+..+|.+.. ..++..+|++
T Consensus        19 ~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           19 QGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             TTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             cCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHH
Confidence            3456789999999998  9999999999999999999999999999999999999 7776666664433 3345667899


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhh
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASL  259 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~  259 (310)
                      .|+++++++|+++..+...+.+....|++++|+..+.++..                           ..+......++.
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---------------------------~~p~~~~~~a~~  148 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK---------------------------VNLGAQDGEVKK  148 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------------------TCTTTTTTHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------------------------hCcccChHHHHH
Confidence            99999999999987555444445577888888877765211                           111122244677


Q ss_pred             hhhhhhhhccchhhHHHHHHHhhc
Q 021611          260 YAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       260 ~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      .+|.++..+|+.++|..+|++++.
T Consensus       149 ~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          149 TFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHHH
Confidence            899999999999999999999986

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.29  E-value=3.4e-13  Score=112.56  Aligned_cols=119  Identities=11%  Similarity=0.044  Sum_probs=101.2

Q ss_pred             ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccc-hhhhhhh--
Q 021611           98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLS-LYYLDRF--  174 (310)
Q Consensus        98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a-~~~lg~~--  174 (310)
                      +...+...+|...+.+++.  .+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            4444566778899999998  9999999999999999999999999999999999999999999999999 7899999  


Q ss_pred             hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      ++|+..|+++++++|+++..+...+.+....|++++|...+.++
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            99999999999999998875444444444789999999988763

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.29  E-value=1e-13  Score=105.99  Aligned_cols=69  Identities=16%  Similarity=0.240  Sum_probs=67.3

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d  191 (310)
                      ++.+|+.+|.+++..|++++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            578999999999999999999999999999999999999999999999999999999999999999987

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.28  E-value=1.6e-13  Score=122.23  Aligned_cols=206  Identities=10%  Similarity=-0.029  Sum_probs=144.2

Q ss_pred             cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg  172 (310)
                      ...++...+.+++..    ...|..+.++..+|.++...|++++|+..|++++++.|...      .++..+|.++...|
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~  137 (338)
T 3ro2_A           58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG  137 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence            455677777766541    13677889999999999999999999999999999987653      38999999999999


Q ss_pred             h--------------------hhhhhhhhhhhhccCCCCC----ccceeeeehh--hhhcChHHHHHhHHHhcC------
Q 021611          173 R--------------------FEEGAEQFRIDVAQNPNDT----EESIWCFLCE--AQLYGVDEARNRFLEVGR------  220 (310)
Q Consensus       173 ~--------------------~~eA~~~f~~Al~l~P~d~----~~~~~~~l~~--a~l~~~~eA~~~l~~~~~------  220 (310)
                      +                    +++|++.+++++++.+...    ....+..++.  ...|++++|...+.++..      
T Consensus       138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  217 (338)
T 3ro2_A          138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  217 (338)
T ss_dssp             HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence            9                    9999999999988632211    1123333333  367999999998776422      


Q ss_pred             CChh---hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611          221 DPRP---VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR  289 (310)
Q Consensus       221 d~~~---~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~  289 (310)
                      ++..   .+......+...|++++++..+...        .......++..+|.++..+|++++|+.+|+++++......
T Consensus       218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  297 (338)
T 3ro2_A          218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK  297 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence            1111   1112222344467888876665421        1122355667799999999999999999999998421111


Q ss_pred             ----ChHHHHHHHHHhhcccCCc
Q 021611          290 ----SDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       290 ----s~~~~~~la~~~~~~~~~~  308 (310)
                          ....+..+|.++..+|++.
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~  320 (338)
T 3ro2_A          298 DRIGEGRACWSLGNAYTALGNHD  320 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCChH
Confidence                1346678899999998864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.28  E-value=2.6e-12  Score=111.98  Aligned_cols=181  Identities=13%  Similarity=0.093  Sum_probs=131.5

Q ss_pred             cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh----hhhhhhhh
Q 021611          105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD----RFEEGAEQ  180 (310)
Q Consensus       105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg----~~~eA~~~  180 (310)
                      ++|...|.++..    ..++.+++.+|.++...|++++|+..|+++++.  +++.+++++|.++.. +    ++++|++.
T Consensus         3 ~eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            356677777664    367999999999999999999999999999875  578999999999998 7    99999999


Q ss_pred             hhhhhccCCCCCccceeeeehhh--h----hcChHHHHHhHHHhcC-CC----hhhHHHHHHhh-cC---CCChHHHHHH
Q 021611          181 FRIDVAQNPNDTEESIWCFLCEA--Q----LYGVDEARNRFLEVGR-DP----RPVMREAYNMF-KG---GGDPEKLVAA  245 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~~a--~----l~~~~eA~~~l~~~~~-d~----~~~~~~a~~l~-~~---~~~~e~al~~  245 (310)
                      |+++++  ++++.+  +..++..  .    .+++++|+..+.++.. ++    ...+..+..++ .+   .+++++++..
T Consensus        76 ~~~A~~--~g~~~a--~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVE--AGSKSG--EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHH--TTCHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHH--CCCHHH--HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            999965  455654  3344433  3    5689999999988654 34    23333332233 32   4568888887


Q ss_pred             hcCCCC-cchhHhhhhhhhhhhhc-c-----chhhHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 021611          246 FSSGRE-NEYFYASLYAGLFYESQ-K-----KADAAKLHILAACESPYGQRSDDYMAALAKV  300 (310)
Q Consensus       246 ~~~~~~-~d~~~a~~~lG~~~~~~-G-----~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~  300 (310)
                      +..... +....+.+.+|.+|... |     ++++|+.+|++|++.  |  +.+....|+.+
T Consensus       152 ~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g--~~~A~~~l~~l  209 (212)
T 3rjv_A          152 FKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--G--FDTGCEEFDRI  209 (212)
T ss_dssp             HHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--T--CHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--C--CHHHHHHHHHh
Confidence            763321 24455788999988654 3     899999999999993  2  34555555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.27  E-value=1.1e-12  Score=109.49  Aligned_cols=129  Identities=9%  Similarity=-0.059  Sum_probs=97.0

Q ss_pred             HhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh-hhhhcC
Q 021611          129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC-EAQLYG  207 (310)
Q Consensus       129 ~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~-~a~l~~  207 (310)
                      ..+..+...|++++|++.|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++..+...+.+ ....|+
T Consensus        15 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~   94 (177)
T 2e2e_A           15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ   94 (177)
T ss_dssp             TTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred             hhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence            3455678899999999999999999999999999999999999999999999999999999887643322222 224556


Q ss_pred             h--HHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          208 V--DEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       208 ~--~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      +  ++|+..+.++..                             ..|+...+++.+|.++..+|++++|+.+|+++++..
T Consensus        95 ~~~~~A~~~~~~al~-----------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           95 HMTAQTRAMIDKALA-----------------------------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CCCHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHHHHHH-----------------------------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            5  666665553100                             123345567789999999999999999999999964


Q ss_pred             C
Q 021611          286 Y  286 (310)
Q Consensus       286 ~  286 (310)
                      .
T Consensus       146 p  146 (177)
T 2e2e_A          146 S  146 (177)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.26  E-value=1.2e-12  Score=119.53  Aligned_cols=145  Identities=11%  Similarity=0.025  Sum_probs=116.1

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+...+|...|.+++.  ++|+++.+++.+|.++..+|++++|++.|+++++++|+....+...+..+...++.++|++
T Consensus       129 ~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~  206 (287)
T 3qou_A          129 QESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQ  206 (287)
T ss_dssp             HTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHH
Confidence            34467789999999998  9999999999999999999999999999999999999888888889999999999999999


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCC--hhhHHHHHHhhcCCCChHHHHHHh
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDP--RPVMREAYNMFKGGGDPEKLVAAF  246 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~--~~~~~~a~~l~~~~~~~e~al~~~  246 (310)
                      .|+++++++|+++++.+..+......|++++|+..+.++   .|+.  .........++...|+.+++...+
T Consensus       207 ~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~  278 (287)
T 3qou_A          207 QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY  278 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence            999999999999885444444455789999999988774   3333  222233334455555555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.26  E-value=5.2e-13  Score=104.37  Aligned_cols=92  Identities=10%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+.+.+|...|.+++.  .+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++.
T Consensus        29 ~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  106 (133)
T 2lni_A           29 KGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV  106 (133)
T ss_dssp             TTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHH
Confidence            3356778999999998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCcc
Q 021611          181 FRIDVAQNPNDTEE  194 (310)
Q Consensus       181 f~~Al~l~P~d~~~  194 (310)
                      |+++++++|++...
T Consensus       107 ~~~~~~~~p~~~~~  120 (133)
T 2lni_A          107 YQKALDLDSSCKEA  120 (133)
T ss_dssp             HHHHHHHCGGGTHH
T ss_pred             HHHHHHhCCCchHH
Confidence            99999999987653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.24  E-value=4.4e-13  Score=131.76  Aligned_cols=97  Identities=13%  Similarity=0.114  Sum_probs=67.1

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      |+.+.+++.+|.++..+|++++|++.|++|++++|++..+++++|.++..+|++++|++.|+++++++|+++.++...+.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45566677777777777777777777777777777777777777777777777777777777777777776654333333


Q ss_pred             hhhhhcChHHHHHhHHH
Q 021611          201 CEAQLYGVDEARNRFLE  217 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~  217 (310)
                      +...+|++++|+..+.+
T Consensus        83 ~~~~~g~~~eA~~~~~~   99 (477)
T 1wao_1           83 SNMALGKFRAALRDYET   99 (477)
T ss_dssp             HHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            33356667776666554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.23  E-value=2.3e-12  Score=122.54  Aligned_cols=170  Identities=9%  Similarity=-0.053  Sum_probs=130.4

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc-ccccchhhhhhccccCcchhhHHHhhccchhhh-h-hhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-D-RFEEGAE  179 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l-g-~~~eA~~  179 (310)
                      +.+++..++++++.  +||+++.+|+.||.++..+| +++++++.++++|+.+|++..+|+.|+.++..+ + +++++++
T Consensus        69 ~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           69 KSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            66789999999998  99999999999999999999 599999999999999999999999999999998 8 9999999


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChH--------HHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCC
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVD--------EARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRE  251 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~--------eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~  251 (310)
                      .++++++++|++..++.++..+..++++++        ++++.+.+                           .+.  .+
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k---------------------------~I~--~d  197 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE---------------------------MLR--VD  197 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---------------------------HHH--HC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH---------------------------HHH--hC
Confidence            999999999999874333333333444433        22222111                           111  23


Q ss_pred             cchhHhhhhhhhhhhhccc-------hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          252 NEYFYASLYAGLFYESQKK-------ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       252 ~d~~~a~~~lG~~~~~~G~-------~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      +....|+.++|.++...|+       ++++++++++++++..  .+.-.|..+..+....|
T Consensus       198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcC
Confidence            4556778888888888876       6899999999998543  34566666655555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.23  E-value=1.3e-12  Score=108.01  Aligned_cols=97  Identities=12%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhcccc------------------CcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------------------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRI  183 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------------------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~  183 (310)
                      ..+..+..+|..++..|+|++|+..|++++++                  +|.+..+++++|.++..+|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45789999999999999999999999999999                  888889999999999999999999999999


Q ss_pred             hhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +++++|+++.+++..+.+...+|++++|+..+.++
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence            99999999887666666666899999999988763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.23  E-value=6.2e-12  Score=117.86  Aligned_cols=181  Identities=10%  Similarity=-0.138  Sum_probs=132.0

Q ss_pred             cccchhhhhhhhcCC-----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCc------chhhHHHhhccchhhh
Q 021611          103 FIPSVSGIWDALTGG-----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP------RQKAYLWQRGLSLYYL  171 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~-----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P------~~~~a~~~~G~a~~~l  171 (310)
                      ....|...+.+++..     ...+..+.++.++|.++..+|++++|++.|++|+++.+      ....++.++|.++..+
T Consensus       156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  235 (378)
T 3q15_A          156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS  235 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            445566666666541     12456788999999999999999999999999999843      2356889999999999


Q ss_pred             hhhhhhhhhhhhhhc-----cCCCCCccceeeeehhhhhcChHHHHHhHHHhc---C---CCh--hhHHHHHHhhcCCCC
Q 021611          172 DRFEEGAEQFRIDVA-----QNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---R---DPR--PVMREAYNMFKGGGD  238 (310)
Q Consensus       172 g~~~eA~~~f~~Al~-----l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~---d~~--~~~~~a~~l~~~~~~  238 (310)
                      |++++|++.|+++++     .+|..+.+....+.+..++|++++|...+.++.   +   ++.  .....+..++...++
T Consensus       236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~  315 (378)
T 3q15_A          236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD  315 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            999999999999999     677654433333333447899999999887632   1   221  112233345555666


Q ss_pred             ---hHHHHHHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          239 ---PEKLVAAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       239 ---~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                         .++++..+... ..++.......+|.+|..+|++++|..+|+++++
T Consensus       316 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          316 ERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               66676666532 3334455566799999999999999999999998

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.22  E-value=1.6e-12  Score=121.80  Aligned_cols=147  Identities=13%  Similarity=0.069  Sum_probs=95.2

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-----------------hHHHhhccchh
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-----------------AYLWQRGLSLY  169 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-----------------~a~~~~G~a~~  169 (310)
                      +...|+..+.  ..|+.+..++.+|..++..|+|++|+..|++|++++|++.                 .+++++|.++.
T Consensus       164 ~~~~~~~~~~--~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~  241 (338)
T 2if4_A          164 GKARSDMTVE--ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI  241 (338)
T ss_dssp             CBTTTBCCHH--HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             ccccccCCHH--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            3455655555  6788999999999999999999999999999999999987                 48999999999


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC
Q 021611          170 YLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG  249 (310)
Q Consensus       170 ~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~  249 (310)
                      .+|+|++|+..|+++++++|+++.+++.++.+...+|++++|+..+.++...                            
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----------------------------  293 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----------------------------  293 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------
Confidence            9999999999999999999998876555555555788888888887764321                            


Q ss_pred             CCcchhHhhhhhhhh-hhhccchhhHHHHHHHhhcC
Q 021611          250 RENEYFYASLYAGLF-YESQKKADAAKLHILAACES  284 (310)
Q Consensus       250 ~~~d~~~a~~~lG~~-~~~~G~~d~A~~~~~kAl~~  284 (310)
                       .|+...++..++.+ ....++.+++...|.+++..
T Consensus       294 -~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          294 -APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             ------------------------------------
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence             11122233345544 34456778888888888874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.22  E-value=6.4e-13  Score=102.29  Aligned_cols=75  Identities=12%  Similarity=0.243  Sum_probs=69.3

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      .+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|++++++.|++..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            589999999999999999999999999999999999999999999999999999999999999999999886543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.21  E-value=3.5e-12  Score=98.89  Aligned_cols=127  Identities=15%  Similarity=0.217  Sum_probs=105.0

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      |..+..|+.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|++...  +   
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~---   75 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--Y---   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--H---
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--H---
Confidence            46788999999999999999999999999999999999999999999999999999999999999998854320  0   


Q ss_pred             hhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHH
Q 021611          201 CEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILA  280 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~k  280 (310)
                                                                         .....+++.+|.++..+|++++|+.+|++
T Consensus        76 ---------------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~  104 (131)
T 1elr_A           76 ---------------------------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNK  104 (131)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                                                               00122345688999999999999999999


Q ss_pred             hhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          281 ACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       281 Al~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      +++..  + +++....++.+....+.
T Consensus       105 ~~~~~--~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A          105 SLAEH--R-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHC--C-CHHHHHHHHHHHHHHHH
T ss_pred             HHHhC--C-CHHHHHHHHHHHHHHHH
Confidence            99943  2 46777788777665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.21  E-value=5e-12  Score=115.14  Aligned_cols=160  Identities=8%  Similarity=-0.044  Sum_probs=112.4

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcc------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc----c
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE----E  194 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~----~  194 (310)
                      ..+...|.++..+|++++|++.|++|+++.+.      ...++.++|.++..+|++++|+.+|++++++.|+...    +
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            35555678899999999999999999999542      3678999999999999999999999999999875321    1


Q ss_pred             ceeeeehhh--h-hcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccch
Q 021611          195 SIWCFLCEA--Q-LYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKA  271 (310)
Q Consensus       195 ~~~~~l~~a--~-l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~  271 (310)
                      ..+..++..  . +|++++|+..+.++           ..++...            .........+..+|.++..+|++
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~A-----------l~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~  174 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELA-----------GEWYAQD------------QSVALSNKCFIKCADLKALDGQY  174 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHH-----------HHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHhC------------CChHHHHHHHHHHHHHHHHhCCH
Confidence            123333333  3 26666666655542           1111100            00011133456799999999999


Q ss_pred             hhHHHHHHHhhcCCCCCCCh-----HHHHHHHHHhhcccCC
Q 021611          272 DAAKLHILAACESPYGQRSD-----DYMAALAKVHSLCRNW  307 (310)
Q Consensus       272 d~A~~~~~kAl~~~~~~~s~-----~~~~~la~~~~~~~~~  307 (310)
                      ++|+.+|++++++.......     +++.++|.++..+|++
T Consensus       175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  215 (292)
T 1qqe_A          175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (292)
T ss_dssp             HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence            99999999999964332221     2677899999998875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.20  E-value=6.4e-12  Score=109.84  Aligned_cols=169  Identities=14%  Similarity=0.060  Sum_probs=124.0

Q ss_pred             chhcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcchhh---HHHhhccchhh---
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA---YLWQRGLSLYY---  170 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~---a~~~~G~a~~~---  170 (310)
                      +.+.+.+|...+++++.  .+|++   +.+++.+|.++..+|++++|++.|+++++++|+++.   +++.+|.++..   
T Consensus        16 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~   93 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD   93 (225)
T ss_dssp             HHTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence            34467789999999987  77765   589999999999999999999999999999999865   88999998876   


Q ss_pred             ---------------hhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcC
Q 021611          171 ---------------LDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKG  235 (310)
Q Consensus       171 ---------------lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~  235 (310)
                                     .|++++|+..|+++++..|+++.+  +..  ..+++...+......         +..+. .+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a--~~a--~~~l~~~~~~~~~~~---------~~~a~-~~~~  159 (225)
T 2yhc_A           94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT--TDA--TKRLVFLKDRLAKYE---------YSVAE-YYTE  159 (225)
T ss_dssp             --------------CCHHHHHHHHHHHHHHTTCTTCTTH--HHH--HHHHHHHHHHHHHHH---------HHHHH-HHHH
T ss_pred             hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH--HHH--HHHHHHHHHHHHHHH---------HHHHH-HHHH
Confidence                           589999999999999999998753  211  111111111111000         11122 2333


Q ss_pred             CCChHHHHHHhcC----CC-CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          236 GGDPEKLVAAFSS----GR-ENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       236 ~~~~e~al~~~~~----~~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      .|++++|+..+..    .+ .+....+++.+|.++..+|++++|+..++++...
T Consensus       160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            6778887776652    11 2223467889999999999999999999999883

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.19  E-value=1e-12  Score=101.76  Aligned_cols=90  Identities=19%  Similarity=0.286  Sum_probs=85.1

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ....|...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+
T Consensus        27 ~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  104 (131)
T 2vyi_A           27 NFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK  104 (131)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            56678889999988  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCcc
Q 021611          183 IDVAQNPNDTEE  194 (310)
Q Consensus       183 ~Al~l~P~d~~~  194 (310)
                      ++++++|+++..
T Consensus       105 ~~~~~~p~~~~~  116 (131)
T 2vyi_A          105 KALELDPDNETY  116 (131)
T ss_dssp             HHHHHSTTCHHH
T ss_pred             HHHhcCccchHH
Confidence            999999988763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.19  E-value=3.6e-12  Score=108.61  Aligned_cols=111  Identities=12%  Similarity=0.149  Sum_probs=92.0

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .+.+|...|.+++.    | ++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+
T Consensus        21 ~~~~A~~~~~~a~~----~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~   95 (213)
T 1hh8_A           21 DWKGALDAFSAVQD----P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK   95 (213)
T ss_dssp             CHHHHHHHHHTSSS----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcC----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHH
Confidence            45667788877764    3 578999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCC----------------ccceeeeehhhhhcChHHHHHhHHHh
Q 021611          183 IDVAQNPNDT----------------EESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       183 ~Al~l~P~d~----------------~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +++++.|++.                ..+...+.+...+|++++|+..+.++
T Consensus        96 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999876                32222222333677788887777663

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.19  E-value=4.6e-12  Score=119.66  Aligned_cols=181  Identities=12%  Similarity=-0.035  Sum_probs=135.2

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc----------cccchhhhhhccccCcchhhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~----------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg  172 (310)
                      +.++|..++++++.  +||+++.+|+.|+.++..+|+          +++++..++++++.+|++..+|..||.++..+|
T Consensus        45 ~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~  122 (331)
T 3dss_A           45 LDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  122 (331)
T ss_dssp             CSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence            66788999999998  999999999999999999887          689999999999999999999999999999999


Q ss_pred             h--hhhhhhhhhhhhccCCCCCccceeeeehhhhhcC-hHHHHHhHHHh---cCCChhhHH-HHHHhhcC---C------
Q 021611          173 R--FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-VDEARNRFLEV---GRDPRPVMR-EAYNMFKG---G------  236 (310)
Q Consensus       173 ~--~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~-~~eA~~~l~~~---~~d~~~~~~-~a~~l~~~---~------  236 (310)
                      +  ++++++.++++++++|.+.+++.++..+...++. ++++++.+.+.   ++.....+. ....+...   .      
T Consensus       123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~  202 (331)
T 3dss_A          123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  202 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------
T ss_pred             cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccc
Confidence            5  8999999999999999998855545555557777 58888877653   333333332 22222111   0      


Q ss_pred             ----CChHHHHHHhcC--CCCcchhHhhhhhh-hhhhhc----------cchhhHHHHHHHhhcCC
Q 021611          237 ----GDPEKLVAAFSS--GRENEYFYASLYAG-LFYESQ----------KKADAAKLHILAACESP  285 (310)
Q Consensus       237 ----~~~e~al~~~~~--~~~~d~~~a~~~lG-~~~~~~----------G~~d~A~~~~~kAl~~~  285 (310)
                          +.+++++..+..  ...|+...+++|+. ++....          +.++++++.+++.++..
T Consensus       203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~  268 (331)
T 3dss_A          203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE  268 (331)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence                224555555542  23566667777654 443333          46899999999999954

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.17  E-value=1.4e-12  Score=128.11  Aligned_cols=116  Identities=16%  Similarity=0.145  Sum_probs=99.0

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      .+.+.+.+|...|.+++.  ++|+++.+|+++|.++..+|++++|++.|++|++++|+++.+++++|.++..+|++++|+
T Consensus        17 ~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344467789999999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCccceeeeeh--hhhhcChHHHHHhHH
Q 021611          179 EQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFL  216 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~  216 (310)
                      +.|+++++++|+++.+......+  ....|++++|++.+.
T Consensus        95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999998754444444  335678888888776

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.17  E-value=1.1e-12  Score=111.96  Aligned_cols=92  Identities=14%  Similarity=0.167  Sum_probs=85.3

Q ss_pred             hhcccchhhhhhhhcCCCCchhHH----------------HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREA----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR  164 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~----------------~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~  164 (310)
                      .+.+.+|...|.+++.  +.|+++                .+|+++|.++..+|++++|+..|+++++++|++..+++.+
T Consensus        51 ~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  128 (198)
T 2fbn_A           51 KNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKL  128 (198)
T ss_dssp             TTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3456778999999988  888776                8999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       165 G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      |.++..+|++++|++.|+++++++|+++..
T Consensus       129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  158 (198)
T 2fbn_A          129 GVANMYFGFLEEAKENLYKAASLNPNNLDI  158 (198)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            999999999999999999999999998763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.17  E-value=4.1e-12  Score=110.98  Aligned_cols=150  Identities=13%  Similarity=0.014  Sum_probs=107.4

Q ss_pred             eeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC-----CCCCc-cceeeee
Q 021611          135 FRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN-----PNDTE-ESIWCFL  200 (310)
Q Consensus       135 ~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~-----P~d~~-~~~~~~l  200 (310)
                      ...|++++|+..|++|+++        +|....++..+|.++...|++++|+..|++++++.     ++++. ...+..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4467778888888888774        37889999999999999999999999999999884     33322 2234444


Q ss_pred             hh--hhhcChHHHHHhHHHhcC--------C-Chh--hHHHHHHhhcCCCChHHHHHHhcC----------CCCcchhHh
Q 021611          201 CE--AQLYGVDEARNRFLEVGR--------D-PRP--VMREAYNMFKGGGDPEKLVAAFSS----------GRENEYFYA  257 (310)
Q Consensus       201 ~~--a~l~~~~eA~~~l~~~~~--------d-~~~--~~~~a~~l~~~~~~~e~al~~~~~----------~~~~d~~~a  257 (310)
                      +.  ...|++++|+..+.++..        + +..  .+......+...|++++|+..+..          ...+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            43  378999999998776422        1 111  112222345567888887766541          113445667


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      +..+|.++..+|++++|+.+|++++++
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            778999999999999999999999974

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.17  E-value=6e-11  Score=115.25  Aligned_cols=172  Identities=12%  Similarity=0.058  Sum_probs=133.3

Q ss_pred             HHHHHHhhhhheecc---ccccchhhhhhccccCcchhhHHHhhccchhhh----hhhhhhhhhhhhhhccCCCCCccce
Q 021611          124 AVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL----DRFEEGAEQFRIDVAQNPNDTEESI  196 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g---~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l----g~~~eA~~~f~~Al~l~P~d~~~~~  196 (310)
                      +.+++.+|.++...|   ++++|+..|.++++.+|.....++++|.++...    +++++|++.|+++.   |+++.+..
T Consensus       176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~  252 (452)
T 3e4b_A          176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV  252 (452)
T ss_dssp             TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence            349999999999999   999999999999999999988889999998776    79999999999998   88887544


Q ss_pred             eeeeh-h--hhhcChHHHHHhHHHhc-CCChhhHHH-HHHhhcCC---CChHHHHHHhcCCCCcchhHhhhhhhhhhhh-
Q 021611          197 WCFLC-E--AQLYGVDEARNRFLEVG-RDPRPVMRE-AYNMFKGG---GDPEKLVAAFSSGRENEYFYASLYAGLFYES-  267 (310)
Q Consensus       197 ~~~l~-~--a~l~~~~eA~~~l~~~~-~d~~~~~~~-a~~l~~~~---~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~-  267 (310)
                      ..+.. .  ...+++++|+..+.++. .+....+.. ...+..+.   .++++++..+.... +....+++.+|.+|.. 
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G  331 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRG  331 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCC
Confidence            43333 2  24678999999998753 333333222 22223322   37888999988766 7778899999998876 


Q ss_pred             ---ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611          268 ---QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL  303 (310)
Q Consensus       268 ---~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~  303 (310)
                         ..++++|+.+|++|.+.    .+.+..++||.++..
T Consensus       332 ~g~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          332 YLGKVYPQKALDHLLTAARN----GQNSADFAIAQLFSQ  366 (452)
T ss_dssp             TTSSCCHHHHHHHHHHHHTT----TCTTHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHhh----ChHHHHHHHHHHHHh
Confidence               34999999999999993    245778899888763

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.15  E-value=1e-12  Score=104.29  Aligned_cols=89  Identities=13%  Similarity=0.184  Sum_probs=84.3

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +.+.+|...|.+++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|
T Consensus        23 ~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  100 (137)
T 3q49_B           23 RKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL  100 (137)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            356778999999998  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCC
Q 021611          182 RIDVAQNPNDT  192 (310)
Q Consensus       182 ~~Al~l~P~d~  192 (310)
                      +++++++|++.
T Consensus       101 ~~a~~~~p~~~  111 (137)
T 3q49_B          101 QRAYSLAKEQR  111 (137)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHChhHH
Confidence            99999999743

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.15  E-value=4e-12  Score=99.02  Aligned_cols=85  Identities=9%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      .+...+.+++.  .+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46678888998  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC
Q 021611          186 AQNPNDT  192 (310)
Q Consensus       186 ~l~P~d~  192 (310)
                      +++|++.
T Consensus        81 ~~~~~~~   87 (115)
T 2kat_A           81 AAAQSRG   87 (115)
T ss_dssp             HHHHHHT
T ss_pred             Hhccccc
Confidence            9998654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.15  E-value=6.4e-12  Score=117.72  Aligned_cols=91  Identities=10%  Similarity=0.150  Sum_probs=77.8

Q ss_pred             hcccchhhhhhhhcCCCCchhHH-----------------HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREA-----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR  164 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~-----------------~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~  164 (310)
                      +.+.+|...|.+++.  ++|++.                 .+|+++|.++..+|++++|+.+|+++++++|++..+++++
T Consensus       193 g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  270 (338)
T 2if4_A          193 EKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR  270 (338)
T ss_dssp             SCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            356678888988888  888887                 4999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       165 G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      |.++..+|++++|+.+|+++++++|+++.+
T Consensus       271 g~a~~~~g~~~~A~~~l~~al~l~p~~~~a  300 (338)
T 2if4_A          271 GKAKAELGQMDSARDDFRKAQKYAPDDKAI  300 (338)
T ss_dssp             HHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence            999999999999999999999999998774

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.15  E-value=4.4e-12  Score=97.98  Aligned_cols=114  Identities=19%  Similarity=0.216  Sum_probs=98.6

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...++...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|
T Consensus        15 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   92 (136)
T 2fo7_A           15 GDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY   92 (136)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence            356678888888887  889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      +++++.+|+++........+....|++++|...+.+
T Consensus        93 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  128 (136)
T 2fo7_A           93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK  128 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            999999998866433222333467888888887765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=5.7e-12  Score=100.38  Aligned_cols=91  Identities=20%  Similarity=0.182  Sum_probs=85.3

Q ss_pred             hhcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA  177 (310)
                      .+.+.+|...|.+++.  ++|++   +.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|
T Consensus        41 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  118 (148)
T 2dba_A           41 CGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQA  118 (148)
T ss_dssp             TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHH
Confidence            3356778899999998  88987   999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCCCc
Q 021611          178 AEQFRIDVAQNPNDTE  193 (310)
Q Consensus       178 ~~~f~~Al~l~P~d~~  193 (310)
                      +..|+++++++|++..
T Consensus       119 ~~~~~~al~~~p~~~~  134 (148)
T 2dba_A          119 VLDLQRCVSLEPKNKV  134 (148)
T ss_dssp             HHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHcCCCcHH
Confidence            9999999999998865

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.13  E-value=1.3e-11  Score=103.73  Aligned_cols=156  Identities=13%  Similarity=0.038  Sum_probs=113.7

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc------cCcchhhHHHhhccchhhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE------LDPRQKAYLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~------l~P~~~~a~~~~G~a~~~lg~~~eA  177 (310)
                      ..+|...+.....  ..+..+.++..+|.++...|++++|+..|+++++      ..|....++.++|.++...|++++|
T Consensus         8 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   85 (203)
T 3gw4_A            8 YALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA   85 (203)
T ss_dssp             HHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            3445553333332  2237889999999999999999999999999999      6677788999999999999999999


Q ss_pred             hhhhhhhhcc---CCCCC--ccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCC
Q 021611          178 AEQFRIDVAQ---NPNDT--EESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR  250 (310)
Q Consensus       178 ~~~f~~Al~l---~P~d~--~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~  250 (310)
                      ++.|++++++   .++++  ....+..++..  .+|++++|...+.++.           .+...            ...
T Consensus        86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----------~~~~~------------~~~  142 (203)
T 3gw4_A           86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL-----------VYAQQ------------ADD  142 (203)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------HHHHH------------TTC
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----------HHHHh------------ccc
Confidence            9999999998   44332  12233333333  6788888887776521           11110            011


Q ss_pred             CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          251 ENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       251 ~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      ......++..+|.++..+|++++|+.++++++++
T Consensus       143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            1112334567999999999999999999999984

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.13  E-value=1.4e-11  Score=104.61  Aligned_cols=60  Identities=18%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhh----------hhhhhhhhhhccCCCCCcc
Q 021611          135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE----------EGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~----------eA~~~f~~Al~l~P~d~~~  194 (310)
                      -+.+.|++|++.|+++++++|+++.+|+++|.++..+|+++          +|+..|++|++++|+++.+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A   82 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence            45688999999999999999999999999999999999865          9999999999999998764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.13  E-value=2.2e-11  Score=114.13  Aligned_cols=160  Identities=11%  Similarity=0.064  Sum_probs=114.8

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccC------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-----
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELD------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-----  193 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-----  193 (310)
                      -.|+.+|..++..|++++|+..|++|+++-      |....+++++|.++..+|++++|++.+++++++.++...     
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence            467889999999999999999999998873      345678889999999999999999999999987654322     


Q ss_pred             cceeeeehh--hhhcChHHHHHhHHHhcC-----CChhh----HHHHHHhhcCCCChHHHHHHhcCC-------CCcchh
Q 021611          194 ESIWCFLCE--AQLYGVDEARNRFLEVGR-----DPRPV----MREAYNMFKGGGDPEKLVAAFSSG-------RENEYF  255 (310)
Q Consensus       194 ~~~~~~l~~--a~l~~~~eA~~~l~~~~~-----d~~~~----~~~a~~l~~~~~~~e~al~~~~~~-------~~~d~~  255 (310)
                      +..+..++.  ..+|++++|...+.++..     .....    +......+...|++++|+..+...       ..+...
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            122333333  367889999888766322     11111    112222344467888877666421       334446


Q ss_pred             HhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          256 YASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      .+++.+|.++..+|++++|+.++++++++
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            67788999999999999999999999984

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.13  E-value=5.5e-12  Score=98.96  Aligned_cols=93  Identities=20%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhhhhhhhhhhhhhhhhccCCCC---Cccceee
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND---TEESIWC  198 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d---~~~~~~~  198 (310)
                      .+++.+|.+++..|++++|+..|+++++.+|+++   .+++.+|.+++..|++++|++.|+++++.+|++   +.++.+.
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3567777788888888888888888888887776   677778888888888888888888888888777   4434444


Q ss_pred             eehhhhhcChHHHHHhHHH
Q 021611          199 FLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~  217 (310)
                      +.+...+|++++|+..+.+
T Consensus        83 a~~~~~~g~~~~A~~~~~~  101 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQ  101 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            4444467777777777665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=6.7e-12  Score=95.46  Aligned_cols=89  Identities=17%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ...++...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.|+
T Consensus        19 ~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   96 (118)
T 1elw_A           19 NIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE   96 (118)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            56778899999998  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCc
Q 021611          183 IDVAQNPNDTE  193 (310)
Q Consensus       183 ~Al~l~P~d~~  193 (310)
                      ++++++|+++.
T Consensus        97 ~~~~~~~~~~~  107 (118)
T 1elw_A           97 EGLKHEANNPQ  107 (118)
T ss_dssp             HHHTTCTTCHH
T ss_pred             HHHHcCCCCHH
Confidence            99999998865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=2e-12  Score=130.13  Aligned_cols=162  Identities=13%  Similarity=0.039  Sum_probs=120.6

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc--ccccchhhhhhccccCcchhhHHHhhccchhhhh-hhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD-RFEEGAE  179 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g--~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg-~~~eA~~  179 (310)
                      ...++...+++++.  .+|+++.+|++||.++...|  ++++|++.+++++++||++..+|.+||.++..+| +++++++
T Consensus        88 ~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~  165 (567)
T 1dce_A           88 LVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (567)
T ss_dssp             HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence            36678899999998  99999999999999999999  5599999999999999999999999999999999 9999999


Q ss_pred             hhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYF  255 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~  255 (310)
                      .++++++.+|++..+  |.+++..  .+++..++       ..... .         ..+.++++++.+..  ..+|+..
T Consensus       166 ~~~~~I~~~p~n~sa--W~~r~~ll~~l~~~~~~-------~~~~~-~---------~~~~~~eel~~~~~ai~~~P~~~  226 (567)
T 1dce_A          166 FTDSLITRNFSNYSS--WHYRSCLLPQLHPQPDS-------GPQGR-L---------PENVLLKELELVQNAFFTDPNDQ  226 (567)
T ss_dssp             HHHTTTTTTCCCHHH--HHHHHHHHHHHSCCCCS-------SSCCS-S---------CHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HHHHHHHHCCCCccH--HHHHHHHHHhhcccccc-------ccccc-c---------cHHHHHHHHHHHHHHHhhCCCCc
Confidence            999999999999874  5544333  32211000       00000 0         00112222222211  1235566


Q ss_pred             Hhhhhhhhhhhhccchhh------------HHHHHHHhhcCC
Q 021611          256 YASLYAGLFYESQKKADA------------AKLHILAACESP  285 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~------------A~~~~~kAl~~~  285 (310)
                      .+|+|++.++...|++++            |+..|+++++++
T Consensus       227 saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~  268 (567)
T 1dce_A          227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVG  268 (567)
T ss_dssp             HHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTT
T ss_pred             cHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecc
Confidence            788899999988888777            777889998754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.12  E-value=6.7e-12  Score=92.42  Aligned_cols=76  Identities=24%  Similarity=0.429  Sum_probs=70.2

Q ss_pred             Cch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       119 ~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ++| +++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++|+++.+
T Consensus         3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~   79 (91)
T 1na3_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (91)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH
Confidence            344 6789999999999999999999999999999999999999999999999999999999999999999988763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.12  E-value=9.8e-12  Score=97.58  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=70.6

Q ss_pred             eccccccchhhhhhcccc---CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHH
Q 021611          136 RQGDVVGSVAEFDKAIEL---DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  212 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l---~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~  212 (310)
                      .+|++++|+..|++++++   +|+++.+++++|.++..+|+|++|++.|+++++++|+++..+...+.+...+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            479999999999999999   69999999999999999999999999999999999999886665656666899999999


Q ss_pred             HhHHH
Q 021611          213 NRFLE  217 (310)
Q Consensus       213 ~~l~~  217 (310)
                      ..+.+
T Consensus        82 ~~~~~   86 (117)
T 3k9i_A           82 ELLLK   86 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.12  E-value=8.7e-12  Score=94.16  Aligned_cols=88  Identities=10%  Similarity=0.077  Sum_probs=83.7

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcc--hhhHHHhhccchhhh-hhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYL-DRFEEGAE  179 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~l-g~~~eA~~  179 (310)
                      ...+|...+.+++.  ++|+++.+|+.+|.++..+|++++|+..|+++++++|+  +..+++.+|.++..+ |++++|++
T Consensus        21 ~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           21 NYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI   98 (112)
T ss_dssp             CHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred             hHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence            56678899999998  89999999999999999999999999999999999999  999999999999999 99999999


Q ss_pred             hhhhhhccCCCCC
Q 021611          180 QFRIDVAQNPNDT  192 (310)
Q Consensus       180 ~f~~Al~l~P~d~  192 (310)
                      .|+++++..|+++
T Consensus        99 ~~~~~~~~~p~~~  111 (112)
T 2kck_A           99 AEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHGGGCCCCC
T ss_pred             HHHHHhhcccCCC
Confidence            9999999999764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.11  E-value=1.2e-10  Score=110.75  Aligned_cols=189  Identities=13%  Similarity=0.017  Sum_probs=135.2

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheec-c-ccccchhhhhhccccCcchhhHHHhhccchhhhhhhh------
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-G-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE------  175 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~-g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~------  175 (310)
                      ..++...++.++.  .+|+++.+|.+|+.++... + +++++++.++++++++|++..+|..|+.++..+|+++      
T Consensus       105 l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~  182 (349)
T 3q7a_A          105 LEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQ  182 (349)
T ss_dssp             HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhh
Confidence            4568888899998  9999999999999999998 8 9999999999999999999999999999999999999      


Q ss_pred             --hhhhhhhhhhccCCCCCccceeeeehhhhhcC-------hHHHHHhHHH---hcCCChhhHHHHHHhhcCCCC-----
Q 021611          176 --EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-------VDEARNRFLE---VGRDPRPVMREAYNMFKGGGD-----  238 (310)
Q Consensus       176 --eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~-------~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~-----  238 (310)
                        ++++.++++++++|.+..++.++......+++       ++++++.+.+   ..++....+.-...++...+.     
T Consensus       183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~  262 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI  262 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence              99999999999999998754444333445554       5777777655   344433333222122222222     


Q ss_pred             ---------------hHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHH
Q 021611          239 ---------------PEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMA  295 (310)
Q Consensus       239 ---------------~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~  295 (310)
                                     .++....+...        .+....++.-+++.+|..+|+.++|...|+...+ .+.+-.-+||-
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw~  341 (349)
T 3q7a_A          263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYWE  341 (349)
T ss_dssp             HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHH
T ss_pred             cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHHH
Confidence                           22333333211        1134566777899999999999999999999875 23222236654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.10  E-value=3.1e-11  Score=110.59  Aligned_cols=156  Identities=13%  Similarity=0.046  Sum_probs=101.9

Q ss_pred             cccchhhhhhhhcCCCCch------hHHHHHHHhhhhheeccccccchhhhhhccccCcc------hhhHHHhhccchhh
Q 021611          103 FIPSVSGIWDALTGGNNNS------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR------QKAYLWQRGLSLYY  170 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P------~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~------~~~a~~~~G~a~~~  170 (310)
                      .+.+|...|.+++.  +.+      ..+.++.++|.++..+|++++|+..|++|+++.+.      ...++.++|.++..
T Consensus        51 ~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  128 (307)
T 2ifu_A           51 QLEQAKDAYLQEAE--AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP  128 (307)
T ss_dssp             CHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence            45566666666654  332      34578888888888888888888888888888532      24677788888888


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHH
Q 021611          171 LDRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVA  244 (310)
Q Consensus       171 lg~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~  244 (310)
                       |++++|++.|++++++.|+...    ...+..++.  .++|++++|+..+.++..           +...         
T Consensus       129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~---------  187 (307)
T 2ifu_A          129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS-----------MYKE---------  187 (307)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHH---------
T ss_pred             -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHH---------
Confidence             8888888888888888765321    112222222  255666666666554211           0000         


Q ss_pred             HhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          245 AFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       245 ~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                         .........+++.+|.++..+|++++|+.+|++++ +.
T Consensus       188 ---~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~  224 (307)
T 2ifu_A          188 ---MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI  224 (307)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred             ---cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence               00111123355668889999999999999999999 54

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=6.8e-12  Score=98.43  Aligned_cols=90  Identities=14%  Similarity=0.105  Sum_probs=83.5

Q ss_pred             hcccchhhhhhhhcCCCCchhHH---HHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~---~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~  175 (310)
                      +.+.+|...+.+++.  .+|+++   .+++.+|.++..+|++++|+..|+++++++|++   +.+++.+|.++..+|+++
T Consensus        16 ~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~   93 (129)
T 2xev_A           16 GKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT   93 (129)
T ss_dssp             TCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHH
Confidence            356778899999887  788877   899999999999999999999999999999999   888999999999999999


Q ss_pred             hhhhhhhhhhccCCCCCc
Q 021611          176 EGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~  193 (310)
                      +|++.|+++++..|+++.
T Consensus        94 ~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           94 EAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             HHHHHHHHHHHHSTTSHH
T ss_pred             HHHHHHHHHHHHCCCChH
Confidence            999999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.10  E-value=1.4e-11  Score=98.11  Aligned_cols=140  Identities=13%  Similarity=0.057  Sum_probs=104.1

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc--
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE--  193 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~--  193 (310)
                      ..+.++..+|.++...|++++|+..|++++++.|...      .++.++|.++...|++++|++.|++++++.++...  
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            4568999999999999999999999999999987654      48889999999999999999999999997654321  


Q ss_pred             --cceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhcc
Q 021611          194 --ESIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQK  269 (310)
Q Consensus       194 --~~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G  269 (310)
                        ...+..++.  ...|++++|...+.++           ..+...            ....+....++..+|.++..+|
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~~~------------~~~~~~~~~~~~~la~~~~~~g  143 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKH-----------LAIAQE------------LKDRIGEGRACWSLGNAYTALG  143 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHH------------TTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHHHHH------------ccchHhHHHHHHHHHHHHHHcc
Confidence              112222332  2567777777666542           111110            1111223456677999999999


Q ss_pred             chhhHHHHHHHhhcC
Q 021611          270 KADAAKLHILAACES  284 (310)
Q Consensus       270 ~~d~A~~~~~kAl~~  284 (310)
                      ++++|+.++++++++
T Consensus       144 ~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          144 NHDQAMHFAEKHLEI  158 (164)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999999983

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.09  E-value=7.5e-11  Score=114.54  Aligned_cols=63  Identities=11%  Similarity=0.093  Sum_probs=29.9

Q ss_pred             HHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhhhhhhhhhhhhcc
Q 021611          123 EAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       123 ~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~eA~~~f~~Al~l  187 (310)
                      ++.+++.+|.+|..    .+++++|+..|.++++..  ++.+++.+|.++..    .+++++|++.|+++++.
T Consensus       182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  252 (490)
T 2xm6_A          182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ  252 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            34455555555544    455555555555544432  23444444444443    44455555555554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.07  E-value=1.5e-10  Score=112.36  Aligned_cols=186  Identities=13%  Similarity=0.033  Sum_probs=103.3

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFE  175 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~  175 (310)
                      ...|...|.++..    ++++.+++.+|.+|..    .+++++|++.|+++++.  +++.+++++|.++..    .++++
T Consensus       131 ~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          131 KAESVKWFRLAAE----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence            3445555555543    3467777788887776    67788888888887775  456777788877777    77888


Q ss_pred             hhhhhhhhhhccCCCCCccceeeeehhh--h----hcChHHHHHhHHHhcC-CChhhHHHHHHhhcC----CCChHHHHH
Q 021611          176 EGAEQFRIDVAQNPNDTEESIWCFLCEA--Q----LYGVDEARNRFLEVGR-DPRPVMREAYNMFKG----GGDPEKLVA  244 (310)
Q Consensus       176 eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~----l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~----~~~~e~al~  244 (310)
                      +|++.|+++++.++  +.+  +..++..  .    .+++++|+..+.++.. ........+..++..    .+++++++.
T Consensus       205 ~A~~~~~~a~~~~~--~~a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~  280 (490)
T 2xm6_A          205 ISAQWYRKSATSGD--ELG--QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALE  280 (490)
T ss_dssp             HHHHHHHHHHHTTC--HHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             HHHHHHHHHHHCCC--HHH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence            88888888776543  332  2222222  1    3556777776665432 222221111111111    345555555


Q ss_pred             HhcCCCCcchhHhhhhhhhhhhhc-----cchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611          245 AFSSGRENEYFYASLYAGLFYESQ-----KKADAAKLHILAACESPYGQRSDDYMAALAKVHSL  303 (310)
Q Consensus       245 ~~~~~~~~d~~~a~~~lG~~~~~~-----G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~  303 (310)
                      .+..........+.+.+|.+|...     +++++|+.+|+++++.    ...+.+.+||.++..
T Consensus       281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~  340 (490)
T 2xm6_A          281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFR  340 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHh
Confidence            554322222334455556555554     5566666666665552    133445555555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.06  E-value=1.7e-11  Score=116.74  Aligned_cols=110  Identities=12%  Similarity=0.151  Sum_probs=89.4

Q ss_pred             cccchhhhhhhhcCC--------------CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch
Q 021611          103 FIPSVSGIWDALTGG--------------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL  168 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~--------------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~  168 (310)
                      .+.+|...|.+++..              +++|.++.+|+++|.++..+|++++|+++|++|++++|+++.+++.+|.++
T Consensus       238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  317 (370)
T 1ihg_A          238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW  317 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            455677777777641              168889999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHH
Q 021611          169 YYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR  212 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~  212 (310)
                      ..+|++++|+++|+++++++|++.........+...+++.+++.
T Consensus       318 ~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          318 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998763322222222444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.05  E-value=1.1e-11  Score=95.05  Aligned_cols=90  Identities=20%  Similarity=0.318  Sum_probs=84.8

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...+|...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|+..|
T Consensus        23 ~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  100 (125)
T 1na0_A           23 GDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY  100 (125)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            356678899999988  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCc
Q 021611          182 RIDVAQNPNDTE  193 (310)
Q Consensus       182 ~~Al~l~P~d~~  193 (310)
                      +++++++|+++.
T Consensus       101 ~~~~~~~~~~~~  112 (125)
T 1na0_A          101 QKALELDPNNAE  112 (125)
T ss_dssp             HHHHHHCTTCHH
T ss_pred             HHHHHhCCCcHH
Confidence            999999998875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.05  E-value=1.3e-10  Score=105.26  Aligned_cols=167  Identities=5%  Similarity=-0.065  Sum_probs=119.4

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      .+|.....+...+..++..|++++|++.+.++++..|...      ..++.+|.++...|++++|++.|++++++.++..
T Consensus        70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  149 (293)
T 2qfc_A           70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred             cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence            4567778889999999999999999999999999877532      4467799999999999999999999998876543


Q ss_pred             c----cceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcc-hhHhhhhhhhhh
Q 021611          193 E----ESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENE-YFYASLYAGLFY  265 (310)
Q Consensus       193 ~----~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d-~~~a~~~lG~~~  265 (310)
                      .    ..++..++..  ..|++++|+..+.++.           .....            ....+. ...+++++|.+|
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal-----------~~~~~------------~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL-----------KQLEA------------LHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHH------------SCCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHh------------cCccccchHHHHHhHHHHH
Confidence            2    1133333333  5677777777766521           01110            001111 124667899999


Q ss_pred             hhccchhhHHHHHHHhhcCCCCC----CChHHHHHHHHHhhcccCCc
Q 021611          266 ESQKKADAAKLHILAACESPYGQ----RSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       266 ~~~G~~d~A~~~~~kAl~~~~~~----~s~~~~~~la~~~~~~~~~~  308 (310)
                      ..+|++++|+.+|++|+++....    .-...+.++|.++..+|++.
T Consensus       207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  253 (293)
T 2qfc_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE  253 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999742110    11466788999999998863

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.04  E-value=2.8e-10  Score=111.62  Aligned_cols=177  Identities=7%  Similarity=-0.114  Sum_probs=133.3

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-hHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-AYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      +|..+|.+++. .++|+++.+|+.+|.++...|++++|.+.|+++++++|+++ .+|.+.|.++.+.|++++|++.|++|
T Consensus       304 ~A~~~~~~Al~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          304 EAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             HHHHHHHHHTT-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            67888888884 16899999999999999999999999999999999999885 69999999999999999999999999


Q ss_pred             hccCCCCCccceeeeehh-hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC-----CCcc-h
Q 021611          185 VAQNPNDTEESIWCFLCE-AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-----RENE-Y  254 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~-a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-----~~~d-~  254 (310)
                      ++..|.+...+.+..+.. ...|+.++|+..+.++   .|+....+.....++...|+.++|...+...     .+++ .
T Consensus       383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~  462 (530)
T 2ooe_A          383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS  462 (530)
T ss_dssp             HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred             HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence            999887654322222111 2478899999988763   3443344433344556678888887776521     1222 1


Q ss_pred             hHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          255 FYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ...+..........|+.+.+..+++++++
T Consensus       463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          463 GEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            22222334456678999999999999998

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.04  E-value=4e-11  Score=113.26  Aligned_cols=187  Identities=11%  Similarity=0.019  Sum_probs=133.1

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc--cccchhhhhhccccCcchhhHHHhhccchhhhhh-hhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD--VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR-FEEGAE  179 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~--~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~-~~eA~~  179 (310)
                      ...++..+++.++.  .+|+++.+|.+|+.++..+|+  ++++++.++++++++|.+..+|.+||.+....|+ ++++++
T Consensus        89 ~l~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A           89 LVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            34568888899998  999999999999999999995  7899999999999999999999999999999999 599999


Q ss_pred             hhhhhhccCCCCCccceeeeehhh--hh--------------cChHHHHHhHHH---hcCCChhhHH-HHHHhhcCCC--
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEA--QL--------------YGVDEARNRFLE---VGRDPRPVMR-EAYNMFKGGG--  237 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a--~l--------------~~~~eA~~~l~~---~~~d~~~~~~-~a~~l~~~~~--  237 (310)
                      .++++++.+|.|..+  |.+++..  .+              +.++++++.+.+   ..|+....+. ....+....|  
T Consensus       167 ~~~~~I~~~p~N~SA--W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          167 FTDSLITRNFSNYSS--WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             HHHHHHHHCSCCHHH--HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred             HHHHHHHHCCCCHHH--HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence            999999999999874  5554433  44              346777777765   3444333332 2222333322  


Q ss_pred             --------ChHHHHHHhcC--CCCcchhHhhhhhhhhh-----hhccchhhHHHHHHHhhcCCCCCCChHHHHHH
Q 021611          238 --------DPEKLVAAFSS--GRENEYFYASLYAGLFY-----ESQKKADAAKLHILAACESPYGQRSDDYMAAL  297 (310)
Q Consensus       238 --------~~e~al~~~~~--~~~~d~~~a~~~lG~~~-----~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l  297 (310)
                              ..++++..+..  ...|+.  .+.+++.+.     ...|..++...++.+.+++..-.  -.++-.|
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r--~~~y~d~  315 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR--AAYLDDL  315 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG--HHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch--hhHHHHH
Confidence                    23445555432  123343  333444422     24678889999999999965432  2555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.03  E-value=5.2e-11  Score=113.34  Aligned_cols=96  Identities=11%  Similarity=0.110  Sum_probs=86.5

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccc----------------cCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE----------------LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~----------------l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      +.+..|..+|..++..|++++|+..|++|++                ++|.+..+++++|.+++.+|+|++|++++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4568899999999999999999999999999                889999999999999999999999999999999


Q ss_pred             ccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          186 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       186 ~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      +++|+++.++..++.+...+|++++|+..+.+
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999887655555556688899999888775

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.03  E-value=1.4e-10  Score=105.01  Aligned_cols=157  Identities=6%  Similarity=-0.151  Sum_probs=112.7

Q ss_pred             cccchhhhhhhhcCCCCch------hHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhh
Q 021611          103 FIPSVSGIWDALTGGNNNS------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYY  170 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P------~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~  170 (310)
                      ...++...+.+++.  ..|      .....++.+|.++...|++++|+..|++++++.+..      ..+++++|.++..
T Consensus        90 ~y~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           90 RYKEIYNKVWNELK--KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             CHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhc--cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            45567777776654  222      233567789999999999999999999999876543      4588999999999


Q ss_pred             hhhhhhhhhhhhhhh---ccCCCCCcc--ceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHH
Q 021611          171 LDRFEEGAEQFRIDV---AQNPNDTEE--SIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLV  243 (310)
Q Consensus       171 lg~~~eA~~~f~~Al---~l~P~d~~~--~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al  243 (310)
                      +|+|++|++.|++++   +..|++...  .++.+++.  ..+|++++|+..+.++..           +..         
T Consensus       168 ~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~-----------~~~---------  227 (293)
T 2qfc_A          168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE-----------ISC---------  227 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH---------
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH-----------HHH---------
Confidence            999999999999999   456654321  13333333  367888888887775211           000         


Q ss_pred             HHhcCCCCcchhHhhhhhhhhhhhccchhhH-HHHHHHhhcC
Q 021611          244 AAFSSGRENEYFYASLYAGLFYESQKKADAA-KLHILAACES  284 (310)
Q Consensus       244 ~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A-~~~~~kAl~~  284 (310)
                         ..........+++.+|.+|..+|++++| ..+|++|+.+
T Consensus       228 ---~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          228 ---RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             ---HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ---hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence               0111122345677899999999999999 8889999974

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=9.3e-11  Score=106.28  Aligned_cols=159  Identities=7%  Similarity=-0.148  Sum_probs=105.5

Q ss_pred             cccchhhhhhhhcCC-CCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGG-NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~-~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg  172 (310)
                      ...++..++.+++.. ..+|+.   ...+..+|.++...|++++|+..|++|+++.+...      .++.++|.++..+|
T Consensus        90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  169 (293)
T 3u3w_A           90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG  169 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence            456677888877652 123332   22344588899889999999999999998755432      26888999999999


Q ss_pred             hhhhhhhhhhhhhccCC---CCCc--cceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHH
Q 021611          173 RFEEGAEQFRIDVAQNP---NDTE--ESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAA  245 (310)
Q Consensus       173 ~~~eA~~~f~~Al~l~P---~d~~--~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~  245 (310)
                      +|++|++.|+++++.-.   .+..  +.++.+++..  .+|++++|+..+.++..           +..           
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~-----------~~~-----------  227 (293)
T 3u3w_A          170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE-----------ISC-----------  227 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH-----------
T ss_pred             CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHH-----------
Confidence            99999999999985321   1211  1123333333  56777777766654210           000           


Q ss_pred             hcCCCCcchhHhhhhhhhhhhhccc-hhhHHHHHHHhhcC
Q 021611          246 FSSGRENEYFYASLYAGLFYESQKK-ADAAKLHILAACES  284 (310)
Q Consensus       246 ~~~~~~~d~~~a~~~lG~~~~~~G~-~d~A~~~~~kAl~~  284 (310)
                       ..........+++.+|.++..+|+ +++|+.+|++|+++
T Consensus       228 -~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          228 -RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             -HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence             011122235577789999999995 69999999999984

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.00  E-value=4e-11  Score=90.42  Aligned_cols=83  Identities=14%  Similarity=0.248  Sum_probs=71.2

Q ss_pred             HHHhhhhheeccccccchhhhhhccccCcchhh-HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA-YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  205 (310)
Q Consensus       127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~-a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l  205 (310)
                      .+.+|.+++..|++++|+..|+++++++|+++. +++++|.++..+|++++|++.|+++++++|+++.++.+        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            367899999999999999999999999999999 99999999999999999999999999999998874322        


Q ss_pred             cChHHHHHhHHH
Q 021611          206 YGVDEARNRFLE  217 (310)
Q Consensus       206 ~~~~eA~~~l~~  217 (310)
                      +.+.+++..+.+
T Consensus        75 ~~~~~a~~~~~~   86 (99)
T 2kc7_A           75 KMVMDILNFYNK   86 (99)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH
Confidence            334555555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.00  E-value=8.9e-10  Score=95.73  Aligned_cols=156  Identities=9%  Similarity=0.009  Sum_probs=115.4

Q ss_pred             ccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc----ChHHHHHhHH
Q 021611          141 VGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY----GVDEARNRFL  216 (310)
Q Consensus       141 ~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~----~~~eA~~~l~  216 (310)
                      .+|+..|.++.+.  +++.+++++|.++...+++++|++.|+++++.+  ++.+....+..... +    ++++|+..+.
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            4799999999986  678999999999999999999999999998864  45543333322234 5    7999999998


Q ss_pred             Hhc-CCChhhHHHHHHhhcC----CCChHHHHHHhcCCCCcch----hHhhhhhhhhhhh----ccchhhHHHHHHHhhc
Q 021611          217 EVG-RDPRPVMREAYNMFKG----GGDPEKLVAAFSSGRENEY----FYASLYAGLFYES----QKKADAAKLHILAACE  283 (310)
Q Consensus       217 ~~~-~d~~~~~~~a~~l~~~----~~~~e~al~~~~~~~~~d~----~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~  283 (310)
                      ++. +.....+..+..++..    .+++++++..+........    ..+++.+|.+|..    .+++++|+.+|++|++
T Consensus        78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            853 3333333333333332    5678888888864333223    7788999999998    8899999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhhcc
Q 021611          284 SPYGQRSDDYMAALAKVHSLC  304 (310)
Q Consensus       284 ~~~~~~s~~~~~~la~~~~~~  304 (310)
                      . .  .+...+.+||.++...
T Consensus       158 ~-~--~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          158 L-S--RTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             T-S--CTTHHHHHHHHHHHHC
T ss_pred             c-C--CCHHHHHHHHHHHHcC
Confidence            5 1  2447788999988653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.97  E-value=7e-10  Score=107.68  Aligned_cols=173  Identities=14%  Similarity=0.088  Sum_probs=130.1

Q ss_pred             chhHHHHHHHhhhhheeccccccchhh----hhhccccCcchhhHHHhhccchhhhh---hhhhhhhhhhhhhccCCCCC
Q 021611          120 NSREAVVAIRRGMLLFRQGDVVGSVAE----FDKAIELDPRQKAYLWQRGLSLYYLD---RFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~----f~kAl~l~P~~~~a~~~~G~a~~~lg---~~~eA~~~f~~Al~l~P~d~  192 (310)
                      .++++.+++.+|.++...+.+++++..    +..+.+.+|.   +++++|.++...|   ++++|++.|+++.+.+|.++
T Consensus       137 ~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a  213 (452)
T 3e4b_A          137 AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA  213 (452)
T ss_dssp             HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred             HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence            345678899999999999877777666    5555555665   9999999999999   99999999999999999665


Q ss_pred             ccceeeeehhh--h----hcChHHHHHhHHHhcCCChhhHHHHHHh-h--cCCCChHHHHHHhcCCCCcchhHhhhhhhh
Q 021611          193 EESIWCFLCEA--Q----LYGVDEARNRFLEVGRDPRPVMREAYNM-F--KGGGDPEKLVAAFSSGRENEYFYASLYAGL  263 (310)
Q Consensus       193 ~~~~~~~l~~a--~----l~~~~eA~~~l~~~~~d~~~~~~~a~~l-~--~~~~~~e~al~~~~~~~~~d~~~a~~~lG~  263 (310)
                      .  .+..++..  .    .+++++|+..+.++.++....+..+..+ +  ...+++++++..+......+...+++.+|.
T Consensus       214 ~--~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~  291 (452)
T 3e4b_A          214 Q--RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGK  291 (452)
T ss_dssp             H--HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             H--HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4  22333333  2    2578999999988664333333332222 3  457789999888875444556778899999


Q ss_pred             hhhhcc-----chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611          264 FYESQK-----KADAAKLHILAACESPYGQRSDDYMAALAKVHSL  303 (310)
Q Consensus       264 ~~~~~G-----~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~  303 (310)
                      +|. .|     ++++|+.+|++|+     +.+.+.+.+||.++..
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHT
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHC
Confidence            998 66     9999999999999     2366889999988765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.96  E-value=1.2e-10  Score=108.07  Aligned_cols=203  Identities=12%  Similarity=0.058  Sum_probs=137.3

Q ss_pred             cccchhhhhhhhcCCCCchh------HHHHHHHhhhhheeccccccchhhhhhccccC--------cchhhHHHhhccch
Q 021611          103 FIPSVSGIWDALTGGNNNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSL  168 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~  168 (310)
                      ...++...+.+++.  +.|.      ...++.++|.++..+|++++|++.|++++++.        |....++.++|.++
T Consensus        68 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           68 ELTRSLALMQQTEQ--MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             CHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH--HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            45567777777765  3332      24567899999999999999999999999986        44566788899999


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCcc---ceeeeehh--hhhcChHHHHHhHHHhc---CC---ChhhHHH---H-HHhh
Q 021611          169 YYLDRFEEGAEQFRIDVAQNPNDTEE---SIWCFLCE--AQLYGVDEARNRFLEVG---RD---PRPVMRE---A-YNMF  233 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l~P~d~~~---~~~~~l~~--a~l~~~~eA~~~l~~~~---~d---~~~~~~~---a-~~l~  233 (310)
                      ...|++++|+..+++++++.|.....   ..+..++.  ...|++++|...+.++.   +.   +......   . ...+
T Consensus       146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T 1hz4_A          146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW  225 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence            99999999999999999988764221   12223333  26789999998876632   21   1111111   1 1123


Q ss_pred             cCCCChHHHHHHhcCCCC--cc----hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC----ChHHHHHHHHHhhc
Q 021611          234 KGGGDPEKLVAAFSSGRE--NE----YFYASLYAGLFYESQKKADAAKLHILAACESPYGQR----SDDYMAALAKVHSL  303 (310)
Q Consensus       234 ~~~~~~e~al~~~~~~~~--~d----~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~----s~~~~~~la~~~~~  303 (310)
                      ...|+++++...+.....  +.    ....+..+|.++..+|++++|...++++++......    ..+.+..++.++..
T Consensus       226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~  305 (373)
T 1hz4_A          226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ  305 (373)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence            457888888777652211  11    112345688899999999999999999987421111    12355677888888


Q ss_pred             ccCC
Q 021611          304 CRNW  307 (310)
Q Consensus       304 ~~~~  307 (310)
                      .|++
T Consensus       306 ~g~~  309 (373)
T 1hz4_A          306 AGRK  309 (373)
T ss_dssp             HTCH
T ss_pred             hCCH
Confidence            7764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.95  E-value=2.5e-10  Score=104.57  Aligned_cols=159  Identities=11%  Similarity=0.013  Sum_probs=107.8

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC--Cc--c
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND--TE--E  194 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d--~~--~  194 (310)
                      ..+...|.++..+|++++|++.|.+++++.+..      ..++.++|.++..+|++++|++.|++++++.++.  +.  +
T Consensus        37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  116 (307)
T 2ifu_A           37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            345555788999999999999999999997643      5688899999999999999999999999985432  11  1


Q ss_pred             ceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchh
Q 021611          195 SIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKAD  272 (310)
Q Consensus       195 ~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d  272 (310)
                      ..+..++..  . |++++|+..+.++           ..++...            ........++..+|.++..+|+++
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~A-----------l~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~~  172 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQA-----------AAVFENE------------ERLRQAAELIGKASRLLVRQQKFD  172 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHH-----------HHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHH-----------HHHHHhC------------CChhHHHHHHHHHHHHHHHcCCHH
Confidence            122222222  3 4555555554431           1111100            011112345667999999999999


Q ss_pred             hHHHHHHHhhcCCCCCC----ChHHHHHHHHHhhcccCC
Q 021611          273 AAKLHILAACESPYGQR----SDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       273 ~A~~~~~kAl~~~~~~~----s~~~~~~la~~~~~~~~~  307 (310)
                      +|+.+|++++++.....    ...++.+++.+++.+|++
T Consensus       173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  211 (307)
T 2ifu_A          173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY  211 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence            99999999998421111    123666788888888875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.93  E-value=7.3e-11  Score=91.27  Aligned_cols=87  Identities=13%  Similarity=0.179  Sum_probs=81.7

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-------hhHHHhhccchhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-------KAYLWQRGLSLYYLDRF  174 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-------~~a~~~~G~a~~~lg~~  174 (310)
                      +....|...+.+++.  .+|+++.+++.+|.++...|++++|+..|+++++++|++       ..+++.+|.++..+|++
T Consensus        18 ~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   95 (131)
T 1elr_A           18 KDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY   95 (131)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence            356678899999998  899999999999999999999999999999999999987       88999999999999999


Q ss_pred             hhhhhhhhhhhccCCC
Q 021611          175 EEGAEQFRIDVAQNPN  190 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~  190 (310)
                      ++|++.|+++++++|+
T Consensus        96 ~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           96 KDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999984

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.93  E-value=3.4e-10  Score=104.91  Aligned_cols=203  Identities=10%  Similarity=0.058  Sum_probs=134.7

Q ss_pred             cccchhhhhhhhcCCCCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYL  171 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~l  171 (310)
                      ..+++...+.+++.  ..|.     ...++..+|.++...|++++|+..+++++++.|...      .++.++|.++...
T Consensus        29 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           29 NPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             CHHHHHHHHHHHHH--TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            45567777777765  3332     234788999999999999999999999999987643      3367899999999


Q ss_pred             hhhhhhhhhhhhhhccCCCC-----C-ccceeeeehh--hhhcChHHHHHhHHHh---cCCC--hh---hHHHHHHhhcC
Q 021611          172 DRFEEGAEQFRIDVAQNPND-----T-EESIWCFLCE--AQLYGVDEARNRFLEV---GRDP--RP---VMREAYNMFKG  235 (310)
Q Consensus       172 g~~~eA~~~f~~Al~l~P~d-----~-~~~~~~~l~~--a~l~~~~eA~~~l~~~---~~d~--~~---~~~~a~~l~~~  235 (310)
                      |++++|++.|++++++.+..     + ....+..++.  ...|++++|...+.+.   .+..  ..   .+......+..
T Consensus       107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  186 (373)
T 1hz4_A          107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA  186 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence            99999999999999875321     1 1122333333  3689999999988763   2221  11   11122223445


Q ss_pred             CCChHHHHHHhcC------CCC-cchhHhhh--hhhhhhhhccchhhHHHHHHHhhcCCCCCC--ChHHHHHHHHHhhcc
Q 021611          236 GGDPEKLVAAFSS------GRE-NEYFYASL--YAGLFYESQKKADAAKLHILAACESPYGQR--SDDYMAALAKVHSLC  304 (310)
Q Consensus       236 ~~~~e~al~~~~~------~~~-~d~~~a~~--~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~--s~~~~~~la~~~~~~  304 (310)
                      .|+++++...+..      ... +....+..  .++.++..+|++++|..+++++++...+..  ....+..++.++...
T Consensus       187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~  266 (373)
T 1hz4_A          187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL  266 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence            6788887766531      111 11122221  234557899999999999999998442211  122346789999888


Q ss_pred             cCC
Q 021611          305 RNW  307 (310)
Q Consensus       305 ~~~  307 (310)
                      |++
T Consensus       267 g~~  269 (373)
T 1hz4_A          267 GEF  269 (373)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            876

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.92  E-value=7.3e-11  Score=89.79  Aligned_cols=81  Identities=9%  Similarity=0.087  Sum_probs=76.0

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFE  175 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~  175 (310)
                      +.+.+|...|.+++.  ++|+++.+|+++|.++..+|++++|++.|+++++++|++      ..+++.+|.++..+|+++
T Consensus        18 ~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (111)
T 2l6j_A           18 GLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ   95 (111)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence            356789999999998  999999999999999999999999999999999999998      889999999999999999


Q ss_pred             hhhhhhhhh
Q 021611          176 EGAEQFRID  184 (310)
Q Consensus       176 eA~~~f~~A  184 (310)
                      +|++.|++.
T Consensus        96 ~a~~~~~~~  104 (111)
T 2l6j_A           96 IPVVEVDEL  104 (111)
T ss_dssp             CCSSSSSSC
T ss_pred             hhHhHHHHh
Confidence            999988764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=5.7e-10  Score=85.98  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=69.0

Q ss_pred             chhHHHHHHHhhhhheeccc---cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          120 NSREAVVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       120 ~P~~~~a~~~rG~~~~~~g~---~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      +|+++.++..+|.+++..++   .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68999999999999987666   79999999999999999999999999999999999999999999999999844

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.86  E-value=3.5e-09  Score=95.78  Aligned_cols=164  Identities=6%  Similarity=-0.051  Sum_probs=116.1

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh------HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA------YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~------a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      +.....+...+..++..|++++|+..++++++..|..+.      .+..+|.++...|++++|++.|++++++.+.....
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence            444556666788899999999999999999998775433      34458999999999999999999999976654431


Q ss_pred             ----ceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhc
Q 021611          195 ----SIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQ  268 (310)
Q Consensus       195 ----~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~  268 (310)
                          .++..++.  ..+|++++|+..+.++..           .+..          . ....+....+++++|.+|..+
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-----------~~~~----------~-~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILK-----------QLEA----------L-HDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHH----------S-SCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHh----------c-ccchhHHHHHHHHHHHHHHHH
Confidence                12333333  367778888777765211           1110          0 011223445677899999999


Q ss_pred             cchhhHHHHHHHhhcCCC----CCCChHHHHHHHHHhhcccC
Q 021611          269 KKADAAKLHILAACESPY----GQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       269 G~~d~A~~~~~kAl~~~~----~~~s~~~~~~la~~~~~~~~  306 (310)
                      |++++|+.++++|+++..    ...-...+.++|.++..+|+
T Consensus       210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999998421    11124677899999999984

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.83  E-value=4.2e-09  Score=114.31  Aligned_cols=161  Identities=10%  Similarity=-0.034  Sum_probs=122.1

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      .+-|+++++.....+++.+|+++|.++...|++++|++.|.+|     +++.+|...|.++.++|+|++|++.|..|.+.
T Consensus      1089 i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A         1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3445555542234567999999999999999999999999887     78899999999999999999999999999998


Q ss_pred             CCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhh
Q 021611          188 NPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYES  267 (310)
Q Consensus       188 ~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~  267 (310)
                      +++ +....+.+.+.++++++++ .+.+.+. +.. +.+......+...|++++|...+...      ..+..+|.++..
T Consensus      1164 ~~e-~~Idt~LafaYAKl~rlee-le~fI~~-~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A         1164 ARE-SYVETELIFALAKTNRLAE-LEEFING-PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVH 1233 (1630)
T ss_pred             ccc-ccccHHHHHHHHhhcCHHH-HHHHHhC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHH
Confidence            854 2222345556677888775 5555431 122 22223444556688999999998753      245569999999


Q ss_pred             ccchhhHHHHHHHhhc
Q 021611          268 QKKADAAKLHILAACE  283 (310)
Q Consensus       268 ~G~~d~A~~~~~kAl~  283 (310)
                      +|++++|++.+++|..
T Consensus      1234 Lge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1234 LGEYQAAVDGARKANS 1249 (1630)
T ss_pred             hCCHHHHHHHHHHhCC
Confidence            9999999999999965

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.82  E-value=6.8e-10  Score=93.06  Aligned_cols=152  Identities=13%  Similarity=0.057  Sum_probs=98.2

Q ss_pred             heeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC--C--ccceeeeehh--hhhcC
Q 021611          134 LFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND--T--EESIWCFLCE--AQLYG  207 (310)
Q Consensus       134 ~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d--~--~~~~~~~l~~--a~l~~  207 (310)
                      ++..|++++|++.++......+....++..+|.++...|++++|+..|++++++....  .  .+..+..++.  ...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4678999999995555444333678999999999999999999999999999853221  1  1122333332  25677


Q ss_pred             hHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCc-chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611          208 VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGREN-EYFYASLYAGLFYESQKKADAAKLHILAACESPY  286 (310)
Q Consensus       208 ~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~-d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~  286 (310)
                      +++|+..+.++           ..++..            ....+ ....++..+|.++..+|++++|+.++++++++..
T Consensus        82 ~~~A~~~~~~a-----------l~~~~~------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           82 WDAARRCFLEE-----------RELLAS------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHH-----------HHHHHH------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----------HHHHHH------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            77776666542           111110            11111 2345677899999999999999999999997421


Q ss_pred             CCCC----hHHHHHHHHHhhcccCCc
Q 021611          287 GQRS----DDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       287 ~~~s----~~~~~~la~~~~~~~~~~  308 (310)
                      ...+    ...+.++|.++..+|+|.
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~g~~~  164 (203)
T 3gw4_A          139 QADDQVAIACAFRGLGDLAQQEKNLL  164 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hccchHHHHHHHHHHHHHHHHCcCHH
Confidence            1111    123468899999999874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.81  E-value=1.5e-09  Score=106.06  Aligned_cols=163  Identities=8%  Similarity=-0.071  Sum_probs=54.8

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      +.+|..+|.++...|++++|++.|.++     .++.++...|.+....|+|++|+..++.+.+..++ +....-...+.+
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~  105 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence            579999999999999999999999774     56679999999999999999999999999985443 332222333455


Q ss_pred             hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          204 QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       204 ~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ++|+++++.+.+..  ++.. .+..+...+...|.+++|...+...      ..+..++.++..+|++++|++.+++|. 
T Consensus       106 Klg~l~e~e~f~~~--pn~~-a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA~-  175 (449)
T 1b89_A          106 KTNRLAELEEFING--PNNA-HIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKAN-  175 (449)
T ss_dssp             ---CHHHHTTTTTC--C-----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHHT-
T ss_pred             HhCCHHHHHHHHcC--CcHH-HHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHcC-
Confidence            88999887766653  2111 2223333455577888998888743      134459999999999999999999992 


Q ss_pred             CCCCCCChHHHHHHHHHhhcccCCc
Q 021611          284 SPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       284 ~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                            +...|..+..++...|+|.
T Consensus       176 ------~~~~Wk~v~~aCv~~~ef~  194 (449)
T 1b89_A          176 ------STRTWKEVCFACVDGKEFR  194 (449)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHH
T ss_pred             ------CchhHHHHHHHHHHcCcHH
Confidence                  3567788888888888874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.78  E-value=4.8e-10  Score=84.42  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHH-HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~-a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      .+...+|...|.+++.  .+|+++. +|+.+|.++..+|++++|++.|+++++++|++..++.+        +.+.+|+.
T Consensus        13 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~   82 (99)
T 2kc7_A           13 QGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILN   82 (99)
T ss_dssp             HTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHH
Confidence            3356779999999998  9999999 99999999999999999999999999999999988755        89999999


Q ss_pred             hhhhhhccCCCCCc
Q 021611          180 QFRIDVAQNPNDTE  193 (310)
Q Consensus       180 ~f~~Al~l~P~d~~  193 (310)
                      .|++++..+|+++.
T Consensus        83 ~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           83 FYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHCCTTHHHHCCSS
T ss_pred             HHHHHhccCccccc
Confidence            99999999998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.78  E-value=1.7e-09  Score=83.90  Aligned_cols=78  Identities=9%  Similarity=0.071  Sum_probs=68.8

Q ss_pred             ccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          141 VGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       141 ~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      ++|++.|+++++++|+++.+++++|.++...|++++|+..|+++++++|+++.++...+.+....|++++|+..+.++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999998775444444455789999999988763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.69  E-value=6.1e-09  Score=79.67  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=36.4

Q ss_pred             cCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          153 LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       153 l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      .+|+++.+++++|.+++.+|++++|++.|+++++++|+++.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   42 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG   42 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            57999999999999999999999999999999999998765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.1e-08  Score=96.19  Aligned_cols=185  Identities=8%  Similarity=-0.017  Sum_probs=123.9

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchh-----------------hHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-----------------AYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-----------------~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      |.+.+..|..+...|+|++|++.|.++++.+|+..                 .++.++|.+|...|++++|++.+.++++
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44567788888889999999999999998887643                 3577889999999999999999999888


Q ss_pred             cCCCCCccc----eeeeehhh--hhcChHHHHHhHHHhc-------CCCh--hhHHHHHHhhcCCCChHHHHHHhc----
Q 021611          187 QNPNDTEES----IWCFLCEA--QLYGVDEARNRFLEVG-------RDPR--PVMREAYNMFKGGGDPEKLVAAFS----  247 (310)
Q Consensus       187 l~P~d~~~~----~~~~l~~a--~l~~~~eA~~~l~~~~-------~d~~--~~~~~a~~l~~~~~~~e~al~~~~----  247 (310)
                      +.+....+.    ....++..  ..|++++|...+.+..       ....  ........++...|++++|+..+.    
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            766543321    11111222  3466777777654421       1111  111223334555678877766553    


Q ss_pred             ----CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC-CC----hHHHHHHHHHhhcccCCc
Q 021611          248 ----SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ-RS----DDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       248 ----~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~-~s----~~~~~~la~~~~~~~~~~  308 (310)
                          ....+.....+..+|.+|..+|++++|...|++++.+.... ..    ..++..++.+|...|+|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~  233 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK  233 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHH
Confidence                22344556677789999999999999999999998742111 11    244556788998888874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.51  E-value=3.9e-08  Score=96.11  Aligned_cols=168  Identities=13%  Similarity=0.098  Sum_probs=101.1

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh-
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-  203 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a-  203 (310)
                      .+|...|..+...|+|++|+..|+++        ..|..+|.++.++|+|++|++.|+++     +++.  .|...+.+ 
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~--~Wk~v~~aC  187 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR--TWKEVCFAC  187 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCch--hHHHHHHHH
Confidence            58888888888888888888888877        47778888888888888888888888     2333  56665554 


Q ss_pred             -hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhh--hhccchhhHHHHH
Q 021611          204 -QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFY--ESQKKADAAKLHI  278 (310)
Q Consensus       204 -~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~--~~~G~~d~A~~~~  278 (310)
                       ..|+++.|..+...+...|.... .+..++...|..+++++.++.+  .++.....+.-+|.+|  ...|++.++++.|
T Consensus       188 v~~~ef~lA~~~~l~L~~~ad~l~-~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          188 VDGKEFRLAQMCGLHIVVHADELE-ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             HHTTCHHHHHHTTTTTTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHhCHhhHH-HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             67788888777666554444332 3444566677888887777633  2322333333355544  5567777788877


Q ss_pred             HHhhcCCCCC---CChHHHHHHHHHhhcccCCc
Q 021611          279 LAACESPYGQ---RSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       279 ~kAl~~~~~~---~s~~~~~~la~~~~~~~~~~  308 (310)
                      ...+.++--.   .....|..+..+|...+.|.
T Consensus       267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            7776643200   23467778888887777763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.50  E-value=4.1e-08  Score=91.75  Aligned_cols=172  Identities=8%  Similarity=-0.123  Sum_probs=124.4

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCc--chhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP--RQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P--~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      +...+++.+.  ..+.++.+++.+|.++...|++++|+..+.++|..+|  ++..++...+.++..+||.+.|.+.+++.
T Consensus        85 a~~~l~~l~~--~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLK--DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTT--TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5666776665  4445566778999999999999999999999999997  88999999999999999999999999999


Q ss_pred             hccCCC-----CCccceeeeehhh----hhc--ChHHHHHhHHHhcCCChh--hHHHHHHhhcCCCChHHHHHHhcC--C
Q 021611          185 VAQNPN-----DTEESIWCFLCEA----QLY--GVDEARNRFLEVGRDPRP--VMREAYNMFKGGGDPEKLVAAFSS--G  249 (310)
Q Consensus       185 l~l~P~-----d~~~~~~~~l~~a----~l~--~~~eA~~~l~~~~~d~~~--~~~~a~~l~~~~~~~e~al~~~~~--~  249 (310)
                      .+.+|+     |..   ...++.+    ..|  ++.+|...+.++......  ....++......|++++|.+.+..  .
T Consensus       163 ~~~~~d~~~~~d~~---l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          163 TNAIEDTVSGDNEM---ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHHSCHHHHHHHHH---HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             HhcCccccccchHH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999993     331   2222222    224  688998888886554321  111233345556888888777641  1


Q ss_pred             C----------CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          250 R----------ENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       250 ~----------~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      .          +++...+..++..+...+|+  +|.++++++.+..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            1          24455555566667777786  8899999999843

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.45  E-value=7.8e-09  Score=81.98  Aligned_cols=113  Identities=12%  Similarity=0.027  Sum_probs=84.9

Q ss_pred             cccchhhhhhhhcCCCCchh------HHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhh
Q 021611          103 FIPSVSGIWDALTGGNNNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYY  170 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~  170 (310)
                      ...++...+.+++.  +.|.      ...++..+|.++..+|++++|+..|++++++.|..      ..++.++|.++..
T Consensus        24 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           24 NFRDAVIAHEQRLL--IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             CHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            45567777777765  4333      23699999999999999999999999999987653      6688899999999


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHH
Q 021611          171 LDRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLE  217 (310)
Q Consensus       171 lg~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~  217 (310)
                      .|++++|++.+++++++.+....    +..+..++.  ...|++++|...+.+
T Consensus       102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A          102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999987433211    112222332  256778888777665

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.42  E-value=1.9e-08  Score=73.50  Aligned_cols=68  Identities=18%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg  172 (310)
                      ...+|...+.+++.  ++|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|
T Consensus        24 ~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           24 DYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            56678899999998  899999999999999999999999999999999999999999999999887764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.41  E-value=4.6e-07  Score=98.63  Aligned_cols=148  Identities=12%  Similarity=0.030  Sum_probs=103.7

Q ss_pred             eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhH
Q 021611          136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF  215 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l  215 (310)
                      ..|++++|++.++++     +.+.+|+++|.++...|++++|++.|.+|     +|+..+.....+..++|++++|++.+
T Consensus      1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            556677777766655     55789999999999999999999999887     56654443333444899999999998


Q ss_pred             HHhcC---CChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChH
Q 021611          216 LEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDD  292 (310)
Q Consensus       216 ~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~  292 (310)
                      ..+..   ++......++.+-+ .+++++....+. ..+   ...+...|.++...|++++|..+|.+|          .
T Consensus      1158 ~mArk~~~e~~Idt~LafaYAK-l~rleele~fI~-~~n---~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ 1222 (1630)
T 1xi4_A         1158 QMARKKARESYVETELIFALAK-TNRLAELEEFIN-GPN---NAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 1222 (1630)
T ss_pred             HHHHhhcccccccHHHHHHHHh-hcCHHHHHHHHh-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHhh----------h
Confidence            76432   21111123443333 366776444432 222   234456999999999999999999996          3


Q ss_pred             HHHHHHHHhhcccCCc
Q 021611          293 YMAALAKVHSLCRNWS  308 (310)
Q Consensus       293 ~~~~la~~~~~~~~~~  308 (310)
                      .+..++..++.+|++.
T Consensus      1223 ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred             HHHHHHHHHHHhCCHH
Confidence            5688899998888753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.33  E-value=9e-08  Score=74.26  Aligned_cols=70  Identities=10%  Similarity=0.086  Sum_probs=64.2

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccC-------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +...+.+|..++..|+|..|+.+|++|++..       +..+..+.++|.+++++|++++|+..++++++++|+++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            5678999999999999999999999999974       345778999999999999999999999999999999865

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.32  E-value=7.2e-08  Score=81.08  Aligned_cols=86  Identities=13%  Similarity=0.236  Sum_probs=76.8

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheecc---ccccchhhhhhccccC-c-chhhHHHhhccchhhhhhhhhhhhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELD-P-RQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g---~~~eAl~~f~kAl~l~-P-~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .....|...+.  .+|.+.++.++.|+++...+   +.++++..++.+++.+ | +..+++|++|.+++++|+|++|++.
T Consensus        16 ~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           16 KFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            35566666665  67788999999999999988   7779999999999999 8 5689999999999999999999999


Q ss_pred             hhhhhccCCCCCc
Q 021611          181 FRIDVAQNPNDTE  193 (310)
Q Consensus       181 f~~Al~l~P~d~~  193 (310)
                      ++++++++|++..
T Consensus        94 ~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           94 VRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHCTTCHH
T ss_pred             HHHHHhcCCCCHH
Confidence            9999999998865

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.26  E-value=7.3e-07  Score=91.55  Aligned_cols=198  Identities=8%  Similarity=-0.006  Sum_probs=139.1

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccch-hhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSV-AEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl-~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      ...|.+++.  ..|.++..|+..+..+...|+.++|. +.|++|+...|.....|...+......|++++|.+.|++++.
T Consensus       329 ~~~Ye~aL~--~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          329 TYVYMQAAQ--HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHH--HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356778887  89999999999999999999999998 999999999999888888999999999999999999999997


Q ss_pred             c-----------CCCC---------Cccceeeeehhh--hhcChHHHHHhHHHhcCC-C---hhhHH-HHHHhhcCCCCh
Q 021611          187 Q-----------NPND---------TEESIWCFLCEA--QLYGVDEARNRFLEVGRD-P---RPVMR-EAYNMFKGGGDP  239 (310)
Q Consensus       187 l-----------~P~d---------~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d-~---~~~~~-~a~~l~~~~~~~  239 (310)
                      .           .|.+         ....+|...+..  +.++.+.|+..+.++... +   ...+. .+..-+..+++.
T Consensus       407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence            5           2421         112356655544  578899999988876433 2   12221 122223334556


Q ss_pred             HHHHHHhcCCC--CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC-CCChHHHHHHHHHhhcccCC
Q 021611          240 EKLVAAFSSGR--ENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG-QRSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       240 e~al~~~~~~~--~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~-~~s~~~~~~la~~~~~~~~~  307 (310)
                      +.|.+.+..+.  -++....+...+......|+.+.|+..|++|+..... ..+.+.+......+..+|+-
T Consensus       487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~  557 (679)
T 4e6h_A          487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL  557 (679)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence            76666554321  1222222222334556789999999999999994321 13345555668888888864

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.24  E-value=1.2e-06  Score=81.89  Aligned_cols=163  Identities=9%  Similarity=0.021  Sum_probs=111.2

Q ss_pred             chhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC--CCCccceeeeehhhhhcChHHHHHhHHHhcC
Q 021611          143 SVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP--NDTEESIWCFLCEAQLYGVDEARNRFLEVGR  220 (310)
Q Consensus       143 Al~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P--~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~  220 (310)
                      |+..|++.++..+....+++..|.++...|++++|++.+.+.+..+|  ++.++.+.......++|+.++|.+.+.++..
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            89999999988766667778999999999999999999999999987  5566544444444578999999998865322


Q ss_pred             -CC-------hhhH--HHHH-HhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC-
Q 021611          221 -DP-------RPVM--REAY-NMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPY-  286 (310)
Q Consensus       221 -d~-------~~~~--~~a~-~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~-  286 (310)
                       ++       ....  .+++ .+..++++++++...+...  ..|+.......++ ++..+|++++|...+++.++..+ 
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence             22       1111  2232 2445566788887776521  2222111122233 89999999999999998776310 


Q ss_pred             -------CCCChHHHHHHHHHhhcccC
Q 021611          287 -------GQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       287 -------~~~s~~~~~~la~~~~~~~~  306 (310)
                             .+.+++.+.++..+-.-.|+
T Consensus       244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          244 VEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             TTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCh
Confidence                   13467888787666555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.12  E-value=8.4e-07  Score=83.12  Aligned_cols=179  Identities=11%  Similarity=0.017  Sum_probs=123.6

Q ss_pred             cccchhhhhhhhcCCCCch-----------------hHHHHHHHhhhhheeccccccchhhhhhccccCcchhh------
Q 021611          103 FIPSVSGIWDALTGGNNNS-----------------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA------  159 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P-----------------~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~------  159 (310)
                      .+.+|.+.|.+++.  .+|                 ....++.++|.+|..+|++++|++.|.+++++.+....      
T Consensus        19 ~y~eA~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           19 QYNEAEQVYLSLLD--KDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             CHHHHHHHHHHHHH--SCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHh--hCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            45567777777654  333                 23357899999999999999999999999998776433      


Q ss_pred             HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc----cceeeeehhh--hhcChHHHHHhHHHhcC-----CChhhH--
Q 021611          160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCEA--QLYGVDEARNRFLEVGR-----DPRPVM--  226 (310)
Q Consensus       160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~a--~l~~~~eA~~~l~~~~~-----d~~~~~--  226 (310)
                      ....+|.++...|++++|++.+++++...+....    +..+..++..  ..|++++|...+.++..     +..+..  
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~  176 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD  176 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence            3456899999999999999999999886543321    1222334433  57899999998766321     222211  


Q ss_pred             --HHHHHhhcCCCChHHHHHHhcC-------CCCcc--hhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          227 --REAYNMFKGGGDPEKLVAAFSS-------GRENE--YFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       227 --~~a~~l~~~~~~~e~al~~~~~-------~~~~d--~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                        .....++...+++++|...+..       ...+.  ....+...|.++...|++++|..+|.++++
T Consensus       177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              1222345557888887666531       11222  233455689999999999999999999987

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.05  E-value=3e-06  Score=83.76  Aligned_cols=134  Identities=10%  Similarity=-0.055  Sum_probs=95.4

Q ss_pred             HHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc-----CCCCCcc
Q 021611          128 IRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ-----NPNDTEE  194 (310)
Q Consensus       128 ~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l-----~P~d~~~  194 (310)
                      +..+..+..+|+|++|+..+++++++        +|+-...+.++|.+|..+|+|++|+..+++++++     -|+++..
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34455677899999999999999987        3555778899999999999999999999999975     5666642


Q ss_pred             -ceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC-CCcchhHhhhhhhhhhhhccc
Q 021611          195 -SIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-RENEYFYASLYAGLFYESQKK  270 (310)
Q Consensus       195 -~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~  270 (310)
                       ..+.+++..  .+|++++|...+.++..           .+.          . ..+ ..|......-.++.++..+|+
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~-----------i~~----------~-~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYA-----------ILL----------V-THGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH----------H-HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHH----------H-HhCCCChHHHHHHHHHHHHHHHHHH
Confidence             222334333  56788888777665211           000          0 011 122333334468889999999


Q ss_pred             hhhHHHHHHHhhc
Q 021611          271 ADAAKLHILAACE  283 (310)
Q Consensus       271 ~d~A~~~~~kAl~  283 (310)
                      +++|...|+++.+
T Consensus       451 ~~~ae~~~~~~~~  463 (490)
T 3n71_A          451 FRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.01  E-value=1.8e-06  Score=70.02  Aligned_cols=121  Identities=18%  Similarity=0.062  Sum_probs=71.4

Q ss_pred             cccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          138 GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       138 g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      +++++|+..|.++.+..+.  .+.  +|.++...+.+++|++.|+++.+..  ++.+  ...++..              
T Consensus         9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a--~~~Lg~~--------------   66 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACELN--SGNG--CRFLGDF--------------   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT--CHHH--HHHHHHH--------------
T ss_pred             cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC--CHHH--HHHHHHH--------------
Confidence            5667777777777776533  333  7777777777777777777777662  2332  2222211              


Q ss_pred             hcCCChhhHHHHHHhhcC---CCChHHHHHHhcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCC
Q 021611          218 VGRDPRPVMREAYNMFKG---GGDPEKLVAAFSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRS  290 (310)
Q Consensus       218 ~~~d~~~~~~~a~~l~~~---~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s  290 (310)
                                    ++.+   ..++++++..+..........+.+.+|.+|..    .+++++|+.+|++|++..    +
T Consensus        67 --------------y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~  128 (138)
T 1klx_A           67 --------------YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG----S  128 (138)
T ss_dssp             --------------HHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred             --------------HHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC----C
Confidence                          0111   22333333333322112345567789999888    899999999999999932    3


Q ss_pred             hHHHHHHH
Q 021611          291 DDYMAALA  298 (310)
Q Consensus       291 ~~~~~~la  298 (310)
                      .+...+|+
T Consensus       129 ~~A~~~l~  136 (138)
T 1klx_A          129 EDACGILN  136 (138)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            45555554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.99  E-value=1.2e-06  Score=86.51  Aligned_cols=115  Identities=9%  Similarity=0.002  Sum_probs=85.4

Q ss_pred             cccchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhccccC--------cchhhHHHhhccch
Q 021611          103 FIPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSL  168 (310)
Q Consensus       103 ~~~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~  168 (310)
                      -+.+|..++.+++.      |.-+|+-+..+.++|.+|..+|+|++|+..+++++++.        |+-...++++|.+|
T Consensus       324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  403 (490)
T 3n71_A          324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN  403 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            34456666655532      35688888999999999999999999999999999873        55677899999999


Q ss_pred             hhhhhhhhhhhhhhhhhcc-----CCCCCccc-eeeeehhh--hhcChHHHHHhHHH
Q 021611          169 YYLDRFEEGAEQFRIDVAQ-----NPNDTEES-IWCFLCEA--QLYGVDEARNRFLE  217 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l-----~P~d~~~~-~~~~l~~a--~l~~~~eA~~~l~~  217 (310)
                      ..+|+|++|+..|++|+++     -|+++... ....++.+  .++.+++|...+.+
T Consensus       404 ~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~  460 (490)
T 3n71_A          404 WHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK  460 (490)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999884     67776421 11122222  35556666555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.92  E-value=1.9e-06  Score=79.71  Aligned_cols=87  Identities=9%  Similarity=-0.013  Sum_probs=78.3

Q ss_pred             cccchhhhhhhhcCCCCchh--HHHHHHHhhhhheec-----cccccchhhhhhccccCcch-hhHHHhhccchhhh-hh
Q 021611          103 FIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYL-DR  173 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~--~~~a~~~rG~~~~~~-----g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~l-g~  173 (310)
                      ..+.+.....+++.  ++|+  +..+|..+|..|...     |+.+.|.++|+|||+++|+. ..+++..|..+... |+
T Consensus       178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            44567788889998  9998  778999999999995     99999999999999999975 99999999999885 99


Q ss_pred             hhhhhhhhhhhhccCCCC
Q 021611          174 FEEGAEQFRIDVAQNPND  191 (310)
Q Consensus       174 ~~eA~~~f~~Al~l~P~d  191 (310)
                      +++|...+++++..+|..
T Consensus       256 ~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          256 RAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHcCCCCC
Confidence            999999999999999975

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.87  E-value=4.2e-06  Score=77.39  Aligned_cols=106  Identities=10%  Similarity=-0.049  Sum_probs=81.2

Q ss_pred             hhhcCCCCchhHHHHHHHhhhhhee-----ccc------cccchhhhhhccccCcc--hhhHHHhhccchhhh-----hh
Q 021611          112 DALTGGNNNSREAVVAIRRGMLLFR-----QGD------VVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYL-----DR  173 (310)
Q Consensus       112 ~~ai~~~~~P~~~~a~~~rG~~~~~-----~g~------~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~l-----g~  173 (310)
                      .+++. ..+|+++++++-.|.+...     .|+      ..+|...++|||++||+  +..+|..+|.+|...     |+
T Consensus       141 ~~~l~-~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          141 HKVLS-RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             HHHHT-TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             HHHHH-HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            33443 4789999888877766533     233      35788899999999999  677999999999996     99


Q ss_pred             hhhhhhhhhhhhccCCCC-Cccceeeeehhhh-hcChHHHHHhHHHh
Q 021611          174 FEEGAEQFRIDVAQNPND-TEESIWCFLCEAQ-LYGVDEARNRFLEV  218 (310)
Q Consensus       174 ~~eA~~~f~~Al~l~P~d-~~~~~~~~l~~a~-l~~~~eA~~~l~~~  218 (310)
                      .++|.++|++|++++|+. ....+.++-.... .++.+++.+.+.++
T Consensus       220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999999999975 7654444333334 47788888887774

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.84  E-value=3.2e-06  Score=80.64  Aligned_cols=74  Identities=11%  Similarity=0.081  Sum_probs=69.1

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      ..+|.++.+|..+|.+++..|++++|+..+++|++++|+ +.+|..+|.++...|++++|++.|++|+.++|.++
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            378999999999999999999999999999999999985 67888999999999999999999999999999764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.76  E-value=6.7e-06  Score=80.03  Aligned_cols=89  Identities=11%  Similarity=0.039  Sum_probs=73.9

Q ss_pred             cchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhh
Q 021611          105 PSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYY  170 (310)
Q Consensus       105 ~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~  170 (310)
                      .+|..++.+++.      |.-+|+-+..+.++|.+|..+|+|++|+..+++++++        +|+-...++++|.+|..
T Consensus       315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~  394 (433)
T 3qww_A          315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG  394 (433)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence            455666665532      2567788899999999999999999999999999987        46667789999999999


Q ss_pred             hhhhhhhhhhhhhhhcc-----CCCCCc
Q 021611          171 LDRFEEGAEQFRIDVAQ-----NPNDTE  193 (310)
Q Consensus       171 lg~~~eA~~~f~~Al~l-----~P~d~~  193 (310)
                      +|+|++|+..|++|+++     -|++|.
T Consensus       395 qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          395 LENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            99999999999999885     455543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.67  E-value=2.5e-05  Score=75.99  Aligned_cols=33  Identities=15%  Similarity=0.029  Sum_probs=28.0

Q ss_pred             cchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          252 NEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       252 ~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      |+....+.++|.+|..+|++++|+.+|++|+++
T Consensus       379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            344445667999999999999999999999985

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.66  E-value=9.3e-06  Score=65.76  Aligned_cols=105  Identities=12%  Similarity=-0.017  Sum_probs=77.9

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFEEGA  178 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~eA~  178 (310)
                      ....|...|.++..  .+  ++.+.  +|.+|...+..++|+.+|++|.+.  +++.+.+++|.++..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~--~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACE--LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHH--TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHc--CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            45567788887765  33  33444  999999999999999999999997  678999999999998    89999999


Q ss_pred             hhhhhhhccCCCCCccceeeeehhhh----hcChHHHHHhHHH
Q 021611          179 EQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLE  217 (310)
Q Consensus       179 ~~f~~Al~l~P~d~~~~~~~~l~~a~----l~~~~eA~~~l~~  217 (310)
                      +.|+++.+.  +++.+....+.....    .+++++|...+.+
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~  122 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK  122 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence            999999987  345533322222222    3556677666665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.66  E-value=8.4e-06  Score=77.77  Aligned_cols=39  Identities=5%  Similarity=-0.021  Sum_probs=21.4

Q ss_pred             cccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611          151 IELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP  189 (310)
Q Consensus       151 l~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P  189 (310)
                      +.++|.++.++.-+|.++...|++++|+..+++|+++||
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~  308 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM  308 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            344455555555555555555555555555555555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.65  E-value=1.1e-05  Score=78.17  Aligned_cols=84  Identities=12%  Similarity=0.038  Sum_probs=59.4

Q ss_pred             ccchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchh
Q 021611          104 IPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLY  169 (310)
Q Consensus       104 ~~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~  169 (310)
                      +.+|..++.+++.      |..+|.-...+.++|.+|..+|+|++|+..+.+++++        +|+-...++++|.+|.
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~  382 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL  382 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence            3445555555432      2456666677888888888888888888888888765        3445566778888888


Q ss_pred             hhhhhhhhhhhhhhhhcc
Q 021611          170 YLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       170 ~lg~~~eA~~~f~~Al~l  187 (310)
                      .+|++++|+..|++|+++
T Consensus       383 ~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          383 HQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHH
Confidence            888888888888888764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.54  E-value=2.1e-05  Score=76.26  Aligned_cols=96  Identities=15%  Similarity=-0.081  Sum_probs=65.3

Q ss_pred             heeccccccchhhhhhccccC--------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611          134 LFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  205 (310)
Q Consensus       134 ~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l  205 (310)
                      +..+|+|++|++.+++++++.        |.-...+.++|.+|..+|+|++|+..+++++++--.               
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~---------------  361 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI---------------  361 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH---------------
Confidence            445677777777777777652        333456667777777777777777777777654210               


Q ss_pred             cChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          206 YGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       206 ~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                                                .+              -...|+.....+.+|.+|..+|++++|+.+|++|+++
T Consensus       362 --------------------------~l--------------g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          362 --------------------------FF--------------PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             --------------------------HS--------------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --------------------------Hc--------------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence                                      00              0012333445567999999999999999999999985

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.44  E-value=3.9e-05  Score=58.56  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=56.4

Q ss_pred             CcchhhHHHhhccchhhhhh---hhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          154 DPRQKAYLWQRGLSLYYLDR---FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       154 ~P~~~~a~~~~G~a~~~lg~---~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +|+++..+..+|.+++..++   .++|...|+++++++|+++.+....+....+.|++++|+..+.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            68899999999999987776   799999999999999999987665555556889999999988874

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.35  E-value=4e-05  Score=62.23  Aligned_cols=86  Identities=12%  Similarity=0.187  Sum_probs=73.3

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheecccccc---chhhhhhccccC-c-chhhHHHhhccchhhhhhhhhhhhhh
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG---SVAEFDKAIELD-P-RQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~e---Al~~f~kAl~l~-P-~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      ....|.....  .++.+..+-|+.|++++...+..+   +|..++..++-+ | ..-..+|.+|+.++++|+|++|+..+
T Consensus        20 ~~~~y~~e~~--~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           20 FEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3344554444  456678999999999999888887   999999999998 7 56899999999999999999999999


Q ss_pred             hhhhccCCCCCcc
Q 021611          182 RIDVAQNPNDTEE  194 (310)
Q Consensus       182 ~~Al~l~P~d~~~  194 (310)
                      +..++++|++..+
T Consensus        98 ~~lL~~eP~n~QA  110 (126)
T 1nzn_A           98 RGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHCTTCHHH
T ss_pred             HHHHHhCCCCHHH
Confidence            9999999998763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.72  E-value=0.0015  Score=66.86  Aligned_cols=175  Identities=7%  Similarity=-0.076  Sum_probs=119.2

Q ss_pred             cchh-hhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccC-----------c-----------chhhHH
Q 021611          105 PSVS-GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----------P-----------RQKAYL  161 (310)
Q Consensus       105 ~~a~-~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-----------P-----------~~~~a~  161 (310)
                      +++. .++.+++.  ..|.+...|+..+......|++++|.+.|+++++.-           |           +....|
T Consensus       360 ~~a~r~il~rAi~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW  437 (679)
T 4e6h_A          360 STVITKYLKLGQQ--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY  437 (679)
T ss_dssp             TTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence            4454 77888887  889999999999999999999999999999999852           4           244578


Q ss_pred             Hhhccchhhhhhhhhhhhhhhhhhcc-CCCCCccceeeeehhh--hhcC-hHHHHHhHHHhc---CCChhhHHHHHHhhc
Q 021611          162 WQRGLSLYYLDRFEEGAEQFRIDVAQ-NPNDTEESIWCFLCEA--QLYG-VDEARNRFLEVG---RDPRPVMREAYNMFK  234 (310)
Q Consensus       162 ~~~G~a~~~lg~~~eA~~~f~~Al~l-~P~d~~~~~~~~l~~a--~l~~-~~eA~~~l~~~~---~d~~~~~~~a~~l~~  234 (310)
                      ........+.|..+.|...|.+|++. .+....  .|...+..  +.++ .+.|+..+.+..   ++....+.....+..
T Consensus       438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~  515 (679)
T 4e6h_A          438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI  515 (679)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            88888888899999999999999987 332222  33222222  3444 788888776532   333333322223444


Q ss_pred             CCCChHHHHHHhcCC--CCc---chhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          235 GGGDPEKLVAAFSSG--REN---EYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       235 ~~~~~e~al~~~~~~--~~~---d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      ..++.+.+...++..  ..+   .....+......-...|+.+.+...++++++
T Consensus       516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            457778777776522  112   1222222233445567999999999999998

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.20  E-value=0.00087  Score=51.31  Aligned_cols=62  Identities=15%  Similarity=0.056  Sum_probs=49.7

Q ss_pred             ccchhhhhhhhcCC-----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611          104 IPSVSGIWDALTGG-----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG  165 (310)
Q Consensus       104 ~~~a~~~~~~ai~~-----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G  165 (310)
                      +..|..-+.+++..     ...+..+.++..+|.+++.+|++++|+..++++++++|++..+..+++
T Consensus        21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            44455555555431     023467899999999999999999999999999999999999988887

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.93  E-value=0.0031  Score=51.49  Aligned_cols=72  Identities=11%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             HHHHHHHhhhhheecccc---ccchhhhhhccccCcc-hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          123 EAVVAIRRGMLLFRQGDV---VGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~---~eAl~~f~kAl~l~P~-~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ++.+-|+.+++++...+.   .++|..++..++-+|. .-..+|.+++.++++|+|++|....+..++++|++..+
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            468888898888876554   4789999999999995 58899999999999999999999999999999998653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.86  E-value=0.0007  Score=56.61  Aligned_cols=80  Identities=9%  Similarity=0.067  Sum_probs=66.5

Q ss_pred             cccccchhhhhhccccCcchhhHHHhhccchhhhh---hhhhhhhhhhhhhccC-C-CCCccceeeeehhhhhcChHHHH
Q 021611          138 GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD---RFEEGAEQFRIDVAQN-P-NDTEESIWCFLCEAQLYGVDEAR  212 (310)
Q Consensus       138 g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg---~~~eA~~~f~~Al~l~-P-~d~~~~~~~~l~~a~l~~~~eA~  212 (310)
                      .....+.+.|.+.++.+|.+..+.++.|.++.+.+   +.++++..|+..++.+ | +..++.++.+++..+++++++|+
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34456778888888889989999999999999987   8889999999999998 7 34555565666667999999999


Q ss_pred             HhHHH
Q 021611          213 NRFLE  217 (310)
Q Consensus       213 ~~l~~  217 (310)
                      ..+.+
T Consensus        92 ~y~~~   96 (152)
T 1pc2_A           92 KYVRG   96 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98766

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.60  E-value=0.0081  Score=50.20  Aligned_cols=109  Identities=12%  Similarity=0.077  Sum_probs=79.0

Q ss_pred             CchhHHHHHHHhhhhheecccc------ccchhhhhhccccCcchh--------hHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          119 NNSREAVVAIRRGMLLFRQGDV------VGSVAEFDKAIELDPRQK--------AYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~------~eAl~~f~kAl~l~P~~~--------~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      ++|+|++.|...-..+-..|+.      +.-++.|++|+..-|-..        ..|...+ .+..+++.++|.+.|+.|
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence            7899999999999988888999      888899999998877421        1222333 336679999999999999


Q ss_pred             hccCCCCCccceeeeehhh--hhcChHHHHHhHHH---hcCCChhhHHHHH
Q 021611          185 VAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLE---VGRDPRPVMREAY  230 (310)
Q Consensus       185 l~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~---~~~d~~~~~~~a~  230 (310)
                      +.+..++  +.+|...+..  +.|+.+.|+..+.+   ..+.|...+..+.
T Consensus        87 ~~~hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~  135 (161)
T 4h7y_A           87 RANCKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL  135 (161)
T ss_dssp             HHHCTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred             HHHhHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            9986666  5566665554  67899999998776   2344444443343

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.53  E-value=0.005  Score=50.84  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=64.1

Q ss_pred             hhHHHHHHHhhhhheeccccc---cchhhhhhccccCcc-hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          121 SREAVVAIRRGMLLFRQGDVV---GSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~---eAl~~f~kAl~l~P~-~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +-++.+-|+.+++++...+.+   ++|..++..++-+|. .-..+|.+++.++++|+|++|....+..++++|++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            456788899999998876554   799999999998884 5789999999999999999999999999999998865

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.27  E-value=0.016  Score=56.73  Aligned_cols=55  Identities=11%  Similarity=-0.020  Sum_probs=47.8

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR  164 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~  164 (310)
                      +..+|.+++.  ..|..+..|+..+..+...|+.++|...|++|++. |.+...+...
T Consensus       198 v~~~ye~al~--~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y  252 (493)
T 2uy1_A          198 MHFIHNYILD--SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY  252 (493)
T ss_dssp             HHHHHHHHHH--HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred             HHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            4567888887  78999999999999999999999999999999999 9876655543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.28  E-value=0.014  Score=57.01  Aligned_cols=157  Identities=4%  Similarity=-0.134  Sum_probs=90.9

Q ss_pred             cchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc--
Q 021611          142 GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG--  219 (310)
Q Consensus       142 eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~--  219 (310)
                      .....|++++...|..+..|+..+..+...|+.++|.+.|++|+.. |++..  +|...+..  ...++....+.+.-  
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~--l~~~y~~~--~e~~~~~~~l~~~~~~  271 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF--LSLYYGLV--MDEEAVYGDLKRKYSM  271 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH--HHHHHHHH--TTCTHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH--HHHHHHhh--cchhHHHHHHHHHHHh
Confidence            3567999999999999999999999999999999999999999999 98753  44432222  11112222221110  


Q ss_pred             -C------CCh---hhHHHHHHhh-cCCCChHHHHHHhcCCCCcchhHhhhhh--hhhhhhcc-chhhHHHHHHHhhcCC
Q 021611          220 -R------DPR---PVMREAYNMF-KGGGDPEKLVAAFSSGRENEYFYASLYA--GLFYESQK-KADAAKLHILAACESP  285 (310)
Q Consensus       220 -~------d~~---~~~~~a~~l~-~~~~~~e~al~~~~~~~~~d~~~a~~~l--G~~~~~~G-~~d~A~~~~~kAl~~~  285 (310)
                       .      .+.   ......|.-+ ...+..+.+...+.....+. ...+.+.  +.+-...| +.+.|+..|+++++ .
T Consensus       272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~-~  349 (493)
T 2uy1_A          272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL-K  349 (493)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH-H
T ss_pred             hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHH-H
Confidence             0      001   1111222222 12234565555544221111 1123333  33333344 69999999999998 3


Q ss_pred             CCCCChHHHHHHHHHhhcccC
Q 021611          286 YGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       286 ~~~~s~~~~~~la~~~~~~~~  306 (310)
                      ++ .+++++...+..+..+|+
T Consensus       350 ~~-~~~~~~~~yid~e~~~~~  369 (493)
T 2uy1_A          350 HP-DSTLLKEEFFLFLLRIGD  369 (493)
T ss_dssp             CT-TCHHHHHHHHHHHHHHTC
T ss_pred             CC-CCHHHHHHHHHHHHHcCC
Confidence            33 456666655665555554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.83  E-value=0.2  Score=49.10  Aligned_cols=152  Identities=15%  Similarity=0.022  Sum_probs=97.9

Q ss_pred             HHHhhhhheeccccccchhhhhhcccc--CcchhhHHHhhc---------cchhhhhhhhhhhhhhhhhhcc--CCCCCc
Q 021611          127 AIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKAYLWQRG---------LSLYYLDRFEEGAEQFRIDVAQ--NPNDTE  193 (310)
Q Consensus       127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l--~P~~~~a~~~~G---------~a~~~lg~~~eA~~~f~~Al~l--~P~d~~  193 (310)
                      +...=..+.+.|+.++|++.|++..+.  .|+-. .|..+=         ......++.++|.+.|++..+.  .|+.  
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~--  105 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE--  105 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH--
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH--
Confidence            444446778999999999999997764  46532 222111         1123457789999999987764  4542  


Q ss_pred             cceeeee--hhhhhcChHHHHHhHHHhcC---CChhh-HHHHHHhhcCCCChHHHHHHhc----CCCCcchhHhhhhhhh
Q 021611          194 ESIWCFL--CEAQLYGVDEARNRFLEVGR---DPRPV-MREAYNMFKGGGDPEKLVAAFS----SGRENEYFYASLYAGL  263 (310)
Q Consensus       194 ~~~~~~l--~~a~l~~~~eA~~~l~~~~~---d~~~~-~~~a~~l~~~~~~~e~al~~~~----~~~~~d~~~a~~~lG~  263 (310)
                       ..+..+  +..+.|+.++|...+.++..   .|... +..+...+...|+.++|.+.+.    .+..|+.. .+..+-.
T Consensus       106 -~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~-ty~~Li~  183 (501)
T 4g26_A          106 -ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP-ELAALLK  183 (501)
T ss_dssp             -HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH-HHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHH
Confidence             233333  23478999999998876432   23322 2333444566788998887774    33444432 2334556


Q ss_pred             hhhhccchhhHHHHHHHhhc
Q 021611          264 FYESQKKADAAKLHILAACE  283 (310)
Q Consensus       264 ~~~~~G~~d~A~~~~~kAl~  283 (310)
                      .+...|+.++|.+.|++..+
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHH
Confidence            78889999999999999876

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.80  E-value=0.013  Score=49.55  Aligned_cols=86  Identities=12%  Similarity=0.077  Sum_probs=48.4

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCc---chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP---RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P---~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      +.+.+.+|.+++..|+|..|+..|++||++.-   +.....-..|.    ...+.+.       ..+ +.+.+..++.+.
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~----~ss~p~s-------~~~-~~e~Elkykia~  130 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN----SASTPQS-------QCL-PSEIEVKYKLAE  130 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------------------------CC-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc----cCCCccc-------ccc-cchHHHHHHHHH
Confidence            35778888888888888888888888776643   22222111110    0111110       111 223445566777


Q ss_pred             hhhhhcChHHHHHhHHHhcCC
Q 021611          201 CEAQLYGVDEARNRFLEVGRD  221 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~~d  221 (310)
                      |...++++++|+..++.+...
T Consensus       131 C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          131 CYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             HHHHTTCHHHHHHHHHTSCGG
T ss_pred             HHHHHCCHHHHHHHHhcCCch
Confidence            888888899999888887654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.72  E-value=0.016  Score=49.08  Aligned_cols=64  Identities=11%  Similarity=0.066  Sum_probs=52.8

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhh---------HHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA---------YLWQRGLSLYYLDRFEEGAEQFRIDVAQN  188 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~---------a~~~~G~a~~~lg~~~eA~~~f~~Al~l~  188 (310)
                      .+++.-...++..|.|+.|+-..+.++.+..+++.         .++..|.+++..|+|..|...|++|+.+.
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            45566667778889999999999998887655444         77899999999999999999999997753

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.56  E-value=0.082  Score=48.04  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             hheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          133 LLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       133 ~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      .+++.|+.++|++.....|+-+|.+......+-..+...|+|+.|.+.++.+.+++|+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            467789999999999999999999999999999999999999999999999999999653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.21  E-value=0.073  Score=42.88  Aligned_cols=58  Identities=7%  Similarity=0.006  Sum_probs=46.8

Q ss_pred             hhhhhhhhcCCCCc-h-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhcc
Q 021611          107 VSGIWDALTGGNNN-S-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGL  166 (310)
Q Consensus       107 a~~~~~~ai~~~~~-P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~  166 (310)
                      ...+...+..  .+ | ..-+..|.+|..+.++|+|++|...++..|+++|++.++.--+..
T Consensus        57 GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           57 GIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3455555555  34 6 677999999999999999999999999999999999888654433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.40  E-value=0.081  Score=50.14  Aligned_cols=62  Identities=15%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      .+...++.++...|++++|+....+++..+|-+..+|..+-.+++..|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45556677777888888888888888888888877888888888888888888888877643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.79  E-value=0.33  Score=48.63  Aligned_cols=45  Identities=11%  Similarity=0.040  Sum_probs=27.1

Q ss_pred             eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611          135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID  184 (310)
Q Consensus       135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A  184 (310)
                      +..|++++|.+....     .+++..|..+|......|+++.|+++|.++
T Consensus       663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            334555555544322     233466667777777777777777777765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=87.43  E-value=0.19  Score=52.00  Aligned_cols=63  Identities=10%  Similarity=0.008  Sum_probs=57.1

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      ....+...+..++..|+|+-|++.-.+|+..-|.....|+.++.+|..+|+|+.|+-.++-+=
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            345666678888889999999999999999999999999999999999999999999998883

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=85.90  E-value=0.19  Score=40.82  Aligned_cols=49  Identities=10%  Similarity=0.039  Sum_probs=42.0

Q ss_pred             Cch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccc
Q 021611          119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLS  167 (310)
Q Consensus       119 ~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a  167 (310)
                      .+| ..-+.+|.++..+.++|+|++|....++.++++|++.+|.--+..+
T Consensus        72 ~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           72 EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            456 4568999999999999999999999999999999998886554444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=85.00  E-value=0.38  Score=40.09  Aligned_cols=86  Identities=10%  Similarity=-0.023  Sum_probs=68.5

Q ss_pred             hhhhhhhhcCC------CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          107 VSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       107 a~~~~~~ai~~------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      ..+.|.+++..      .......-.|+..+.. ...++.++|-+.|+.++.+...|+..|...+....+.|+.+.|.+.
T Consensus        38 lrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI  116 (161)
T 4h7y_A           38 LIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQL  116 (161)
T ss_dssp             HHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            44556665541      1222455677777755 5669999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCc
Q 021611          181 FRIDVAQNPNDTE  193 (310)
Q Consensus       181 f~~Al~l~P~d~~  193 (310)
                      +.+|+.+.|...+
T Consensus       117 Lg~AiG~~~k~~~  129 (161)
T 4h7y_A          117 LQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHHHTTCBCHH
T ss_pred             HHHHhccCCCcHH
Confidence            9999999997654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=84.96  E-value=0.51  Score=46.13  Aligned_cols=111  Identities=9%  Similarity=0.003  Sum_probs=81.5

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhcccc--CcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      ....|..+|++.....+.|+ ...|..+-..+.+.|+.++|++.|++..+.  .|+ ...|..+=.++.+.|+.++|.+.
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHH
Confidence            34567788887654335665 467888888999999999999999987654  565 44566677788899999999999


Q ss_pred             hhhhhcc--CCCCCccceeeee--hhhhhcChHHHHHhHHHh
Q 021611          181 FRIDVAQ--NPNDTEESIWCFL--CEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       181 f~~Al~l--~P~d~~~~~~~~l--~~a~l~~~~eA~~~l~~~  218 (310)
                      |++..+.  .|+..   .+..+  +..+.|+.++|.+.+.+.
T Consensus       163 ~~~M~~~G~~Pd~~---ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          163 DAHMVESEVVPEEP---ELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHHHHTTCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCHH---HHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            9998774  45432   33333  234789999999987764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=83.18  E-value=1.1  Score=37.95  Aligned_cols=45  Identities=7%  Similarity=-0.054  Sum_probs=28.0

Q ss_pred             eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      ..|+++.|.+..++.     ++..-|..+|..-...|+++-|..+|.++-
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            346666666655433     345566667777777777777777766653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.78  E-value=1.3  Score=37.95  Aligned_cols=109  Identities=14%  Similarity=0.137  Sum_probs=65.2

Q ss_pred             CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-----CCChhhHHH
Q 021611          154 DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-----RDPRPVMRE  228 (310)
Q Consensus       154 ~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-----~d~~~~~~~  228 (310)
                      -|..++.-.-++++++..|+|..++-.+.   .+|.  ....++..+|.-+++++..|+..+.++.     .||... ..
T Consensus        29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lNT--~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d-~~  102 (242)
T 3kae_A           29 LPCKPEYRMLMSIVLYLNGEYTRALFHLH---KLNT--CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD-AR  102 (242)
T ss_dssp             C----CTHHHHHHHHHHTTCHHHHHHHHH---TCCB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC-HH
T ss_pred             ccCChHHHhhhhhhhhhcchHhHHHHHHH---hcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-cc
Confidence            35555667778888888888887776643   2332  3344556677778888888888776643     222211 11


Q ss_pred             HHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          229 AYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       229 a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      .-.+|.               .+.|.......+|.+..+.|+.++|+.+|...-.
T Consensus       103 ~~~ffv---------------d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A          103 IQEMFV---------------DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHTTSC---------------CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cceeee---------------ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            111222               1233344444688999999999999999987443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=82.72  E-value=0.35  Score=47.59  Aligned_cols=68  Identities=9%  Similarity=-0.059  Sum_probs=60.6

Q ss_pred             HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      ..+..+|.+......++.|...|.+|+.+.|+...+|+++|.+....|+.-+|+-.|-+++....-++
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~  220 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence            35677888888888899999999999999999999999999999999999999999999998765343

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.53  E-value=0.38  Score=39.52  Aligned_cols=47  Identities=11%  Similarity=0.028  Sum_probs=40.0

Q ss_pred             Cch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611          119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG  165 (310)
Q Consensus       119 ~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G  165 (310)
                      .+| ..-+..|.++..+.++|+|++|....+..++++|++.++.--+.
T Consensus        71 ~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           71 EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            344 45688999999999999999999999999999999988765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 14/190 (7%)

Query: 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177
            N  R+       G+   ++GD+  +V  F+ A++ DP+        G +    ++    
Sbjct: 13  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 72

Query: 178 AEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGG 237
               R  +   P++    +   +                      R       +  +   
Sbjct: 73  ISALRRCLELKPDNQTALMALAVSFTNES--------------LQRQACEILRDWLRYTP 118

Query: 238 DPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAAL 297
               LV     G        S        S       K   LAA          D    L
Sbjct: 119 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178

Query: 298 AKVHSLCRNW 307
             + +L   +
Sbjct: 179 GVLFNLSGEY 188

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 10/66 (15%), Positives = 20/66 (30%)

Query: 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187
           +      ++ GD   +     +    +P     L       +   R +  A    + + Q
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 188 NPNDTE 193
           NP   E
Sbjct: 63  NPLLAE 68

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 11/64 (17%), Positives = 25/64 (39%)

Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
              +   QG++  +V  + KA+E+ P   A        L    + +E    ++  +  +P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 190 NDTE 193
              +
Sbjct: 371 TFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 15/99 (15%), Positives = 34/99 (34%)

Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
           +   AVV      + + QG +  ++  + +AIEL P           +L       E  +
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

Query: 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218
            +   +   P   +        + +   ++EA   + + 
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 20/159 (12%), Positives = 50/159 (31%), Gaps = 4/159 (2%)

Query: 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180
           S  A     +G  LF       + A + +AI  +P    Y   R L    + + E+    
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF---LEVGRD-PRPVMREAYNMFKGG 236
            R  +  +    +   +   C+ ++   DEA         + ++       +  +  +  
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 237 GDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAK 275
                         +    ++ L   +  E +++ +  +
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQ 159

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 10/60 (16%), Positives = 19/60 (31%)

Query: 134 LFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193
              +G +  ++    +AI+  P+  +        L     FE   EQ    +   P    
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 16/161 (9%)

Query: 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182
           EA+     G+L   + D  G++  F    +   R     +  G     L    E  + F 
Sbjct: 4   EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSR---ICFNIGCMYTILKNMTEAEKAFT 60

Query: 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKL 242
             + ++ +         +   Q    D A              ++EA    +G    +  
Sbjct: 61  RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD-----------LKEALIQLRGNQLIDYK 109

Query: 243 VAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283
           +              ++     Y  +++   A+  +  A  
Sbjct: 110 ILGLQFKLFACEVLYNI--AFMYAKKEEWKKAEEQLALATS 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.81
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.76
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.74
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.7
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.67
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.64
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.47
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.45
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.43
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.42
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.4
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.39
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.36
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.28
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.23
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.2
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.2
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.19
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.13
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.09
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.05
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.02
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.89
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.85
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.73
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.7
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.66
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.44
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.38
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.21
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.9
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.37
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.54
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.37
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	84.43

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.9e-20  Score=166.47  Aligned_cols=200  Identities=14%  Similarity=0.058  Sum_probs=168.0

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      ....|...+.+++.  ++|+++.+|..+|.++...|++++|+..|+++++++|.....+..+|.++...|++++|++.|+
T Consensus       184 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  261 (388)
T d1w3ba_         184 EIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH--hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55668888888888  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHh
Q 021611          183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYA  257 (310)
Q Consensus       183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a  257 (310)
                      ++++++|+++.++...+.+....|++++|+..+.++   .+.....+......+...|++++|+..+.  ....|+...+
T Consensus       262 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  341 (388)
T d1w3ba_         262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999875443334444789999999988764   23333333333345566789999988886  3345667788


Q ss_pred             hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611          258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~  306 (310)
                      ++.+|.++..+|++++|+.+|++|+++.  +...+.+.+||.++..+|+
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence            8899999999999999999999999965  3567899999999999886

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.4e-19  Score=157.91  Aligned_cols=167  Identities=17%  Similarity=0.154  Sum_probs=95.0

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      .+|..+.+|+.+|.+|..+|++++|++.|++||+++|+++.+|+++|.++..+|++++|+++|+++++++|+++.++...
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666665543333


Q ss_pred             eehhhhhcChHHHHHhHHHhcC-CCh-----------------------------------hhHHHHHHhhcCCCCh---
Q 021611          199 FLCEAQLYGVDEARNRFLEVGR-DPR-----------------------------------PVMREAYNMFKGGGDP---  239 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~~~~-d~~-----------------------------------~~~~~a~~l~~~~~~~---  239 (310)
                      +.+...+|++++|+..+.++.. +|.                                   ..+.... .+.+....   
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  190 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVE-FYLGNISEQTL  190 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHH-HHTTSSCHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHH-HHHHHHHHHHH
Confidence            3333355666666665544211 111                                   0011111 11111111   


Q ss_pred             -HHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611          240 -EKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPY  286 (310)
Q Consensus       240 -e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~  286 (310)
                       +.+...+...  ..++...+++++|.++..+|++++|+.+|++|+..+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence             1112221111  1234566788999999999999999999999999553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.4e-19  Score=157.73  Aligned_cols=204  Identities=12%  Similarity=0.021  Sum_probs=159.6

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ  180 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~  180 (310)
                      .+...+|...|++++.  .+|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|++.
T Consensus        32 ~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  109 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI  109 (323)
T ss_dssp             TTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence            3467889999999998  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCccceeeeeh-------h--------hhhcChHHHHHhHHH---hcCCCh--hhHHHHHHhhcCCCChH
Q 021611          181 FRIDVAQNPNDTEESIWCFLC-------E--------AQLYGVDEARNRFLE---VGRDPR--PVMREAYNMFKGGGDPE  240 (310)
Q Consensus       181 f~~Al~l~P~d~~~~~~~~l~-------~--------a~l~~~~eA~~~l~~---~~~d~~--~~~~~a~~l~~~~~~~e  240 (310)
                      +++++.++|++..........       .        ...+.+.+|...+.+   ..++..  ..+......+...|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  189 (323)
T d1fcha_         110 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD  189 (323)
T ss_dssp             HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred             hhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHh
Confidence            999999999875432211110       0        022445666666654   333322  12222223455578899


Q ss_pred             HHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          241 KLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       241 ~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +|+..+...  ..|+...+++.+|.++..+|++++|+.+|++++++.  +...+.+.++|.++..+|++.
T Consensus       190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         190 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred             hhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHH
Confidence            988877632  345667788899999999999999999999999954  346688899999999999863

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-18  Score=158.38  Aligned_cols=199  Identities=11%  Similarity=-0.046  Sum_probs=150.4

Q ss_pred             hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc-cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~-~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      ...+++|..+++++|.  +||+++.+|++||.++..+|+ +++|+..|+++++++|++..+|+++|.++..+|++++|++
T Consensus        56 ~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~  133 (315)
T d2h6fa1          56 DERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE  133 (315)
T ss_dssp             TCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             CCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence            3367789999999999  999999999999999999875 8999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHH-HHHhhcCCC-----ChHHHHHHhcC--
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMRE-AYNMFKGGG-----DPEKLVAAFSS--  248 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~-a~~l~~~~~-----~~e~al~~~~~--  248 (310)
                      .|+++++++|++..++..++.+...++++++|+..+.++   ++.....+.. ...+...+.     ..++++..+..  
T Consensus       134 ~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al  213 (315)
T d2h6fa1         134 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI  213 (315)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHH
Confidence            999999999999875444444455889999999988763   3333333322 222222221     13455555432  


Q ss_pred             CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611          249 GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS  302 (310)
Q Consensus       249 ~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~  302 (310)
                      ...|+...+++++|.++...| .+++...+++++++.....+...+..++..+.
T Consensus       214 ~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         214 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence            234556677888998876554 68899999999886555455455556665543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=152.07  Aligned_cols=188  Identities=8%  Similarity=-0.083  Sum_probs=149.4

Q ss_pred             hcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh-hhhhhhhhhhhhccCCCCC
Q 021611          114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR-FEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       114 ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~-~~eA~~~f~~Al~l~P~d~  192 (310)
                      .|.  .+|+..+++..+|.++...+++++|++.+++||+++|++..+|++||.++..+|+ +++|++.++++++++|++.
T Consensus        35 ~I~--~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~  112 (315)
T d2h6fa1          35 QII--YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY  112 (315)
T ss_dssp             EEC--CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccc--cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh
Confidence            455  8999999999999999999999999999999999999999999999999999885 9999999999999999998


Q ss_pred             ccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhh
Q 021611          193 EESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYES  267 (310)
Q Consensus       193 ~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~  267 (310)
                      .++..++.+...+|++++|+..+.++   .|+....+.....++...+++++++..+..  ..+|....++.++|.++..
T Consensus       113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         113 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            86555555556899999999988774   333333333333345556778888877753  2456667788899988766


Q ss_pred             ccc------hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611          268 QKK------ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR  305 (310)
Q Consensus       268 ~G~------~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~  305 (310)
                      .|+      +++|+..+.+++++..  .+...+..++.++...|
T Consensus       193 ~~~~~~~~~~~~ai~~~~~al~~~P--~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         193 TTGYNDRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDRG  234 (315)
T ss_dssp             TTCSCSHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTTC
T ss_pred             ccccchhhhhHHhHHHHHHHHHhCC--CchHHHHHHHHHHHhcC
Confidence            555      6899999999999553  45677778877765443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.8e-17  Score=146.61  Aligned_cols=198  Identities=14%  Similarity=0.028  Sum_probs=159.8

Q ss_pred             hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      +...+.+.+.  .+|+++.++..+|..+...|++++|+..++++++++|++..++..+|.++...|++++|+..|+++..
T Consensus       154 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  231 (388)
T d1w3ba_         154 AKACYLKAIE--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             hHHHHHHhhc--cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence            4444555566  78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhh
Q 021611          187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYA  261 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~l  261 (310)
                      ++|.++..+...+.+..+.|++++|+..+.++   .|+....+......+...++.++|++.+..  ...+.....+..+
T Consensus       232 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  311 (388)
T d1w3ba_         232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL  311 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHH
Confidence            99988764433333444789999999988763   344333333333345556788888877752  2234456677789


Q ss_pred             hhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          262 GLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       262 G~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      |.++..+|++++|+.+|++++++.  +.+...+.++|.++..+|+|.
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~  356 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999954  356788899999999999974

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2.9e-17  Score=142.97  Aligned_cols=115  Identities=16%  Similarity=0.060  Sum_probs=66.2

Q ss_pred             hheeccccccchhhhhhcccc----CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcCh
Q 021611          133 LLFRQGDVVGSVAEFDKAIEL----DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV  208 (310)
Q Consensus       133 ~~~~~g~~~eAl~~f~kAl~l----~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~  208 (310)
                      .+...++++.|+..+++++..    +|....+++++|.++..+|++++|++.|+++++++|+++.++...+.+...+|++
T Consensus         8 ~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~   87 (259)
T d1xnfa_           8 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   87 (259)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHH
Confidence            334445555566666665543    3445667777777777777777777777777777777766444344444467777


Q ss_pred             HHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611          209 DEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFS  247 (310)
Q Consensus       209 ~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~  247 (310)
                      ++|+..+.++   .|+....+......+...|++++|+..+.
T Consensus        88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  129 (259)
T d1xnfa_          88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL  129 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence            7777766553   33322222222223333566666655553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.3e-17  Score=144.82  Aligned_cols=188  Identities=12%  Similarity=0.025  Sum_probs=137.5

Q ss_pred             Cch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611          119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW  197 (310)
Q Consensus       119 ~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~  197 (310)
                      .|| .+...++.+|..++..|++++|+..|+++|+.+|+++.+|+.+|.++...|++++|+..|+++++++|+++..+..
T Consensus        13 ~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   92 (323)
T d1fcha_          13 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA   92 (323)
T ss_dssp             SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccc
Confidence            344 2445678999999999999999999999999999999999999999999999999999999999999999875444


Q ss_pred             eeehhhhhcChHHHHHhHHHh---cCCChhhH---HHHH------Hhhc------CCCChHHHHHHhc----CCCCcchh
Q 021611          198 CFLCEAQLYGVDEARNRFLEV---GRDPRPVM---REAY------NMFK------GGGDPEKLVAAFS----SGRENEYF  255 (310)
Q Consensus       198 ~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~---~~a~------~l~~------~~~~~e~al~~~~----~~~~~d~~  255 (310)
                      .+.+....|++++|...+.++   .++.....   ....      ....      ..+...++...+.    ..+.....
T Consensus        93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~  172 (323)
T d1fcha_          93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP  172 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred             ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence            444455789999999887663   22211100   0000      0000      0011233333332    22222234


Q ss_pred             HhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611          256 YASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      ..+..+|.++..+|++++|+.+|++++...  +...+.+..+|.++...|++.
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~  223 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSE  223 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccch
Confidence            566779999999999999999999999843  346788899999999999874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-15  Score=118.69  Aligned_cols=67  Identities=16%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611          126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT  192 (310)
Q Consensus       126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~  192 (310)
                      -+..+|..++..|++++|+..|+++|+++|+++.+|.++|.++..+|++++|+..|+++++++|+++
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   71 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG   71 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchh
Confidence            3456777888888888888888888888888888888888888888888888888888888877654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.5e-16  Score=123.36  Aligned_cols=90  Identities=17%  Similarity=0.238  Sum_probs=86.7

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +-+.+|...|+++|.  .+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|
T Consensus        17 g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~   94 (117)
T d1elwa_          17 GNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTY   94 (117)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHH
Confidence            356789999999998  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCc
Q 021611          182 RIDVAQNPNDTE  193 (310)
Q Consensus       182 ~~Al~l~P~d~~  193 (310)
                      +++++++|+++.
T Consensus        95 ~~a~~~~p~~~~  106 (117)
T d1elwa_          95 EEGLKHEANNPQ  106 (117)
T ss_dssp             HHHHTTCTTCHH
T ss_pred             HHHHHhCCCCHH
Confidence            999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.6e-15  Score=124.72  Aligned_cols=118  Identities=11%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611          121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL  200 (310)
Q Consensus       121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l  200 (310)
                      |.++.+|+++|.++..+|++++|+++|++||+++|+++.+|+++|.++..+|+|++|+++|+++++..|.+... .+.  
T Consensus        33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~-~~~--  109 (192)
T d1hh8a_          33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI-DYK--  109 (192)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE-ECG--
T ss_pred             CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchH-HHH--
Confidence            34556677777777777777777777777777777777777777777777777777777777777666654321 000  


Q ss_pred             hhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHH
Q 021611          201 CEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILA  280 (310)
Q Consensus       201 ~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~k  280 (310)
                         +++                                         ..........++.+|.++..+|++++|++.|.+
T Consensus       110 ---~~~-----------------------------------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_         110 ---ILG-----------------------------------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             ---GGT-----------------------------------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---Hhh-----------------------------------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               000                                         001112234566899999999999999999999


Q ss_pred             hhcCC
Q 021611          281 ACESP  285 (310)
Q Consensus       281 Al~~~  285 (310)
                      |+++.
T Consensus       146 A~~~~  150 (192)
T d1hh8a_         146 ATSMK  150 (192)
T ss_dssp             HHTTC
T ss_pred             HHhcC
Confidence            99854

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.6e-15  Score=127.12  Aligned_cols=92  Identities=13%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE  179 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~  179 (310)
                      +.+.+.+|...|.+++.  ++|+++.+|.++|.+|..+|++++|+.+|++||+++|+++.+|+++|.++..+|+|++|+.
T Consensus        16 ~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~   93 (201)
T d2c2la1          16 VGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA   93 (201)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            44467789999999998  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCc
Q 021611          180 QFRIDVAQNPNDTE  193 (310)
Q Consensus       180 ~f~~Al~l~P~d~~  193 (310)
                      .|+++++++|++..
T Consensus        94 ~~~~al~l~p~~~~  107 (201)
T d2c2la1          94 NLQRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCcccHH
Confidence            99999999987664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.7e-15  Score=123.52  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR  182 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~  182 (310)
                      .+.+|...|.+++.  ++|+++.+|+++|.+++.+|++++|+.+|+++|+++|+++.+|+++|.++..+|++++|+++|+
T Consensus        25 ~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~  102 (159)
T d1a17a_          25 DYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE  102 (159)
T ss_dssp             CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            46667888888887  8888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhhccCCCCCcc
Q 021611          183 IDVAQNPNDTEE  194 (310)
Q Consensus       183 ~Al~l~P~d~~~  194 (310)
                      ++++++|+++..
T Consensus       103 ~a~~~~p~~~~~  114 (159)
T d1a17a_         103 TVVKVKPHDKDA  114 (159)
T ss_dssp             HHHHHSTTCHHH
T ss_pred             HHHHcCCCCHHH
Confidence            888888877653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1e-14  Score=122.11  Aligned_cols=96  Identities=18%  Similarity=0.224  Sum_probs=87.1

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  202 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~  202 (310)
                      ++..+...|..++..|+|++|+..|++||+++|+++.+|.++|.+|..+|+|++|+.+|++|++++|+++.++...+.+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999988655555555


Q ss_pred             hhhcChHHHHHhHHHh
Q 021611          203 AQLYGVDEARNRFLEV  218 (310)
Q Consensus       203 a~l~~~~eA~~~l~~~  218 (310)
                      ..+|++++|+..+.++
T Consensus        83 ~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          83 LEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH
Confidence            5899999999988763

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.3e-15  Score=135.97  Aligned_cols=198  Identities=8%  Similarity=-0.071  Sum_probs=140.4

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc--cccchhhhhhccccCcchhhHH-Hhhccchhhhhhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD--VVGSVAEFDKAIELDPRQKAYL-WQRGLSLYYLDRFEE  176 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~--~~eAl~~f~kAl~l~P~~~~a~-~~~G~a~~~lg~~~e  176 (310)
                      ..+...++...+++++.  .+|+++.+|+++|.++...|+  +++|+..++++++++|++..++ ...|.++...|++++
T Consensus        85 ~~~~~~~al~~~~~~l~--~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          85 SAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHH--hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence            33456678888989998  999999999999998877765  6799999999999999988776 467899999999999


Q ss_pred             hhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh-----------------cCCChhh--HHHH--------
Q 021611          177 GAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV-----------------GRDPRPV--MREA--------  229 (310)
Q Consensus       177 A~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~-----------------~~d~~~~--~~~a--------  229 (310)
                      |++.++++++++|++..++.+++.+..++|++++|...+.++                 .+.....  +..+        
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~  242 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL  242 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence            999999999999998875444444444677766654433211                 1100000  0000        


Q ss_pred             ------HHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHh
Q 021611          230 ------YNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVH  301 (310)
Q Consensus       230 ------~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~  301 (310)
                            ...+...++.++++..+.  ...+|+...+++.+|.++..+|++++|+.+|++|+++.+  ...+|+..|+...
T Consensus       243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP--~~~~y~~~L~~~~  320 (334)
T d1dcea1         243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP--MRAAYLDDLRSKF  320 (334)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG--GGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc--ccHHHHHHHHHHH
Confidence                  000111123445555553  334566778888999999999999999999999999653  3458888886544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.9e-14  Score=122.87  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=49.9

Q ss_pred             HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc
Q 021611          127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY  206 (310)
Q Consensus       127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~  206 (310)
                      ++++|..+...|++++|++.|+++   .|.++.+++++|.++..+|++++|+++|++|++++|+++.++..++.+..++|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            345566666666666666666553   23334556666666666666666666666666666666554443444444566


Q ss_pred             ChHHHHHhHHH
Q 021611          207 GVDEARNRFLE  217 (310)
Q Consensus       207 ~~~eA~~~l~~  217 (310)
                      ++++|+..+.+
T Consensus        85 ~~~~A~~~~~k   95 (192)
T d1hh8a_          85 KYDLAIKDLKE   95 (192)
T ss_dssp             CHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            66666655554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.2e-14  Score=115.62  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=85.8

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      +..+..+|..+++.|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.++...+.+..
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999886555555555


Q ss_pred             hhcChHHHHHhHHHh
Q 021611          204 QLYGVDEARNRFLEV  218 (310)
Q Consensus       204 ~l~~~~eA~~~l~~~  218 (310)
                      .+|++++|...+.++
T Consensus        90 ~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          90 ALGKFRAALRDYETV  104 (159)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            889999999988763

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=1.5e-14  Score=118.37  Aligned_cols=95  Identities=20%  Similarity=0.354  Sum_probs=85.5

Q ss_pred             cccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheec----------cccccchhhhhhccccCcchhhHHHhhcc
Q 021611           97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ----------GDVVGSVAEFDKAIELDPRQKAYLWQRGL  166 (310)
Q Consensus        97 ~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~----------g~~~eAl~~f~kAl~l~P~~~~a~~~~G~  166 (310)
                      .+.|-+.+.+|...|.+++.  ++|+++.+++++|.++...          +++++|++.|++||+++|+++.+|+++|.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            45666678899999999999  9999999999999999865          44578999999999999999999999999


Q ss_pred             chhhhhh-----------hhhhhhhhhhhhccCCCCCc
Q 021611          167 SLYYLDR-----------FEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       167 a~~~lg~-----------~~eA~~~f~~Al~l~P~d~~  193 (310)
                      ++..+|+           |++|+++|+++++++|++..
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~  121 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  121 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence            9998875           79999999999999998865

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-13  Score=110.00  Aligned_cols=118  Identities=17%  Similarity=0.199  Sum_probs=98.4

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE  202 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~  202 (310)
                      .+..+..+|..++..|+|++|+..|+++|+++|+++.++.++|.++..+|+|++|+.+|+++++++|+++..  |..   
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~---   77 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--YRQ---   77 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--HHH---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHH--HHH---
Confidence            467788999999999999999999999999999999999999999999999999999999999999987642  110   


Q ss_pred             hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611          203 AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC  282 (310)
Q Consensus       203 a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl  282 (310)
                                                                         ...+++.+|.++..+|++++|+.+|++++
T Consensus        78 ---------------------------------------------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          78 ---------------------------------------------------IAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                                                               11234468999999999999999999999


Q ss_pred             cCCCCCCChHHHHHHHH
Q 021611          283 ESPYGQRSDDYMAALAK  299 (310)
Q Consensus       283 ~~~~~~~s~~~~~~la~  299 (310)
                      ...   ..++.+..+..
T Consensus       107 ~~~---~~~~~~~~l~~  120 (128)
T d1elra_         107 AEH---RTPDVLKKCQQ  120 (128)
T ss_dssp             HHC---CCHHHHHHHHH
T ss_pred             hcC---CCHHHHHHHHH
Confidence            843   23455555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.35  E-value=4.1e-14  Score=110.44  Aligned_cols=94  Identities=9%  Similarity=0.101  Sum_probs=82.9

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA  203 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a  203 (310)
                      ...++.+|.++++.|++++|+..|+++++++|+++.+|..+|.++..+|++++|+.+|+++++++|+++.++...+.+..
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            35568899999999999999999999999999999999999999999999999999999999999999875444444445


Q ss_pred             hhcChHHHHHhHHH
Q 021611          204 QLYGVDEARNRFLE  217 (310)
Q Consensus       204 ~l~~~~eA~~~l~~  217 (310)
                      ..|++++|++.+.+
T Consensus        96 ~~g~~~~A~~~l~~  109 (112)
T d1hxia_          96 NEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHH
Confidence            78899999988876

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=7.1e-14  Score=116.08  Aligned_cols=76  Identities=17%  Similarity=0.289  Sum_probs=73.6

Q ss_pred             CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      .++|.++.++.++|.++..+|++++|+.+|++||+++|+++.+|+++|.++..+|++++|+.+|+++++++|++..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            3789999999999999999999999999999999999999999999999999999999999999999999999876

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=8.8e-14  Score=126.29  Aligned_cols=201  Identities=8%  Similarity=-0.068  Sum_probs=143.6

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc----------cccchhhhhhccccCcchhhHHHhhccchhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD  172 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~----------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg  172 (310)
                      ..++|..++.+++.  ++|+++.+|..|+.++..+++          +++|+..|+++++.+|+++.+|+.+|.++..++
T Consensus        44 ~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          44 LDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred             ccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence            44678899999998  999999999888877666554          789999999999999999999999999988887


Q ss_pred             h--hhhhhhhhhhhhccCCCCCcccee-eeehhhhhcChHHHHHhHHHhcC-CCh--hhHHHHHHhhcCCCChHHH----
Q 021611          173 R--FEEGAEQFRIDVAQNPNDTEESIW-CFLCEAQLYGVDEARNRFLEVGR-DPR--PVMREAYNMFKGGGDPEKL----  242 (310)
Q Consensus       173 ~--~~eA~~~f~~Al~l~P~d~~~~~~-~~l~~a~l~~~~eA~~~l~~~~~-d~~--~~~~~a~~l~~~~~~~e~a----  242 (310)
                      +  +++|+..++++++++|++..+... .+......+.+++|+..+.++.. +|.  ..+.....++...++++++    
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            5  899999999999999988664211 11222356779999998876432 333  2222211122222222211    


Q ss_pred             --------------------------HHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHH
Q 021611          243 --------------------------VAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYM  294 (310)
Q Consensus       243 --------------------------l~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~  294 (310)
                                                ...+.  ....++...++..+|.++...|+.++|+..+.++++..  +.+...+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~  279 (334)
T d1dcea1         202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTI  279 (334)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred             HHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHH
Confidence                                      00000  01223334456678999999999999999999999944  3456888


Q ss_pred             HHHHHHhhcccCC
Q 021611          295 AALAKVHSLCRNW  307 (310)
Q Consensus       295 ~~la~~~~~~~~~  307 (310)
                      ..+|.++...|++
T Consensus       280 ~~l~~~~~~~~~~  292 (334)
T d1dcea1         280 ILLMRALDPLLYE  292 (334)
T ss_dssp             HHHHHHHCTGGGH
T ss_pred             HHHHHHHHHCCCH
Confidence            8999999888865

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.5e-13  Score=108.18  Aligned_cols=90  Identities=11%  Similarity=0.226  Sum_probs=81.3

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhhee---ccccccchhhhhhccccCcch--hhHHHhhccchhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR---QGDVVGSVAEFDKAIELDPRQ--KAYLWQRGLSLYYLDRFEEG  177 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~---~g~~~eAl~~f~kAl~l~P~~--~~a~~~~G~a~~~lg~~~eA  177 (310)
                      .+..|...|.+++.  ++|+++.+++++|.+++.   .+++++|+..|+++++.+|..  ..+++++|.++..+|+|++|
T Consensus        14 ~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A   91 (122)
T d1nzna_          14 DLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHH
Confidence            46678899999998  999999999999999986   556678999999999999865  46899999999999999999


Q ss_pred             hhhhhhhhccCCCCCcc
Q 021611          178 AEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       178 ~~~f~~Al~l~P~d~~~  194 (310)
                      +++|+++++++|++.++
T Consensus        92 ~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             HHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHhCcCCHHH
Confidence            99999999999998763

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.25  E-value=3.2e-13  Score=105.25  Aligned_cols=85  Identities=11%  Similarity=0.024  Sum_probs=80.2

Q ss_pred             cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611           99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA  178 (310)
Q Consensus        99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~  178 (310)
                      .+.+...+|...+++++.  ++|+++.+|+.+|.++...|++++|+.+|+++++++|++..+++.+|.++..+|++++|+
T Consensus        27 ~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~  104 (112)
T d1hxia_          27 LKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL  104 (112)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHH
Confidence            344567789999999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhh
Q 021611          179 EQFRIDV  185 (310)
Q Consensus       179 ~~f~~Al  185 (310)
                      +.|++.+
T Consensus       105 ~~l~~~l  111 (112)
T d1hxia_         105 ASLRAWL  111 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999876

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.23  E-value=4.8e-13  Score=111.20  Aligned_cols=93  Identities=17%  Similarity=0.206  Sum_probs=79.9

Q ss_pred             hcccchhhhhhhhcCC-------------CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch
Q 021611          102 LFIPSVSGIWDALTGG-------------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL  168 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~-------------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~  168 (310)
                      +.+.+|...|.+++..             ..++....++.++|.++..+|++++|+.+++++++++|++..+++.+|.++
T Consensus        29 ~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~  108 (168)
T d1kt1a1          29 GKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ  108 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHH
Confidence            3456677778776531             122334577889999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          169 YYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ..+|+|++|+++|+++++++|+++++
T Consensus       109 ~~l~~~~~A~~~~~~al~l~P~n~~~  134 (168)
T d1kt1a1         109 LLMNEFESAKGDFEKVLEVNPQNKAA  134 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999998764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.4e-12  Score=105.68  Aligned_cols=94  Identities=14%  Similarity=0.185  Sum_probs=77.9

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch---------------hhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---------------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN  188 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---------------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~  188 (310)
                      +..+..+|..++..|+|++|+..|++||++.|..               ...+.++|.++..+|+|++|+.+++++++++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            6778899999999999999999999999997743               3567789999999999999999999999999


Q ss_pred             CCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          189 PNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       189 P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      |+++.++.+.+.+...+|++++|+..+.+
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  121 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQK  121 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence            99877655555555567777777776664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.20  E-value=4e-13  Score=110.28  Aligned_cols=91  Identities=15%  Similarity=0.202  Sum_probs=78.0

Q ss_pred             cccchhhhhhhhcCC-----C---------CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch
Q 021611          103 FIPSVSGIWDALTGG-----N---------NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL  168 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~-----~---------~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~  168 (310)
                      .+..|...|.+++..     .         ..+-....+.++|.+++.+|++++|+.+|++||+++|++..+|+.+|.++
T Consensus        32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~  111 (153)
T d2fbna1          32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN  111 (153)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHH
Confidence            455677777776531     0         11123468889999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          169 YYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       169 ~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      ..+|++++|+.+|+++++++|+++.
T Consensus       112 ~~lg~~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1         112 MYFGFLEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999876

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.3e-13  Score=110.19  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=79.5

Q ss_pred             cccchhhhhhhhcCC-------------CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchh
Q 021611          103 FIPSVSGIWDALTGG-------------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLY  169 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~-------------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~  169 (310)
                      -+.+|...|.++|..             ...+-...+|.++|.+|+.+|++++|+.++++||+++|+++.+++.+|.+++
T Consensus        28 ~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  107 (170)
T d1p5qa1          28 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  107 (170)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH
Confidence            456677888777641             0122345788899999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          170 YLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       170 ~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      .+|+|++|+.+|+++++++|+++..
T Consensus       108 ~~g~~~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1         108 AVNDFELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999999999998764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-12  Score=103.35  Aligned_cols=89  Identities=12%  Similarity=0.208  Sum_probs=78.7

Q ss_pred             chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh-------HHHhhccchhhhh
Q 021611          100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA-------YLWQRGLSLYYLD  172 (310)
Q Consensus       100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~-------a~~~~G~a~~~lg  172 (310)
                      +.+.+.+|...|++++.  ++|+++.++.++|.++..+|+|++|+.+|++||+++|+++.       ++..+|.++..++
T Consensus        16 ~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~   93 (128)
T d1elra_          16 KKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE   93 (128)
T ss_dssp             HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence            34467889999999999  99999999999999999999999999999999999998865       4556777778888


Q ss_pred             hhhhhhhhhhhhhccCCC
Q 021611          173 RFEEGAEQFRIDVAQNPN  190 (310)
Q Consensus       173 ~~~eA~~~f~~Al~l~P~  190 (310)
                      ++++|++.|++++..+|+
T Consensus        94 ~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          94 KYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             CHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHhcCCC
Confidence            999999999999988774

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=2e-11  Score=100.88  Aligned_cols=93  Identities=12%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccc----------------cCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIE----------------LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~----------------l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      +..+..+|..++..|+|++|+..|+++|+                ++|.+..++.++|.++..+|+|++|+.+|++++++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            45567899999999999999999999985                46778888999999999999999999999999999


Q ss_pred             CCCCCccceeeeehhhhhcChHHHHHhHH
Q 021611          188 NPNDTEESIWCFLCEAQLYGVDEARNRFL  216 (310)
Q Consensus       188 ~P~d~~~~~~~~l~~a~l~~~~eA~~~l~  216 (310)
                      +|+++.++.+++.+...+|++++|+..+.
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~  135 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLK  135 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHH
Confidence            99886643333333334444444444444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2e-12  Score=125.08  Aligned_cols=192  Identities=4%  Similarity=-0.159  Sum_probs=115.0

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHH-----------Hh-----------
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYL-----------WQ-----------  163 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~-----------~~-----------  163 (310)
                      +|...+.+++.  ++|+.+++++++|.++..+|++++|   |+++|.++|++..++           ++           
T Consensus         4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence            46677888887  8888888888888888888888876   888888888765432           11           


Q ss_pred             -------------hccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-CCChhhHHHH
Q 021611          164 -------------RGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-RDPRPVMREA  229 (310)
Q Consensus       164 -------------~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-~d~~~~~~~a  229 (310)
                                   ++.+....+.|+.|+..+.+++.++|++...+...+......++.++|...+.+.. .++...+...
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~L  158 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL  158 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence                         22334456778888888888889999887654444444446777878777655422 1222112222


Q ss_pred             HHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611          230 YNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLC  304 (310)
Q Consensus       230 ~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~  304 (310)
                      ..++...+++++|+..+..  ...|+...+++.+|.++..+|+..+|+.+|.+|+.++.+  -+..+.+|+.+....
T Consensus       159 G~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~--~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP--FPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHh
Confidence            3344556788888888763  346777788889999999999999999999999996543  467888888776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=7.5e-12  Score=101.94  Aligned_cols=67  Identities=15%  Similarity=0.094  Sum_probs=58.9

Q ss_pred             hhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh----------hhhhhhhhhhhhhhccCCCCCccce
Q 021611          130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL----------DRFEEGAEQFRIDVAQNPNDTEESI  196 (310)
Q Consensus       130 rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l----------g~~~eA~~~f~~Al~l~P~d~~~~~  196 (310)
                      .+..+-++++|++|+..|++|++++|+++.+++++|.++..+          +++++|++.|+++++++|+++.++.
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            456677889999999999999999999999999999999865          5558899999999999999987533

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.1e-12  Score=96.83  Aligned_cols=71  Identities=10%  Similarity=0.088  Sum_probs=65.5

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccCcch-------hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ++.++.+|.++..+|+|++|+.+|++|+++.|.+       ..++.++|.++.++|++++|++.|+++++++|+++.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            5678999999999999999999999999997754       5678999999999999999999999999999999863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.05  E-value=9e-12  Score=101.97  Aligned_cols=111  Identities=12%  Similarity=-0.000  Sum_probs=87.4

Q ss_pred             hHHHHHHHh--hhhheeccccccchhhhhhccccCcch------------hhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611          122 REAVVAIRR--GMLLFRQGDVVGSVAEFDKAIELDPRQ------------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ  187 (310)
Q Consensus       122 ~~~~a~~~r--G~~~~~~g~~~eAl~~f~kAl~l~P~~------------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l  187 (310)
                      +.+.++..+  |..++..|+|++|+..|++||+++|+.            ..+|.++|.++..+|+|++|++++++++++
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            344555555  889999999999999999999998864            357889999999999999999999999998


Q ss_pred             CCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhh
Q 021611          188 NPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYES  267 (310)
Q Consensus       188 ~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~  267 (310)
                      .|+....  +.                        .                          ..+....+++.+|.+|..
T Consensus        85 ~~~~~~~--~~------------------------~--------------------------~~~~~~~a~~~~g~~~~~  112 (156)
T d2hr2a1          85 FNRRGEL--NQ------------------------D--------------------------EGKLWISAVYSRALALDG  112 (156)
T ss_dssp             HHHHCCT--TS------------------------T--------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc--cc------------------------c--------------------------ccchhHHHHhhhHHHHHH
Confidence            7743321  00                        0                          000112356679999999


Q ss_pred             ccchhhHHHHHHHhhcC
Q 021611          268 QKKADAAKLHILAACES  284 (310)
Q Consensus       268 ~G~~d~A~~~~~kAl~~  284 (310)
                      +|++++|+.+|++|+++
T Consensus       113 lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1         113 LGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999999985

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.2e-11  Score=95.69  Aligned_cols=110  Identities=9%  Similarity=-0.004  Sum_probs=81.1

Q ss_pred             HhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhh---hhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611          129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY---LDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL  205 (310)
Q Consensus       129 ~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~---lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l  205 (310)
                      ++...+...+++++|++.|+++++++|+++.+++++|.++..   .+++++|+..|+++++.+|++.             
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~-------------   70 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-------------   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-------------
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch-------------
Confidence            345566777888888888888888888888888888888765   5666778888888887776321             


Q ss_pred             cChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          206 YGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       206 ~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                                                                      ...+++++|.+|..+|++++|+.+|++++++.
T Consensus        71 ------------------------------------------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          71 ------------------------------------------------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             ------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ------------------------------------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence                                                            12245679999999999999999999999955


Q ss_pred             CCCCChHHHHHHHHHh
Q 021611          286 YGQRSDDYMAALAKVH  301 (310)
Q Consensus       286 ~~~~s~~~~~~la~~~  301 (310)
                      +  .+.++...+..+.
T Consensus       103 P--~~~~A~~l~~~I~  116 (122)
T d1nzna_         103 P--QNNQAKELERLID  116 (122)
T ss_dssp             T--TCHHHHHHHHHHH
T ss_pred             c--CCHHHHHHHHHHH
Confidence            3  3446655555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.99  E-value=7.1e-11  Score=97.73  Aligned_cols=96  Identities=13%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcc---------------hhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---------------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---------------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      ..+..+..+|..++..|+|.+|+..|++||.+.|.               ....+.++|.++..+|+|++|+.+++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            45678899999999999999999999999975432               345677899999999999999999999999


Q ss_pred             cCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      ++|++..++++++.+...+|++++|+..+.+
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~  123 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEK  123 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999988777777777788999999888876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.96  E-value=6.8e-11  Score=96.58  Aligned_cols=97  Identities=7%  Similarity=0.097  Sum_probs=85.0

Q ss_pred             hHHHHHHHhhhhheeccccccchhhhhhccccCcch----------------hhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611          122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----------------KAYLWQRGLSLYYLDRFEEGAEQFRIDV  185 (310)
Q Consensus       122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----------------~~a~~~~G~a~~~lg~~~eA~~~f~~Al  185 (310)
                      +.+..+...|..++..|+|.+|+..|.+||++-|..                ...+.++|.+++.+|++++|++++++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            346678899999999999999999999999877632                2467799999999999999999999999


Q ss_pred             ccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611          186 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV  218 (310)
Q Consensus       186 ~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~  218 (310)
                      +++|++..++++.+.+...+|++++|+..+.++
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            999999987777777777999999999998763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.1e-10  Score=102.09  Aligned_cols=205  Identities=10%  Similarity=-0.076  Sum_probs=125.6

Q ss_pred             hcccchhhhhhhhcCCCCchhH-----HHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSRE-----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYY  170 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~-----~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~  170 (310)
                      |...+|..+|.+++.  ..|++     ..++..+|.++..+|++++|+..|++++++.|..      ..++.++|.++..
T Consensus        26 g~~~~A~~~~~~aL~--~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          26 GNPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             TCHHHHHHHHHHHHH--TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh--hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            356778889988887  66654     4688899999999999999999999999886543      4566788888888


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCc------cceeeeehh--hhhcChHHHHHhHHHhc---C-------------------
Q 021611          171 LDRFEEGAEQFRIDVAQNPNDTE------ESIWCFLCE--AQLYGVDEARNRFLEVG---R-------------------  220 (310)
Q Consensus       171 lg~~~eA~~~f~~Al~l~P~d~~------~~~~~~l~~--a~l~~~~eA~~~l~~~~---~-------------------  220 (310)
                      .|++.+|+..+.+++++.+....      +.....++.  ...|+++++...+.+..   +                   
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  183 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            89999999988888875432211      111111222  24566666666543311   0                   


Q ss_pred             -----------------------CChhh----HHHHHHhhcCCCChHHHHHHhcCC----C--CcchhHhhhhhhhhhhh
Q 021611          221 -----------------------DPRPV----MREAYNMFKGGGDPEKLVAAFSSG----R--ENEYFYASLYAGLFYES  267 (310)
Q Consensus       221 -----------------------d~~~~----~~~a~~l~~~~~~~e~al~~~~~~----~--~~d~~~a~~~lG~~~~~  267 (310)
                                             ...+.    ......++...++.+++...+...    .  +.........+|.++..
T Consensus       184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  263 (366)
T d1hz4a_         184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL  263 (366)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence                                   00000    001111233345555555444311    1  11223344557788888


Q ss_pred             ccchhhHHHHHHHhhcC----CCCCCChHHHHHHHHHhhcccCCc
Q 021611          268 QKKADAAKLHILAACES----PYGQRSDDYMAALAKVHSLCRNWS  308 (310)
Q Consensus       268 ~G~~d~A~~~~~kAl~~----~~~~~s~~~~~~la~~~~~~~~~~  308 (310)
                      +|++++|..++++++..    .........+..+|.++..+|+|.
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  308 (366)
T d1hz4a_         264 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS  308 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence            88888888888888752    111122345667788888888763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.3e-09  Score=96.97  Aligned_cols=161  Identities=9%  Similarity=-0.043  Sum_probs=109.3

Q ss_pred             HHHHHHhhhhheeccccccchhhhhhccccC------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc----
Q 021611          124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE----  193 (310)
Q Consensus       124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~----  193 (310)
                      ++.|...|.+|..+|++++|++.|.+|+++.      |+...++.++|.++..+|++++|++.|++++++.++...    
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            5688999999999999999999999999984      344678999999999999999999999999998765432    


Q ss_pred             cceeeeehhh---hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccc
Q 021611          194 ESIWCFLCEA---QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKK  270 (310)
Q Consensus       194 ~~~~~~l~~a---~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~  270 (310)
                      ...+..++..   .+|++++|+..+.++           ..+...            ...++.....+..+|.++..+|+
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A-----------~~l~~~------------~~~~~~~~~~~~~la~~~~~~g~  173 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELA-----------GEWYAQ------------DQSVALSNKCFIKCADLKALDGQ  173 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHH-----------HHHHHH------------TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHH-----------HHHHHh------------cCchhhhhhHHHHHHHHHHHcCh
Confidence            1111122211   234455555444431           001110            11122234455668999999999


Q ss_pred             hhhHHHHHHHhhcCCCCCC-----ChHHHHHHHHHhhcccCC
Q 021611          271 ADAAKLHILAACESPYGQR-----SDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       271 ~d~A~~~~~kAl~~~~~~~-----s~~~~~~la~~~~~~~~~  307 (310)
                      +++|+..|++++.+.....     ...++...+..++..|++
T Consensus       174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  215 (290)
T d1qqea_         174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (290)
T ss_dssp             HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence            9999999999998532211     124455667777666654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.85  E-value=5.4e-11  Score=97.19  Aligned_cols=89  Identities=16%  Similarity=0.048  Sum_probs=76.4

Q ss_pred             cccchhhhhhhhcCCCCchh------------HHHHHHHhhhhheeccccccchhhhhhccccCcc-----------hhh
Q 021611          103 FIPSVSGIWDALTGGNNNSR------------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-----------QKA  159 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~------------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-----------~~~  159 (310)
                      .+.+|...|.+++.  ++|+            .+.+|.++|.+|..+|++++|++++++++++.|.           ...
T Consensus        24 ~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          24 EYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             CHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHH
Confidence            46678888998876  5443            4678999999999999999999999999988664           344


Q ss_pred             HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +++++|.++..+|++++|+++|++++++.|+...
T Consensus       102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1         102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            7899999999999999999999999999886553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=6.1e-09  Score=93.21  Aligned_cols=199  Identities=11%  Similarity=-0.001  Sum_probs=132.3

Q ss_pred             chhhhhhhhcCCCCchhHHHHHHHhhhhhe--------------eccccccchhhhhhcccc-CcchhhHHHhhccchhh
Q 021611          106 SVSGIWDALTGGNNNSREAVVAIRRGMLLF--------------RQGDVVGSVAEFDKAIEL-DPRQKAYLWQRGLSLYY  170 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~--------------~~g~~~eAl~~f~kAl~l-~P~~~~a~~~~G~a~~~  170 (310)
                      .+..+|.+++.  ..|.++.+|+.-+..+.              ..+..++|...|++|++. .|.+...|...+.....
T Consensus        34 Rv~~vyerAl~--~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          34 RVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            35567778877  77888888887665443              334567888999999974 77778888888888889


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhc---CCChhhH-HHHHHhhcCCCChHHHHH
Q 021611          171 LDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVG---RDPRPVM-REAYNMFKGGGDPEKLVA  244 (310)
Q Consensus       171 lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~---~d~~~~~-~~a~~l~~~~~~~e~al~  244 (310)
                      .|++++|...|+++++..|.+.. ..|..++..  +.++.++|+..+.++.   +.....+ ..+.......++.+.+..
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~  190 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence            99999999999999999887753 245443333  5678888888887743   2222222 222222344567777766


Q ss_pred             HhcCCC--CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC-CC-CChHHHHHHHHHhhcccCC
Q 021611          245 AFSSGR--ENEYFYASLYAGLFYESQKKADAAKLHILAACESPY-GQ-RSDDYMAALAKVHSLCRNW  307 (310)
Q Consensus       245 ~~~~~~--~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~-~~-~s~~~~~~la~~~~~~~~~  307 (310)
                      .+....  .|+....+...+.+...+|+++.|+..|++|++... .+ .+...+......+..+|+.
T Consensus       191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence            654221  233344444566677788999999999999988421 11 2334555667777777764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.1e-09  Score=92.49  Aligned_cols=188  Identities=8%  Similarity=-0.110  Sum_probs=125.3

Q ss_pred             chhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-----hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611          120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-----AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE  194 (310)
Q Consensus       120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-----~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~  194 (310)
                      ++-.+++...+|.+++.+|++++|+..|++++++.|++.     .++..+|.++..+|++++|+..|++++++.|.....
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            455678899999999999999999999999999999863     578899999999999999999999999987654321


Q ss_pred             ----ceeeeeh--hhhhcChHHHHHhHHHhc-------CCChhhHH----HHHHhhcCCCChHHHHHHhc-------CCC
Q 021611          195 ----SIWCFLC--EAQLYGVDEARNRFLEVG-------RDPRPVMR----EAYNMFKGGGDPEKLVAAFS-------SGR  250 (310)
Q Consensus       195 ----~~~~~l~--~a~l~~~~eA~~~l~~~~-------~d~~~~~~----~a~~l~~~~~~~e~al~~~~-------~~~  250 (310)
                          ..+..++  ....+++.++...+.++.       ....+...    .....+...++.+++...+.       ...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence                1111222  225678888877665421       11111111    11123334677777655542       112


Q ss_pred             CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC-CCCC----hHHHHHHHHHhhcccCC
Q 021611          251 ENEYFYASLYAGLFYESQKKADAAKLHILAACESPY-GQRS----DDYMAALAKVHSLCRNW  307 (310)
Q Consensus       251 ~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~-~~~s----~~~~~~la~~~~~~~~~  307 (310)
                      ......+....|..+...|+++++...+.++..... ....    ...+..++.++...|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T d1hz4a_         168 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  229 (366)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence            233445566788899999999999999999887311 1111    22334456666666654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.66  E-value=1.2e-09  Score=97.70  Aligned_cols=124  Identities=15%  Similarity=0.026  Sum_probs=91.0

Q ss_pred             hhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHH
Q 021611          131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE  210 (310)
Q Consensus       131 G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~e  210 (310)
                      +.-.+..|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+++++++|++...  +..++..     -.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~--~~~l~~l-----l~   75 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG--ASQLRHL-----VK   75 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH--HHHHHHH-----HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH--HHHHHHH-----HH
Confidence            3446778999999999999999999999999999999999999999999999999999987652  2111111     00


Q ss_pred             HHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhc---CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611          211 ARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFS---SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP  285 (310)
Q Consensus       211 A~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~---~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~  285 (310)
                      +...                        .+++.....   ...+++....++..+..+...|+.++|...+.++.+..
T Consensus        76 a~~~------------------------~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          76 AAQA------------------------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHH------------------------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hccc------------------------cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            0000                        111111111   12234556666678889999999999999999999854

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=2.3e-09  Score=95.30  Aligned_cols=160  Identities=13%  Similarity=0.069  Sum_probs=109.0

Q ss_pred             cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhh-h
Q 021611          103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYY-L  171 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~-l  171 (310)
                      .+++|...|.+++..    ...|..+..|.++|.+|..+|++++|++.|++++++.+..      ..++.++|.++.. +
T Consensus        52 ~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  131 (290)
T d1qqea_          52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL  131 (290)
T ss_dssp             CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHH
Confidence            567778888877541    1245667899999999999999999999999999998765      5677889988865 6


Q ss_pred             hhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHH
Q 021611          172 DRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAA  245 (310)
Q Consensus       172 g~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~  245 (310)
                      |++++|++.|++++++.+.+..    ...+..++.  ..+|++++|+..+.++...           ....         
T Consensus       132 ~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~-----------~~~~---------  191 (290)
T d1qqea_         132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-----------SMGN---------  191 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------TSSC---------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh-----------Cccc---------
Confidence            9999999999999988654321    111222222  2566777776666552110           0000         


Q ss_pred             hcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          246 FSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       246 ~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                        ..........++..|.++...|+++.|...+.+++++
T Consensus       192 --~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         192 --RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             --TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             --hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence              0001111223445777888888888888888888885

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=1.4e-08  Score=85.24  Aligned_cols=99  Identities=7%  Similarity=-0.104  Sum_probs=83.0

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh----------------------hHHHhhccchhhhhhhhh
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK----------------------AYLWQRGLSLYYLDRFEE  176 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~----------------------~a~~~~G~a~~~lg~~~e  176 (310)
                      .|-+...++..+|......|++++|++.|++|+++.|+..                      .++.++|.++..+|++++
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            4556678999999999999999999999999999977432                      457789999999999999


Q ss_pred             hhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          177 GAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       177 A~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      |+.+++++++++|.+...+.....+..++|+..+|+..+.+
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~  126 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  126 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999998876433333445589999999988765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.4e-09  Score=99.53  Aligned_cols=97  Identities=9%  Similarity=-0.019  Sum_probs=34.6

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      ++|+++.++.++|.++...|++++|+..+.++++++|.  .++.++|.++...|+|++|+..|++|++++|++..++...
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             ----------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred             CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            55555555555555555555555555555555555443  3445555555555555555555555555555554432222


Q ss_pred             eehhhhhcChHHHHHhHHH
Q 021611          199 FLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       199 ~l~~a~l~~~~eA~~~l~~  217 (310)
                      +......|+..+|+..+.+
T Consensus       193 g~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            2222244555555555444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.4e-07  Score=84.06  Aligned_cols=178  Identities=7%  Similarity=-0.090  Sum_probs=131.8

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-hHHHhhccchhhhhhhhhhhhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-AYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      ....+..+|++++. ...|.+...|+..+..+..+|++++|...|+++++..|.+. ..|...+......|++++|.+.|
T Consensus        79 ~~~~a~~i~~ral~-~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          79 FSDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             chHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            45678889999986 25889999999999999999999999999999999999875 46788999999999999999999


Q ss_pred             hhhhccCCCCCccceeeeehhh---hhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC----C-C
Q 021611          182 RIDVAQNPNDTEESIWCFLCEA---QLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS----G-R  250 (310)
Q Consensus       182 ~~Al~l~P~d~~~~~~~~l~~a---~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~----~-~  250 (310)
                      +++++..|.+...  |...+..   ..|+.+.|...+.++   .++....+.....+....|+.+.|...+..    . .
T Consensus       158 ~~al~~~~~~~~~--~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDARTRHHV--YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTTCCTHH--HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCCCcHHH--HHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            9999999988764  3333322   246788888876653   344444443444555678888887666642    1 2


Q ss_pred             CcchhH-hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611          251 ENEYFY-ASLYAGLFYESQKKADAAKLHILAACE  283 (310)
Q Consensus       251 ~~d~~~-a~~~lG~~~~~~G~~d~A~~~~~kAl~  283 (310)
                      +++... .+......-...|+.+.+...++++.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333221 111223344566999999999999887

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.47  E-value=7.5e-08  Score=83.25  Aligned_cols=171  Identities=15%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhhhhhhhhhhhhccCCCCCccceee
Q 021611          123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFEEGAEQFRIDVAQNPNDTEESIWC  198 (310)
Q Consensus       123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~eA~~~f~~Al~l~P~d~~~~~~~  198 (310)
                      ||.+++++|..+...||+++|++.|.+|.+.  ++..+++++|.++..    ..++..|...++.+...+.  +.+  +.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~--~~a--~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY--SNG--CH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH--HH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc--cch--hh
Confidence            4789999999999999999999999999775  467889999999886    5688888888888876553  332  22


Q ss_pred             eehhh--h----hcChHHHHHhHHHhcC-CChhhHHH-------------------------------------HHHhhc
Q 021611          199 FLCEA--Q----LYGVDEARNRFLEVGR-DPRPVMRE-------------------------------------AYNMFK  234 (310)
Q Consensus       199 ~l~~a--~----l~~~~eA~~~l~~~~~-d~~~~~~~-------------------------------------a~~l~~  234 (310)
                      .++..  .    ....++|...+..... ........                                     +..+..
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~  154 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  154 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence            22221  1    2334555554433211 11111000                                     000111


Q ss_pred             C---CCChHHHHHHhcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611          235 G---GGDPEKLVAAFSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL  303 (310)
Q Consensus       235 ~---~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~  303 (310)
                      +   ..+.+.+...+....+.....+.+.+|.++..    ..++++|+.+|+++.+.    ..+..+++||.++..
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~----g~~~a~~~LG~~y~~  226 (265)
T d1ouva_         155 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----ENGGGCFNLGAMQYN  226 (265)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHT
T ss_pred             CCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc----cCHHHHHHHHHHHHc
Confidence            1   11122222222221122345677889988876    67899999999999993    356888999998873

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.4e-08  Score=71.96  Aligned_cols=88  Identities=11%  Similarity=-0.050  Sum_probs=70.6

Q ss_pred             hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCC
Q 021611          159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGD  238 (310)
Q Consensus       159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~  238 (310)
                      .-.+++|.+++..|+|++|+..|++|+++.|++...  +                                         
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~--~-----------------------------------------   42 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--T-----------------------------------------   42 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--S-----------------------------------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc--C-----------------------------------------
Confidence            456799999999999999999999999999876541  1                                         


Q ss_pred             hHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611          239 PEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLC  304 (310)
Q Consensus       239 ~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~  304 (310)
                                   ++...++.++|.++..+|++++|+.+|++++++.  +...+...+++.++..+
T Consensus        43 -------------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          43 -------------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             -------------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             -------------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHh
Confidence                         0112245579999999999999999999999965  45668888998876544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.38  E-value=1.4e-08  Score=90.48  Aligned_cols=114  Identities=11%  Similarity=-0.017  Sum_probs=92.7

Q ss_pred             hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611          102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF  181 (310)
Q Consensus       102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f  181 (310)
                      +...+|...+.+++.  .+|+++.++..+|.++...|++++|++.|+++++++|++..++..+|.++...+..+++...+
T Consensus        10 G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~   87 (264)
T d1zbpa1          10 GQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA   87 (264)
T ss_dssp             TCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence            356779999999998  999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             hhhhccC-CCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          182 RIDVAQN-PNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       182 ~~Al~l~-P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      .+...+. |++..............|+.++|...+.+
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~  124 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ  124 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            7766554 43222212112223367889999887765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=1.6e-07  Score=78.53  Aligned_cols=68  Identities=13%  Similarity=0.094  Sum_probs=64.2

Q ss_pred             CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611          119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA  186 (310)
Q Consensus       119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~  186 (310)
                      +.+....++..+|.++..+|++++|+.+++++++++|.+..+|..++.++..+|++++|++.|+++.+
T Consensus        62 l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          62 LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            56677789999999999999999999999999999999999999999999999999999999999833

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=1.4e-06  Score=68.80  Aligned_cols=70  Identities=10%  Similarity=0.096  Sum_probs=63.0

Q ss_pred             HHHHHHhhhhheec---cccccchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611          124 AVVAIRRGMLLFRQ---GDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE  193 (310)
Q Consensus       124 ~~a~~~rG~~~~~~---g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~  193 (310)
                      +.+.|+.|+++...   .+..+||..++++++.+|.. ..++|++|++++++|+|++|...++++++++|++..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            67889999988754   56679999999999999976 589999999999999999999999999999998865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.37  E-value=6.2e-05  Score=64.19  Aligned_cols=187  Identities=11%  Similarity=0.092  Sum_probs=114.3

Q ss_pred             cccchhhhhhhhcCCCCchhHHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhh
Q 021611          103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRF  174 (310)
Q Consensus       103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~  174 (310)
                      ...+|...|.++..    .+++.+++.+|.+|..    ..++..|...+.++.+.+  ++.+...+|.++..    .++.
T Consensus        17 d~~~A~~~~~kAa~----~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~   90 (265)
T d1ouva_          17 DFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT   90 (265)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccccccccccchhh
Confidence            45678888887764    3578899999999987    678888999999987655  55677777777654    4678


Q ss_pred             hhhhhhhhhhhccCCCCCccceeeeehhh----hhcChHHHHHhHHH---------------------------------
Q 021611          175 EEGAEQFRIDVAQNPNDTEESIWCFLCEA----QLYGVDEARNRFLE---------------------------------  217 (310)
Q Consensus       175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a----~l~~~~eA~~~l~~---------------------------------  217 (310)
                      +.|...|+++.+..+....  .+......    ......++...+.+                                 
T Consensus        91 ~~a~~~~~~a~~~g~~~a~--~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~  168 (265)
T d1ouva_          91 NKALQYYSKACDLKYAEGC--ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALAS  168 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHH--HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhHH--HhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhh
Confidence            8999999999887663321  22111111    01112222222111                                 


Q ss_pred             ---h-cCCChh-hHHHHHHhhcC---CCChHHHHHHhcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCC
Q 021611          218 ---V-GRDPRP-VMREAYNMFKG---GGDPEKLVAAFSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESP  285 (310)
Q Consensus       218 ---~-~~d~~~-~~~~a~~l~~~---~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~  285 (310)
                         . .....+ ....+..++.+   ..++++++..+..........+.+.+|.+|..    ..++++|..+|++|++  
T Consensus       169 ~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~--  246 (265)
T d1ouva_         169 YDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK--  246 (265)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH--
T ss_pred             hhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH--
Confidence               0 001111 11112222222   24577787777643333456678899998875    4489999999999998  


Q ss_pred             CCCCChHHHHHHHHHh
Q 021611          286 YGQRSDDYMAALAKVH  301 (310)
Q Consensus       286 ~~~~s~~~~~~la~~~  301 (310)
                      -|  ..+....|..+-
T Consensus       247 ~g--~~~A~~~l~~l~  260 (265)
T d1ouva_         247 LG--AKGACDILKQLK  260 (265)
T ss_dssp             HT--CHHHHHHHHTCC
T ss_pred             Cc--CHHHHHHHHHHH
Confidence            22  335555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=9.9e-05  Score=57.78  Aligned_cols=60  Identities=8%  Similarity=-0.021  Sum_probs=49.6

Q ss_pred             chhhhhhhhcCCCCchhH-HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccc
Q 021611          106 SVSGIWDALTGGNNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLS  167 (310)
Q Consensus       106 ~a~~~~~~ai~~~~~P~~-~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a  167 (310)
                      .+..++..+..  .+|.+ -+.+|.+|.++.++|+|++|...++++|+++|++..+...+-.+
T Consensus        56 ~gI~lLe~~~~--~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          56 LGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            45566666665  67765 48999999999999999999999999999999999887655444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.54  E-value=0.0019  Score=49.62  Aligned_cols=111  Identities=16%  Similarity=0.028  Sum_probs=63.6

Q ss_pred             cccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611          138 GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE  217 (310)
Q Consensus       138 g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~  217 (310)
                      .|+++|+.+|.++.+.+  ++.+.+++|.  ....++++|++.|+++.+.+  ++.+  ...++..              
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~~~a--~~~Lg~~--------------   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN--SGNG--CRFLGDF--------------   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--CHHH--HHHHHHH--------------
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhccc--chhh--hhhHHHh--------------
Confidence            46667777777776664  4455555553  23456667777776666543  2321  1111111              


Q ss_pred             hcCCChhhHHHHHHhhcC---CCChHHHHHHhcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcC
Q 021611          218 VGRDPRPVMREAYNMFKG---GGDPEKLVAAFSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACES  284 (310)
Q Consensus       218 ~~~d~~~~~~~a~~l~~~---~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~  284 (310)
                                    ++.+   ..+.++++..+....+.....+.+.+|.+|..    ..+.++|+.+|++|.+.
T Consensus        65 --------------y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          65 --------------YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             --------------HHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             --------------hhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence                          1111   12344555555432223345577789998876    46899999999999993

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.37  E-value=0.0055  Score=46.91  Aligned_cols=103  Identities=12%  Similarity=-0.009  Sum_probs=57.2

Q ss_pred             ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhhhhhh
Q 021611          104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFEEGAE  179 (310)
Q Consensus       104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~eA~~  179 (310)
                      ...|...|.++..  .  +++.+.+.+|.  ....++++|+..|.++.+.  +++.+.+.+|.++..    ..++++|++
T Consensus         9 ~~~A~~~~~kaa~--~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           9 LKKAIQYYVKACE--L--NEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHH--T--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHH--C--CChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            3445566665543  2  23445555553  3345667777777777654  455666677766554    345677777


Q ss_pred             hhhhhhccCCCCCccceeeeehhh--h----hcChHHHHHhHHHh
Q 021611          180 QFRIDVAQNPNDTEESIWCFLCEA--Q----LYGVDEARNRFLEV  218 (310)
Q Consensus       180 ~f~~Al~l~P~d~~~~~~~~l~~a--~----l~~~~eA~~~l~~~  218 (310)
                      .|+++.+...  +.+..  .++..  .    ..+.++|...+.++
T Consensus        81 ~~~~aa~~g~--~~a~~--~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          81 YYSKACGLND--QDGCL--ILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             HHHHHHHTTC--HHHHH--HHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHhhhhccCc--chHHH--HHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            7777776543  33322  22222  1    13466676666653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=84.43  E-value=0.5  Score=42.68  Aligned_cols=168  Identities=8%  Similarity=-0.127  Sum_probs=94.8

Q ss_pred             HhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcCh
Q 021611          129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV  208 (310)
Q Consensus       129 ~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~  208 (310)
                      ..+..+...+..+.|...++....-..+.....+..|.+ ...++++.+...|+....-....+...+|.+.+...+|+.
T Consensus       257 ~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~  335 (450)
T d1qsaa1         257 IVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE  335 (450)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH-HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCCh
Confidence            334455556777778887777766666655555555554 4568888888888765432222344557777777788998


Q ss_pred             HHHHHhHHHhcCCChhhHHHHH-HhhcCCCChHHHHHHhcCCCCcc---hhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611          209 DEARNRFLEVGRDPRPVMREAY-NMFKGGGDPEKLVAAFSSGRENE---YFYASLYAGLFYESQKKADAAKLHILAACES  284 (310)
Q Consensus       209 ~eA~~~l~~~~~d~~~~~~~a~-~l~~~~~~~e~al~~~~~~~~~d---~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~  284 (310)
                      ++|...+..+...+ ..++.+. ..++..-...-  .  .......   .....+-....+...|+..+|...++.+++.
T Consensus       336 ~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~~~~~~--~--~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~  410 (450)
T d1qsaa1         336 AEAKEILHQLMQQR-GFYPMVAAQRIGEEYELKI--D--KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS  410 (450)
T ss_dssp             HHHHHHHHHHHTSC-SHHHHHHHHHTTCCCCCCC--C--CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHhcCC-ChHHHHHHHHcCCCCCCCc--C--CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC
Confidence            88888888765533 3443222 11111000000  0  0000000   0111223556777888888888888888762


Q ss_pred             CCCCCChHHHHHHHHHhhcccC
Q 021611          285 PYGQRSDDYMAALAKVHSLCRN  306 (310)
Q Consensus       285 ~~~~~s~~~~~~la~~~~~~~~  306 (310)
                          .+++=...++.+-...|-
T Consensus       411 ----~~~~~~~~la~lA~~~g~  428 (450)
T d1qsaa1         411 ----KSKTEQAQLARYAFNNQW  428 (450)
T ss_dssp             ----CCHHHHHHHHHHHHHTTC
T ss_pred             ----CCHHHHHHHHHHHHHCCC
Confidence                233444566666555553