Citrus Sinensis ID: 021633

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MMGLTSLQVCMDSSDWLQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSMNQNPGSSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWSGMMNGYGSSTTNSLV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHcccccccccccccEEccccccEEEEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mmgltslqvcmdssdwlqgsiheesgldssspsgdmltcsrplmerrlrpphdqalkcprcdsthtkfcyynnyslsqpryfcktcrrywtkggtlrnipvgggcrknkkvsskksndqsmnqnpgssshnptdlqlsfpemqfSHLGNILGAhgtlannhnfmdnkysamlenprpidfmENKLEAIVGssrnydfmgnngdmgmvgglgnlshhhqegltpnvhnlcspfgmsldgtggtfidgcqrimlpydanevqnaidvkpnakllsldwqdqscsdvgylgnlgsswsgmmngygssttnslv
Flexible Loop (DISEMBL)
MMGLTSLQVCMDSSDWLQGSIHEesgldssspsgDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYnnyslsqpryFCKTCRRYWTKggtlrnipvgggcrkNKKVSSKKsndqsmnqnpgsssHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSswsgmmngygssttnslv
Low Complexity Region (SEG)
MMGLTSLQVCMDSSDWLQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRknkkvsskksnDQSMNQNPGSSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFmgnngdmgmvgglgnLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWSGMMNGYGSSTTNSLV
Disordered region (IsUnstruct)
*******************************************************LKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGC************************************MQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWS***************
Disordered Region (DISOPRED)
************************************************************CDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRN*********************************************************************************************************************************************************************************************GNLGSSWSGMMNGYG********
Disordered Region (DISEMBL)
MMGLTSLQVCMDSSDWLQGSIH**************LTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGG****************************TDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWSGMMNGYG********
Disordered Region (DISPRO)
**************************************************PHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVG**************************************EMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWSGMMNGYGS**T****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMGLTSLQVCMDSSDWLQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSMNQNPGSSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVGYLGNLGSSWSGMMNGYGSSTTNSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q9FM03	372	Dof zinc finger protein D	yes	no	0.925	0.771	0.431	3e-54
Q84TE9	257	Dof zinc finger protein D	no	no	0.361	0.435	0.533	1e-30
O24463	328	Dof zinc finger protein P	N/A	no	0.219	0.207	0.779	4e-29
Q9M1E6	245	Dof zinc finger protein D	no	no	0.558	0.706	0.396	2e-28
Q8LAP8	342	Dof zinc finger protein D	no	no	0.212	0.192	0.787	6e-28
Q8LE43	288	Dof zinc finger protein D	no	no	0.303	0.326	0.544	2e-26
Q8LDR0	307	Dof zinc finger protein D	no	no	0.270	0.273	0.588	5e-26
O80928	330	Dof zinc finger protein D	no	no	0.190	0.178	0.762	9e-26
Q9M2U1	323	Dof zinc finger protein D	no	no	0.209	0.201	0.723	2e-25
Q84JQ8	352	Dof zinc finger protein D	no	no	0.2	0.176	0.774	2e-25

>sp|Q9FM03|DOF56_ARATH Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 170/394 (43%), Positives = 212/394 (53%), Gaps = 107/394 (27%)

Query: 2   MGLTSLQVCMDSSDWLQGSIHEESG---LDSS--SPSG-DMLTC--SRP----------- 42
           MGLTSLQVCMDS DWLQ S  E SG   LDSS  SPS  D+L    +RP           
Sbjct: 1   MGLTSLQVCMDS-DWLQES--ESSGGSMLDSSTNSPSAADILAACSTRPQASAVAVAAAA 57

Query: 43  LME--RRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIP 100
           LM+  RRLRPPHD   KCPRC+STHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIP
Sbjct: 58  LMDGGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIP 117

Query: 101 VGGGCRKNKK-------------------VSSKKSNDQSMNQNPGSSSHNPTDLQLSFPE 141
           VGGGCRKNKK                   V++  S+  ++  +  +  H+P         
Sbjct: 118 VGGGCRKNKKPSSSNSSSSTSSGKKPSNIVTANTSDLMALAHSHQNYQHSP--------- 168

Query: 142 MQFSHLGNILGAHGTLAN-NHNFMDNKYSAML-ENPRPIDFMENKLEAIVGSSRNYDFMG 199
           + FSH G ++G++ T  + N  F+++KY  +L ++PRPIDF+++K          +D MG
Sbjct: 169 LGFSHFGGMMGSYSTPEHGNVGFLESKYGGLLSQSPRPIDFLDSK----------FDLMG 218

Query: 200 -NNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTF-------------ID 245
            NN ++ MV    N  HHH       +++       + +G                  I 
Sbjct: 219 VNNDNLVMVNHGSNGDHHHHHNHHMGLNHGVGLNNNNNNGGFNGISTGGNGNGGGLMDIS 278

Query: 246 GCQRIMLP----------YDANEVQNAIDVKPNAKLLSLDWQDQSC-------------- 281
            CQR+ML            D   V   +DVKPN KLLSLDWQ   C              
Sbjct: 279 TCQRLMLSNYDHHHYNHQEDHQRVATIMDVKPNPKLLSLDWQQDQCYSNGGGSGGAGKSD 338

Query: 282 ----SDVGYLGNLGSSWSGMMNGYGSST-TNSLV 310
                + GY+  LGSSW+G+MNGYG+ST TNSLV
Sbjct: 339 GGGYGNGGYINGLGSSWNGLMNGYGTSTKTNSLV 372

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 88/133 (66%), Gaps = 21/133 (15%)

Query: 47  RLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCR 106
           R +PP + AL+CPRCDST+TKFCYYNNYSL+QPRYFCK+CRRYWTKGGTLRNIPVGGGCR
Sbjct: 47  RPQPP-ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCR 105

Query: 107 KNKKVSSKKSNDQSMNQNPGSSSHN----------------PTDLQLSFPEMQFSHLGNI 150
           KNK+ +S  S  +S+   P  +SH+                  DL L+F  +   H G+ 
Sbjct: 106 KNKRSTS--SAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFALLNKQHPGSS 163

Query: 151 --LGAHGTLANNH 161
             LG H  L ++H
Sbjct: 164 SQLGFHSELGSSH 176

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 59/68 (86%)

Query: 45  ERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGG 104
           ER+ RP   +ALKCPRCDS +TKFCYYNNYS+SQPRYFCK CRRYWT GGTLRN+P+GGG
Sbjct: 49  ERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

Query: 105 CRKNKKVS 112
           CRKNK  S
Sbjct: 109 CRKNKHAS 116

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Zea mays (taxid: 4577)

>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 105/199 (52%), Gaps = 26/199 (13%)

Query: 20  SIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQP 79
           S+H+     SS  + D     +PL   R  PP +Q+L+CPRCDST+TKFCYYNNYSLSQP
Sbjct: 5   SMHQNVMGVSSCSTQDYQNQKKPLSATRPAPP-EQSLRCPRCDSTNTKFCYYNNYSLSQP 63

Query: 80  RYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSMNQNPGSSSHNPTDLQLSF 139
           RYFCK+CRRYWTKGG LRNIP+GG  RK+K+ SS     +S+   P  +    T    SF
Sbjct: 64  RYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSSA---TKSLRTTPEPTM---THDGKSF 117

Query: 140 PEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDFMG 199
           P   F +  N       ++N    +   Y+ + + P             +G S +  F  
Sbjct: 118 PTASFGYNNN------NISNEQMELGLAYALLNKQP-------------LGVSSHLGFGS 158

Query: 200 NNGDMGMVGGLGNLSHHHQ 218
           +   M M G  G  SH  +
Sbjct: 159 SQSPMAMDGVYGTTSHQME 177

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query: 45  ERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGG 104
           ER+ RP  DQA+ CPRC+ST+TKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRNIPVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 105 CRKNKK 110
            RKNK+
Sbjct: 102 SRKNKR 107

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 74/112 (66%), Gaps = 18/112 (16%)

Query: 54  QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSS 113
           +A  CPRC+S +TKFCYYNNYSLSQPRYFCK+CRRYWTKGGTLRN+PVGGGCR+NK+ SS
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query: 114 KKSNDQSMN----------QNPGSSSHNPT--------DLQLSFPEMQFSHL 147
              +  + N          QNP  +   P+        DL L+F  +Q  HL
Sbjct: 106 SAFSKNNNNKSINFHTDPLQNPLITGMPPSSFGYDHSIDLNLAFATLQKHHL 157

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 6/90 (6%)

Query: 45  ERRLRPP------HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRN 98
           +RR+R        H Q+LKCPRC+S +TKFCYYNNY+LSQPR+FCK CRRYWTKGG LRN
Sbjct: 34  DRRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRN 93

Query: 99  IPVGGGCRKNKKVSSKKSNDQSMNQNPGSS 128
           +PVGGGCRK K+  +K+    S    P ++
Sbjct: 94  VPVGGGCRKAKRSKTKQVPSSSSADKPTTT 123

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1

 Score =  117 bits (294), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 56/59 (94%)

Query: 53  DQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV 111
           + ALKCPRC+ST+TKFCY+NNYSL+QPR+FCKTCRRYWT+GG LRN+PVGGGCR+N++ 
Sbjct: 86  EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRT 144

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 58/65 (89%)

Query: 50  PPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNK 109
           P  + AL CPRCDST+TKFCY+NNYSL+QPR+FCKTCRRYWT+GG+LRN+PVGGG R+NK
Sbjct: 70  PLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNK 129

Query: 110 KVSSK 114
           +  S+
Sbjct: 130 RSKSR 134

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JQ8|DOF18_ARATH Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 44  MERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGG 103
           +ER+ RP  DQAL CPRC+S +TKFCYYNNYSL+QPRYFCK CRRYWT GG+LRNIPVGG
Sbjct: 37  VERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGG 96

Query: 104 GC 105
           G 
Sbjct: 97  GV 98

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
225457042	308	PREDICTED: dof zinc finger protein DOF5.	0.974	0.980	0.774	1e-135
297733787	318	unnamed protein product [Vitis vinifera]	0.970	0.946	0.773	1e-134
224119358	312	f-box family protein [Populus trichocarp	0.977	0.971	0.792	1e-132
224133542	314	f-box family protein [Populus trichocarp	0.977	0.964	0.775	1e-127
147780102	321	hypothetical protein VITISV_005894 [Viti	0.922	0.890	0.769	1e-127
255540661	326	zinc finger protein, putative [Ricinus c	0.941	0.895	0.728	1e-120
302398773	327	DOF domain class transcription factor [M	0.967	0.917	0.663	1e-102
356508677	344	PREDICTED: dof zinc finger protein DOF5.	0.980	0.883	0.644	3e-98
357461957	378	Dof zinc finger protein [Medicago trunca	0.941	0.772	0.671	8e-96
356513607	330	PREDICTED: dof zinc finger protein DOF5.	0.977	0.918	0.610	1e-93

>gi|225457042|ref|XP_002279622.1| PREDICTED: dof zinc finger protein DOF5.6 [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/315 (77%), Positives = 271/315 (86%), Gaps = 13/315 (4%)

Query: 2   MGLTSLQVCMDSSDWLQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRC 61
           MGLT L VCMDSS+WLQG+ HEE+G+DSSSPSGDMLTCSRPL+ERRLRP HDQALKCPRC
Sbjct: 1   MGLTFLPVCMDSSEWLQGTAHEENGMDSSSPSGDMLTCSRPLIERRLRPQHDQALKCPRC 60

Query: 62  DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSM 121
           DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV+SKKSND S+
Sbjct: 61  DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVASKKSNDHSI 120

Query: 122 NQNPGSSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFM 181
           NQNPG SSHNPTDL LSFPE+QFSHL N+LG+HG L  NH+FM++KY+ MLEN RPIDFM
Sbjct: 121 NQNPGPSSHNPTDLHLSFPEVQFSHLSNLLGSHGGLG-NHSFMESKYNGMLENARPIDFM 179

Query: 182 ENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGG 241
           E K EAIVGSSRN+DFMG N ++GM GGLG++SH    GL PN H LCSPFG++LDG GG
Sbjct: 180 EGKFEAIVGSSRNHDFMG-NCELGM-GGLGDMSH---GGLAPNFHGLCSPFGVTLDGNGG 234

Query: 242 TFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVG-----YLGNLGSSWSG 296
            F+D CQR+MLPY+ N  QNA+DVKPN KLLSLDWQDQ CSD G     YL +LG SW+G
Sbjct: 235 NFMDTCQRLMLPYEGNVEQNAMDVKPNTKLLSLDWQDQGCSDAGKDSFVYLNSLG-SWNG 293

Query: 297 MM-NGYGSSTTNSLV 310
           MM NGYG STTN LV
Sbjct: 294 MMSNGYGPSTTNPLV 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733787|emb|CBI15034.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/314 (77%), Positives = 270/314 (85%), Gaps = 13/314 (4%)

Query: 2   MGLTSLQVCMDSSDWLQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRC 61
           MGLT L VCMDSS+WLQG+ HEE+G+DSSSPSGDMLTCSRPL+ERRLRP HDQALKCPRC
Sbjct: 1   MGLTFLPVCMDSSEWLQGTAHEENGMDSSSPSGDMLTCSRPLIERRLRPQHDQALKCPRC 60

Query: 62  DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSM 121
           DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV+SKKSND S+
Sbjct: 61  DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVASKKSNDHSI 120

Query: 122 NQNPGSSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFM 181
           NQNPG SSHNPTDL LSFPE+QFSHL N+LG+HG L  NH+FM++KY+ MLEN RPIDFM
Sbjct: 121 NQNPGPSSHNPTDLHLSFPEVQFSHLSNLLGSHGGLG-NHSFMESKYNGMLENARPIDFM 179

Query: 182 ENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGG 241
           E K EAIVGSSRN+DFMG N ++GM GGLG++SH    GL PN H LCSPFG++LDG GG
Sbjct: 180 EGKFEAIVGSSRNHDFMG-NCELGM-GGLGDMSH---GGLAPNFHGLCSPFGVTLDGNGG 234

Query: 242 TFIDGCQRIMLPYDANEVQNAIDVKPNAKLLSLDWQDQSCSDVG-----YLGNLGSSWSG 296
            F+D CQR+MLPY+ N  QNA+DVKPN KLLSLDWQDQ CSD G     YL +LG SW+G
Sbjct: 235 NFMDTCQRLMLPYEGNVEQNAMDVKPNTKLLSLDWQDQGCSDAGKDSFVYLNSLG-SWNG 293

Query: 297 MM-NGYGSSTTNSL 309
           MM NGYG STTN L
Sbjct: 294 MMSNGYGPSTTNPL 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119358|ref|XP_002318052.1| f-box family protein [Populus trichocarpa] gi|222858725|gb|EEE96272.1| f-box family protein [Populus trichocarpa]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/318 (79%), Positives = 277/318 (87%), Gaps = 15/318 (4%)

Query: 2   MGLTSLQVCMDSSDWLQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRC 61
           MGLTSLQVCMDSSDWLQG+I++ESG+DSSSPSGDMLTCSRPL+ERRLRPPHDQALKCPRC
Sbjct: 1   MGLTSLQVCMDSSDWLQGTINDESGMDSSSPSGDMLTCSRPLIERRLRPPHDQALKCPRC 60

Query: 62  DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSM 121
           DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRK  K  SKKSNDQS+
Sbjct: 61  DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRK-NKKVSKKSNDQSV 119

Query: 122 NQ-NPG-SSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYS-AMLENPRPI 178
           NQ NPG SSSHNPTDL LSFPE+Q SHL +ILG+ GT+A + NFMD+KY+  MLENPRPI
Sbjct: 120 NQINPGSSSSHNPTDLHLSFPEVQLSHLNSILGSQGTIATS-NFMDSKYNIGMLENPRPI 178

Query: 179 DFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDG 238
           DFM++KLEA+VGSSRNYDFMG NGD+GMV GLG+ SHHH  GL PN  ++CS FGMSLDG
Sbjct: 179 DFMDSKLEALVGSSRNYDFMG-NGDLGMVSGLGDTSHHH--GLAPNFSDICSSFGMSLDG 235

Query: 239 TGGTFIDGCQRIMLPY-DANEVQNAIDVKPNAKLLSLDWQDQSCSD-----VGYLGNLGS 292
             GTF++ CQR+MLPY   N  QNAIDVKPN KLLSLDWQDQ CSD      GYL NLG 
Sbjct: 236 NSGTFMETCQRLMLPYGQGNNDQNAIDVKPNTKLLSLDWQDQGCSDGGKDTFGYLNNLG- 294

Query: 293 SWSGMMNGYGSSTTNSLV 310
           SW+GMMNGYGSSTTN+LV
Sbjct: 295 SWTGMMNGYGSSTTNTLV 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133542|ref|XP_002321600.1| f-box family protein [Populus trichocarpa] gi|222868596|gb|EEF05727.1| f-box family protein [Populus trichocarpa]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/320 (77%), Positives = 273/320 (85%), Gaps = 17/320 (5%)

Query: 2   MGLTSLQVCMDSSDWLQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRC 61
           MGL SLQVCMDSSDWLQG+I+EESG+DSSSPSGDMLTCSRPL+ERRLRPPHDQALKCPRC
Sbjct: 1   MGLNSLQVCMDSSDWLQGTINEESGMDSSSPSGDMLTCSRPLIERRLRPPHDQALKCPRC 60

Query: 62  DSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSM 121
           DS HTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRK  K  SKKSNDQS+
Sbjct: 61  DSAHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRK-NKKVSKKSNDQSV 119

Query: 122 NQ-NPG-SSSHNPTDLQLSFP-EMQFSHLGNILGAHGTLANNHNFMDNKYS-AMLENPRP 177
           NQ N G SSSHNPTDL LSFP ++Q SHL NILG+  TLA N NFM++KY+  MLENPRP
Sbjct: 120 NQINTGSSSSHNPTDLHLSFPDQVQLSHLHNILGSQETLA-NPNFMESKYNIGMLENPRP 178

Query: 178 IDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLD 237
           +DFM++K EA+VGSSRNYDFMG NGD+GMV GLG++SHHH  GL PN    CSPFGMSLD
Sbjct: 179 VDFMDSKFEALVGSSRNYDFMG-NGDLGMVSGLGDMSHHH--GLAPNYSGYCSPFGMSLD 235

Query: 238 GTGGTFIDGCQRIMLPYDA--NEVQNAIDVKPNAKLLSLDWQDQSCSDV-----GYLGNL 290
           G  G+F++ CQR+MLPYD   +  QN IDVKPN KLLSLDWQDQ CSDV     GYL NL
Sbjct: 236 GNSGSFMETCQRLMLPYDQGNDHDQNPIDVKPNTKLLSLDWQDQGCSDVGKDTFGYLNNL 295

Query: 291 GSSWSGMMNGYGSSTTNSLV 310
           G SW+GMMNGYGSSTTN+LV
Sbjct: 296 G-SWTGMMNGYGSSTTNTLV 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780102|emb|CAN73290.1| hypothetical protein VITISV_005894 [Vitis vinifera]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/299 (76%), Positives = 256/299 (85%), Gaps = 13/299 (4%)

Query: 18  QGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLS 77
           QG+ HEE+G+DSSSPSGDMLTCSRPL+ERRLRP HDQALKCPRCDSTHTKFCYYNNYSLS
Sbjct: 30  QGTAHEENGMDSSSPSGDMLTCSRPLIERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLS 89

Query: 78  QPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSMNQNPGSSSHNPTDLQL 137
           QPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV+SKKSND S+NQNPG SSHNPTDL L
Sbjct: 90  QPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVASKKSNDHSINQNPGPSSHNPTDLHL 149

Query: 138 SFPEMQFSHLGNILGAHGTLANNHNFMDNKYSAMLENPRPIDFMENKLEAIVGSSRNYDF 197
           SFPE+QFSHL N+LG+HG L  NH+FM++KY+ MLEN RPIDFME K EAIVGSSRN+DF
Sbjct: 150 SFPEVQFSHLSNLLGSHGGLG-NHSFMESKYNGMLENARPIDFMEGKFEAIVGSSRNHDF 208

Query: 198 MGNNGDMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDGTGGTFIDGCQRIMLPYDAN 257
           MG N ++GM GGLG++SH    GL PN H LCSPFG++LD  GG F+D CQR+MLPY+ N
Sbjct: 209 MG-NCELGM-GGLGDMSH---GGLAPNFHGLCSPFGVTLDXNGGNFMDTCQRLMLPYEGN 263

Query: 258 EVQNAIDVKPNAKLLSLDWQDQSCSDVG-----YLGNLGSSWSGMM-NGYGSSTTNSLV 310
             QNA+DVKPN KLLSLDWQDQ CSD G     YL +LG SW+GMM NGYG STTN LV
Sbjct: 264 VEQNAMDVKPNTKLLSLDWQDQGCSDAGKDSFVYLNSLG-SWNGMMSNGYGPSTTNPLV 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540661|ref|XP_002511395.1| zinc finger protein, putative [Ricinus communis] gi|223550510|gb|EEF51997.1| zinc finger protein, putative [Ricinus communis]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/321 (72%), Positives = 260/321 (80%), Gaps = 29/321 (9%)

Query: 17  LQGSIHEESGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSL 76
           L G+IHEE+G+DSSSPSGDMLTCSRPL+ERRLRPPHDQALKCPRCDSTHTKFCYYNNYSL
Sbjct: 8   LSGTIHEETGMDSSSPSGDMLTCSRPLIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSL 67

Query: 77  SQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSND---QSMNQN---PGSSSH 130
           SQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV+ K +++   Q +NQN     SS H
Sbjct: 68  SQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVAKKSNSNEHHQPINQNNLGSSSSHH 127

Query: 131 NPTDLQLSFP-EMQFSHLGNILGAHGTLANNHNFMDNKYS-AMLENPRPIDFMENKLEAI 188
           NPTDL LSFP ++QFSHL NIL   GTLA N  FM++KYS  MLENPRPIDFME+KLEAI
Sbjct: 128 NPTDLHLSFPDQVQFSHLNNILNTQGTLA-NPTFMESKYSIGMLENPRPIDFMESKLEAI 186

Query: 189 VGS---SRNYDFMGNNGDMGMVGGLGN------LSHHHQEGLTPNVHNLCSPFGMSLDGT 239
           VGS   SRNYDFMGN+ DMGMV GLG+        HHH +GL PN H LCSPFGMS+DG+
Sbjct: 187 VGSSSTSRNYDFMGNS-DMGMVSGLGDQINHHHHHHHHHQGLAPNYHGLCSPFGMSMDGS 245

Query: 240 GGTFIDGCQRIMLPYD--ANEVQNAIDVKPNAKLLSLDWQD--QSCS------DVGYLGN 289
            GTF++ CQR+MLPYD   N+ QN IDVKPNAKLLSL+WQ+  Q CS        GYL N
Sbjct: 246 NGTFMETCQRLMLPYDHQGNDEQNTIDVKPNAKLLSLEWQEQGQGCSHDGGKDTFGYLNN 305

Query: 290 LGSSWSGMMNGYGSSTTNSLV 310
           LGSSW+GMMNGYGSSTTN LV
Sbjct: 306 LGSSWTGMMNGYGSSTTNPLV 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398773|gb|ADL36681.1| DOF domain class transcription factor [Malus x domestica]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/336 (66%), Positives = 251/336 (74%), Gaps = 36/336 (10%)

Query: 2   MGLTSLQVCMDSSDWLQGSIHEESGLDSSSP-SGDMLTCSRPLMERRLRPPHDQALKCPR 60
           MG  SLQVCMDSSDWLQG+I E+S +DSSSP SGDMLTCSRPL+ERRLRP H+QALKCPR
Sbjct: 1   MGHNSLQVCMDSSDWLQGTIREDSPMDSSSPLSGDMLTCSRPLVERRLRPQHEQALKCPR 60

Query: 61  CDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQS 120
           CDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKK NDQS
Sbjct: 61  CDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKPNDQS 120

Query: 121 ----MNQ------NPGSSSHNPTDLQLSFP-EMQFSHLGNILGAHGTLANNHNFMDNKYS 169
               MNQ      +  S SH PTDL LSFP +MQFSHL N++   G+  N  +FMD    
Sbjct: 121 PSSLMNQHHHPGSSSSSISHIPTDLHLSFPDQMQFSHLNNLM--LGSNMNPSSFMD---- 174

Query: 170 AMLENPRPIDFMENKLEAIVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLT--PNVHN 227
             + NPRPIDFME+KLEAIVG++RNYDFMG   D+GM+GG GN       GL    + H 
Sbjct: 175 --ISNPRPIDFMESKLEAIVGTARNYDFMGGGADLGMMGGYGNNMGGVSHGLEHQSSFHG 232

Query: 228 LC-SPFGM-SLDGTGGTFIDGCQRIMLPYDANEVQ-----NAIDVKPNAKLLSLDWQDQS 280
           +C SPFGM S+DG  G F+D CQR+MLPYD    +     NA+DVKPN KLLSL+WQDQ+
Sbjct: 233 ICSSPFGMSSIDGQNGNFMDSCQRLMLPYDQANHEDHHQINAMDVKPNTKLLSLEWQDQA 292

Query: 281 -CSDV-----GYLGNLGSSWSGMMNGYGSSTTNSLV 310
            CSD+     GYL  LG SWS +MN Y  STTN LV
Sbjct: 293 GCSDLGKDSFGYLNGLG-SWSNVMNSYAPSTTNPLV 327

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508677|ref|XP_003523081.1| PREDICTED: dof zinc finger protein DOF5.6 [Glycine max]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 225/349 (64%), Positives = 254/349 (72%), Gaps = 45/349 (12%)

Query: 2   MGLTSLQVCMDSSD-WLQGSIHEESGLDSSSPSGDM-LTCSRPLMERRLRPPHDQALKCP 59
           MGL+SL VCMDSSD WLQG+IHEESG+DSSS      LTCSRP++ERRLRPPHDQALKCP
Sbjct: 1   MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCP 60

Query: 60  RCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQ 119
           RCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS+KKSND 
Sbjct: 61  RCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDH 120

Query: 120 SM------NQNPGSSSHNPTDLQL-SFPEMQFSHLGNILGAHGTLANNHNFMDNKYS-AM 171
            +      NQ      H+P DLQL SFP++QFSHL N+LG +     N +FM+ KY   M
Sbjct: 121 QLVNNNNINQTRPPHHHHPKDLQLSSFPDVQFSHLSNLLGTNA----NPSFMEGKYGIGM 176

Query: 172 LENPRPIDF-MENKLEAIVG---SSRNYDFMGNNG-DMGMVG-GLGNL--SHHHQEGLTP 223
           +ENPRPIDF ME+KLE I+G   SSRN+DF GNN   MGM   GLG++  +  HQ GL P
Sbjct: 177 IENPRPIDFMMESKLEGIIGSGSSSRNFDFFGNNDMSMGMASVGLGDMNGATTHQNGLPP 236

Query: 224 NV-HNLCSPFG---MSLD----------GTGGTFIDGCQRIMLPYD-ANEVQNA-IDVKP 267
           N+ H+  S FG   MSLD          G     +D CQR+MLPYD +NE  NA IDVKP
Sbjct: 237 NLYHHGLSAFGGMSMSLDHGNNNNSDNNGANRYLMDSCQRLMLPYDVSNEDHNAQIDVKP 296

Query: 268 NAK-LLSLDWQDQSCSDV-----GYLGNLGSSWSGMMNGYGSSTTNSLV 310
           N K LLSL+WQDQ CSD      GYL   G SW+GMMNGYGSSTT+ LV
Sbjct: 297 NPKQLLSLEWQDQGCSDAGKDSFGYLNGPG-SWTGMMNGYGSSTTHPLV 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461957|ref|XP_003601260.1| Dof zinc finger protein [Medicago truncatula] gi|355490308|gb|AES71511.1| Dof zinc finger protein [Medicago truncatula]

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 215/320 (67%), Positives = 241/320 (75%), Gaps = 28/320 (8%)

Query: 16  WLQGSIHEESGLDSSSP-SGDMLTCSRP--LMERRLRPPHDQALKCPRCDSTHTKFCYYN 72
           WLQG+IH+ESG+DSSSP SGDMLTCSRP  ++ERRLRPPHD +LKCPRCDSTHTKFCYYN
Sbjct: 8   WLQGTIHDESGMDSSSPMSGDMLTCSRPSSMIERRLRPPHDLSLKCPRCDSTHTKFCYYN 67

Query: 73  NYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQSMNQNPGSSSH-- 130
           NYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSND   N N  +  H  
Sbjct: 68  NYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDHLANTNIQNQPHHV 127

Query: 131 -----NPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYS--AMLENPRPIDF-ME 182
                NP DLQLSFP++QFSHL N+ GA+G L  N NFM+NKYS   MLENPRPIDF ME
Sbjct: 128 PSYHQNPKDLQLSFPDVQFSHLSNLFGANGALG-NPNFMENKYSNVGMLENPRPIDFMME 186

Query: 183 NKLEAIVG-SSRNYD-FMGNNG--DMGMVGGLGNLSHHHQEGLTPNVHNLCSPFGMSLDG 238
           NKLE I+G SSRN+D + GN+   +M M  G+G    + Q GL  N H+     GMS +G
Sbjct: 187 NKLEGIIGSSSRNFDNYFGNSDHMNMNMGVGIGGDMMNGQNGLPQNFHHAFG--GMSFEG 244

Query: 239 ----TGGTFIDGCQRIMLPYDAN-EVQNA-IDVKPNAKLLSLDW-QDQSCSDVGYLGNLG 291
                G   +D CQR+MLPYDAN E  NA IDVKPN KLLSL+W QDQ CSD G   + G
Sbjct: 245 GNNNNGAYLMDSCQRLMLPYDANDEDHNASIDVKPNPKLLSLEWQQDQGCSDAGKGQSFG 304

Query: 292 -SSWSGMMNGYGSSTTNSLV 310
             SWSGMMNGYGSSTTN L+
Sbjct: 305 YGSWSGMMNGYGSSTTNPLI 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513607|ref|XP_003525503.1| PREDICTED: dof zinc finger protein DOF5.6-like [Glycine max]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/336 (61%), Positives = 244/336 (72%), Gaps = 33/336 (9%)

Query: 2   MGLTSLQVCMDSSD-WLQGSIHEESGLD-SSSPSGDMLTCSRPLMERRLRPPHDQALKCP 59
           MG +SL VCMDSSD W+QG+IHEE G+D SSSPSG+ML CSRP+ E RLRPP +QALKCP
Sbjct: 1   MGFSSLHVCMDSSDHWMQGTIHEECGVDNSSSPSGEMLPCSRPMTESRLRPPQEQALKCP 60

Query: 60  RCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKSNDQ 119
           RC+STHTKFCYYNNYSLSQPRYFCKTCRRYWT+GGTLRNIPVGGGCRKNKKVS+KK NDQ
Sbjct: 61  RCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNIPVGGGCRKNKKVSTKKHNDQ 120

Query: 120 ---SMNQN---PGSSS-HNPTDLQLSFPEMQFSHLGNILGAH-GTLANNHNFMDNKYS-A 170
              ++NQN   PG S  HN  DLQL + ++QF HL N+LG + G L  N +FM++KY+  
Sbjct: 121 HQPAVNQNQPHPGPSYLHNHKDLQLPYLDVQFPHLNNLLGTNAGALQGNPSFMESKYNMG 180

Query: 171 MLENPRPIDFMENKLEA---IVGSSRNYDFMGNNGDMGMVGGLGNLSHHHQEGLTPNVHN 227
           MLENPRPIDFME++L+    I GS+R+++ +  N DM + GG+G        GL  N   
Sbjct: 181 MLENPRPIDFMESRLDGMSMIRGSTRSFELL-ENSDMSVGGGVGFGDVSGYNGLPLNYQG 239

Query: 228 LCSPF--GMSLDGT---GGTFI-DGCQRIMLPYDA--NEVQNAIDVKPNAKLLSLDWQDQ 279
           L S    GMSLDG+    GT+I D CQR+MLPYD   N +  +IDVKPN KLLSL+WQDQ
Sbjct: 240 LSSSAFGGMSLDGSINNVGTYIMDSCQRLMLPYDGGDNTLNGSIDVKPNPKLLSLEWQDQ 299

Query: 280 SCSD-----VGYLGNLGSSWSGMMNGYGSSTTNSLV 310
            CSD     +GYL   G SW+     YGSST N LV
Sbjct: 300 GCSDAEKLSLGYLNGSG-SWT----AYGSSTANPLV 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2170753	372	HCA2 "HIGH CAMBIAL ACTIVITY2"	0.706	0.588	0.435	3.3e-61
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.445	0.536	0.459	1.4e-31
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.364	0.342	0.491	6.1e-31
TAIR|locus:2134981	342	AT4G24060 [Arabidopsis thalian	0.367	0.333	0.487	2e-30
TAIR|locus:2053175	340	AT2G28810 [Arabidopsis thalian	0.322	0.294	0.524	2.3e-29
TAIR|locus:2181773	399	AT5G02460 [Arabidopsis thalian	0.277	0.215	0.582	6.6e-28
TAIR|locus:2056588	288	AT2G28510 [Arabidopsis thalian	0.348	0.375	0.477	1.7e-27
TAIR|locus:2085697	245	DOF6 "DOF transcription factor	0.390	0.493	0.484	3.5e-27
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.341	0.301	0.532	5.7e-27
TAIR|locus:2026595	339	OBP2 [Arabidopsis thaliana (ta	0.264	0.241	0.597	5.8e-27

TAIR|locus:2170753 HCA2 "HIGH CAMBIAL ACTIVITY2" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.3e-61, Sum P(3) = 3.3e-61
 Identities = 108/248 (43%), Positives = 140/248 (56%)

Query:    29 SSSPSGDMLT-CSRPLME--RRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKT 85
             S+ P    +   +  LM+  RRLRPPHD   KCPRC+STHTKFCYYNNYSLSQPRYFCKT
Sbjct:    43 STRPQASAVAVAAAALMDGGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKT 102

Query:    86 CRRYWTKGGTLRNIPVGGGCRXXXX-XXXXXXXDQSMNQNPGSS-SHNPTDLQL---SFP 140
             CRRYWTKGGTLRNIPVGGGCR              S  + P +  + N +DL     S  
Sbjct:   103 CRRYWTKGGTLRNIPVGGGCRKNKKPSSSNSSSSTSSGKKPSNIVTANTSDLMALAHSHQ 162

Query:   141 EMQ-----FSHLGNILGAHGTLAN-NHNFMDNKYSAML-ENPRPIDFMENKLEAIVGSSR 193
               Q     FSH G ++G++ T  + N  F+++KY  +L ++PRPIDF+++K + ++G   
Sbjct:   163 NYQHSPLGFSHFGGMMGSYSTPEHGNVGFLESKYGGLLSQSPRPIDFLDSKFD-LMGV-- 219

Query:   194 NYDFXXXXXXXXXXXXXXXLSHH----HQEGLTPNVHNLCSPF-GMSL--DGTGGTFID- 245
             N D                 +HH    H  GL  N +N    F G+S   +G GG  +D 
Sbjct:   220 NNDNLVMVNHGSNGDHHHHHNHHMGLNHGVGLNNNNNN--GGFNGISTGGNGNGGGLMDI 277

Query:   246 -GCQRIML 252
               CQR+ML
Sbjct:   278 STCQRLML 285

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010067 "procambium histogenesis" evidence=IMP

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 73/159 (45%), Positives = 88/159 (55%)

Query:    23 EESGLD-SSSPS---GDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQ 78
             E  GL  SS+P+    D    S      R +PP + AL+CPRCDST+TKFCYYNNYSL+Q
Sbjct:    19 EAMGLSYSSNPTPLDNDQKKPSPATAVTRPQPP-ELALRCPRCDSTNTKFCYYNNYSLTQ 77

Query:    79 PRYFCKTCRRYWTKGGTLRNIPVGGGCRXXXXXXXXXXXDQSMNQNPGS----------- 127
             PRYFCK+CRRYWTKGGTLRNIPVGGGCR                  P S           
Sbjct:    78 PRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRSTSSAARSLRTTPEPASHDGKVFSAAGF 137

Query:   128 ---SSHNPTDLQLSFPEMQFSHLGNI--LGAHGTLANNH 161
                S++   DL L+F  +   H G+   LG H  L ++H
Sbjct:   138 NGYSNNEHIDLSLAFALLNKQHPGSSSQLGFHSELGSSH 176

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 61/124 (49%), Positives = 76/124 (61%)

Query:    53 DQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRXXXXXX 112
             + ALKCPRC+ST+TKFCY+NNYSL+QPR+FCKTCRRYWT+GG LRN+PVGGGCR      
Sbjct:    86 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTK 145

Query:   113 XXXXXDQSMNQNPGSSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFMDNKYS-AM 171
                    S N N  +++ N T    SF     S +  IL +H    N  + +    S A 
Sbjct:   146 S-----NSNNNNNSTATSNNT----SFSSGNASTISTILSSHYG-GNQESILSQILSPAR 195

Query:   172 LENP 175
             L NP
Sbjct:   196 LMNP 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2134981 AT4G24060 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 59/121 (48%), Positives = 73/121 (60%)

Query:    45 ERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGG 104
             ER+ RP  DQA+ CPRC+ST+TKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRNIPVGGG
Sbjct:    42 ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query:   105 CRXXXXXXXXXXXDQSMNQNPGSSSHNPTDLQLSFPEMQFSHLGNILGAHGTLANNHNFM 164
              R              ++ N   S+   T   LS       HL + +   G    N  F+
Sbjct:   102 SRKNKRSHSSSS---DISNNHSDSTQPATKKHLSD---HHHHLMS-MSQQGLTGQNPKFL 154

Query:   165 D 165
             +
Sbjct:   155 E 155

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2053175 AT2G28810 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 54/103 (52%), Positives = 69/103 (66%)

Query:    27 LDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTC 86
             +D SS +G      R  + +  +PP + ALKCPRCDS +TKFCY+NNY+L+QPR+FCK C
Sbjct:    68 VDPSSLNGQ--AAERARLAKNSQPP-EGALKCPRCDSANTKFCYFNNYNLTQPRHFCKAC 124

Query:    87 RRYWTKGGTLRNIPVGGGCRXXXXXXXXXXXDQSMNQNPGSSS 129
             RRYWT+GG LRN+PVGGGCR             S +QN  S+S
Sbjct:   125 RRYWTRGGALRNVPVGGGCRRNKKGKSGNSKSSSSSQNKQSTS 167

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2181773 AT5G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 53/91 (58%), Positives = 65/91 (71%)

Query:    21 IHEESGLDSSSPSGDMLTCSRP--LMER-RLR--PPHDQALKCPRCDSTHTKFCYYNNYS 75
             +H  +G    +  G      RP  + ER RL   P  + ALKCPRCDST+TKFCY+NNYS
Sbjct:    55 LHHNNGNGGVAVPGGPGGLIRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYS 114

Query:    76 LSQPRYFCKTCRRYWTKGGTLRNIPVGGGCR 106
             L+QPR+FCK CRRYWT+GG LR++PVGGGCR
Sbjct:   115 LTQPRHFCKACRRYWTRGGALRSVPVGGGCR 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2056588 AT2G28510 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 53/111 (47%), Positives = 67/111 (60%)

Query:    54 QALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRXXXXXXX 113
             +A  CPRC+S +TKFCYYNNYSLSQPRYFCK+CRRYWTKGGTLRN+PVGGGCR       
Sbjct:    46 EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query:   114 XXXXDQSMNQNPGSSS---HNPTDLQLSFPEMQFSHLGNILGAHGTLANNH 161
                   + N++    +    NP    +      + H  ++  A  TL  +H
Sbjct:   106 SAFSKNNNNKSINFHTDPLQNPLITGMPPSSFGYDHSIDLNLAFATLQKHH 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2085697 DOF6 "DOF transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 64/132 (48%), Positives = 80/132 (60%)

Query:    20 SIHEE-SGLDSSSPSGDMLTCSRPLMERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQ 78
             S+H+   G+ S S   D     +PL   R  PP +Q+L+CPRCDST+TKFCYYNNYSLSQ
Sbjct:     5 SMHQNVMGVSSCSTQ-DYQNQKKPLSATRPAPP-EQSLRCPRCDSTNTKFCYYNNYSLSQ 62

Query:    79 PRYFCKTCRRYWTKGGTLRNIPVGGGCRXXXXXXXXXXXDQSMNQNPGSS-SHNPTDLQL 137
             PRYFCK+CRRYWTKGG LRNIP+GG  R            +S+   P  + +H+      
Sbjct:    63 PRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSSAT---KSLRTTPEPTMTHDGK---- 115

Query:   138 SFPEMQFSHLGN 149
             SFP   F +  N
Sbjct:   116 SFPTASFGYNNN 127

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 58/109 (53%), Positives = 68/109 (62%)

Query:    44 MERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGG 103
             +ER+ RP  DQAL CPRC+S +TKFCYYNNYSL+QPRYFCK CRRYWT GG+LRNIPVGG
Sbjct:    37 VERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGG 96

Query:   104 GCRXXXXXXXXXXXDQSMNQNPGSSSHNPTDLQLSFPEMQFSHLGNILG 152
             G R             S + +  SSS  P     + P     HL   +G
Sbjct:    97 GVRKNKRSSSNSS---SSSPSSSSSSKKPLFANNNTPTPPLPHLNPKIG 142

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026595 OBP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 49/82 (59%), Positives = 58/82 (70%)

Query:    50 PPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRXXX 109
             PP    LKCPRCDS++TKFCYYNNY+L+QPR+FCK CRRYWT+GG LRN+PVGGGCR   
Sbjct:    79 PPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNN 138

Query:   110 XXXXXXXXDQSMNQNPGSSSHN 131
                       S + +  SSS N
Sbjct:   139 KKGKNGNLKSSSSSSKQSSSVN 160

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0003002 "regionalization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016092001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (308 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	6e-42

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  138 bits (350), Expect = 6e-42
 Identities = 49/63 (77%), Positives = 55/63 (87%)

Query: 51  PHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKK 110
             D+ALKCPRCDS +TKFCYYNNY+L+QPRYFCK CRRYWT GG LRN+PVGGG RKNK+
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 111 VSS 113
            SS
Sbjct: 61  SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	93.38
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	93.06
COG3677	129	Transposase and inactivated derivatives [DNA repli	92.74
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	91.79
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	89.13
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	86.63

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=2.9e-37  Score=234.13  Aligned_cols=62  Identities=82%  Similarity=1.625  Sum_probs=59.3

Q ss_pred             CCCCcCCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccCCCCcccCCCCCC
Q 021633           52 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSS  113 (310)
Q Consensus        52 ~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~GGtLRNVPVGGG~RKnkr~ss  113 (310)
                      ++++++||||+|.+|||||||||+++||||||++|+||||+||+|||||||||+||+|++++
T Consensus         2 ~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    2 PEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            46789999999999999999999999999999999999999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=93.38  E-value=0.032  Score=48.12  Aligned_cols=34  Identities=26%  Similarity=0.821  Sum_probs=27.1

Q ss_pred             CcCCCCCCCCCceeeeeccc--CCCCCccccccccccc
Q 021633           55 ALKCPRCDSTHTKFCYYNNY--SLSQPRYFCKTCRRYW   90 (310)
Q Consensus        55 ~~~CPRC~S~nTKFcYyNNy--~~~QPR~fCksCrRyW   90 (310)
                      ...||||.|.+|+..  +.+  +.++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~~--s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTIT--SIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEee--cCCCChhhHHHhhhhhhCCcH
Confidence            589999999999964  566  4457779999998644

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=93.06  E-value=0.085  Score=37.00  Aligned_cols=27  Identities=44%  Similarity=1.009  Sum_probs=22.1

Q ss_pred             cCCCCCCCCCceeeeecccCCCCCccccccccc
Q 021633           56 LKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRR   88 (310)
Q Consensus        56 ~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrR   88 (310)
                      ..||+|.+.  +...+.+    +.+|.|+.|++
T Consensus        19 ~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   19 FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            679999998  6655555    78999999986

It may be a zinc-binding beta ribbon domain that could bind DNA.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=92.74  E-value=0.076  Score=44.93  Aligned_cols=35  Identities=31%  Similarity=0.742  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCceeeeecccCCCCCccccccccccccc
Q 021633           56 LKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTK   92 (310)
Q Consensus        56 ~~CPRC~S~nTKFcYyNNy~~~QPR~fCksCrRyWT~   92 (310)
                      ..||+|.+.+  +-=+.-+.....||.|++|++-||.
T Consensus        31 ~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          31 VNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             CcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            7899999999  2234555555999999999999874

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=91.79  E-value=0.11  Score=35.98  Aligned_cols=31  Identities=48%  Similarity=0.879  Sum_probs=21.6

Q ss_pred             CcCCCCCCCCCceeeeecccCCC-CCcccccccc
Q 021633           55 ALKCPRCDSTHTKFCYYNNYSLS-QPRYFCKTCR   87 (310)
Q Consensus        55 ~~~CPRC~S~nTKFcYyNNy~~~-QPR~fCksCr   87 (310)
                      .+.||+|.+++.-  |=|-.+.. ..||+|++|+
T Consensus         5 ~v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            3789999998721  23344433 5899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=89.13  E-value=0.42  Score=33.22  Aligned_cols=37  Identities=27%  Similarity=0.801  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCceeeeecccCCCCC---ccccccccccccc
Q 021633           56 LKCPRCDSTHTKFCYYNNYSLSQP---RYFCKTCRRYWTK   92 (310)
Q Consensus        56 ~~CPRC~S~nTKFcYyNNy~~~QP---R~fCksCrRyWT~   92 (310)
                      .+||+|...+.-|-..+-.+...|   -|.|..|...|.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999977777655555555555   4999999999964

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.63  E-value=0.55  Score=32.40  Aligned_cols=36  Identities=31%  Similarity=0.849  Sum_probs=24.1

Q ss_pred             cCCCCCCCCCceeeeecccCCCCCc---ccccccccccc
Q 021633           56 LKCPRCDSTHTKFCYYNNYSLSQPR---YFCKTCRRYWT   91 (310)
Q Consensus        56 ~~CPRC~S~nTKFcYyNNy~~~QPR---~fCksCrRyWT   91 (310)
                      .+||.|...+.-|=-.+..+...|-   |.|.+|..-|+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~wr   39 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRWR   39 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCeeC
Confidence            3799999987766545555555443   89999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	82.11
1tfi_A	50	Transcriptional elongation factor SII; transcripti	80.95

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=82.11  E-value=0.89  Score=31.90  Aligned_cols=38  Identities=21%  Similarity=0.675  Sum_probs=25.4

Q ss_pred             CcCCCCCCCCCceeeeecccCCCCC---ccccccccccccc
Q 021633           55 ALKCPRCDSTHTKFCYYNNYSLSQP---RYFCKTCRRYWTK   92 (310)
Q Consensus        55 ~~~CPRC~S~nTKFcYyNNy~~~QP---R~fCksCrRyWT~   92 (310)
                      ..+||+|...+..|--.+-.+...|   .|.|..|.--|+.
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            4789999984444333333333344   3999999999976

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=80.95  E-value=1.2  Score=31.39  Aligned_cols=37  Identities=19%  Similarity=0.643  Sum_probs=27.4

Q ss_pred             CcCCCCCCCCCceeeeecccCCCCCc---ccccccccccc
Q 021633           55 ALKCPRCDSTHTKFCYYNNYSLSQPR---YFCKTCRRYWT   91 (310)
Q Consensus        55 ~~~CPRC~S~nTKFcYyNNy~~~QPR---~fCksCrRyWT   91 (310)
                      ..+||+|...+..|--.+..+...|-   |.|..|..-|.
T Consensus         9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            47899999877776555555554453   89999998885

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	88.51
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	88.12

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.15  Score=34.92  Aligned_cols=37  Identities=19%  Similarity=0.650  Sum_probs=30.6

Q ss_pred             CCcCCCCCCCCCceeeeecccCCCCCc---cccccccccc
Q 021633           54 QALKCPRCDSTHTKFCYYNNYSLSQPR---YFCKTCRRYW   90 (310)
Q Consensus        54 ~~~~CPRC~S~nTKFcYyNNy~~~QPR---~fCksCrRyW   90 (310)
                      ...+||+|.+.+..|--.+..+...|-   +.|..|..-|
T Consensus         8 ~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            347999999998887777777777776   8999999988

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.12  E-value=0.18  Score=36.71  Aligned_cols=40  Identities=20%  Similarity=0.548  Sum_probs=30.8

Q ss_pred             cCCCCCCCCCceeeeecccCCCCCc---ccccccccccccCcc
Q 021633           56 LKCPRCDSTHTKFCYYNNYSLSQPR---YFCKTCRRYWTKGGT   95 (310)
Q Consensus        56 ~~CPRC~S~nTKFcYyNNy~~~QPR---~fCksCrRyWT~GGt   95 (310)
                      ..||+|...+.-|-..+-.+..-|-   |.|..|.-.|+.-.+
T Consensus        24 ~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          24 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             CCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            6899999887777666665544443   999999999998654