Citrus Sinensis ID: 021637

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLASTGETETTETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccEEEEEEccEEccccEEEEEccc
ccEEEEcccccccccccccccccHccccccccEcEEEEccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccHHHHHHccccccHHHcccHHHHHHHccHcccHEHHccccc
matviktppfhasslpatraapislkspkpicLSFRQRLIstsrlyhrsnslrfvsvqslrfikfsplastgetettetqeeiqepqieessdgavgiedgtsdddssgaasddtsdaeeaptSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSlgvvpvetvgnpfdplvkprvglkISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS
matviktppfhasslpatraapislkspkpICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFsplastgetettetqeeiqepqieessdgavGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLksfedekidlERKVVnlseelsaerarilrisadfdnfrkrtEKERLslvtnaqgeVMERLLQVLDNFERAKTQikvqtegeekinNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKtwttfltrtks
MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLASTGetettetqeeiqepqieeSSDGAVGIEdgtsdddssgaasddtsdaeeaPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS
*****************************PICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFS*********************************************************************************************IDLERKVVNL*******RARILRISADFDNFR*******LSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLT****
********PFHA*****************************************************************************************************************************************************************SAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT***********INNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRT**
MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLA**********************SDGAVGIED********************APTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS
*ATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRL**RSNSLRFVSVQSLRFIKFSPLAS*****************************************************SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTR***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
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MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLASTGETETTETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILRISADFDNFRKRTEKERLSLVTNAQGEVxxxxxxxxxxxxxxxxxxxxxTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
A5GHN3240 Protein GrpE OS=Synechoco yes no 0.509 0.658 0.365 8e-22
Q59978249 Protein GrpE OS=Synechocy N/A no 0.322 0.401 0.48 2e-21
Q8DJB3252 Protein GrpE OS=Thermosyn yes no 0.519 0.638 0.360 3e-21
Q59984207 Protein GrpE OS=Synechoco yes no 0.325 0.487 0.485 3e-20
B7KLH9286 Protein GrpE OS=Cyanothec yes no 0.380 0.412 0.426 1e-19
Q8YUA7248 Protein GrpE OS=Nostoc sp yes no 0.351 0.439 0.431 1e-19
Q3MG83248 Protein GrpE OS=Anabaena yes no 0.351 0.439 0.431 2e-19
A2C5L7237 Protein GrpE OS=Prochloro yes no 0.345 0.451 0.434 4e-19
Q7NDP1196 Protein GrpE OS=Gloeobact yes no 0.338 0.535 0.383 6e-19
Q114R5242 Protein GrpE OS=Trichodes yes no 0.316 0.404 0.469 1e-18
>sp|A5GHN3|GRPE_SYNPW Protein GrpE OS=Synechococcus sp. (strain WH7803) GN=grpE PE=3 SV=1 Back     alignment and function desciption
 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 6/164 (3%)

Query: 112 SDDTSDAEEAPTSFI------METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERK 165
           S D S  E+ P   +      +ET     E  +++D   AAE+     + E     LER+
Sbjct: 2   SGDASTPEQDPAQVVADGQQPVETPNDPVETPSASDPGSAAEVSPQTGNNEARLEQLERE 61

Query: 166 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT 225
              L +E    R + +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ 
Sbjct: 62  HTTLRDEHDVLRGQYMRIAADFDNFRKRQSRDQDDLKIQLTCSTLSEILPVVDNFERARQ 121

Query: 226 QIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDP 269
           Q+  Q E  + ++ SYQ +YKQLV++L  LGV P+  VG  FDP
Sbjct: 122 QLDPQGEEAQALHRSYQGLYKQLVDVLKQLGVAPMRVVGQEFDP 165
Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with dnaK and grpE. It is the nucleotide exchange factor for dnaK and may function as a thermosensor. Unfolded proteins bind initially to dnaJ; upon interaction with the dnaJ-bound protein, dnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from dnaK; ATP binding to dnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between dnaJ, dnaK and grpE are required for fully efficient folding.
Synechococcus sp. (strain WH7803) (taxid: 32051)
>sp|Q59978|GRPE_SYNY3 Protein GrpE OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q8DJB3|GRPE_THEEB Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q59984|GRPE_SYNE7 Protein GrpE OS=Synechococcus elongatus (strain PCC 7942) GN=grpE PE=3 SV=2 Back     alignment and function description
>sp|B7KLH9|GRPE_CYAP7 Protein GrpE OS=Cyanothece sp. (strain PCC 7424) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q8YUA7|GRPE_NOSS1 Protein GrpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q3MG83|GRPE_ANAVT Protein GrpE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|A2C5L7|GRPE_PROM3 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9303) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q7NDP1|GRPE_GLOVI Protein GrpE OS=Gloeobacter violaceus (strain PCC 7421) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q114R5|GRPE_TRIEI Protein GrpE OS=Trichodesmium erythraeum (strain IMS101) GN=grpE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
147780431369 hypothetical protein VITISV_011922 [Viti 0.948 0.796 0.567 1e-83
296085860290 unnamed protein product [Vitis vinifera] 0.906 0.968 0.6 2e-83
224126029342 predicted protein [Populus trichocarpa] 0.932 0.845 0.61 2e-81
225439145338 PREDICTED: protein grpE-like [Vitis vini 0.832 0.763 0.628 4e-81
255580248356 Protein grpE, putative [Ricinus communis 0.954 0.831 0.573 8e-75
356504248335 PREDICTED: protein grpE-like [Glycine ma 0.835 0.773 0.577 4e-72
356571814338 PREDICTED: protein grpE-like [Glycine ma 0.835 0.766 0.577 2e-71
357508959335 Protein grpE [Medicago truncatula] gi|35 0.903 0.835 0.531 9e-70
449453123335 PREDICTED: protein GrpE-like [Cucumis sa 0.929 0.859 0.536 3e-68
449488273335 PREDICTED: protein GrpE-like [Cucumis sa 0.929 0.859 0.536 3e-68
>gi|147780431|emb|CAN65730.1| hypothetical protein VITISV_011922 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 185/326 (56%), Positives = 223/326 (68%), Gaps = 32/326 (9%)

Query: 1   MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRL-ISTSRLYHRSNSLRFVSVQS 59
           MAT+++ P F A   P      I  +SPK   L   +R  ++ SRL   ++SLRF  +  
Sbjct: 1   MATLLRAP-FTAP--PPQSLTSICTQSPKAFHLPLTRRCALNASRL---TSSLRFSPILH 54

Query: 60  LRFIKFSPLASTGE-TETTETQE-EIQEP-------------------QIEESSDGAVG- 97
           +RF++F P AS GE TET E Q+ EI+ P                   Q +E+SDG +G 
Sbjct: 55  IRFLRFDPFASNGEATETQEVQDSEIEYPLREKYGEEKEEGGDRTLDNQPKENSDGYIGG 114

Query: 98  IEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFED 157
            ED TSD D   A   D  +AEE P S I+  L+SYKEAL SND++KAAEIEA +K  ED
Sbjct: 115 AEDATSDSD---APDSDAPNAEEEPASGIIVALRSYKEALVSNDESKAAEIEAFIKFIED 171

Query: 158 EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVL 217
           EKIDLE+KV  LSEELS+++ RILRISADFDNFRKRT++ERLSLVTNAQGEV+E LL VL
Sbjct: 172 EKIDLEKKVAALSEELSSDKERILRISADFDNFRKRTDRERLSLVTNAQGEVLENLLPVL 231

Query: 218 DNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGL 277
           DNFERAK QIKV+TEGEEKINNSYQSIYKQ VEILGSLGV PVET+GNPFDPLV  R G 
Sbjct: 232 DNFERAKAQIKVETEGEEKINNSYQSIYKQFVEILGSLGVTPVETIGNPFDPLVSFRAGS 291

Query: 278 KISRVLDEFSQILNQVCSGFVKTWTT 303
           K S VLDE S++L Q     ++  +T
Sbjct: 292 KFSLVLDELSRMLYQFHEAIMREDST 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085860|emb|CBI31184.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126029|ref|XP_002319738.1| predicted protein [Populus trichocarpa] gi|222858114|gb|EEE95661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439145|ref|XP_002267243.1| PREDICTED: protein grpE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580248|ref|XP_002530954.1| Protein grpE, putative [Ricinus communis] gi|223529469|gb|EEF31426.1| Protein grpE, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356504248|ref|XP_003520909.1| PREDICTED: protein grpE-like [Glycine max] Back     alignment and taxonomy information
>gi|356571814|ref|XP_003554067.1| PREDICTED: protein grpE-like [Glycine max] Back     alignment and taxonomy information
>gi|357508959|ref|XP_003624768.1| Protein grpE [Medicago truncatula] gi|355499783|gb|AES80986.1| Protein grpE [Medicago truncatula] Back     alignment and taxonomy information
>gi|449453123|ref|XP_004144308.1| PREDICTED: protein GrpE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488273|ref|XP_004157987.1| PREDICTED: protein GrpE-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2175926326 EMB1241 "embryo defective 1241 0.906 0.861 0.49 1.8e-55
TAIR|locus:2035962279 AT1G36390 [Arabidopsis thalian 0.541 0.602 0.408 2.9e-32
TIGR_CMR|CHY_0414194 CHY_0414 "grpE protein" [Carbo 0.441 0.706 0.319 2.6e-15
TIGR_CMR|BA_4540188 BA_4540 "GrpE protein" [Bacill 0.412 0.680 0.291 6.4e-13
TIGR_CMR|CJE_0849175 CJE_0849 "co-chaperone protein 0.370 0.657 0.313 2.7e-08
TIGR_CMR|GSU_0032200 GSU_0032 "GrpE protein" [Geoba 0.416 0.645 0.300 3.8e-06
UNIPROTKB|P09372197 grpE [Escherichia coli K-12 (t 0.412 0.649 0.273 8.4e-06
TIGR_CMR|DET_1400187 DET_1400 "co-chaperone protein 0.361 0.598 0.275 2.7e-05
TIGR_CMR|SO_1524206 SO_1524 "heat shock protein Gr 0.464 0.699 0.25 4.6e-05
UNIPROTKB|P32724235 grpE "Protein GrpE" [Mycobacte 0.319 0.421 0.327 5.7e-05
TAIR|locus:2175926 EMB1241 "embryo defective 1241" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 147/300 (49%), Positives = 180/300 (60%)

Query:     1 MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQ-RLISTSRLYHRSNSLRFVSV-Q 58
             MA ++KTP  H +  P    AP S+   KP C+SF   R +S S L  R+ SLR VS   
Sbjct:     1 MAGLLKTPSLHLT--PTLLHAP-SVPF-KPFCVSFAGGRNVSVS-LSRRA-SLRSVSSGY 54

Query:    59 SLRFIKFSPLASTGXXXXXXXXXXXXXXXXXXSSDGAVGIEXXXXXXXXXXXXXXXXXXX 118
              LR +   P AS                     +DGAV +E                   
Sbjct:    55 PLRLLNLVPFAS--GEAETTETEVESNEPEVQETDGAVDVENENASAEEGEAEEEEA--- 109

Query:   119 XXXPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178
                  + I   L+SYKEALA N++ K AEIEA LKS EDEK  L  KV +LS ELS ER 
Sbjct:   110 -----AVITALLKSYKEALADNNEGKIAEIEASLKSIEDEKFLLADKVASLSNELSVERD 164

Query:   179 RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238
             R++RISADFDNFRKRTE+ERL+LV+NAQGEV+E LL VLDNFERAK+QIKV+TEGEEK+ 
Sbjct:   165 RLIRISADFDNFRKRTERERLNLVSNAQGEVVENLLAVLDNFERAKSQIKVETEGEEKVT 224

Query:   239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFV 298
             NSYQSIYKQ VEILGSLGV+ VETVG  FDP++   +  + S   +E   +L +   GF+
Sbjct:   225 NSYQSIYKQFVEILGSLGVIHVETVGKQFDPMLHEAIMREDSAEYEE-GIVLEEYRKGFL 283
GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0051087 "chaperone binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005507 "copper ion binding" evidence=IDA
TAIR|locus:2035962 AT1G36390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0414 CHY_0414 "grpE protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4540 BA_4540 "GrpE protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0849 CJE_0849 "co-chaperone protein GrpE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0032 GSU_0032 "GrpE protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P09372 grpE [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1400 DET_1400 "co-chaperone protein GrpE" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1524 SO_1524 "heat shock protein GrpE" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P32724 grpE "Protein GrpE" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00130661
hypothetical protein; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (By similarity) (342 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VII.1758.1
annotation not avaliable (391 aa)
• •     0.558
gw1.V.2768.1
hypothetical protein (444 aa)
• •     0.532
gw1.44.94.1
hypothetical protein (426 aa)
• •     0.532
eugene3.00860035
hypothetical protein (705 aa)
• •   • 0.494
estExt_fgenesh4_pg.C_1500058
hypothetical protein (706 aa)
• •   • 0.491
eugene3.00150434
hypothetical protein (419 aa)
• •     0.480
fgenesh4_pg.C_scaffold_16170000001
Predicted protein (324 aa)
• •     0.477
fgenesh4_pm.C_LG_I001114
hypothetical protein (683 aa)
• •   • 0.465
estExt_fgenesh4_pm.C_LG_IX0400
hypothetical protein (683 aa)
• •   • 0.463
gw1.V.4695.1
annotation not avaliable (352 aa)
• •     0.442

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
PRK14143238 PRK14143, PRK14143, heat shock protein GrpE; Provi 2e-31
cd00446137 cd00446, GrpE, GrpE is the adenine nucleotide exch 1e-24
pfam01025165 pfam01025, GrpE, GrpE 1e-23
COG0576193 COG0576, GrpE, Molecular chaperone GrpE (heat shoc 2e-23
PRK14140191 PRK14140, PRK14140, heat shock protein GrpE; Provi 5e-19
PRK14160211 PRK14160, PRK14160, heat shock protein GrpE; Provi 9e-15
PRK14153194 PRK14153, PRK14153, heat shock protein GrpE; Provi 1e-12
PRK14145196 PRK14145, PRK14145, heat shock protein GrpE; Provi 2e-12
PRK14164218 PRK14164, PRK14164, heat shock protein GrpE; Provi 4e-11
PRK14158194 PRK14158, PRK14158, heat shock protein GrpE; Provi 9e-09
PRK14151176 PRK14151, PRK14151, heat shock protein GrpE; Provi 6e-08
PRK14162194 PRK14162, PRK14162, heat shock protein GrpE; Provi 6e-08
PRK14142223 PRK14142, PRK14142, heat shock protein GrpE; Provi 6e-07
PRK14150193 PRK14150, PRK14150, heat shock protein GrpE; Provi 2e-06
PRK14149191 PRK14149, PRK14149, heat shock protein GrpE; Provi 1e-05
PRK14159176 PRK14159, PRK14159, heat shock protein GrpE; Provi 7e-05
PRK14146215 PRK14146, PRK14146, heat shock protein GrpE; Provi 7e-05
PRK14163214 PRK14163, PRK14163, heat shock protein GrpE; Provi 7e-05
PRK14147172 PRK14147, PRK14147, heat shock protein GrpE; Provi 1e-04
PRK10325197 PRK10325, PRK10325, heat shock protein GrpE; Provi 2e-04
PRK14141209 PRK14141, PRK14141, heat shock protein GrpE; Provi 3e-04
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional Back     alignment and domain information 
 Score =  117 bits (295), Expect = 2e-31
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 15/193 (7%)

Query: 77  TETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEA 136
           T  Q+ ++      S   A      +S++ +   A     + + A      ++       
Sbjct: 2   TPEQDPLEVKLAVISESEAEDNSPESSEEVTEQEAELTNPEGDAAEAESSPDS------- 54

Query: 137 LASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196
             S     AA+  A L         LE+++ +L +EL    ++ +RI+ADFDNFRKRT +
Sbjct: 55  -GSAASETAADNAARLA-------QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106

Query: 197 ERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLG 256
           E+  L    +   +  +L V+DNFERA+ Q+K + E  + ++ SYQ +YKQLV++L  LG
Sbjct: 107 EQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLKRLG 166

Query: 257 VVPVETVGNPFDP 269
           V P+  VG  FDP
Sbjct: 167 VSPMRVVGQEFDP 179

Length = 238
>gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases Back     alignment and domain information
>gnl|CDD|216249 pfam01025, GrpE, GrpE Back     alignment and domain information
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237623 PRK14142, PRK14142, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184546 PRK14163, PRK14163, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237625 PRK14147, PRK14147, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
PRK14148195 heat shock protein GrpE; Provisional 100.0
PRK14151176 heat shock protein GrpE; Provisional 100.0
PRK14143238 heat shock protein GrpE; Provisional 100.0
PRK14147172 heat shock protein GrpE; Provisional 100.0
PRK14162194 heat shock protein GrpE; Provisional 100.0
PRK14153194 heat shock protein GrpE; Provisional 100.0
PRK14155208 heat shock protein GrpE; Provisional 100.0
PRK14145196 heat shock protein GrpE; Provisional 100.0
PRK14161178 heat shock protein GrpE; Provisional 100.0
PRK14139185 heat shock protein GrpE; Provisional 100.0
PRK14150193 heat shock protein GrpE; Provisional 100.0
PRK14140191 heat shock protein GrpE; Provisional 100.0
PRK14154208 heat shock protein GrpE; Provisional 100.0
PRK14141209 heat shock protein GrpE; Provisional 100.0
COG0576193 GrpE Molecular chaperone GrpE (heat shock protein) 100.0
PRK14158194 heat shock protein GrpE; Provisional 100.0
PRK14160211 heat shock protein GrpE; Provisional 100.0
PRK14146215 heat shock protein GrpE; Provisional 100.0
PRK14144199 heat shock protein GrpE; Provisional 100.0
PRK14163214 heat shock protein GrpE; Provisional 100.0
PRK10325197 heat shock protein GrpE; Provisional 100.0
PRK14159176 heat shock protein GrpE; Provisional 100.0
PRK14149191 heat shock protein GrpE; Provisional 100.0
PRK14157227 heat shock protein GrpE; Provisional 100.0
PRK14156177 heat shock protein GrpE; Provisional 100.0
PRK14142223 heat shock protein GrpE; Provisional 100.0
PRK14164218 heat shock protein GrpE; Provisional 100.0
KOG3003236 consensus Molecular chaperone of the GrpE family [ 100.0
cd00446137 GrpE GrpE is the adenine nucleotide exchange facto 100.0
PF01025165 GrpE: GrpE; InterPro: IPR000740 Molecular chaperon 100.0
KOG3003236 consensus Molecular chaperone of the GrpE family [ 94.97
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 91.74
PTZ00464211 SNF-7-like protein; Provisional 91.65
KOG1962216 consensus B-cell receptor-associated protein and r 91.52
PF0472856 LPP: Lipoprotein leucine-zipper; InterPro: IPR0068 91.32
PF13805271 Pil1: Eisosome component PIL1; PDB: 3PLT_B. 91.16
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 91.08
PRK11637 428 AmiB activator; Provisional 89.24
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 88.86
COG3883265 Uncharacterized protein conserved in bacteria [Fun 88.81
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 88.41
PF03938158 OmpH: Outer membrane protein (OmpH-like); InterPro 88.34
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 88.33
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 87.33
COG3883265 Uncharacterized protein conserved in bacteria [Fun 85.52
PF06810155 Phage_GP20: Phage minor structural protein GP20; I 84.78
PRK14163214 heat shock protein GrpE; Provisional 84.66
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 84.31
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 84.21
KOG1853 333 consensus LIS1-interacting protein NUDE [Cytoskele 84.09
PRK13169110 DNA replication intiation control protein YabA; Re 83.36
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 83.18
COG4467114 Regulator of replication initiation timing [Replic 83.05
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 82.05
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 82.02
PRK10884206 SH3 domain-containing protein; Provisional 81.95
PF1435785 DUF4404: Domain of unknown function (DUF4404) 81.83
PRK14143238 heat shock protein GrpE; Provisional 81.58
PF10481 307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 81.39
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 81.34
cd07664234 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S 81.32
>PRK14148 heat shock protein GrpE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.5e-44  Score=322.89  Aligned_cols=151  Identities=21%  Similarity=0.314  Sum_probs=142.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhh
Q 021637          155 FEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE  234 (310)
Q Consensus       155 ~~~E~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~  234 (310)
                      .+.+++.+++++..|++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.... ...
T Consensus        38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~-~~~  116 (195)
T PRK14148         38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKL-EEA  116 (195)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-hhH
Confidence            3566788999999999999999999999999999999999999999999999999999999999999999986532 345


Q ss_pred             HhhhhHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637          235 EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK  309 (310)
Q Consensus       235 ~~l~~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa  309 (310)
                      .+|++||+||+++|.++|+++||++|+++|++|||++||||++++++++++ |+|++|+|+||+|  +|||||||
T Consensus       117 ~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA  188 (195)
T PRK14148        117 IAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFED-NTIFDVFQKGYML--NGRIVRAA  188 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCc-CEEEEEeeCCcEe--CCEeeecc
Confidence            689999999999999999999999999999999999999999999999999 9999999999999  89999998

>PRK14151 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14143 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14147 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14162 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14153 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14155 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14145 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14161 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14139 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14150 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14140 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14154 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14141 heat shock protein GrpE; Provisional Back     alignment and domain information
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14158 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14160 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14146 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14144 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14163 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK10325 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14159 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14149 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14157 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14156 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14142 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14164 heat shock protein GrpE; Provisional Back     alignment and domain information
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases Back     alignment and domain information
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP Back     alignment and domain information
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length Back     alignment and domain information
>PRK14163 heat shock protein GrpE; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF14357 DUF4404: Domain of unknown function (DUF4404) Back     alignment and domain information
>PRK14143 heat shock protein GrpE; Provisional Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
4ani_A213 Structural Basis For The Intermolecular Communicati 4e-13
3a6m_A177 Crystal Structure Of Grpe From Thermus Thermophilus 1e-08
1dkg_A197 Crystal Structure Of The Nucleotide Exchange Factor 5e-04
>pdb|4ANI|A Chain A, Structural Basis For The Intermolecular Communication Between Dnak And Grpe In The Dnak Chaperone System From Geobacillus Kaustophilus Hta426 Length = 213 Back     alignment and structure 
Iteration: 1

 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
           ++  L  +LS    R LR+ ADF+NFR+RT +E  +        +   LL VLDNFERA 
Sbjct: 67  QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA- 125
Query: 225 TQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRV 275
             +K++T+ E+   I    + +Y+ LV+ L   GV  +E VG PFDP +   V
Sbjct: 126 --LKIETDNEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAV 176
>pdb|3A6M|A Chain A, Crystal Structure Of Grpe From Thermus Thermophilus Hb8 Length = 177 Back     alignment and structure
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 197 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
3a6m_A177 Protein GRPE, HSP-70 cofactor; coiled-coil, four-h 3e-30
4ani_A213 Protein GRPE; chaperone cycle, complementary assay 3e-26
1dkg_A197 Nucleotide exchange factor GRPE; HSP70, GRPE, nucl 4e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} Length = 177 Back     alignment and structure
 Score =  111 bits (280), Expect = 3e-30
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200
           +      +E  L++   E   LE ++    EEL   + + LR+ ADFDN+RKR E+E  +
Sbjct: 3   ERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKA 62

Query: 201 LVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPV 260
                  + +  LL VLD+ +RA   ++      E I    ++I      IL  LGV  V
Sbjct: 63  REREGVLKALRALLPVLDDLDRA---LEFAEASPESIRQGVRAIRDGFFRILAGLGVEEV 119

Query: 261 ETVGNPFDP 269
              G  FDP
Sbjct: 120 PGEGEAFDP 128
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213 Back     alignment and structure
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Length = 197 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
4ani_A213 Protein GRPE; chaperone cycle, complementary assay 100.0
1dkg_A197 Nucleotide exchange factor GRPE; HSP70, GRPE, nucl 100.0
3a6m_A177 Protein GRPE, HSP-70 cofactor; coiled-coil, four-h 100.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.05
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.68
3swy_A46 Cyclic nucleotide-gated cation channel alpha-3; co 91.5
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 91.26
3swf_A74 CGMP-gated cation channel alpha-1; coiled-coil, as 91.04
3he5_A49 Synzip1; heterodimeric coiled-coil, de novo protei 89.78
3plt_A234 Sphingolipid long chain base-responsive protein L; 89.65
2avr_X119 Adhesion A; antiparallel helix-loop-helix, leucine 89.58
3etw_A119 Adhesin A; antiparallel helix-loop-helix, leucine 89.07
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 88.14
1jcd_A52 Major outer membrane lipoprotein; protein folding, 86.28
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 85.73
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 84.27
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 83.23
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 82.58
1uix_A71 RHO-associated kinase; coiled-coil, transferase; H 82.47
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 81.92
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 81.82
4etp_A 403 Kinesin-like protein KAR3; kinesin motor protein, 80.74
3cve_A72 Homer protein homolog 1; coiled coil, alternative 80.52
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 80.49
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Back     alignment and structure
Probab=100.00  E-value=5.6e-44  Score=324.08  Aligned_cols=147  Identities=29%  Similarity=0.441  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhchhhcchhhHhhh
Q 021637          159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN  238 (310)
Q Consensus       159 ~~~L~~el~~Le~el~elkdk~lR~~ADfeN~RKRt~kE~e~~~~~A~~~~ikdLLpVlDnLERAl~~~~~~~e~~~~l~  238 (310)
                      +..|+.+|..|++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+. +....+|+
T Consensus        61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~-~~~~~~l~  139 (213)
T 4ani_A           61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD-NEQAKSIL  139 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC-CSTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc-cccHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999987653 34567899


Q ss_pred             hHHHHHHHHHHHHHHhCCCeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637          239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK  309 (310)
Q Consensus       239 ~Gv~mi~kqL~~vL~k~GVe~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa  309 (310)
                      +||+||+++|.++|.++||++|+++|++|||++|+||++++++++++ |+|++|+|+||+|  +|||||||
T Consensus       140 eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~-gtVv~V~qkGY~l--~dRVLRpA  207 (213)
T 4ani_A          140 QGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEP-NTVVEELQKGYKL--KDRVLRPA  207 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCS-SSEEEEEECCCEE--TTSCCSCE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCC-CcEEEEEeCCeEE--CCEEeece
Confidence            99999999999999999999999999999999999999999999999 9999999999999  89999998
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Back     alignment and structure
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus} Back     alignment and structure
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1 Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d1dkga159 Head domain of nucleotide exchange factor GrpE {Es 99.72
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Head domain of nucleotide exchange factor GrpE
superfamily: Head domain of nucleotide exchange factor GrpE
family: Head domain of nucleotide exchange factor GrpE
domain: Head domain of nucleotide exchange factor GrpE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.3e-18  Score=126.85  Aligned_cols=50  Identities=18%  Similarity=0.267  Sum_probs=48.1

Q ss_pred             CeeecCCCCCCCCCCCceeeeeeCCCCCCCCceeEEeccceeecCCCeEeecC
Q 021637          257 VVPVETVGNPFDPLVKPRVGLKISRVLDEFSQILNQVCSGFVKTWTTFLTRTK  309 (310)
Q Consensus       257 Ve~I~~vGe~FDPn~HEAV~~~~s~d~ee~gtVv~V~qkGY~Lg~~~RVLRPa  309 (310)
                      |+.|+++|++|||++||||+++++++.++ |+|++|+|+||++  +|||||||
T Consensus         1 ve~i~~~g~~FDP~~HeAv~~~~~~~~~~-~~I~~v~~~GY~~--~~rvlRpA   50 (59)
T d1dkga1           1 VEVIAETNVPLDPNVHQAIAMVESDDVAP-GNVLGIMQKGYTL--NGRTIRAA   50 (59)
T ss_dssp             EEEECCCSSBCCTTSEEEEEEEECSSSCT-TBEEEEEECEEEE--TTEEEECE
T ss_pred             CceeCCCCCCCCHHHceEeeEecCCCCCC-CEEEEEEeCCcEE--CCEEeecc
Confidence            57899999999999999999999999999 9999999999999  89999998