Citrus Sinensis ID: 021651

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MLQNSASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHcEEEEcc
Coil and Loop (DISEMBL)
mlqnsassqigaagsdpllnKVSAFRDACWRflrphtirgtaLGSVALVARALIENPNLIKWSLLLKAFSGLLALIcgngyivginqiydigidkvnkpylpiaagdlsVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLflgtiysvppfrMKRFAVAAFLIIATVRGFLLNFGVYYATRAALglsfewnaPVAFITAFVTLFALVIAVTkdlpdvegdrkFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Flexible Loop (DISEMBL)
mlqnsassqigaagsdpllNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTkdlpdvegdrKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Low Complexity Region (SEG)
MLQNSASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWslllkafsgllalICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Disordered region (IsUnstruct)
*****************LLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG**
Disordered Region (DISOPRED)
************************FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Disordered Region (DISEMBL)
***********AAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Disordered Region (DISPRO)
******************LNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQNSASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q1ACB3	386	Homogentisate phytyltrans	yes	no	0.944	0.756	0.843	1e-141
Q0D576	379	Probable homogentisate ph	yes	no	0.938	0.765	0.789	1e-131
Q8VWJ1	393	Homogentisate phytyltrans	no	no	0.948	0.745	0.339	4e-35
B7FA90	404	Probable homogentisate ph	no	no	0.870	0.665	0.378	5e-34
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.880	0.663	0.291	2e-22
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.864	0.652	0.306	3e-20
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.598	0.656	0.296	9e-11
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.498	0.56	0.294	2e-09
A6UVU6	279	Digeranylgeranylglyceryl	yes	no	0.511	0.566	0.299	2e-08
A9A8Y7	278	Digeranylgeranylglyceryl	yes	no	0.485	0.539	0.303	3e-08

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/293 (84%), Positives = 272/293 (92%), Gaps = 1/293 (0%)

Query: 6   ASSQIGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL 64
           A SQ+GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS ALV RALIEN +LIKWSL
Sbjct: 70  ACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSL 129

Query: 65  LLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTG 124
           +LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFFA+ G
Sbjct: 130 VLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAG 189

Query: 125 LLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 184
           LL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLIIATVRGFLLNFGVY+AT
Sbjct: 190 LLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYHAT 249

Query: 185 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 244
           RAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+ISTLATKLGV+NIAFL
Sbjct: 250 RAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFL 309

Query: 245 GSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           GSGLLL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+FQTW+LE+ANYTK
Sbjct: 310 GSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTK 362

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/290 (78%), Positives = 254/290 (87%)

Query: 8   SQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLK 67
           SQ GAAG  PL   +S  +D+CWRFLRPHTIRGTALGS+ALVARALIENP LI W L+ K
Sbjct: 66  SQAGAAGPAPLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFK 125

Query: 68  AFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLI 127
           AF GL+ALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSVQ+AW LV+ FA  G  I
Sbjct: 126 AFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSI 185

Query: 128 VAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAA 187
           V  NFGPFITSLYCLGLFLGTIYSVPPFR+KR+ VAAFLIIATVRGFLLNFGVYYATRAA
Sbjct: 186 VVTNFGPFITSLYCLGLFLGTIYSVPPFRLKRYPVAAFLIIATVRGFLLNFGVYYATRAA 245

Query: 188 LGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSG 247
           LGL+F+W++PVAFIT FVTLFALVIA+TKDLPDVEGDRK++ISTLATKLGV+NIAFLGSG
Sbjct: 246 LGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSG 305

Query: 248 LLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           LL+ NYVAAI  A  MPQAFRR +M+P H  LA  ++FQTW+LE+A YTK
Sbjct: 306 LLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTK 355

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 171/318 (53%), Gaps = 25/318 (7%)

Query: 4   NSASSQIGAAGSDPLLNKVSAFRD---ACWRFLRPHTIRGTALGSVALVARALIENPNLI 60
           N+ + Q  A  S+   +K  +FRD   A +RF RPHT+ GT L S+  V+   +E  + I
Sbjct: 75  NATAGQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVL-SILSVSFLAVEKVSDI 130

Query: 61  KWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFF 120
              L       ++A +  N YIVG+NQ+ D+ IDKVNKPYLP+A+G+ SV +   +V  F
Sbjct: 131 SPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASF 190

Query: 121 AVTGLLIVAFNFG------PFITSLYCLGLFLGTIYSV--PPFRMKRFAVAAFLIIATVR 172
           +     I++F  G      P   +L+ +   LGT YS+  P  R KRFA+ A + I  VR
Sbjct: 191 S-----IMSFWLGWIVGSWPLFWALF-VSFMLGTAYSINLPLLRWKRFALVAAMCILAVR 244

Query: 173 GFLLNFGVY-YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIST 231
             ++    Y +      G    +  P+ F TAF++ F++VIA+ KD+PD+EGD+ F I +
Sbjct: 245 AIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRS 304

Query: 232 LATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLE 291
            +  LG K + +    LL + Y  AIL     P  + + + +  HVILA+ L  +   ++
Sbjct: 305 FSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVD 364

Query: 292 RANYTKVILATCCTLGMW 309
            ++ T++   T C + +W
Sbjct: 365 LSSKTEI---TSCYMFIW 379

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  145 bits (365), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 158/293 (53%), Gaps = 24/293 (8%)

Query: 2   LQNSASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALG--SVALVARALIENPNL 59
           LQ+SA     A  S  +   +S+  DA +RF RPHT+ GTAL   SV+L+A   +EN + 
Sbjct: 88  LQSSAE----AHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLLA---VENLSD 140

Query: 60  IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIF 119
           +    L      ++A +  N YIVG+NQ++DI IDKVNKP LP+A+G+ S  +   LV  
Sbjct: 141 VSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSA 200

Query: 120 FAVTGL-LIVAFNFGPFITSLYCLGLFLGTIYSV--PPFRMKRFAVAAFLIIATVRG--- 173
           FA     L  A    P   +L+ +   LGT YS+  P  R KR AV A L I  VR    
Sbjct: 201 FAAMSFGLGWAVGSQPLFLALF-ISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIV 259

Query: 174 ---FLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIS 230
              F L+   +   R A+     +  P+ F TAF+T F++VIA+ KD+PD+EGDR F I 
Sbjct: 260 QLAFFLHIQTFVFRRPAV-----FTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIK 314

Query: 231 TLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCL 283
           + + +LG K + ++  GLL + Y  AIL        + +   +  H ILA+ L
Sbjct: 315 SFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAIL 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 153/298 (51%), Gaps = 26/298 (8%)

Query: 3   QNSASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSV--ALVARALIENPNLI 60
           + S   +      + + + V+   D  ++F RP+ +    LG+   +LVA   +E  + +
Sbjct: 91  EQSFEYEPQTRDPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVA---VEKLSDL 147

Query: 61  KWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFF 120
             +  +     ++A+IC + + VG+NQ+ DI IDK+NKP LP+A+G LS ++   +VI  
Sbjct: 148 SLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRN---VVIIT 204

Query: 121 AVTGLLIVAF----NFGPFITSLYCLGLFLGTIYSV--PPFRMKRFAV-AAFLIIATVR- 172
           A + +L + F    +  P   +++ +   + + Y+V  P  R K++ V  A   IA V  
Sbjct: 205 ASSLILGLGFAWIVDSWPLFWTVF-ISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAV 263

Query: 173 ----GFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFK 228
               GF L+       R        +  P+ F TA V+++A+VIA+ KD+PD+EGD KF 
Sbjct: 264 TRSLGFFLHMQTCVFKRPT-----TFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFG 318

Query: 229 ISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQ 286
           I +L+ +LG K + ++   LL + Y   IL     P  + + + +  H +LAS L + 
Sbjct: 319 IQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYH 376

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 20/287 (6%)

Query: 12  AAGSDP--LLNKVSAFRDACWRFLRPHTIRGTALG--SVALVARALIENPNLIKWSLLLK 67
           A  S+P  +L+ V     A + F  P+T+ G  L   S +L+A   +E  + I  S L+ 
Sbjct: 97  AHASNPKNILDSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLA---VEKLSDISLSFLIG 153

Query: 68  AFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ-----SAWFLVIFFAV 122
              G+L  +    Y+ G+NQ+YD+ IDK+NKP+LP+A+G  S +     SA FL + F  
Sbjct: 154 VLQGVLPQLFIEIYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGF 213

Query: 123 TGLLIVAFNFGPFITSLYCLGLFLGTIYS--VPPFRMKRFA-VAAFLIIATVRGFLLNFG 179
           T +        P I +L  +     T YS  VP  R KR+  VAA  +I+T    L    
Sbjct: 214 TWIT----GSWPLICNLVVIASSW-TAYSIDVPLLRWKRYPFVAAMCMISTWALALPISY 268

Query: 180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK 239
            ++     L     +   + F+ AF+T ++L +A++KD+PDVEGD++  I + A +LG K
Sbjct: 269 FHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQK 328

Query: 240 NIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQ 286
              ++      + +   ILA       + +      + +LAS L +Q
Sbjct: 329 RAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQ 375

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 34/219 (15%)

Query: 31  RFLRPHTIRGTALGSVA--LVARALIENPNLIKWSLLLKA--FSGLL-ALICGNGYIVGI 85
           + +R H + G ALG++   LV+          +W L LK    S L+  LI   GY+  I
Sbjct: 8   QLVRIHNVIGAALGAIMGFLVSS---------QWYLELKGILLSALVVGLIAAGGYV--I 56

Query: 86  NQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGL-LIVAFNFGPFITSLYCLGL 144
           N +YD+ IDK+NKPY PI +G +SV  A  L I   + G+ L +  N    + +L     
Sbjct: 57  NDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALVTA-- 114

Query: 145 FLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSF---EWNAPVAFI 201
            +G IY      +K+      L++AT     + +G         GL+F    W   +   
Sbjct: 115 -IGLIYYAK--DLKKTGFYGNLLVATTTALSIFYG---------GLAFFSDNWLLRIIIP 162

Query: 202 TAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKN 240
           T +     L+  + K + D  GD    + TLAT LG+  
Sbjct: 163 TLYAFFLTLIREIVKGIEDYNGDSLNNVKTLATTLGINK 201

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 72  LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA-WFLVIFFAVTGLLIVAF 130
           +++LI   GY+  IN +YDI +DK+NKP  P+ +G ++V  A  F ++ FAV  ++ +  
Sbjct: 44  VVSLIAAGGYV--INDVYDIEVDKINKPERPLPSGRIAVNIARRFSIVLFAVGLIISIPL 101

Query: 131 NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGL 190
              PF  +L  + L      S     +K+  +    I+A           YY   A+  L
Sbjct: 102 GLIPFGFALITIVLLYEYARS-----LKKLGLVGNFIVALTSA----LSAYYGGLASGSL 152

Query: 191 SFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKN 240
              +  P    T ++  F L     K + D+EGD++  ++TLA KLG K+
Sbjct: 153 LGNFIIP----TIYIFFFTLSREFVKGIEDIEGDKRNGVNTLAVKLGEKS 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 19/177 (10%)

Query: 75  LICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGP 134
           L+CG G    +N I DI IDK+NKP  P+ +  +S++SA        ++G++I  FN   
Sbjct: 51  LVCGFGN--ALNDIQDIEIDKINKPNRPLPSNKISLKSATIFSYLLMISGIIISLFNMIC 108

Query: 135 FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEW 194
           F      + L    +  +   + KR  +   LI+A + G +  FG      A++G     
Sbjct: 109 F-----AIALINSIVLYLYAKKYKRNKIIGNLIVAYLTGSIFIFG-----GASVG----- 153

Query: 195 NAPVAFITAFVTLFAL-VIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL 250
           N  +  I     LFA     + KD  D++GD+   + +L  K G KN  F+  G LL
Sbjct: 154 NVEITLILFLCALFATWSREIIKDYEDLDGDKSEGVISLPIKYG-KNSIFVAIGFLL 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) (taxid: 419665)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A9A8Y7|DGGGP_METM6 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0995 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 75  LICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGP 134
           L+CG G    +N IYD+ IDK+NKP  PI +  +S+  A        V GL+I  FN   
Sbjct: 49  LVCGFGN--ALNDIYDLKIDKINKPKRPIPSKRISLGEARIFSYLLVVMGLIISMFNITC 106

Query: 135 FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEW 194
           F+     + +    +        K+  +   LI+A + G +  FG       A+G     
Sbjct: 107 FL-----MAVLNSIVLQQYASTYKKNKIVGNLIVAYLTGSVFIFG-----GIAVG----- 151

Query: 195 NAPVAFITAFVTLFAL-VIAVTKDLPDVEGDRKFKISTLATKLGVKNI 241
           N  V  +     LFA+    + KD  D+EGD K K+ ++  K G K+I
Sbjct: 152 NIDVTIMLFLCALFAMWSREIIKDYEDIEGDIKEKVISIPIKCGEKSI 199

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcus maripaludis (strain C6 / ATCC BAA-1332) (taxid: 444158)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
297833984	385	prenyltransferase [Arabidopsis lyrata su	0.948	0.761	0.843	1e-143
224088146	391	predicted protein [Populus trichocarpa]	0.944	0.746	0.856	1e-142
225441577	323	PREDICTED: homogentisate phytyltransfera	0.948	0.907	0.860	1e-141
297739777	390	unnamed protein product [Vitis vinifera]	0.944	0.748	0.863	1e-141
255581572	373	bacteriochlorophyll synthase, putative [	0.922	0.764	0.856	1e-140
145332363	386	homogentisate solanesyltransferase [Arab	0.944	0.756	0.843	1e-139
238479737	393	homogentisate solanesyltransferase [Arab	0.932	0.732	0.844	1e-138
10998133	441	unnamed protein product [Arabidopsis tha	0.954	0.668	0.794	1e-137
449437534	389	PREDICTED: homogentisate phytyltransfera	0.964	0.766	0.838	1e-133
356500395	389	PREDICTED: homogentisate phytyltransfera	0.944	0.750	0.805	1e-133

>gi|297833984|ref|XP_002884874.1| prenyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297330714|gb|EFH61133.1| prenyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/293 (84%), Positives = 275/293 (93%)

Query: 5   SASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL 64
            A SQ+GAAG+DP+L++++ F++ACWRFLRPHTIRGTALGS ALVARALIEN +LIKWSL
Sbjct: 69  QACSQVGAAGTDPVLDRITRFQNACWRFLRPHTIRGTALGSTALVARALIENTHLIKWSL 128

Query: 65  LLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTG 124
           +LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFFA+ G
Sbjct: 129 VLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAG 188

Query: 125 LLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 184
           LL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF +AAFLIIATVRGFLLNFGVY+AT
Sbjct: 189 LLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPIAAFLIIATVRGFLLNFGVYHAT 248

Query: 185 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 244
           RAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+ISTLATKLGV+NIAFL
Sbjct: 249 RAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFL 308

Query: 245 GSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           GSGLLL+NYV+AI  A YMPQ FR +LMIPAH+ILASCL+FQTW+LE+ANYTK
Sbjct: 309 GSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHLILASCLIFQTWVLEKANYTK 361

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088146|ref|XP_002308343.1| predicted protein [Populus trichocarpa] gi|222854319|gb|EEE91866.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/292 (85%), Positives = 268/292 (91%)

Query: 6   ASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLL 65
           A SQ GAAGSDP+LNK+S F+DACWRFLRPHTIRGTALGS ALVARALIEN N+IKWSL+
Sbjct: 76  ACSQAGAAGSDPILNKISDFKDACWRFLRPHTIRGTALGSTALVARALIENTNMIKWSLV 135

Query: 66  LKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGL 125
           LKAFSGL ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFFAV G+
Sbjct: 136 LKAFSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAVAGV 195

Query: 126 LIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 185
           LIV  NFGPFITSLYCLGLFLGTIYSVPP R KRF V AFLIIATVRGFLLNFGVY+ATR
Sbjct: 196 LIVGLNFGPFITSLYCLGLFLGTIYSVPPLRFKRFPVIAFLIIATVRGFLLNFGVYHATR 255

Query: 186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLG 245
           AALGL FEW++PVAFIT FVTLFALVIA+TKDLPDVEGDRK+ ISTLATKLGV+NIAFLG
Sbjct: 256 AALGLPFEWSSPVAFITTFVTLFALVIAITKDLPDVEGDRKYNISTLATKLGVRNIAFLG 315

Query: 246 SGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           SGLLL+NYV A+LAAIYMPQ F R+LMIPAH ILA  L+FQ W+LE+ANYTK
Sbjct: 316 SGLLLVNYVGAVLAAIYMPQDFSRSLMIPAHTILALSLVFQMWVLEQANYTK 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441577|ref|XP_002276728.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic [Vitis vinifera]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/293 (86%), Positives = 270/293 (92%)

Query: 5   SASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL 64
            AS+Q+GAAGSDP LNK S F+DACWRFLRPHTIRGTALGS ALVARALIENPNLIKWSL
Sbjct: 7   QASTQVGAAGSDPPLNKFSVFKDACWRFLRPHTIRGTALGSTALVARALIENPNLIKWSL 66

Query: 65  LLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTG 124
           L KAFSGLLALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSVQSAWFLV+FFAV G
Sbjct: 67  LFKAFSGLLALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVLFFAVAG 126

Query: 125 LLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 184
           +LIV  NFG FITSLYCLGL LGTIYSVPPFRMKRF VAAFLIIATVRGFLLNFGVYYAT
Sbjct: 127 VLIVGSNFGSFITSLYCLGLVLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYAT 186

Query: 185 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 244
           RAALGL F W+APV FIT FVTLFALVIA+TKDLPDVEGDRK++ISTLATKLGV+NIAFL
Sbjct: 187 RAALGLPFMWSAPVVFITTFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFL 246

Query: 245 GSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           GSGLLL+NY+ +ILAAIYMPQAFR +LMIPAH ILA+ L+FQ  +LE+ANYTK
Sbjct: 247 GSGLLLVNYIGSILAAIYMPQAFRLSLMIPAHAILAAGLIFQARVLEQANYTK 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739777|emb|CBI29959.3| unnamed protein product [Vitis vinifera]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/292 (86%), Positives = 270/292 (92%)

Query: 6   ASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLL 65
           AS+Q+GAAGSDP LNK S F+DACWRFLRPHTIRGTALGS ALVARALIENPNLIKWSLL
Sbjct: 75  ASTQVGAAGSDPPLNKFSVFKDACWRFLRPHTIRGTALGSTALVARALIENPNLIKWSLL 134

Query: 66  LKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGL 125
            KAFSGLLALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSVQSAWFLV+FFAV G+
Sbjct: 135 FKAFSGLLALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVLFFAVAGV 194

Query: 126 LIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 185
           LIV  NFG FITSLYCLGL LGTIYSVPPFRMKRF VAAFLIIATVRGFLLNFGVYYATR
Sbjct: 195 LIVGSNFGSFITSLYCLGLVLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYATR 254

Query: 186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLG 245
           AALGL F W+APV FIT FVTLFALVIA+TKDLPDVEGDRK++ISTLATKLGV+NIAFLG
Sbjct: 255 AALGLPFMWSAPVVFITTFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLG 314

Query: 246 SGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           SGLLL+NY+ +ILAAIYMPQAFR +LMIPAH ILA+ L+FQ  +LE+ANYTK
Sbjct: 315 SGLLLVNYIGSILAAIYMPQAFRLSLMIPAHAILAAGLIFQARVLEQANYTK 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581572|ref|XP_002531591.1| bacteriochlorophyll synthase, putative [Ricinus communis] gi|223528787|gb|EEF30794.1| bacteriochlorophyll synthase, putative [Ricinus communis]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/285 (85%), Positives = 267/285 (93%)

Query: 6   ASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLL 65
           A +++GAAGSDP+LNK+S F+DACWRFLRPHTIRGTALGS ALVARALIENPNLIKWSLL
Sbjct: 83  ACTKVGAAGSDPVLNKISEFKDACWRFLRPHTIRGTALGSTALVARALIENPNLIKWSLL 142

Query: 66  LKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGL 125
           LKA SGL ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFF+VTG+
Sbjct: 143 LKAVSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFSVTGI 202

Query: 126 LIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR 185
           L+V  NFGPFITSLYCLGLFLGTIYS+PPFRMKRFAVAAFLIIA VRGFLLNFGVY+ATR
Sbjct: 203 LMVGLNFGPFITSLYCLGLFLGTIYSIPPFRMKRFAVAAFLIIAMVRGFLLNFGVYHATR 262

Query: 186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLG 245
           AALGLSFEW++PVAFIT FVTLFALVIA+TKDLPDVEGDRK+KISTLAT LGV+NIAFLG
Sbjct: 263 AALGLSFEWSSPVAFITTFVTLFALVIAITKDLPDVEGDRKYKISTLATSLGVRNIAFLG 322

Query: 246 SGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLL 290
           +GLLLLNY+ A+ AAIYMPQAFRR+LMIP H ILA+ L+FQ  L+
Sbjct: 323 TGLLLLNYIGAVWAAIYMPQAFRRSLMIPVHTILAAFLIFQVGLI 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332363|ref|NP_001078138.1| homogentisate solanesyltransferase [Arabidopsis thaliana] gi|122177780|sp|Q1ACB3.1|HPT2_ARATH RecName: Full=Homogentisate phytyltransferase 2, chloroplastic; AltName: Full=Vitamin E pathway gene 2-2 protein; Short=AtVTE2-2; Flags: Precursor gi|81295668|gb|ABB70127.1| homogentisate phytyltransferase VTE2-2 [Arabidopsis thaliana] gi|332641604|gb|AEE75125.1| homogentisate solanesyltransferase [Arabidopsis thaliana]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/293 (84%), Positives = 272/293 (92%), Gaps = 1/293 (0%)

Query: 6   ASSQIGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL 64
           A SQ+GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS ALV RALIEN +LIKWSL
Sbjct: 70  ACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSL 129

Query: 65  LLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTG 124
           +LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFFA+ G
Sbjct: 130 VLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAG 189

Query: 125 LLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 184
           LL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLIIATVRGFLLNFGVY+AT
Sbjct: 190 LLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYHAT 249

Query: 185 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 244
           RAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+ISTLATKLGV+NIAFL
Sbjct: 250 RAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFL 309

Query: 245 GSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           GSGLLL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+FQTW+LE+ANYTK
Sbjct: 310 GSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTK 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479737|ref|NP_001154609.1| homogentisate solanesyltransferase [Arabidopsis thaliana] gi|332641605|gb|AEE75126.1| homogentisate solanesyltransferase [Arabidopsis thaliana]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/289 (84%), Positives = 269/289 (93%), Gaps = 1/289 (0%)

Query: 10  IGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKA 68
           +GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS ALV RALIEN +LIKWSL+LKA
Sbjct: 81  VGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKA 140

Query: 69  FSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIV 128
            SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFFA+ GLL+V
Sbjct: 141 LSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVV 200

Query: 129 AFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAAL 188
            FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLIIATVRGFLLNFGVY+ATRAAL
Sbjct: 201 GFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYHATRAAL 260

Query: 189 GLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL 248
           GL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+ISTLATKLGV+NIAFLGSGL
Sbjct: 261 GLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGL 320

Query: 249 LLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           LL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+FQTW+LE+ANYTK
Sbjct: 321 LLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTK 369

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10998133|dbj|BAB03104.1| unnamed protein product [Arabidopsis thaliana]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/312 (79%), Positives = 273/312 (87%), Gaps = 17/312 (5%)

Query: 5   SASSQIGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWS 63
            A SQ+GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS ALV RALIEN +LIKWS
Sbjct: 85  QACSQVGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWS 144

Query: 64  LLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVT 123
           L+LKA SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFFA+ 
Sbjct: 145 LVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIA 204

Query: 124 GLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA 183
           GLL+V FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLIIATVRGFLLNFGVY+A
Sbjct: 205 GLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYHA 264

Query: 184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAF 243
           TRAALGL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+ISTLATKLGV+NIAF
Sbjct: 265 TRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAF 324

Query: 244 LGSGLLLLNYVAAILAAIYMP----------------QAFRRNLMIPAHVILASCLLFQT 287
           LGSGLLL+NYV+AI  A YMP                Q FR +LMIPAHVILAS L+FQT
Sbjct: 325 LGSGLLLVNYVSAISLAFYMPQYAALKRPTLLSFNNEQVFRGSLMIPAHVILASGLIFQT 384

Query: 288 WLLERANYTKVI 299
           W+LE+ANYTK I
Sbjct: 385 WVLEKANYTKSI 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437534|ref|XP_004136547.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like [Cucumis sativus] gi|449523848|ref|XP_004168935.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like [Cucumis sativus]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/298 (83%), Positives = 273/298 (91%)

Query: 5   SASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL 64
            A +Q+GAAG DPL+N +SAFRDACWRFLRPHTIRGTALGSV+LV RALIEN +LIKWSL
Sbjct: 73  QACTQVGAAGPDPLVNNISAFRDACWRFLRPHTIRGTALGSVSLVTRALIENSHLIKWSL 132

Query: 65  LLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTG 124
           + KA SGL ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSV+SAW LVIFFAV G
Sbjct: 133 VFKALSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVKSAWLLVIFFAVAG 192

Query: 125 LLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 184
           LL+V  NFGPFITSLY LGLFLGTIYSVPPFRMKRF VAAFLIIATVRGFLLNFGVYYAT
Sbjct: 193 LLVVGLNFGPFITSLYSLGLFLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYAT 252

Query: 185 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 244
           RAALGL+FEW++PVAFIT FVTLFALVIA+TKDLPDVEGDRKF+ISTLATKLGV+NI+FL
Sbjct: 253 RAALGLTFEWSSPVAFITTFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNISFL 312

Query: 245 GSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILAT 302
           GSGLLLLNYVAAI AAIYMPQAF R +MIP H ILA  L+FQ+WLLERANY++  ++T
Sbjct: 313 GSGLLLLNYVAAIAAAIYMPQAFNRFIMIPVHAILALSLIFQSWLLERANYSQEAIST 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500395|ref|XP_003519017.1| PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like [Glycine max]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/293 (80%), Positives = 259/293 (88%), Gaps = 1/293 (0%)

Query: 6   ASSQIGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL 64
           A + +GA+GSD PL  ++   +DACWRFLRPHTIRGTALGS ALVARALIEN NLIKWSL
Sbjct: 73  ACTGVGASGSDRPLAERLLDLKDACWRFLRPHTIRGTALGSFALVARALIENTNLIKWSL 132

Query: 65  LLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTG 124
             KAF GL ALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSVQSAWFLVIFFA  G
Sbjct: 133 FFKAFCGLFALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVIFFAAAG 192

Query: 125 LLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYAT 184
           L IV  NFGPFI SLY LGLFLGTIYSVPPFRMKRF VAAFLIIATVRGFLLNFGVYYAT
Sbjct: 193 LSIVGLNFGPFIFSLYTLGLFLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYAT 252

Query: 185 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL 244
           RAALGL+FEW++PV FIT FVT FALVIA+TKDLPDVEGDRK++IST ATKLGV+NIAFL
Sbjct: 253 RAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRKYQISTFATKLGVRNIAFL 312

Query: 245 GSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
           GSG+LL+NY+ ++LAAIYMPQAFRR L+IPAH I A  L++Q W+LE+ANYTK
Sbjct: 313 GSGILLVNYIVSVLAAIYMPQAFRRWLLIPAHTIFAISLIYQAWILEQANYTK 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.932	0.732	0.806	2.4e-122
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.961	0.755	0.331	8e-37
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.854	0.648	0.314	3.6e-25
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.857	0.646	0.297	5.9e-24
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.582	0.465	0.289	1.9e-09

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
 Identities = 233/289 (80%), Positives = 257/289 (88%)

Query:    10 IGAAGSD-PLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWXXXXXX 68
             +GAA SD P+L++++ F++ACWRFLRPHTIRGTALGS ALV RALIEN +LIKW      
Sbjct:    81 VGAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKA 140

Query:    69 XXXXXXXICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIV 128
                    ICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAW LVIFFA+ GLL+V
Sbjct:   141 LSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVV 200

Query:   129 AFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAAL 188
              FNFGPFITSLY LGLFLGTIYSVPP RMKRF VAAFLIIATVRGFLLNFGVY+ATRAAL
Sbjct:   201 GFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYHATRAAL 260

Query:   189 GLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL 248
             GL F+W+APVAFIT+FVTLFALVIA+TKDLPDVEGDRKF+ISTLATKLGV+NIAFLGSGL
Sbjct:   261 GLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGL 320

Query:   249 LLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
             LL+NYV+AI  A YMPQ FR +LMIPAHVILAS L+FQTW+LE+ANYTK
Sbjct:   321 LLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTK 369

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 104/314 (33%), Positives = 166/314 (52%)

Query:     4 NSASSQIGAAGSDPLLNKVSAFRD---ACWRFLRPHTIRGTALGSVALVARALIENPNLI 60
             N+ + Q  A  S+   +K  +FRD   A +RF RPHT+ GT L S+  V+   +E  + I
Sbjct:    75 NATAGQPEAFDSN---SKQKSFRDSLDAFYRFSRPHTVIGTVL-SILSVSFLAVEKVSDI 130

Query:    61 KWXXXXXXXXXXXXXICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFF 120
                            +  N YIVG+NQ+ D+ IDKVNKPYLP+A+G+ SV +   +V  F
Sbjct:   131 SPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASF 190

Query:   121 AVTGLLIVAFNFG--PFITSLYCLGLFLGTIYSV--PPFRMKRFAVAAFLIIATVRGFLL 176
             ++    +  +  G  P   +L+ +   LGT YS+  P  R KRFA+ A + I  VR  ++
Sbjct:   191 SIMSFWL-GWIVGSWPLFWALF-VSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIV 248

Query:   177 NFGVYYATRA-ALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATK 235
                 Y   +    G    +  P+ F TAF++ F++VIA+ KD+PD+EGD+ F I + +  
Sbjct:   249 QIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVT 308

Query:   236 LGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANY 295
             LG K + +    LL + Y  AIL     P  + + + +  HVILA+ L  +   ++ ++ 
Sbjct:   309 LGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSK 368

Query:   296 TKVILATCCTLGMW 309
             T++   T C + +W
Sbjct:   369 TEI---TSCYMFIW 379

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 88/280 (31%), Positives = 141/280 (50%)

Query:    16 DP--LLNKVSAFRDACWRFLRPHTIRGTALGSV--ALVARALIENPNLIKWXXXXXXXXX 71
             DP  +   V+   D  ++F RP+ I    LG+   +LVA   +E  + +           
Sbjct:    99 DPKNIWGSVNDALDTFYKFCRPYAIFSVVLGATFKSLVA---VERLSDLSLAFFIGWLQV 155

Query:    72 XXXXICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN 131
                 IC + + VG+NQ+ DI IDK+NKP LP+A+G+LS ++   +     + GL   A+ 
Sbjct:   156 VVAVICIHIFDVGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGF-AWI 214

Query:   132 FG--PFITSLYCLGLFLGTIYSV--PPFRMKRFAV-AAFLIIATVRGFL-LNFGVYYATR 185
              G  P   +++   +F    Y+V  P  R K++ V  A   IA V     L F ++  T 
Sbjct:   215 VGSWPLFWTVFICCMFAAA-YNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQT- 272

Query:   186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLG 245
                     +  P+ F TA V+++A+VIA+ KD+PD+EGD KF I +L+ +LG K + ++ 
Sbjct:   273 CVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWIC 332

Query:   246 SGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLF 285
               LL + Y   IL     P  + + + +  H ILAS L +
Sbjct:   333 VSLLEMAYGVTILVGATSPILWSKIITVLGHAILASVLWY 372

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 275 (101.9 bits), Expect = 5.9e-24, P = 5.9e-24
 Identities = 83/279 (29%), Positives = 140/279 (50%)

Query:    16 DP--LLNKVSAFRDACWRFLRPHTIRGTALGSV--ALVARALIENPNLIKWXXXXXXXXX 71
             DP  + + V+   D  ++F RP+ +    LG+   +LVA   +E  + +           
Sbjct:   102 DPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVA---VEKLSDLSLAFFIGWLQV 158

Query:    72 XXXXICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIV-AF 130
                 IC + + VG+NQ+ DI IDK+NKP LP+A+G LS ++   +     + GL      
Sbjct:   159 VVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIV 218

Query:   131 NFGPFITSLYCLGLFLGTIYSV--PPFRMKRFAV-AAFLIIATVRGFL-LNFGVYYATRA 186
             +  P   +++ +   + + Y+V  P  R K++ V  A   IA V     L F ++  T  
Sbjct:   219 DSWPLFWTVF-ISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQT-C 276

Query:   187 ALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGS 246
                    +  P+ F TA V+++A+VIA+ KD+PD+EGD KF I +L+ +LG K + ++  
Sbjct:   277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query:   247 GLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLF 285
              LL + Y   IL     P  + + + +  H +LAS L +
Sbjct:   337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWY 375

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 57/197 (28%), Positives = 87/197 (44%)

Query:    77 CGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWFLVIF-FAVTGLLIV-AF 130
             C  GY   IN  YD  ID +N+PY PI +G +S    +   W L++    + G+L V A 
Sbjct:   146 CLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDVWAG 205

Query:   131 NFGPFITSLYCLGLFLGTIYSVPPFRMKRFA-VAAFLIIATVRGFLLNFGVYYATRAALG 189
             +  P +  L   G  L  IYS PP ++K+   V  F + A+          ++A +A  G
Sbjct:   206 HTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVGNFALGASYISL-----PWWAGQALFG 260

Query:   190 LSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL 249
                     V  +T   ++  L IA+  D   VEGDR   + +L    G +   ++  G +
Sbjct:   261 TL---TPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAI 317

Query:   250 LLNY--VAAILAAIYMP 264
              +    VA  L A   P
Sbjct:   318 DITQLSVAGYLLASGKP 334


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.143   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      309       296   0.00093  115 3  11 21  0.40    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  196 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.93u 0.20s 20.13t   Elapsed:  00:00:01
  Total cpu time:  19.93u 0.21s 20.14t   Elapsed:  00:00:01
  Start:  Fri May 10 05:15:17 2013   End:  Fri May 10 05:15:18 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1ACB3	HPT2_ARATH	2, ., 5, ., 1, ., n, 8	0.8430	0.9449	0.7564	yes	no
Q0D576	HPT2_ORYSJ	2, ., 5, ., 1, ., n, 8	0.7896	0.9385	0.7651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_301372.1	annotation not avaliable (385 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.7__863__AT4G32770.1	annotation not avaliable (482 aa)	•		•			•	•		0.700
	scaffold_503631.1	annotation not avaliable (337 aa)						•	•		0.595
	fgenesh2_kg.2__1712__AT1G74470.1	annotation not avaliable (467 aa)			•			•	•		0.575
	fgenesh1_pg.C_scaffold_3001079	annotation not avaliable (564 aa)						•	•		0.574
	fgenesh2_kg.2__630__AT1G64970.1	AT1G64970 (347 aa)	•					•	•		0.572
	scaffold_100655.1	annotation not avaliable (445 aa)						•			0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-64
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-42
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-20
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	3e-19
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-16
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-15
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	3e-14
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	2e-12
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	1e-11
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	6e-11
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	6e-10
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	1e-09
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-07
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	2e-05
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	9e-05
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	2e-04
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	0.003

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  205 bits (524), Expect = 1e-64
 Identities = 96/259 (37%), Positives = 149/259 (57%), Gaps = 1/259 (0%)

Query: 28  ACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQ 87
           A W+F RPHTI GT+L  + L   A+  + N I  + L       +A +CGN YIVG+NQ
Sbjct: 15  ALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQ 74

Query: 88  IYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLG 147
           + DI ID++NKP+LP+AAG+ S +    +VI   +  L++ A   GP++     + L +G
Sbjct: 75  LTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALL-GPWLLITVGISLLIG 133

Query: 148 TIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTL 207
           T YS+PP R+KRF + A L I TVRG ++N G++   +  LG S      V  +T FV +
Sbjct: 134 TAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLV 193

Query: 208 FALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAF 267
           F   IA+ KD+PD+EGDR+++I+T   +LG + +  L   +L   Y+  I   +      
Sbjct: 194 FTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV 253

Query: 268 RRNLMIPAHVILASCLLFQ 286
               +I +H+IL + L ++
Sbjct: 254 NPAFLIVSHLILLALLWWR 272

Length = 308

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  147 bits (374), Expect = 1e-42
 Identities = 92/243 (37%), Positives = 137/243 (56%), Gaps = 8/243 (3%)

Query: 45  SVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA 104
           SV+L+A   + + + + ++ LL+A   L+  +  N YIVG+NQ+YDI IDKVNKPYLP+A
Sbjct: 5   SVSLLAVESLSDFSPLFFTGLLEA---LVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLA 61

Query: 105 AGDLSVQSAWFLVIFFAVTGLLI-VAFNFGPFITSLYCLGLFLGTIYSV--PPFRMKRFA 161
           +G+ SV +   +V  FA+    +       P   +L+ +   LGT YS+  P  R KR A
Sbjct: 62  SGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALF-VSFVLGTAYSINLPLLRWKRSA 120

Query: 162 VAAFLIIATVRGFLLNFGVYYATRA-ALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPD 220
           VAA   I  VR  ++    +   +   LG    +  P+ F TAF+  F++VIA+ KD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 221 VEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILA 280
           VEGDR F I + + +LG K + +L   LL + Y AAIL        + + + +  H ILA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 281 SCL 283
           S L
Sbjct: 241 SIL 243

Length = 280

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 88.5 bits (220), Expect = 2e-20
 Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 20/271 (7%)

Query: 30  WRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIY 89
            + LR        L  +  +   L+    L    LLL AF   LA          IN + 
Sbjct: 14  LKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAF---LAFFLARSAGYVINDLA 70

Query: 90  DIGIDKVNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLG 147
           D  ID++N      P+ +G +SV+ A  L I   + GL +      P    L    L L 
Sbjct: 71  DREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALL-LNPLAFLLSLAALVLA 129

Query: 148 TIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTL 207
             Y      +KRF     L++    G     G       A  +          +     L
Sbjct: 130 LAY----PFLKRFTFLPQLVLGLAFGLGALAG-------AAAVGGSLPLLAWLLLLAAIL 178

Query: 208 FALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAF 267
           + L   +   + D+EGDRK  + +L    G+K    L   LLL    +A+L  + +    
Sbjct: 179 WTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLA---SALLVLLGLLAGL 235

Query: 268 RRNLMIPAHVILASCLLFQTWLLERANYTKV 298
              + +   ++ A  LL+Q  +++  +    
Sbjct: 236 LGLIYLLGLLVAALLLLYQILIVDVRDPPAC 266

Length = 289

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 85.7 bits (213), Expect = 3e-19
 Identities = 67/229 (29%), Positives = 102/229 (44%), Gaps = 39/229 (17%)

Query: 62  WSLL--LKAFSGLL---ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFL 116
           W+L   LK  +G+L    L+CG      +N  +D  +D +N+PY PI +G +S++   +L
Sbjct: 58  WTLENVLKLLAGMLLAGPLLCG--TSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYL 115

Query: 117 VIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKR------FAVAAFLIIAT 170
           +    V GL  VA+  GP++     LGLFL  IYS PP R+K+      +AV        
Sbjct: 116 IAVLTVLGLA-VAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYE--- 171

Query: 171 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIS 230
                   G+ +   AA   +   + P+  +    +L A  I    D   VEGDR+  + 
Sbjct: 172 --------GLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLR 223

Query: 231 TLATKLGVKNIAFLGS-----------GLLLL---NYVAAILAAIYMPQ 265
           +L    G KN A +              LLL       AAI+  + +PQ
Sbjct: 224 SLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQ 272

Length = 314

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 77/238 (32%), Positives = 111/238 (46%), Gaps = 15/238 (6%)

Query: 62  WSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKV--NKPYLPIAAGDLSVQSAWFLVIF 119
              LL     LLAL+        +N  +D  ID    NKP  P+ +G +S + A  L + 
Sbjct: 19  VLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLA 78

Query: 120 FAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 179
             + GLL+     GP +  L  LGL LG +YS PP R+KR  +   L++    G L+  G
Sbjct: 79  LLLLGLLLALL-LGPLLLLLGLLGLLLGLLYS-PPLRLKRRPLLGELVVGLAFGLLILLG 136

Query: 180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK 239
            Y           +  +P+  +   V L +L I +T D+ DVEGDRK  I TL  +LG K
Sbjct: 137 AYAVGG-------DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRK 189

Query: 240 NIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTK 297
               L + LL     AA+L  + +       L++ A ++LA  LL    LL R N  +
Sbjct: 190 RALALYALLL----AAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEE 243

Length = 259

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 17/178 (9%)

Query: 75  LICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAF-NFG 133
           L+C  G +  IN IYDI IDK+NKP  PI +G +S++ A    I   + GL++  F N  
Sbjct: 48  LVCAGGNV--INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIY 105

Query: 134 PFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFE 193
            F+ +L  L   L  +Y+     +K+  +   LI+A + G    FG         GL+  
Sbjct: 106 AFLIAL--LNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFG---------GLAVF 151

Query: 194 WNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL 251
               +  +            + KD+ D+EGD K  + TL  K G+K   ++   LL+L
Sbjct: 152 NVLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLIL 209

Length = 279

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 71.5 bits (175), Expect = 3e-14
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 43/222 (19%)

Query: 72  LLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWFLVIF-FAVTGLL 126
           LL+  C  GY   IN  YD  ID +N+PY PI +G +S    +     L I   A+  +L
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 127 IV-AFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV----- 180
            + A +  P +  L   G F+  IYS PP ++K+             G+L NF +     
Sbjct: 120 DLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQ------------NGWLGNFALGASYI 167

Query: 181 ---YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLG 237
              ++A  A  G   E N  +A +T   ++  L IA+  D   VEGDR   + +L    G
Sbjct: 168 ALPWWAGHALFG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG 224

Query: 238 VKNIAFLGSGLLLL--------------NYVAAILAAIYMPQ 265
           ++  A++  G + +              N  AA L A+ +PQ
Sbjct: 225 IETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVALIIPQ 266

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 67/245 (27%), Positives = 99/245 (40%), Gaps = 28/245 (11%)

Query: 28  ACWRFLRPHTIRGTALGS-VALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGIN 86
           A    LRP       L + +A+V  A+I    L     LL   +   A    N     +N
Sbjct: 6   AYLELLRP----EHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGSANA----LN 57

Query: 87  QIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL 146
             +D  +D++N+P  PI +G +S + A  L I   + G LI A+   P    +  L   L
Sbjct: 58  DYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILG-LIAAYLISPLAFLVVILVSVL 116

Query: 147 GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVT 206
           G +Y+   +++K + +   L +A + G    FG             E N  V  + A   
Sbjct: 117 GILYN---WKLKEYGLIGNLYVAFLTGMTFIFGGIAVG--------ELNEAVILLAAMAF 165

Query: 207 LFALVIAVTKDLPDVEGDRKFKISTLATKLGVK-----NIAF--LGSGLLLLNYVAAILA 259
           L  L   + KD+ DVEGDR     TLA   G K       A   L   L  L Y+  I  
Sbjct: 166 LMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFN 225

Query: 260 AIYMP 264
            +Y+ 
Sbjct: 226 ILYLA 230

Length = 279

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 78  GNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA---WFLVIFFAVTGLLIVAFNFGP 134
           G G+   +N  +D+ +D+VN+P  PI +G LS + A     +V+  A+   + +  + G 
Sbjct: 62  GTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGG 121

Query: 135 ----FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGL 190
                I S    GLF+  IYS PP ++K+      L  A   GF   F  + +  A    
Sbjct: 122 ERGMVIISSILAGLFVAYIYSAPPLKLKK----NILTSAPAVGFSYGFITFLSANALFS- 176

Query: 191 SFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL 250
             +    V ++       A+ + +  D   VEGD++  + +L   +G KN  FL S  ++
Sbjct: 177 --DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKN-TFLVS-FII 232

Query: 251 LNYVAAILAAIYMPQAFRRNLMIPAHVILASCLL 284
           ++ V A+ A +    A+     +  + IL   +L
Sbjct: 233 IDLVFAVFAWL----AWSWGFTVLMYFILVGLVL 262

Length = 331

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 61  KWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFF 120
            W L+L     L+A   G G+   IN  +D  +D +N+P  PI +G +S++   +  +  
Sbjct: 35  HWWLML--LGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVL 92

Query: 121 AVTGLLIVAFNFGPFITSLYCL-GLFLGTIYSVPPFRMKR-FAVAAFLIIATVRGFLLNF 178
            V GLL VA   G ++  L+ + G+ L  IYS+PP ++KR   +    +  +  G     
Sbjct: 93  TVAGLL-VALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGL---- 147

Query: 179 GVYYATRAALG-LSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLG 237
             + A  A    L+++       +    +L A  I    D   VEGDR+  + +L   +G
Sbjct: 148 -PWMAGHAIFAPLTWQ----SVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIG 202

Query: 238 VKNIAFL 244
           VK  A +
Sbjct: 203 VKRAAIV 209

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 59/217 (27%), Positives = 86/217 (39%), Gaps = 39/217 (17%)

Query: 77  CGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS-----VQSAWFLVIFFAVTGLLIV-AF 130
              GY   IN  YD  ID +N+PY PI +G +S      Q    L+    +   L V A 
Sbjct: 134 FLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAG 193

Query: 131 NFGPFITSLYCLGLFLGTIYSVPPFRMKR------FAVAAFLIIATVRGFLLNFGVYYAT 184
           +  P +  L   G  L  IYS PP ++K+      +A+ A  I             ++A 
Sbjct: 194 HDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLP----------WWAG 243

Query: 185 RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK----- 239
           +A  G        V  +T   ++  L IA+  D   +EGDR   + +L    GV+     
Sbjct: 244 QALFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWI 300

Query: 240 -----NIAFLGSGLLLLN----YVAAILAAIYMPQAF 267
                +I  L     LL     Y A  L  + +PQ F
Sbjct: 301 CVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIF 337

Length = 375

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 63/228 (27%), Positives = 96/228 (42%), Gaps = 27/228 (11%)

Query: 41  TALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPY 100
            A    +LV  A +     I W LLL  F  L+A      YI  IN + D+  D +NKP 
Sbjct: 18  IAALGQSLVYMASLLLGLPISWLLLLITF--LIAAA---VYI--INYLTDLEEDIINKP- 69

Query: 101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAF----NFGPFITSLYCLGLFLGTIYSVPPF- 155
                   S   A+ L +   V GL + A+      GP    ++ + L LG +YSV    
Sbjct: 70  ---ERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKR 126

Query: 156 RMKRFAVAAFLIIATVRGFLLNF-GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAV 214
           R+KR  +   L+++ +        GVYY             + +     F+ L + +  +
Sbjct: 127 RLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIREI 179

Query: 215 TKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY 262
             D+ D+EGDRK  + TL   LG +        LL+LN +  IL  + 
Sbjct: 180 VFDIKDIEGDRKSGLKTLPIVLGKERTLKF---LLILNLLFLILLILG 224

Length = 285

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 15/186 (8%)

Query: 74  ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG 133
            L  G G    IN  +D  ID++N+P  PI +G +S + A    I     G+ + AF   
Sbjct: 48  FLATGAGN--AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVAL-AFLLP 104

Query: 134 PFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGL-SF 192
           P   ++      L  +Y+     +K         +A + G    FG      AA+G    
Sbjct: 105 PLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGG-----AAVGTEGL 156

Query: 193 EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN 252
                +  + A  TL   +I   KD+ D+EGDR     TL   +GV+   ++ +  LL+ 
Sbjct: 157 LALLVLFALAALATLAREII---KDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVA 213

Query: 253 YVAAIL 258
             A+ L
Sbjct: 214 VAASPL 219

Length = 276

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 85  INQIYDIGIDKVNKPYLPIAAGDLSVQSA-WFLVIFFAVTGLLIVAFNFGPFITSLYCLG 143
           IN  +D  IDK+N+P  P+  G +S ++A ++ ++ FAV   L    N   F+ +L    
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL--GA 113

Query: 144 LFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITA 203
             L  +Y+   +++K       +++A + G    +G     R  L       A    I A
Sbjct: 114 YVLMFLYA---WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGL-------AGYLAICA 163

Query: 204 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL 258
           F  L  +   + KD+ D+EGD+     TL   +G K  A++G+   +L  +A+ L
Sbjct: 164 F--LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFL 216

Length = 277

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 48/246 (19%), Positives = 81/246 (32%), Gaps = 20/246 (8%)

Query: 30  WRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIY 89
               RP T+       +   A A     +     + L A    + L          N  +
Sbjct: 12  LELARPKTLPAAIAPVIVGTALAFWYGKS-FNLLVALLALIAAILLQILVNLA---NDYF 67

Query: 90  DI--GIDKVNKPYLP----IAAGDLSVQSAWFLVIFF---AVTGLLIVAFNFGPFITSLY 140
           D   G D      L     I    +       L +F         +I+A      +  L 
Sbjct: 68  DYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG 127

Query: 141 CLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAF 200
            L +  G +Y+  PF +    +    +     G L+  G YY           W   +  
Sbjct: 128 LLCIAAGILYTGGPFPLGYMGLGEIFVGVFF-GPLIVLGAYYIQTG----RLSWAILLPS 182

Query: 201 ITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA 260
           +   + +    I +  +L D+E D +    TLA +LG KN   L + LL++ Y+A ++  
Sbjct: 183 LPVGILIAN--ILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFV 240

Query: 261 IYMPQA 266
           I     
Sbjct: 241 ILGLFP 246

Length = 303

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 15/239 (6%)

Query: 62  WSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KPYLPIAAGDLSVQSAWFLVIF 119
              L      L+A +      +  N+I D  ID  N      P+ +G +S + A  ++I 
Sbjct: 32  LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL 91

Query: 120 FAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG 179
                 L  ++   P    L  L L +  IY       KRF      ++    G      
Sbjct: 92  SLAL-FLSASYFLNPLAFILSPLVLLVLIIYPY----TKRFTFLCHYVL----GSTYGLA 142

Query: 180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVK 239
                 A +G    +          V  +     +   + D E DRK  + ++  + G+K
Sbjct: 143 PLAGWVAVIGTISFFLVAWLLGIG-VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIK 201

Query: 240 NIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKV 298
               + S   ++ ++  +L   Y+   +   + + A +++   L ++ ++++  + +K+
Sbjct: 202 AALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKI 257

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 25/106 (23%)

Query: 102 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFA 161
           P+A+G +SV+ A   ++   +  L ++     P    L    L L   Y   PF MKR  
Sbjct: 78  PLASGAVSVRQAILFLLVQLLVALGVL-LQLNPLTILLGVASLALVATY---PF-MKRI- 131

Query: 162 VAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTL 207
                               Y  +  LGL+F W A + +      L
Sbjct: 132 -------------------TYWPQLVLGLAFGWGALMGWAAVTGDL 158

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13105	282	ubiA prenyltransferase; Reviewed	99.98
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.97
PRK12872	285	ubiA prenyltransferase; Reviewed	99.97
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
PLN02776	341	prenyltransferase	99.97
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.97
PLN02922	315	prenyltransferase	99.97
PRK12875	282	ubiA prenyltransferase; Reviewed	99.97
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.97
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK13592	299	ubiA prenyltransferase; Provisional	99.96
PRK13591	307	ubiA prenyltransferase; Provisional	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
PRK08238	479	hypothetical protein; Validated	99.86
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.56
KOG4581	359	consensus Predicted membrane protein [Function unk	99.26
PRK12884	279	ubiA prenyltransferase; Reviewed	93.41
PRK13595	292	ubiA prenyltransferase; Provisional	92.13
PRK13592	299	ubiA prenyltransferase; Provisional	92.09
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	92.04
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	91.43
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	91.39
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	90.84
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	90.18
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	90.13
PRK12875	282	ubiA prenyltransferase; Reviewed	89.97
PRK12872	285	ubiA prenyltransferase; Reviewed	89.94
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	89.82
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	89.57
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	89.31
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	89.23
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	89.18
PLN00012	375	chlorophyll synthetase; Provisional	89.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.93
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	88.6
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	88.55
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	88.29
PLN02922	315	prenyltransferase	87.02
PRK12882	276	ubiA prenyltransferase; Reviewed	86.98
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	86.82
PRK13591	307	ubiA prenyltransferase; Provisional	86.7
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	86.3
PRK12873	294	ubiA prenyltransferase; Reviewed	86.17
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	85.36
PRK04375	296	protoheme IX farnesyltransferase; Provisional	84.84
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.72
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	84.07
PRK12392	331	bacteriochlorophyll c synthase; Provisional	83.61
PRK12888	284	ubiA prenyltransferase; Reviewed	83.57
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	82.71
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	82.3
PRK12895	286	ubiA prenyltransferase; Reviewed	82.23
PRK12874	291	ubiA prenyltransferase; Reviewed	81.97
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	81.23
PRK13362	306	protoheme IX farnesyltransferase; Provisional	80.48

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=8.9e-48  Score=355.28  Aligned_cols=290  Identities=34%  Similarity=0.567  Sum_probs=236.5

Q ss_pred             CCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhh
Q 021651           15 SDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGID   94 (309)
Q Consensus        15 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D   94 (309)
                      |+..+++.+..+++++|++|||+.+++.+++++....+....+...+...+...+...+....++.+++++||++|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            56677788889999999999999999999987544322222222233222322333334456677778889999999999


Q ss_pred             hhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHH
Q 021651           95 KVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGF  174 (309)
Q Consensus        95 ~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~  174 (309)
                      ++|||+||+++|++|+++++.+..++.++++.++. ..|+..+.+..++.++++.||.||+|+||+|..++++++...|.
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~  160 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV  160 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence            99999999999999999999999999888887764 47888888888889999999999999999999999999888898


Q ss_pred             HHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHH
Q 021651          175 LLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYV  254 (309)
Q Consensus       175 ~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~  254 (309)
                      .+.+|.+.+..+..+.+..+++..++++++.++++.++++.||++|+|+||+.|+||+|+++|+|++.+++..++.++|+
T Consensus       161 i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~  240 (308)
T PRK12887        161 IVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL  240 (308)
T ss_pred             HHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence            88888876554333333345566677788888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhc
Q 021651          255 AAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  307 (309)
Q Consensus       255 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (309)
                      ..+..+......+...++..+|++++.++.||.+.+|.+  |+++..+|||+.
T Consensus       241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~i  291 (308)
T PRK12887        241 GMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQ--DKQAIAQFYQFI  291 (308)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc--cchHHHHHHHHH
Confidence            888877665555555556699999999999999999886  788999999973

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=2.3e-42  Score=309.49  Aligned_cols=241  Identities=35%  Similarity=0.547  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Q 021651           64 LLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSL-YCL  142 (309)
Q Consensus        64 ~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~  142 (309)
                      .+...+.+.+++++++.|+.++||++|+|+||+|||+||+|||++|+++++.+...+.++|+.++.. .|+..+.. ...
T Consensus        21 ~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~-~g~~~l~~al~~   99 (280)
T PLN02878         21 FFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWI-VGSWPLFWALFV   99 (280)
T ss_pred             HHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HChHHHHHHHHH
Confidence            4444455667889999999999999999999999999999999999999999999999888877653 55543333 345


Q ss_pred             HHHHHhhccC--CccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhhhccccchHHHHHHHHHHHHHHHHHHHHccCC
Q 021651          143 GLFLGTIYSV--PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR-AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLP  219 (309)
Q Consensus       143 ~~~~~~~Ys~--pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  219 (309)
                      +.++++.||.  ||+|+||++++...+.....|....+|.|.+.. ..+|.+..++++.++..++++++..+++++||++
T Consensus       100 ~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~  179 (280)
T PLN02878        100 SFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIP  179 (280)
T ss_pred             HHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCc
Confidence            5688999997  999999999988887776666666777776533 3445444455566666667788889999999999


Q ss_pred             ChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHH
Q 021651          220 DVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVI  299 (309)
Q Consensus       220 D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  299 (309)
                      |+||||+.|+||+|+++|+|++.+++..+..++|+..+..+...+..+...+...||.+++..+++|.+++|.+  ++++
T Consensus       180 DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~--sk~~  257 (280)
T PLN02878        180 DVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLS--SKAA  257 (280)
T ss_pred             CchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcc--cHHH
Confidence            99999999999999999999999999999999999888888877767777788999999999999999999875  8889


Q ss_pred             HHHHHHhc
Q 021651          300 LATCCTLG  307 (309)
Q Consensus       300 ~~~~~~~~  307 (309)
                      ..+|||+.
T Consensus       258 i~~fY~fi  265 (280)
T PLN02878        258 ITSFYMFI  265 (280)
T ss_pred             HHHHHHHH
Confidence            99999973

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-39  Score=296.72  Aligned_cols=261  Identities=16%  Similarity=0.198  Sum_probs=200.4

Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCc
Q 021651           25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP  102 (309)
Q Consensus        25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rp  102 (309)
                      ++|.|+|++||++........   ..+++++.++.+++..+....++ ..+..+++|+  +||+.|+|+|++|+  |+||
T Consensus         2 ~~~~~~el~k~~~t~~al~~a---~~g~~lA~~~~~~~~~l~l~~~~-~~~~rsag~~--~Ndi~Dr~iD~~~~RT~~RP   75 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFI---LAGYVIAAGHYIHPIKILLILIA-AVSARTSAMS--INRIEGLRYDMINPRKKDWA   75 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHH---HHHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhcccCCCCcCCCCC
Confidence            368899999999975443333   33444444433444333333332 3466678887  99999999999996  5899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 021651          103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY  182 (309)
Q Consensus       103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~  182 (309)
                      +|+|++|++||+.+..++.++++.++ +..|+.++.+......+...|+    .+||++.++|+++|...|+ .++++|.
T Consensus        76 LpsG~is~~~A~~~~~~~~~~~~~~~-~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~-~~l~g~~  149 (286)
T PRK12895         76 LVSGRIKMREAIAFTIIFIAIFEICT-FLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGL-GVLAGYL  149 (286)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHh-HHHHHHH
Confidence            99999999999999999888887644 4578988877776666666776    7999999999999999995 6677787


Q ss_pred             HHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021651          183 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  262 (309)
Q Consensus       183 a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~  262 (309)
                      +.++.    .++....+++.+..++|+.++|++|++||+|+|++.|+||+|+++|++++.+++..++.++..+....+..
T Consensus       150 Av~g~----~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~  225 (286)
T PRK12895        150 AVIPA----FPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIY  225 (286)
T ss_pred             HHcCC----CCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            76542    23223334456777899999999999999999999999999999999999988888888888877777765


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHH-HHHHHhc
Q 021651          263 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVIL-ATCCTLG  307 (309)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~  307 (309)
                      .. +   ..|+++.++.+.++.|||..++++  |+++| ..||+-+
T Consensus       226 ~~-~---~~y~~~~~~~~~~l~~q~~~~~~~--~~~~~~~~~F~~N  265 (286)
T PRK12895        226 IR-T---LWYLAALIIIYTLVIYQHLIIDPR--NPINKRMSFFNAN  265 (286)
T ss_pred             Hh-h---HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHc
Confidence            43 3   356788888899999999999876  56677 5677654

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=8.3e-39  Score=293.67  Aligned_cols=269  Identities=17%  Similarity=0.163  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--   99 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~--   99 (309)
                      .+.++++|+|++||+++.++.+..++...++.++.++.+++..+...+++ ..+..+++|+  +||++|+|+|++|+|  
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg-~~~~~~a~~~--~Nd~~D~~iD~~~~Rt~   81 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILG-ALATSAAGCV--VNDLWDRDIDPQVERTR   81 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhccCCCCCccc
Confidence            35678999999999999888776665444555554444555544333332 3456788888  999999999988763  


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651          100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  179 (309)
Q Consensus       100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g  179 (309)
                      +||+|+|++|++|+..+..++.++++.++. ..|+.++.+.+.+.+..+.||    ..||++.++|++.|+..|+ .+++
T Consensus        82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l~  155 (290)
T PRK12870         82 FRPLASRRLSVKVGIVIAIVALLCAAGLAF-FLNPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIAWGF-AVLI  155 (290)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHHHHh-HHHH
Confidence            899999999999999999999888886654 478888877777777888998    5899999999988888775 4666


Q ss_pred             HHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651          180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA  259 (309)
Q Consensus       180 ~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~  259 (309)
                      +|.+.++.      .++..+++.+..++|+.+++++|++||+|+|+++|+||+|+++|++++.+++. ++.++.......
T Consensus       156 g~~a~~g~------~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~  228 (290)
T PRK12870        156 SWSAVTGH------LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAIL  228 (290)
T ss_pred             HHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHH
Confidence            77665532      23344556678889999999999999999999999999999999998887766 445544444455


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651          260 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      +.....+   ..|..+..+....+.||+..++++++||+.+.++|+.+-|
T Consensus       229 ~~~~~~~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~  275 (290)
T PRK12870        229 GVLLELH---LPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVW  275 (290)
T ss_pred             HHHhCCc---HHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhH
Confidence            5544433   2445667777889999999998888899999999987643

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-37  Score=286.37  Aligned_cols=265  Identities=18%  Similarity=0.170  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--C
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--P   99 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~   99 (309)
                      .+.++++|+|++||++.++...+..   .+++++.++.+++..+...+++ ..+..+++|+  +||++|+|+|++|+  |
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~---~g~~la~~~~~~~~~l~l~~lg-~~l~~~a~~~--~Nd~~D~diD~~~~RT~   84 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAY---LGAFVAIKGIPPISTLILIFLA-LFFLRTAGMT--NDNLADLEIDAKNPRTK   84 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHH---HHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhHHhccccCCCccC
Confidence            5678999999999999887765444   2334444444555544333332 3466778887  99999999999996  5


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651          100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  179 (309)
Q Consensus       100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g  179 (309)
                      +||+|+|++|++|++.+..++.+.++.+ ....|+.+..+...+.++.+.||    .+||++.++|+++|...|+.+. .
T Consensus        85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~-~~~ln~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~~-~  158 (300)
T PRK13106         85 NRPLVTGAIKISEAKALITAGLILFFAS-AYLVNRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQGLAVF-S  158 (300)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHHH-H
Confidence            8999999999999998876655544443 34578887777777777778897    6999999999999999887644 4


Q ss_pred             HHHHHHhhhhccc--cchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651          180 VYYATRAALGLSF--EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  257 (309)
Q Consensus       180 ~~~a~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i  257 (309)
                      ++.+.++....+.  ..+.+.+++.+..++|+.++|++|++||+|+|+|.|+||+|+++| +++++++..++.++..++.
T Consensus       159 G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~  237 (300)
T PRK13106        159 GAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDL  237 (300)
T ss_pred             HHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            4555443211000  011222334556779999999999999999999999999999999 8899999999999888888


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHh
Q 021651          258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTL  306 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  306 (309)
                      +.+.....+   ..|+.+..+...++.|||..++++    ++|.+-|+.
T Consensus       238 ~~~~~~~lg---~~y~~~~~~~~~~l~~~~~~~~~~----~~~~~~F~~  279 (300)
T PRK13106        238 LGDLYYGLG---PIAIAATILHGLIMAYAYYLASKK----GDFGRAFYY  279 (300)
T ss_pred             HHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHH
Confidence            877765555   356677777888999999998765    455555554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.3e-38  Score=285.80  Aligned_cols=270  Identities=20%  Similarity=0.173  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--C
Q 021651           23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--Y  100 (309)
Q Consensus        23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~--~  100 (309)
                      ++++++|+|++||+++.++.+..+....+.+.+.++.+++..+...++ ..+++.+++|+  +||+.|+|+|++|+|  +
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~-g~~l~~~a~~~--~Nd~~D~~iD~~~~RT~~   80 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIIL-GGLAVSGAGCI--ANDLWDRRIDRKVERTKN   80 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHH-HHHHHHHHHHH--HHHHHHHhhccCCCcCCC
Confidence            456889999999999998888777655555554433344443332332 24567778887  999999999999974  8


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651          101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN---FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  177 (309)
Q Consensus       101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~---~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~  177 (309)
                      ||+|+|++|+++++.+..++.++++.+....   .|+.+..+..++.+....||    .+||++.+++++.|+..+ .++
T Consensus        81 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~~a-~~~  155 (294)
T PRK12873         81 RPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALCWG-FAV  155 (294)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHHHH-hHH
Confidence            9999999999999999999888887665432   36777777777777888998    599999999988877655 467


Q ss_pred             HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651          178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  257 (309)
Q Consensus       178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i  257 (309)
                      +++|.+.++..    ++....+++.+..++|+.++|+++++||+|+|+++|+||+|+++|++ +.+....++.++.++..
T Consensus       156 l~gw~Av~g~~----~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~  230 (294)
T PRK12873        156 LIPWAAAEGSL----NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLA  230 (294)
T ss_pred             HHHHHHHhCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHH
Confidence            77887776432    33223344456778999999999999999999999999999999975 66666778888888777


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651          258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  308 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (309)
                      ..+.....++   .|.++.++.+..+.|||..+++++..+++|-+.|+-+-
T Consensus       231 ~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~  278 (294)
T PRK12873        231 LAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQV  278 (294)
T ss_pred             HHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhcc
Confidence            7777666553   45677778888999999999886544788888777543

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=3.2e-37  Score=282.45  Aligned_cols=267  Identities=20%  Similarity=0.144  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHH-HHHHHHhC-CCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--
Q 021651           23 SAFRDACWRFLRPHTIRGTALGSVAL-VARALIEN-PNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--   98 (309)
Q Consensus        23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~-~~~a~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--   98 (309)
                      ++++++|+|++|.+++.++.+..+.. +...+.+. ++.+++..++...++ ..++.+++|+  +||++|+|+|++|+  
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g-~~~~~~a~~~--~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCG-ALLLRGAGCT--INDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH-HHHHHHHHHH--HHhhHHhccccCCCCC
Confidence            46789999999999999887777533 33333332 333555544333222 3466677777  99999999999986  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651           99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  178 (309)
Q Consensus        99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~  178 (309)
                      |+||+|+|++|++|++.+..++.++++.+.. ..|+.++.+..++.+..+.||    .+||++.+++++.|...++ .++
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l  153 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGLTFNW-GAL  153 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHHHHHH-HHH
Confidence            4899999999999999999888888876654 468888888878888888998    5999999999988776554 456


Q ss_pred             HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651          179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  258 (309)
Q Consensus       179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~  258 (309)
                      .+|.+.++..    ++ .....+....++|+.++++++++||+|+|+++|+||+|+++|+++..+++ .++.+++.....
T Consensus       154 ~g~~av~g~~----~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~  227 (289)
T PLN02809        154 LGWAAVKGSL----DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLAL  227 (289)
T ss_pred             HHHHHHhCCC----Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHH
Confidence            6676655321    21 12222555667899999999999999999999999999999999666665 466777777766


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651          259 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      .+.....+   ..+..++.+.+..+.||+..++++  |+++|.+.|+.+.|
T Consensus       228 ~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~--~~~~~~~~F~~n~~  273 (289)
T PLN02809        228 SGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLS--SRADCNRKFVSNKW  273 (289)
T ss_pred             HHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCCH
Confidence            66654444   245567888888999999999876  67788888887653

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.3e-37  Score=282.02  Aligned_cols=259  Identities=16%  Similarity=0.177  Sum_probs=194.2

Q ss_pred             HHHHHHHhchhhHHHHHHHHH-HHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCc
Q 021651           26 RDACWRFLRPHTIRGTALGSV-ALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP  102 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~-~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rp  102 (309)
                      +++++|+.||+|.+.+..... +.+.+... .++.+++..+....++ ..+..+++|+  +||++|+|+|++|+  |+||
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~-~~l~~~a~~~--~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFA-SDGSVHWADLLLVTVA-MVGARTFAMA--ANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhCCCCCCCCCCCCC
Confidence            678999999999765433333 22222212 2344555544333332 3456677777  99999999999998  5899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 021651          103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY  182 (309)
Q Consensus       103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~  182 (309)
                      +|+|++|++|++.+...+..+++.++ ...|+.+..+..++.+..+.|+    .+||++.++|+..|+..++ .++++|.
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~~-~~l~g~~  151 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAA-ALLNPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQAV-GPVGAWI  151 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHHH-HHHHHHH
Confidence            99999999999998887776665543 3578888777777777778997    6999999999998887655 5667787


Q ss_pred             HHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021651          183 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  262 (309)
Q Consensus       183 a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~  262 (309)
                      ++++.      .+++.+++.+..++|+.+++++|++||+|+|+++|+||+|+++|+|++.+++..++.+++++..+.+..
T Consensus       152 a~~g~------~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~  225 (284)
T PRK12888        152 AVTGT------WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA  225 (284)
T ss_pred             HHcCC------CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76542      234445567788899999999999999999999999999999999999988888888877777766665


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHH-HHHH
Q 021651          263 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILA-TCCT  305 (309)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~  305 (309)
                      ...++   .|+++..+.+.++.|||..++++  |+++|. .||+
T Consensus       226 ~~~~~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~  264 (284)
T PRK12888        226 VGFGA---LWWIGLAITAGAFAYEHAIVSPT--DLSRVNRAFFT  264 (284)
T ss_pred             hCCcH---HHHHHHHHHHHHHHHHHHHcCcc--CHHHHHHHHHH
Confidence            45443   45667778889999999998776  555564 5553

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.6e-37  Score=282.00  Aligned_cols=267  Identities=21%  Similarity=0.217  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--   98 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--   98 (309)
                      ..+++++|+|++||+++.+..+...+...+...+.++. +++...+..+++ ..++.+++|+  +||++|+|+|++|+  
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~ll~~l~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIG-SVLMRSAGCI--INDIFDRKIDKHVART   79 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHH-HHHHHHHHHH--HHhHHHhhhccCCCcc
Confidence            35678999999999998876655554444444443332 455443333332 3466778888  99999999999876  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651           99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  178 (309)
Q Consensus        99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~  178 (309)
                      |+||+|+|++|++|++.+...+.++++.++. ..|+.+..+.+++.+..+.||    ..||++.+++++.|...++ .++
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~l  153 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILL-LLNKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTFNM-GIL  153 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHHHH-HHH
Confidence            4899999999999999999999888886654 468888888888888889998    4999998999888887665 456


Q ss_pred             HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651          179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  258 (309)
Q Consensus       179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~  258 (309)
                      ++|.+.++.      .++..+++.+..++|+.++++++++||+|+|+++|+||+|+++|+|++.++.....+..+..++.
T Consensus       154 ~~~~a~~g~------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~  227 (285)
T PRK12847        154 MAFAAVQNQ------LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL  227 (285)
T ss_pred             HHHHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            667665532      23455566778889999999999999999999999999999999999999887775555554433


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651          259 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                       +.....+   +.+..++.+..+.+.+|+..++++  |++++++.|+.+++
T Consensus       228 -~~~~~~~---~~~y~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~  272 (285)
T PRK12847        228 -GIISSLH---NIFYLAILAAAGIFYYQYKLLDFD--NPANCMYAFKANHY  272 (285)
T ss_pred             -HHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhHH
Confidence             2222222   122334445567888898877654  67788999998764

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.9e-37  Score=280.18  Aligned_cols=262  Identities=21%  Similarity=0.270  Sum_probs=188.9

Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651           26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA  105 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s  105 (309)
                      +|+|+|++||++...+.++...   ++..+.+...+.......++ ...+..+++|+  +||++|+|+|++|+|+||+++
T Consensus         4 ~~~~~~l~Rp~~~~~~~~~~~~---g~~~a~~~~~~~~~~~l~~l-~~~l~~~~~~~--~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          4 VRGYLELTRPVNAVVAGVAAFI---GAFIAGGILSSPSLTGLAFA-AVFLATGAGNA--INDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHH---HHHHhccccchHHHHHHHHH-HHHHHHHHHHH--HHHHhhhccccccCCCCCcCC
Confidence            6889999999999777766653   33333333223222222222 23466778888  999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651          106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR  185 (309)
Q Consensus       106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~  185 (309)
                      |++|++|++.++.++.+++++++. ..|+.+..+...+.++.+.||.   ++||++.++|++++...|..+.+|..... 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~-~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~-  152 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAF-LLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVG-  152 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhc-
Confidence            999999999999999998887665 4788877777777778889984   89999988999998888876555543221 


Q ss_pred             hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021651          186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQ  265 (309)
Q Consensus       186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~  265 (309)
                          .. . ....+.+.+..++++.+++++||+||+|+|+++|+||+|+++|+|++.+++...+++....+.........
T Consensus       153 ----~~-~-~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~  226 (276)
T PRK12882        153 ----TE-G-LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTF  226 (276)
T ss_pred             ----cc-c-hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                11 1 12233455666788899999999999999999999999999999999998877766655555433222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcCccccchHHHHHHHHhccC
Q 021651          266 AFRRNLMIPAHVILASCLLFQTW-LLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      +   ..|.+...+....+++... ..+.  +|++++++.|+++||
T Consensus       227 ~---~~y~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~~  266 (276)
T PRK12882        227 G---LWYLVLVAPADLVMLAAAYRSLKK--TDPTASQKLLKYGMF  266 (276)
T ss_pred             h---HHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence            3   2344554455445555433 3333  367899999999986

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-36  Score=279.40  Aligned_cols=265  Identities=20%  Similarity=0.205  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--C
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--P   99 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~   99 (309)
                      +.+++|+|+|++||++......+..   .+++++.++.+++..+...+++ +.+..+++|+  +||++|+|+|++|+  +
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~---~g~~lA~~~~~~~~~l~~~~l~-~~l~~~a~~~--~Nd~~D~~iD~~~~RT~   77 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAG---IGAVLAALGLPGASQLDWILMA-MVGARTAAMG--FNRLIDAEIDARNPRTA   77 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHH---HHHHHhccCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhccCCCCCCCC
Confidence            4567899999999999865544443   3333443333444433333332 3466677777  99999999999998  5


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651          100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  179 (309)
Q Consensus       100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g  179 (309)
                      +||+|+|++|++|+..+...+.++++ +.....|+.+..+..++.+....||    .+||++.+++++.|+..+ .++++
T Consensus        78 ~RPL~sG~is~~~A~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~-~~~l~  151 (291)
T PRK12886         78 GRAIPAGLISKGSAILFIVLSSLLML-FAAWFLNPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLA-LAPLG  151 (291)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHH-HHHHH
Confidence            89999999999999888655554443 3334578888777777777788998    589999999988888755 45677


Q ss_pred             HHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651          180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA  259 (309)
Q Consensus       180 ~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~  259 (309)
                      +|.++++.      .+.+.+++.+..++|+.++++++++||+|+|+++|+||+|+++|+++++++...++.+.+..++..
T Consensus       152 g~~a~~g~------~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~  225 (291)
T PRK12886        152 AWIAIRGT------IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFAL  225 (291)
T ss_pred             HHHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHH
Confidence            88776542      233445566777899999999999999999999999999999999999998877777777776666


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651          260 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  308 (309)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (309)
                      +.....+   ..|.++..+....+++|++..++++. ++.++++|+.+-
T Consensus       226 ~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~F~~~~  270 (291)
T PRK12886        226 GISAGLG---PWFLAGLAVTGILLLYEHWLLRGGDL-TRLDAAFFNMNG  270 (291)
T ss_pred             HHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHhH
Confidence            5543333   34566666777788899888865421 347788777653

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-36  Score=278.28  Aligned_cols=266  Identities=18%  Similarity=0.162  Sum_probs=192.7

Q ss_pred             HhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH--HhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc
Q 021651           20 NKVSAFRDACWRFLRPHTIRGTALGSVALVARAL--IENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN   97 (309)
Q Consensus        20 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~--~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n   97 (309)
                      +++++++|+|+|++||++.+.+....+.+...+.  ...++.+++..+...+++ ..+..+++|+  +||++|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~-~~l~~~a~~~--~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILA-AVSARNFAMA--FNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhhhhccccCC
Confidence            3567889999999999998877665553221111  111233455544333332 2355667777  9999999999999


Q ss_pred             C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHH
Q 021651           98 K--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL  175 (309)
Q Consensus        98 ~--~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~  175 (309)
                      +  |+||+|+|++|++|++.+...+.++++.++ +..|+.+..+.+........||    .+||++.++|++.|+..|+ 
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~-~~~n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g~~~~~-  152 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVS-YFINPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLGLSLGL-  152 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----hhcccccccHHHHHHHHHH-
Confidence            8  589999999999999999988887666554 3468887777666666788998    5999999999999888665 


Q ss_pred             HHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 021651          176 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA  255 (309)
Q Consensus       176 ~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~  255 (309)
                      +++.+|.+.++.    .+  ...+++.+..++|+.+++++|++||+|+|+++|+||+|+++|++++.++...++.+..+.
T Consensus       153 ~~l~G~~av~g~----~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~  226 (291)
T PRK12874        153 APIAGVVAVLGE----IP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLF  226 (291)
T ss_pred             HHHHHHHHHcCC----Cc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHH
Confidence            456667666532    22  333445667789999999999999999999999999999999999998877776665555


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Q 021651          256 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCT  305 (309)
Q Consensus       256 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (309)
                      ....+.....+   ..++++..+.+.++.||+...+.+  |++.++.||.
T Consensus       227 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~ff~  271 (291)
T PRK12874        227 WLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKD--FKKIDKAFFT  271 (291)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence            55444433322   234566767778888999888543  4445666654

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.9e-36  Score=277.13  Aligned_cols=246  Identities=25%  Similarity=0.369  Sum_probs=184.0

Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651           26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA  105 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s  105 (309)
                      +|+|+|++||++...+.++...+   +..+.+..+++..+...++ ...+..+++|+  +||++|+|+|++|+|+||+|+
T Consensus         3 ~~~~~~l~Rp~~~~~~~~~~~~g---~~la~~~~~~~~~~~l~~l-~~~l~~~~~~~--iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          3 IKAYFELIRPKNCIGASIGAIIG---YLIASNFKIDLKGIILAAL-VVFLVCAGGNV--INDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHH---HHHHccCCcchHHHHHHHH-HHHHHHHHHHH--HHhhcccccccccCCCCCcCC
Confidence            67899999999998777766533   2233332334443333333 23466778787  999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651          106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR  185 (309)
Q Consensus       106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~  185 (309)
                      |++|+++++.++..+..+++.++. ..|+.+..+.+++.+..+.||.   ++||++.++|+++|...|..+..|. .+.+
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~-~~~~  151 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSI-FINIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGG-LAVF  151 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHH-HHHc
Confidence            999999999999999988887665 4788888887788878899984   7999999999999999998755554 3332


Q ss_pred             hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021651          186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQ  265 (309)
Q Consensus       186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~  265 (309)
                      +      .  ...+++....++|+.+++++||+||+|+|+++|+||+|+++|+|++.+++...+.+....+.+.......
T Consensus       152 ~------~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~  223 (279)
T PRK09573        152 N------V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIF  223 (279)
T ss_pred             c------c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      1  2233355666789999999999999999999999999999999999999887766666655443322112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 021651          266 AFRRNLMIPAHVILASCLLFQTWLLERA  293 (309)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~  293 (309)
                      +   ..|..+.++....++|++.+.-++
T Consensus       224 ~---~~y~~~~~~~~~~~l~~~~~~~~~  248 (279)
T PRK09573        224 G---IYYLIVVIICDILFIIAMLILLKN  248 (279)
T ss_pred             H---HHHHHHHHHHhHHHHHHHHHHHcC
Confidence            2   346666667777888886655433

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.8e-36  Score=277.74  Aligned_cols=259  Identities=16%  Similarity=0.206  Sum_probs=193.3

Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc--CCCCcc
Q 021651           26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KPYLPI  103 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n--~~~Rpl  103 (309)
                      +|+|+|++||++..+......   ++++.+.++.+++..+...+++ ..++.+++|+  +||++|+|+|++|  +|+||+
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~---~g~~la~~~~~~~~~~~l~~l~-~~l~~~a~~~--~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAY---AGALLAAKGLPGLKTLILILIA-AVSARTAAMA--FNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHHHHHHcccCCCCccCCCCC
Confidence            689999999999876654443   3344443444555444333332 3466778888  9999999999999  468999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651          104 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA  183 (309)
Q Consensus       104 ~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a  183 (309)
                      |+|++|+++++.+..++.++++.++ ...|+.+..+...+.++.+.||    .+||++.++|++.|...|. +++++|.+
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~~~g~~a  149 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSAS-YFLNPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGL-APLAGWVA  149 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHH-HHHHHHHH
Confidence            9999999999999887766555444 3467777777767777788998    5899999999998888775 55666766


Q ss_pred             HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021651          184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM  263 (309)
Q Consensus       184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~  263 (309)
                      .++..    +.....+++.+..++|+.+++++||+||+|+|+++|+||+|+++|+|++.++...++.+++....+.+...
T Consensus       150 ~~g~~----~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  225 (282)
T TIGR01475       150 VIGTI----SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYV  225 (282)
T ss_pred             HhCCc----cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65422    21134445667788999999999999999999999999999999999999998888888887777666654


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHH-HHH
Q 021651          264 PQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILAT-CCT  305 (309)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~  305 (309)
                      +.+   ..|.++..+.+..+.++++..+++  |++++++ |+.
T Consensus       226 ~~g---~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ff~  263 (282)
T TIGR01475       226 GNG---YIALLALILIGLILAYEHYIVDPG--DQSKIQRAFFY  263 (282)
T ss_pred             hCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence            444   245566666677888898877654  5666765 444

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3.7e-36  Score=278.65  Aligned_cols=286  Identities=17%  Similarity=0.112  Sum_probs=201.3

Q ss_pred             cccccccCCCcCCCCchhHh-HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCC-----cccHHHHHHHHHHHHHH
Q 021651            2 LQNSASSQIGAAGSDPLLNK-VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPN-----LIKWSLLLKAFSGLLAL   75 (309)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~-----~~~~~~~~~~l~~~~~l   75 (309)
                      |.+.|++...+..+++..-+ .+.++++|+|++|.+++.++.+..+..+.+...+.+.     ..++..++..+++ ..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~-~~l   83 (314)
T PRK12878          5 QSSDATGRVADAPSGNWVDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVG-AIA   83 (314)
T ss_pred             CCCCCcccccccccccchhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHH-HHH
Confidence            55667888777777764433 6688999999995555444444444333333333321     3443333323332 346


Q ss_pred             HHHhccccccccccchhhhhhcC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCC
Q 021651           76 ICGNGYIVGINQIYDIGIDKVNK--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVP  153 (309)
Q Consensus        76 ~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~p  153 (309)
                      +.+++|+  +||++|+|+|++|+  ++||+++|++|++|++.+..++.++++.+.. ..|+.+..+.+.+.+..+.||  
T Consensus        84 ~~~a~~~--~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l~~~~~~~~~~Y~--  158 (314)
T PRK12878         84 MRGAGCT--YNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAIVAAYP--  158 (314)
T ss_pred             HHHHHHH--HHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH--
Confidence            6788888  99999999999876  4899999999999999999888888877654 468888888888888889997  


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccch
Q 021651          154 PFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLA  233 (309)
Q Consensus       154 P~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlp  233 (309)
                        .+||++.+++...|+..++ +++.+|.+.++.    .  ++..+++.+..++|+.+.+.++++||+|+|+++|+||+|
T Consensus       159 --~~KR~t~~~~~~~Gl~~~~-~~l~g~~a~~g~----~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slp  229 (314)
T PRK12878        159 --FMKRITWWPQFFLGLAFSW-GALMGWAAHFGS----L--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTA  229 (314)
T ss_pred             --HHHhcCCcchHHHHHHHHH-HHHHHHHHHhCC----C--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccc
Confidence              5999988888877776554 344457766542    2  234445566778999999999999999999999999999


Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651          234 TKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  308 (309)
Q Consensus       234 v~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (309)
                      +++|+++++++..... +......+.+.....+   ..++++.......+.+|+..++++  |+++++++|+.+.
T Consensus       230 v~~G~~~~~~~~~~~~-~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~n~  298 (314)
T PRK12878        230 RLFGDHTKTWLVLFYG-LAVLLMGLAFWLAGVP---LLALLGLLAAAAHLAWQIARLDID--DPDQCLRLFKSNR  298 (314)
T ss_pred             hHhchhhHHHHHHHHH-HHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcccC--ChHHHHHHHHHhH
Confidence            9999999988875443 3333333333332333   234455555566788998887654  5667889988764

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=5.3e-36  Score=275.56  Aligned_cols=270  Identities=23%  Similarity=0.278  Sum_probs=204.0

Q ss_pred             HhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC
Q 021651           20 NKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP   99 (309)
Q Consensus        20 ~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~   99 (309)
                      ...+++++.+.++.|+++++.+.+.....+.+...+.+..+++.......+ ..++..+++|+  +||+.|+|+|++|+|
T Consensus         4 ~~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~ag~~--iND~~D~eiD~~n~r   80 (289)
T COG0382           4 MSLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFL-AFFLARSAGYV--INDLADREIDRINPR   80 (289)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHhHH--HHHHhhhhccCCCCC
Confidence            345677888888899988887766666544444444333333222222221 23345566666  999999999999998


Q ss_pred             --CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651          100 --YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  177 (309)
Q Consensus       100 --~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~  177 (309)
                        +||+|+|++|+++++.+..++.++++.++. ..|+.++.+...+.++.+.|+    ++||++.++|++++...|+.+.
T Consensus        81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~~  155 (289)
T COG0382          81 TKNRPLPSGRVSVKEALLLAILLLLLGLALAL-LLNPLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGAL  155 (289)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHHH
Confidence              999999999999999999999988887654 578888888888889999994    8999999999999999888666


Q ss_pred             HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651          178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  257 (309)
Q Consensus       178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i  257 (309)
                      .|.. +..+      +..++.+++.+..++|+.+++++||++|+|+||+.|+||+|+.+|++++..++...+ +..+...
T Consensus       156 ~g~~-a~~~------~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~  227 (289)
T COG0382         156 AGAA-AVGG------SLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLV  227 (289)
T ss_pred             HHHH-HHhC------ccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHH
Confidence            5543 3321      123455667788889999999999999999999999999999999999999988877 3333333


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651          258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      ..+......  ...++.+..+.+..+.+|+..++.+  +++.+.++++.+++
T Consensus       228 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  275 (289)
T COG0382         228 LLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVR--DPPACFALFDVNLL  275 (289)
T ss_pred             HHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhccc--ChHHHHHHHHHhhH
Confidence            334332222  1356778888888999999998776  77888898888763

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.2e-36  Score=273.54  Aligned_cols=266  Identities=17%  Similarity=0.164  Sum_probs=193.4

Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhC------CC---cccHHHHHHHHHHHHHHHHHhccccccccccchhhhh
Q 021651           25 FRDACWRFLRPHTIRGTALGSVALVARALIEN------PN---LIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDK   95 (309)
Q Consensus        25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~------~~---~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~   95 (309)
                      +++.|.|+.|.+|.   +...+.++++++.+.      ++   .++|..+.+..++ .....+++|+  +||+.|+|+|+
T Consensus         3 ~~~~~~~~i~~~ht---~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~Rsag~~--~Nd~~DrdiD~   76 (300)
T PRK12876          3 RIKYFQQLINCKYA---LFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSA-FFCARTVGII--VNQIIDCAIDK   76 (300)
T ss_pred             hHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHHhcccC
Confidence            57889999999995   444444444454442      34   4567655433332 3345566677  99999999999


Q ss_pred             hcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHH
Q 021651           96 VNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRG  173 (309)
Q Consensus        96 ~n~~--~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G  173 (309)
                      +|+|  +||+|+|++|++|++.+...+.++++. .....|+.+..+..++.++.+.||    ++||+++++|++.|...+
T Consensus        77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~-l~~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~  151 (300)
T PRK12876         77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLS-LCWLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYY  151 (300)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHH
Confidence            9994  899999999999999999766555444 345689998888888888889998    699999999998888776


Q ss_pred             HHHHHHHHHHHHhhhhccccchH--HHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHH
Q 021651          174 FLLNFGVYYATRAALGLSFEWNA--PVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLL  251 (309)
Q Consensus       174 ~~~~~g~~~a~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~  251 (309)
                      + .+.++|.+..+.   +.++..  ..++..+..++|..++|++|++||+|+||+.|+||+|+++|++++.+++..++.+
T Consensus       152 ~-~~l~~~~Av~~~---~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l  227 (300)
T PRK12876        152 L-AILMNFFAIIET---PLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA  227 (300)
T ss_pred             H-HHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence            6 566667665431   112100  2233455667888899999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHH-HhcCccccchHHHHHHHHhccC
Q 021651          252 NYVAAILAAIYMPQAFRRNLMIPAHVILASCL-LFQT-WLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       252 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      +....+..+.....++  .+|+.+.++.+..+ .+|| ..++  +++++.+.+||+.+.|
T Consensus       228 ~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~F~~N~~  283 (300)
T PRK12876        228 SAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLID--KKKSTLEQKFFLGNIY  283 (300)
T ss_pred             HHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcC--CCchHHHHHHHHhcCH
Confidence            8887777776655553  23555555444444 5666 5553  3467788899987654

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=4.6e-36  Score=282.69  Aligned_cols=233  Identities=21%  Similarity=0.287  Sum_probs=170.9

Q ss_pred             ccccCCCcCCCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHH------HHHHHHHHHHHHHH
Q 021651            5 SASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL------LLKAFSGLLALICG   78 (309)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~------~~~~l~~~~~l~~~   78 (309)
                      +.+.+-|..+++.. +.-.+++|+|++++||++++...++++++.+   . .+ ..+|..      ++..++ ...++.+
T Consensus        65 ~~~~~~~~~~~~~~-~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~---~-~g-~~~~~~~~~~~~ll~~ll-~~~L~~~  137 (375)
T PLN00012         65 GGSAVNQLLGIKGA-AQETDIWKIRLQLTKPVTWPPLVWGVLCGAA---A-SG-NFHWTLEDVAKSIVCMLM-SGPFLTG  137 (375)
T ss_pred             cchhhHHhhCCCCc-ccchHHHHHHHHHhCHHHHHHHHHHHHHHHH---H-cC-CCCchhhhHHHHHHHHHH-HHHHHHH
Confidence            33444455555555 3346788999999999999877776664332   2 22 233331      111222 2345667


Q ss_pred             hccccccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHhhccC
Q 021651           79 NGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSV  152 (309)
Q Consensus        79 ~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~------~~~~~~~l~~~~~~~~~~Ys~  152 (309)
                      ++|+  +|||+|+|+|++|+|+||+++|++|+++++.....+..+++.++.+.      .++..+.+.++++++.++||.
T Consensus       138 ~an~--iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~  215 (375)
T PLN00012        138 YTQT--INDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA  215 (375)
T ss_pred             HHHH--HHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC
Confidence            7777  99999999999999999999999999999887766666665554332      256666677778888999999


Q ss_pred             CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccc
Q 021651          153 PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTL  232 (309)
Q Consensus       153 pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tl  232 (309)
                      ||+++||++++||+.+|...+..+.++++ +..+      .+++..+++++..+++..+++++||++|+|+|+++|+||+
T Consensus       216 pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a~~g------~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TL  288 (375)
T PLN00012        216 PPLKLKQNGWIGNYALGASYISLPWWAGQ-ALFG------TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSL  288 (375)
T ss_pred             CchhhhHhccHhHHHHHHHHHHHHHHHHH-HHcC------CCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCccc
Confidence            99999999999999888887766655554 3222      2334555566778899999999999999999999999999


Q ss_pred             hhhhchhhHHHHHHHHHHHHH
Q 021651          233 ATKLGVKNIAFLGSGLLLLNY  253 (309)
Q Consensus       233 pv~~G~~~~~~l~~~~~~~~~  253 (309)
                      ||++|++++++++..++.+..
T Consensus       289 pV~~G~~~a~~l~~~~l~l~~  309 (375)
T PLN00012        289 PVAFGVETAKWICVGSIDITQ  309 (375)
T ss_pred             ceeechHHHHHHHHHHHHHHH
Confidence            999999999998765444443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=5e-36  Score=274.67  Aligned_cols=265  Identities=18%  Similarity=0.168  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CC
Q 021651           23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PY  100 (309)
Q Consensus        23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~  100 (309)
                      ++++++|+|++|++++..+.+..+....+..++.++.+++..+...+++ ..+..+++|+  +||++|+|+|++|+  |+
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~~~~l~~~g-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~   78 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVVFVLG-VFLMRAAGCV--INDYADRDFDGHVKRTKN   78 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhhHHhccCCCCCCCCC
Confidence            3568999999999998877766554444444443444454433333332 2356678888  99999999999876  48


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q 021651          101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV  180 (309)
Q Consensus       101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~  180 (309)
                      ||+|+|++|++++..++..+..+++.++. ..|+.+..+...+.+..+.|+    ..||++.+++++.++..|+.+ ..+
T Consensus        79 RPl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~g~~~-~~g  152 (282)
T PRK12848         79 RPLASGAVSEKEALALFVVLVLVAFLLVL-TLNTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAFGWGI-PMA  152 (282)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHHHHHH-HHH
Confidence            99999999999999999999888876553 578888777777777888996    589999899998888888754 445


Q ss_pred             HHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 021651          181 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA  260 (309)
Q Consensus       181 ~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~  260 (309)
                      |.+.++.      .+...+++.+..++|+...+..+++||+|+|+++|+||+|+++|+|++.+... ++.+........+
T Consensus       153 ~~a~~~~------~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~~  225 (282)
T PRK12848        153 FAAVQGS------VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLALLAWAG  225 (282)
T ss_pred             HHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHHHHHHHH
Confidence            6665432      23344556677889999999999999999999999999999999998888764 3444343333334


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651          261 IYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  308 (309)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (309)
                      .....+   ..|.++..+....+.||+..++++  |+++|.+.|+-+.
T Consensus       226 ~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~F~~n~  268 (282)
T PRK12848        226 WLLGLG---WAYYWGLLVAAALFVYQQKLIRDR--EREACFKAFLNNN  268 (282)
T ss_pred             HHhcCc---HHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHhCc
Confidence            333333   345566777788999999977664  6677877776554

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=7.3e-36  Score=277.75  Aligned_cols=253  Identities=22%  Similarity=0.266  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCC-cccHHHHH--HHHHH-HHHHHHHhccccccccccchhhhhhc
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPN-LIKWSLLL--KAFSG-LLALICGNGYIVGINQIYDIGIDKVN   97 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~-~~~~~~~~--~~l~~-~~~l~~~~~~~~~~Nd~~D~~~D~~n   97 (309)
                      +.+++|+|+|++||++++ ..++..  +.+. ++.+. .+++..+.  ..... ...+..+++++  +||++|+|+|++|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~--~g~~-lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~--iND~~D~~~D~~n   81 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCL--AGGV-MASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS--VNDYFDLELDRVN   81 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHH--HHHH-HHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhH--HhcceeecccccC
Confidence            466789999999999876 333333  2222 22221 12222111  11110 11233455666  9999999999999


Q ss_pred             CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHH
Q 021651           98 KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNF-------GPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIAT  170 (309)
Q Consensus        98 ~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~-------~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~  170 (309)
                      +|+||+++|++|+++++.+..++..+++.++.+..       ++..+...+++.+++++||.||+++||+++.++..+++
T Consensus        82 ~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl  161 (331)
T PRK12392         82 EPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGF  161 (331)
T ss_pred             CCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHH
Confidence            99999999999999999999998888877665321       12222333466778999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHH
Q 021651          171 VRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLL  250 (309)
Q Consensus       171 ~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~  250 (309)
                      .+|+.+..+. .+..   +   +.++..+++.+..++|+.+++++||++|+|+|++.|+||+|+++|++++.+++...+.
T Consensus       162 ~~~~~~~~~~-~a~~---g---~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~  234 (331)
T PRK12392        162 SYGFITFLSA-NALF---S---DIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIID  234 (331)
T ss_pred             HHHHHHHHHH-HHHh---c---CCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHH
Confidence            8776544333 2222   2   2234445566777899999999999999999999999999999999999999887766


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021651          251 LNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLL  290 (309)
Q Consensus       251 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  290 (309)
                      ++....+..+....+++   .+....++++.++.+|....
T Consensus       235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        235 LVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence            77776666666555542   23344555666778887755

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=1.5e-36  Score=278.39  Aligned_cols=221  Identities=22%  Similarity=0.251  Sum_probs=165.6

Q ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651           27 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA  105 (309)
Q Consensus        27 ~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s  105 (309)
                      |+|+|++||++++....+...+.+.+ ...++. .++...+...+....++.+++|+  +|||+|+|+|++|+|+||+++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a-~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~--~Nd~~D~~~D~~~~~~Rpi~~   77 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALAS-GYERGFPEHWWLMLLGMLMAGPLGTGFSQS--INDYFDRDVDAINEPQRPIPS   77 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhc-cCCCCcchhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhCcccCCCCCCCCCC
Confidence            46889999999988777776433211 011222 33443222111123456677777  999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651          106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR  185 (309)
Q Consensus       106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~  185 (309)
                      |++|+++++.+..++..+++.++.+..++....+..++.+.++.||.||+++||+++++|+.++...+..+..+++.+..
T Consensus        78 G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~  157 (283)
T TIGR01476        78 GIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA  157 (283)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999888888776544344435566677788999999999999999889999888777655555554321


Q ss_pred             hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651          186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  257 (309)
Q Consensus       186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i  257 (309)
                             +.++..++.++..++++.+++.+||+||+|+||++|+||+|+++|+|++++++..+..+.+...+
T Consensus       158 -------~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  222 (283)
T TIGR01476       158 -------PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVI  222 (283)
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence                   12344455566777889999999999999999999999999999999999998877666665544

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=9e-36  Score=272.75  Aligned_cols=263  Identities=20%  Similarity=0.196  Sum_probs=192.5

Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCC
Q 021651           26 RDACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYL  101 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~R  101 (309)
                      +++|.|++|++++.++.+..++...+...+..  +.+++..+...+++ ..+..+++|+  +||++|+|+|++|+  |+|
T Consensus         1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~-~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~R   77 (281)
T TIGR01474         1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVG-AILMRGAGCV--INDIWDRDFDPQVERTKSR   77 (281)
T ss_pred             ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH-HHHHHHHHHH--HHhHhhhcccccCCcccCC
Confidence            36799999999998777666654444444432  33345433322222 3456678888  99999999999876  489


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 021651          102 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY  181 (309)
Q Consensus       102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~  181 (309)
                      |+|+|++|++|++.+..++.++++.++. ..|+.+..+.+++.+..+.||    .+||++.++++..|+..++. ++.+|
T Consensus        78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~-~~~g~  151 (281)
T TIGR01474        78 PLASGAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWG-ALMGW  151 (281)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHH-HHHHH
Confidence            9999999999999999999888887654 478888888888888899998    59999999999888776654 44456


Q ss_pred             HHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 021651          182 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI  261 (309)
Q Consensus       182 ~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~  261 (309)
                      .+.++    .  .++..+++....++|+.++++++++||+|+|+++|+||+|+++|+|++++.. .++.+......+.+.
T Consensus       152 ~a~~g----~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~  224 (281)
T TIGR01474       152 AAVTG----D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILLLALAGL  224 (281)
T ss_pred             HHHcC----C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence            65543    2  2334444566778999999999999999999999999999999998865543 344444444434443


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651          262 YMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      ....+   ..|.++..+.+..+.+++..+++  +|+++++++|+.+++
T Consensus       225 ~~~~~---~~y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~F~~~~~  267 (281)
T TIGR01474       225 IAGLG---PVYYLGLAAAALLLIRQIATLDI--RDPENCLKLFKANNY  267 (281)
T ss_pred             HhCCc---HHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhH
Confidence            32223   34556677778899999998754  367788999998864

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=9.2e-36  Score=276.54  Aligned_cols=235  Identities=25%  Similarity=0.348  Sum_probs=176.3

Q ss_pred             cCCCcCCCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHH-----HHHHHHHHHHHHHHhccc
Q 021651            8 SQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSL-----LLKAFSGLLALICGNGYI   82 (309)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-----~~~~l~~~~~l~~~~~~~   82 (309)
                      ..-|.-+|+.-- ...+++++|++++||+++..+..+...+.+   .. +. .++..     +....+....+..+++|+
T Consensus        10 ~~~~~~~~~~~~-~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~---~~-~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~   83 (314)
T PRK07566         10 KPRQLLGPKGAS-PTTSIWKARLQLMKPITWFPPMWAFLCGAV---SS-GA-FGWTLENVLKLLAGMLLAGPLLCGTSQT   83 (314)
T ss_pred             cccccccccccc-ccchHHHHHHHHhCCcchHHHHHHHHHHHH---Hc-CC-CCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555432 235778999999999998766666553222   22 11 22222     111111123356677787


Q ss_pred             cccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchh
Q 021651           83 VGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAV  162 (309)
Q Consensus        83 ~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~  162 (309)
                        +|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.++. ..++....+.+++.+..+.||.||+++||+++
T Consensus        84 --~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~  160 (314)
T PRK07566         84 --LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLFLAWIYSAPPLRLKQNGW  160 (314)
T ss_pred             --HhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence              999999999999999999999999999999999988888887654 46887777777788889999999999999998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHH
Q 021651          163 AAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIA  242 (309)
Q Consensus       163 ~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~  242 (309)
                      ++|+.++...|..++++++.+.++   .  .+++..++.++..+++..+++.+||++|+|+||++|+||+|+++|+++++
T Consensus       161 ~g~i~vg~~~g~~~~~~g~~~~~~---~--~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~  235 (314)
T PRK07566        161 LGNYAVGLSYEGLPWWAGAAAFGA---G--LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAA  235 (314)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcc---C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHH
Confidence            899999998887766666654431   1  22345555666777888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 021651          243 FLGSGLLLLNYVAA  256 (309)
Q Consensus       243 ~l~~~~~~~~~~~~  256 (309)
                      +++..+..+.++..
T Consensus       236 ~l~~~l~~~~~~~~  249 (314)
T PRK07566        236 RIACVVIDLFQLAV  249 (314)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98877766666654

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.4e-35  Score=270.02  Aligned_cols=263  Identities=24%  Similarity=0.326  Sum_probs=188.4

Q ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcc
Q 021651           24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPI  103 (309)
Q Consensus        24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl  103 (309)
                      +++++|+|++||++.+.+.++...   ++..+.++.+++. +...++ ...+..+++|+  +||++|+|+|++|+|+||+
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~---g~~la~~~~~~~~-~~l~~l-~~~l~~~a~~~--~Nd~~D~~~D~~~r~~Rpl   74 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVL---GAIIALGGLPLDE-ALLGFL-TAFFASGSANA--LNDYFDYEVDRINRPDRPI   74 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHH---HHHHHCCCCchHH-HHHHHH-HHHHHHHHHHH--HHhhhhHhhhhccCCCCCC
Confidence            468999999999999877766553   3333433322222 222222 24466777787  9999999999999999999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651          104 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA  183 (309)
Q Consensus       104 ~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a  183 (309)
                      ++|++|+++++.++.++.++++.++. ..|+....+.+++.+.++.||.   ++||+++++|++++...|..+..|.. +
T Consensus        75 ~~G~is~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~-~  149 (279)
T PRK12884         75 PSGRISRREALLLAILLFILGLIAAY-LISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGI-A  149 (279)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHH-H
Confidence            99999999999999998888887665 4688877777778888899984   79999988999998887765444433 2


Q ss_pred             HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021651          184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM  263 (309)
Q Consensus       184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~  263 (309)
                      ..    .   .....+.+....++|+.+.++.+|++|+|+|+++|+||+|+++|+|++.++...++.+.+++++......
T Consensus       150 ~~----~---~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12884        150 VG----E---LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG  222 (279)
T ss_pred             hC----C---CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21    1   1124445566778899999999999999999999999999999999999988887777776555443322


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCccc--cchHHHHHHHHhcc
Q 021651          264 PQAFRRNLMIPAHVILASCLLFQTWLLERAN--YTKVILATCCTLGM  308 (309)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~  308 (309)
                      ..+   ..|.....+....+++++...-+++  ++..+.++.++.+|
T Consensus       223 ~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (279)
T PRK12884        223 IFN---ILYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTAM  266 (279)
T ss_pred             Hhh---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            222   2455556666777888875443222  22233444555544

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=3.9e-35  Score=271.41  Aligned_cols=223  Identities=24%  Similarity=0.327  Sum_probs=169.9

Q ss_pred             hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHH-----HHHHHHHHHHHHHhccccccccccchhhhh
Q 021651           21 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLL-----LKAFSGLLALICGNGYIVGINQIYDIGIDK   95 (309)
Q Consensus        21 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~   95 (309)
                      ...+++|+|+|++||++++...+++..+.   ... ++ .++...     ....+....++.+++|+  +|||+|+|.|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~---~~~-~~-~~~~~~~~~~~ll~~ll~~~l~~~~~n~--~NDy~D~d~D~   83 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGA---AAS-GN-FHWSLEDVAKAALCMLLSGPCLTGYTQT--INDFYDRDIDA   83 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHH---HHc-CC-CCcchhhHHHHHHHHHHHHHHHHHHHHH--HHhHhhhhhhc
Confidence            45677899999999999987777665332   222 22 333221     11111223466677777  99999999999


Q ss_pred             hcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHH
Q 021651           96 VNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN------FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA  169 (309)
Q Consensus        96 ~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~------~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~  169 (309)
                      .|+|+||+++|++|+++++.+...+..+++.++.+.      .++..+.+.+++.++++.||.||+++||++++||+.++
T Consensus        84 ~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        84 INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG  163 (306)
T ss_pred             cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence            999999999999999999999988888787666432      13566777778888899999999999999988999888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHH
Q 021651          170 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLL  249 (309)
Q Consensus       170 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~  249 (309)
                      ...+..+..+++ +.++      ++++..++.++..++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..+.
T Consensus       164 ~~~~~~~~~~~~-a~~g------~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~  236 (306)
T TIGR02056       164 ASYIALPWWAGH-ALFG------ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAI  236 (306)
T ss_pred             HHHHHHHHHHHH-HHhC------CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence            877776665554 2222      233455566777788999999999999999999999999999999999999988776


Q ss_pred             HHHHHHHH
Q 021651          250 LLNYVAAI  257 (309)
Q Consensus       250 ~~~~~~~i  257 (309)
                      ..++...+
T Consensus       237 ~~~~~~~~  244 (306)
T TIGR02056       237 DIFQGLIA  244 (306)
T ss_pred             HHHHHHHH
Confidence            66555443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.6e-35  Score=272.92  Aligned_cols=266  Identities=16%  Similarity=0.181  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CC
Q 021651           23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PY  100 (309)
Q Consensus        23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~  100 (309)
                      ++++++|+|++||++......+...   ++..+.++.+++..+...++ ...+.++++|+  +||++|+|+|++|+  |+
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~---G~~la~~~~~~~~~~~l~~l-~~~l~~aa~~~--iNd~~D~~iD~~~~Rt~~   80 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALG---GMLLAPPGVPPLLLLLLTLL-GIALVAGAAGA--LNNYIDRDIDAKMERTKN   80 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHH---HHHHhcCCCCCHHHHHHHHH-HHHHHHHHHHH--HHhHHhhccCCCCCccCC
Confidence            5678999999999998766666553   33344333445544433333 23466788888  99999999999988  68


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651          101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  179 (309)
Q Consensus       101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g  179 (309)
                      ||+|+|++|++|++.++..+.++++.++.+..|+.+..+..++.+ ..+.||.   ++||++. +|..++...|..++++
T Consensus        81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~~g~~~~l~  156 (296)
T PRK04375         81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGAAGAMPPLI  156 (296)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHHHHHhHHHH
Confidence            999999999999999999998888877655457766666555544 4678983   6999985 6777777777777777


Q ss_pred             HHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651          180 VYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA  259 (309)
Q Consensus       180 ~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~  259 (309)
                      +|.++++      +.++..+++.+..++|..+.+..++++|+|+|+++|+||+|+++|++++++++...+.+.....+..
T Consensus       157 g~~a~~g------~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~  230 (296)
T PRK04375        157 GWAAVTG------SLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLP  230 (296)
T ss_pred             HHHHhCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877653      2234445567788899999999999999999999999999999999999888777666655544443


Q ss_pred             HHhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651          260 AIYMPQAFRRNLMIP-AHVILASCLLFQTWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       260 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      ......++   .|.+ +..+.+..+.+++...+++  |++++++.|+.++|
T Consensus       231 ~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~F~~s~~  276 (296)
T PRK04375        231 VLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKD--DRKWARKLFRYSIN  276 (296)
T ss_pred             HHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHH
Confidence            33221222   2333 4444566677788777654  57789999998875

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.7e-34  Score=264.05  Aligned_cols=263  Identities=17%  Similarity=0.120  Sum_probs=187.7

Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCc
Q 021651           25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLP  102 (309)
Q Consensus        25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rp  102 (309)
                      ++|+|+|++||++.....++...   ++..+.++.+++..+....+ ...+..+++|+  +||++|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~---g~~la~~~~~~~~~~~l~~~-~~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~RP   74 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVA---GYFLAAKHGVSWLPLIPLLI-GGTLASGGSAA--FNHGIERDIDKVMSRTSKRP   74 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHH---HHHHhccCCCCHHHHHHHHH-HHHHHHHHHHH--HhchHhcCCCCCCCCCCCCC
Confidence            36889999999997665555553   33344333345443332222 34466788888  99999999999988  6899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 021651          103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSL-YCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY  181 (309)
Q Consensus       103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~  181 (309)
                      +|+|++|++|+..++..+..+++.++.+..|+....+ .+...+..+.||.   ++||++++ |..++...|..+++|+|
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~l~g~  150 (279)
T PRK12869         75 TPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGNAAALAGY  150 (279)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888877665467765433 3334457789983   79999974 66777778888999999


Q ss_pred             HHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 021651          182 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI  261 (309)
Q Consensus       182 ~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~  261 (309)
                      .++++.      .+...+++.+..++|..+.....+++|+|+|+++|+||+|+++|+|++.+....++.+....+...+.
T Consensus       151 ~a~~g~------~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~  224 (279)
T PRK12869        151 ASGTGS------LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL  224 (279)
T ss_pred             HHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887642      23444556677788998887777889999999999999999999999998887776665555544433


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH-HHhcCccccchHHHHHHHHhccC
Q 021651          262 YMPQAFRRNLMIPAHVILASCLLFQ-TWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                       ...+   ..|.+...+....++++ ....+ ++ +++++++.|+.+.|
T Consensus       225 -~~~g---~~y~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~f~~s~~  267 (279)
T PRK12869        225 -YYIG---LIGLILVAILSAALMATSIRALL-NP-TKEEAWKMFKASSP  267 (279)
T ss_pred             -hhcc---HHHHHHHHHHHHHHHHHHHHHhh-CC-ChHHHHHHHHHHHH
Confidence             2223   34555555444545544 44443 32 46678888887643

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=1.7e-34  Score=264.43  Aligned_cols=264  Identities=17%  Similarity=0.137  Sum_probs=192.0

Q ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCcc
Q 021651           27 DACWRFLRPHTIRGTALGSVALVARALIENPNL-IKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPI  103 (309)
Q Consensus        27 ~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl  103 (309)
                      |+|+|++||++.....+++..+   +..+.+.. +++..+....+ ...++.+++|+  +||++|+|+|++|+  |+||+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g---~~la~~~~~~~~~~~~l~~~-~~~l~~~a~~~--~Nd~~D~~iD~~~~Rt~~Rpl   74 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAG---MWLAPGGALVNPPLLLLTLL-GTTLAAASANA--FNMYIDRDIDKKMKRTRNRPL   74 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHH---HHHhCCCCCCCHHHHHHHHH-HHHHHHHHHHH--HHhhcccCcCCCCCCCCCCCC
Confidence            4689999999997776666533   33333322 45544433333 23466778888  99999999999987  68999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 021651          104 AAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYY  182 (309)
Q Consensus       104 ~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~  182 (309)
                      ++|++|++++..++..+.++|+.+.....|+....+..++.++ .+.||.   .+||++.+ +..++...|..+++++|.
T Consensus        75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        75 VTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888755545788777776666654 789984   68999876 455666778888889888


Q ss_pred             HHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 021651          183 ATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIY  262 (309)
Q Consensus       183 a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~  262 (309)
                      +.++.      .++..+++.+..++|+...+...+++|+|+|+++|+||+|+++|+|++.+.....++.....+.+.+..
T Consensus       151 a~~g~------~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~  224 (280)
T TIGR01473       151 AVTGS------ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFL  224 (280)
T ss_pred             HhcCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76542      233444566677889988888888999999999999999999999999888777766655555544443


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhccC
Q 021651          263 MPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGMW  309 (309)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (309)
                      ...++  .++..+..+....+.+++...+++ .|++++++.|+.+||
T Consensus       225 ~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~f~~s~~  268 (280)
T TIGR01473       225 GGTGW--LYLIVATLLGALFLYLAFKFYRDP-TDRKKARKLFKFSLI  268 (280)
T ss_pred             hcccH--HHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHH
Confidence            33332  122345555566777888777644 356789999998875

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=2.5e-34  Score=260.77  Aligned_cols=217  Identities=20%  Similarity=0.092  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccH--HHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCC
Q 021651           23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKW--SLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPY  100 (309)
Q Consensus        23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~  100 (309)
                      .+.++.+++.+||.+++.+..+..+++   ..+ ++..+|  ..+   ++++.+++..+..+|++||++|+|+|++|+|+
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~---~~~-g~~~~~~~~~~---~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGV---WLT-GHLYTLDPGVL---PLLLYLTLPFNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHH---HHh-cCcccchhHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence            456677899999999988877776433   222 334555  322   22234455566666779999999999999999


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651          101 LPIAAGDLSVQSAWFLVIFFAVTGLL---IVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  177 (309)
Q Consensus       101 Rpl~sG~ls~~~a~~~~~~~~~~~~~---l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~  177 (309)
                      ||+++|++|+++++.+...+...++.   ...+..++.+..+.+++.++.+.||.||+|+|++|+++++++ ...|.  +
T Consensus        82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~--p  158 (292)
T PRK13595         82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYAL--P  158 (292)
T ss_pred             CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHH--H
Confidence            99999999999998876655444321   223456788777777888999999999999999999999887 34454  3


Q ss_pred             HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651          178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  257 (309)
Q Consensus       178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i  257 (309)
                      .+...+..   |..  ..+..   .+..++|..++|+++++||+|+||+.|+||+|+++|+|++.+++..+.+++.+...
T Consensus       159 ~~~~~~~~---g~~--~~~~~---l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~  230 (292)
T PRK13595        159 LALPALAL---GAP--VPWPP---LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW  230 (292)
T ss_pred             HHHHHHHc---CCc--chHHH---HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence            33333322   211  11121   23446888999999999999999999999999999999999999887666555443

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1e-33  Score=261.31  Aligned_cols=270  Identities=15%  Similarity=0.128  Sum_probs=191.4

Q ss_pred             hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--
Q 021651           21 KVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--   98 (309)
Q Consensus        21 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--   98 (309)
                      ..+.++|+|++++||+++....+++..+.   ..+.++.+++..+...++ ..++.++++|+  +||++|+|+|++|+  
T Consensus         8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~---~la~~~~~~~~~~~~~~l-g~~l~~aaa~~--~Nd~~D~~iD~~~~Rt   81 (306)
T PRK13362          8 LWEASLKDYIQVTKPGIIFGNVISVAGGF---FLASKGHVDPVLMLAAVI-GLSLVVASGCA--LNNCIDRDIDAKMQRT   81 (306)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HHHccCCCCHHHHHHHHH-HHHHHHHHHHH--HhChHHhCcCCCCCCC
Confidence            34667899999999999987777666433   233333345444333333 34567788888  99999999999876  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651           99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  177 (309)
Q Consensus        99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~  177 (309)
                      ++||+|+|++|+++++.++..+..+|+.++....|+....+..++.+ ..+.||   .++||++.+++++.++. |..++
T Consensus        82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt---~~lKr~t~~~~~vgg~~-ga~p~  157 (306)
T PRK13362         82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYS---LYLKRNSVYGTLVGSLS-GAMPP  157 (306)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh---HHHhccCcHhHHHHHHH-HHHHH
Confidence            48999999999999999999988888876655567776655555443 467898   37999999888765554 56678


Q ss_pred             HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651          178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  257 (309)
Q Consensus       178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i  257 (309)
                      +++|.+.++.      .+...+++.+..++|+.+.+...+++|+|||+++|+||+|+++|+|++++.......+....+.
T Consensus       158 l~G~~a~~g~------~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~  231 (306)
T PRK13362        158 VVGYCAVTGQ------FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTA  231 (306)
T ss_pred             HHHHHHHcCC------CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHH
Confidence            8888776542      2344556677888999999999999999999999999999999999998866554444333333


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHhccC
Q 021651          258 LAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERAN-YTKVILATCCTLGMW  309 (309)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~  309 (309)
                      +.......+   ..|.....+....+++.+.+..+++ ++++..++.|++|-|
T Consensus       232 l~~~~g~~g---~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~  281 (306)
T PRK13362        232 LLPLAGYTG---IGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSIL  281 (306)
T ss_pred             HHHHHcccc---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            322211112   3455555555666777666654332 455678899988753

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=1.7e-33  Score=257.55  Aligned_cols=209  Identities=22%  Similarity=0.321  Sum_probs=155.4

Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCcccc
Q 021651           26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAA  105 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~s  105 (309)
                      +|+|+|++||++.....++...   ++..+.++.+++......++ ...+..+++|+  +||++|+|+|++|+|+||+++
T Consensus         3 l~~~~~l~Rp~~~~~~~~~~~~---G~~la~~~~~~~~~~~l~~~-~~~~~~~a~~~--~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          3 LKAFIEITRPHNCILAGIVGIL---GSLVALGGIPPIKTLILIFL-VVYLGCSGGNT--INDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHH---HHHHHcCCCCcHHHHHHHHH-HHHHHHHHHhH--HHhhhhHhccccCCCCCCCCC
Confidence            6789999999998766655543   33344333333433322222 23455577777  999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021651          106 GDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATR  185 (309)
Q Consensus       106 G~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~  185 (309)
                      |++|++++..+..++..+|+.++. ..|+..+.+.+.+...++.||.   ++||++.++|++++...|..+..|.. +. 
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~-~~~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~-a~-  150 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAY-LINIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAI-AV-  150 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHH-Hh-
Confidence            999999999999888888877654 4788877777777788999984   78999888999999999887655443 22 


Q ss_pred             hhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHH
Q 021651          186 AALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNY  253 (309)
Q Consensus       186 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~  253 (309)
                      +    ..++  ..+. ....+++..++++.||+||+|+|+++|+||+|+++|+|+++++...+..+..
T Consensus       151 ~----~~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~  211 (277)
T PRK12883        151 G----RIGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTV  211 (277)
T ss_pred             c----cccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHH
Confidence            1    1122  2222 2335567778899999999999999999999999999999988766544433

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.2e-33  Score=257.59  Aligned_cols=269  Identities=20%  Similarity=0.166  Sum_probs=188.7

Q ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC-----
Q 021651           24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK-----   98 (309)
Q Consensus        24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~-----   98 (309)
                      +++|.+++.+||++.+.+..++..+.+.+.. ..+.++|..+...+++ ..++++++|.  +|||+|+|.|..|+     
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~-~~~~f~~~~~ll~~l~-~~l~~~~~n~--~Ndy~D~~~g~D~~~rt~~   77 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYY-LFRSFDPLLGALMLLG-YFLLHASLNV--FNDYKDYVLDCDHHETTGY   77 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcCHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCccccccCC
Confidence            3578899999999998888887744332222 2234566655444433 3466677777  99999966655554     


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHH
Q 021651           99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAF---NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL  175 (309)
Q Consensus        99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~  175 (309)
                      |+||+++|++|++++.....++..+++.++.+   ..++..+.+.+++.+.++.||.||+++|+++ +||+.+++.+|..
T Consensus        78 ~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~g-lGe~~v~~~~g~~  156 (296)
T PRK05951         78 RQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRW-LGEHLVFYAWSHM  156 (296)
T ss_pred             CCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCC-chHHHHHHHHHHH
Confidence            67999999999999999988877666654432   3466667777788889999999999999886 5999999999998


Q ss_pred             HHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 021651          176 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA  255 (309)
Q Consensus       176 ~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~  255 (309)
                      .++|.++.+++.      .+...+..++...+++......||+||+|+||++|+||+|+++|+|++ ++...+...+|+.
T Consensus       157 ~vlg~~~~~~~~------~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~  229 (296)
T PRK05951        157 LVMGLIYVWLGN------LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVI  229 (296)
T ss_pred             HHHHHHHHHhCc------ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHH
Confidence            899988877642      233445567777788888999999999999999999999999999999 6665666666665


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Q 021651          256 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCT  305 (309)
Q Consensus       256 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (309)
                      .+.........+...+++++.......+.+++...+.++ .+...+-+..
T Consensus       230 ~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~  278 (296)
T PRK05951        230 LQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDP-DEATVQLFML  278 (296)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccc-cHHHHHHHHH
Confidence            544333211111112334444444445556666554333 3344444433

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=2.5e-32  Score=251.76  Aligned_cols=225  Identities=23%  Similarity=0.224  Sum_probs=174.7

Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccch--hhhhh--cCCCC
Q 021651           26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDI--GIDKV--NKPYL  101 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~--~~D~~--n~~~R  101 (309)
                      +|+|++++||++...+.++...+.+.+  ...+.+++..+...+++ ..+..+++|.  +|||+|+  +.|+.  ++|+|
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a--~~~~~~~~~~~ll~~l~-~~l~~~~~n~--~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALA--YWLGSFHPLLALLALLA-ALLLQIATNL--ANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH-HHHHHHHHHH--HHhHHHhccCCCcccccCCcc
Confidence            578999999999988888777543322  12133455544333332 3355667777  9999999  46754  56789


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651          102 PIAAGDLSVQSAWFLVIFFAVTGLLIVAF---NFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  178 (309)
Q Consensus       102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~  178 (309)
                      |+++|++|+++++.++..+..++++++.+   ..++....+.+++.++++.||.||+++|+++ +||+.++..+|...+.
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~g-lge~~~~~~~G~~~~~  156 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTG-LGELFVGVFFGLVIVL  156 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCC-cHHHHHHHHHHHHHHH
Confidence            99999999999998888887766655432   2366666777778888999999999999986 5999999999998888


Q ss_pred             HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651          179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  258 (309)
Q Consensus       179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~  258 (309)
                      +.++.+++      ..+++.++.+++.++++..+++.||++|+|+|+++|+||+|+++|+|+++++...++.++++..+.
T Consensus       157 ~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~  230 (293)
T PRK06080        157 GTYYLQAG------TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVL  230 (293)
T ss_pred             HHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHH
Confidence            87776543      233456667888889999999999999999999999999999999999999999999888887776


Q ss_pred             HHHh
Q 021651          259 AAIY  262 (309)
Q Consensus       259 ~~~~  262 (309)
                      ....
T Consensus       231 ~~~~  234 (293)
T PRK06080        231 LALL  234 (293)
T ss_pred             HHHH
Confidence            5543

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=4.1e-31  Score=245.21  Aligned_cols=231  Identities=15%  Similarity=0.185  Sum_probs=176.1

Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC----CCC
Q 021651           26 RDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK----PYL  101 (309)
Q Consensus        26 l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~----~~R  101 (309)
                      +|.|++.+||++.+.+.+++..+.+.+.. ..+..++..++..+++ ..++++++|+  +|||+|.+.|..++    ++|
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~-~~~~~~~~~~ll~ll~-~~~~~~~~N~--~NDy~D~~~g~D~~~~~~~~~   78 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLY-VAKIFDWLLFLAFMVA-MLAFDIATTA--INNYMDFKKALDTADYVGIGN   78 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hCCCccHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCCcccccCCcc
Confidence            57899999999998888888744332222 2334566554433332 2346778787  99999988766554    578


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651          102 PIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  178 (309)
Q Consensus       102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~  178 (309)
                      ++++|.+|+|+++..+..+..++.+++.   +..++....+++++.+.++.||.||+++||++ +||+.++..+|+.+..
T Consensus        79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~g-LGe~~v~i~~G~~~v~  157 (317)
T PRK13387         79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMP-LGEIFSGLTMGFGIFL  157 (317)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCc-cHHHHHHHHHHHHHHH
Confidence            9999999999999998888877776443   34577777788889999999999999999998 6999999999998888


Q ss_pred             HHHHHHHhhhhcc--------ccc--h----HHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHH
Q 021651          179 GVYYATRAALGLS--------FEW--N----APVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFL  244 (309)
Q Consensus       179 g~~~a~~~~~g~~--------~~~--~----~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l  244 (309)
                      |+++.+++..+..        +++  +    .+.++.++...+.+...+..||++|+|+||++|+||+|+++|+|+++++
T Consensus       158 g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l  237 (317)
T PRK13387        158 LAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL  237 (317)
T ss_pred             HHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence            8888765422100        000  0    0112366777788888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 021651          245 GSGLLLLNYVAAILAAI  261 (309)
Q Consensus       245 ~~~~~~~~~~~~i~~~~  261 (309)
                      ..++..++|+..+....
T Consensus       238 ~~~l~~~a~l~~~~~v~  254 (317)
T PRK13387        238 FAILFYASYLAIAVIVL  254 (317)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998888887765443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=6.2e-30  Score=232.80  Aligned_cols=217  Identities=20%  Similarity=0.188  Sum_probs=155.8

Q ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccc-cccccccchhhhhhcCCCCcccc
Q 021651           27 DACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYI-VGINQIYDIGIDKVNKPYLPIAA  105 (309)
Q Consensus        27 ~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-~~~Nd~~D~~~D~~n~~~Rpl~s  105 (309)
                      |.+++++||++++.+.+++..   +++++ ++.++|..    +.+.+++....... |++|||+|+|.|+.|++++.. .
T Consensus         2 ~~~~~~~rP~~wi~~a~pf~~---g~~la-~~~~~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          2 RQLLLSSRPISWINTAYPFAA---AYLLA-GGEIDWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             hhHHHhcccHHHhccHHHHHH---HHHHH-CCCCChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            678999999999988888874   33344 34445532    22233333333333 468999999999999875432 5


Q ss_pred             cccCHHHHHHHHHHHHHHHHH---H-HHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 021651          106 GDLSVQSAWFLVIFFAVTGLL---I-VAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY  181 (309)
Q Consensus       106 G~ls~~~a~~~~~~~~~~~~~---l-~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~  181 (309)
                      |.+|++|.....+.+..++..   + .....++.++.+..++++.++.||.||+|+|++++.++++.+..+.....+|.+
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~  152 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLV  152 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence            889999874444333322222   1 122337777788888899999999999999999998886554444333556655


Q ss_pred             HHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 021651          182 YATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILA  259 (309)
Q Consensus       182 ~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~  259 (309)
                      +. +    ..  .++..++.+..+++|..+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+..
T Consensus       153 ~~-~----~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~  223 (282)
T PRK13105        153 LA-G----AP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLAL  223 (282)
T ss_pred             Hh-h----cc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 2    11  234455567778889999999999999999999999999999999999999999999888777643

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=7.6e-32  Score=235.72  Aligned_cols=271  Identities=20%  Similarity=0.165  Sum_probs=205.1

Q ss_pred             CCchhHhHHHHHHHHHHHhchhhHHHHHHHHH-HHHHHHHHhCCCc-ccHHHHHHHHHHHHH-HHHHhccccccccccch
Q 021651           15 SDPLLNKVSAFRDACWRFLRPHTIRGTALGSV-ALVARALIENPNL-IKWSLLLKAFSGLLA-LICGNGYIVGINQIYDI   91 (309)
Q Consensus        15 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~-~~~~~a~~~~~~~-~~~~~~~~~l~~~~~-l~~~~~~~~~~Nd~~D~   91 (309)
                      .+++.+..+.++++|.|++|.++++||++..+ +.|..++.+..+. ++..  ...++++++ ++.+++|+  +||..|+
T Consensus        53 sss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~--mL~LFG~GAllMRgAGCt--INDlwDk  128 (353)
T KOG1381|consen   53 SSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIK--MLALFGVGALLMRGAGCT--INDLWDK  128 (353)
T ss_pred             chhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhH--HHHHhcccHHHhccCCce--ehhhhhh
Confidence            34555556778999999999999999987665 5555444443333 3333  335677666 45589999  9999999


Q ss_pred             hhhhhcCC--CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHH
Q 021651           92 GIDKVNKP--YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA  169 (309)
Q Consensus        92 ~~D~~n~~--~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~  169 (309)
                      |+|+..+|  .||+++|++|+++++.+..+...+++.+. .++|+..+.++..++...+.|+    -+||.+++++++.|
T Consensus       129 dlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiL-lqLn~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLg  203 (353)
T KOG1381|consen  129 DLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGIL-LQLNWYSIALGASSLALVITYP----LMKRFTYWPQLVLG  203 (353)
T ss_pred             hhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHH-HhccHHHHHhcccccccEEEee----hhhhcchhHHHHHh
Confidence            99998875  79999999999999999888888887654 3689999888877778888998    69999999998876


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccchHHH-HHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHH
Q 021651          170 TVRGFLLNFGVYYATRAALGLSFEWNAPV-AFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGL  248 (309)
Q Consensus       170 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~  248 (309)
                      ..+++-..+ +|.+..+..      .+.. +-+.+-..+|++.+|++|++||+++|.+.|+|+.+.++|+++-.++ ..+
T Consensus       204 ltfnwGAll-Gw~A~~g~~------~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl-~gf  275 (353)
T KOG1381|consen  204 LTFNWGALL-GWCALKGSL------SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL-SGF  275 (353)
T ss_pred             hhcchhhhh-cchhhcCcc------ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH-hhh
Confidence            655443222 244433221      1211 1133445589999999999999999999999999999999966665 456


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhc
Q 021651          249 LLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  307 (309)
Q Consensus       249 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (309)
                      .......+..+|+...+++  + +..+..+++..+..|...+|.|  |+.+|-++|+-.
T Consensus       276 ~a~~ia~La~aG~~s~q~~--p-yy~~lg~~~~~L~~~i~~vdiD--np~dC~k~f~sN  329 (353)
T KOG1381|consen  276 GAAQIASLAAAGIASDQTW--P-YYAALGAVAARLGSQIYKVDID--NPSDCWKKFKSN  329 (353)
T ss_pred             hHHHHHHHHHhhhccCCCc--h-HHHHHHHHHHHHHhheeeeecC--ChHHHHHHHHhc
Confidence            6677777778888777775  3 4455888899999999999887  888998888754

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=3.3e-29  Score=230.63  Aligned_cols=227  Identities=20%  Similarity=0.215  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhcCC
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKP   99 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n~~   99 (309)
                      ..++++.|++.+||++...++.++..+.+.+.. ..+.++|..++..+++ ..++++..|.  +|||+|++  .|+. ++
T Consensus         8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~-~~~~f~~~~~ll~ll~-~~l~q~~~N~--~NDy~D~~~G~D~~-~~   82 (304)
T PRK07419          8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALG-ETGVFRLDQFITFLLA-AILILAWENL--SNDVFDADTGIDKN-KF   82 (304)
T ss_pred             CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHH-HHHHHHHHHH--HHHHHHHhccCCcc-cc
Confidence            356788899999999999888888744332222 2345666665444332 3356677777  99999987  6774 22


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHH
Q 021651          100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL  176 (309)
Q Consensus       100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~  176 (309)
                      + ...++..++++....+..+..++.+++.   +..+|..+.++.++.+.++.||.||+++|++++ ||+.++..+|...
T Consensus        83 ~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~l~~G~l~  160 (304)
T PRK07419         83 H-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCFLAFGPLA  160 (304)
T ss_pred             c-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHHHHHHHHH
Confidence            2 2334555788888888877766665543   245777777888899999999999999999984 9999999999999


Q ss_pred             HHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHH
Q 021651          177 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA  256 (309)
Q Consensus       177 ~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~  256 (309)
                      ..|.++.+++      .+++..+..++...+.+..+...||++|+|+||++|+||+|+++|+|+++++..++...+|+..
T Consensus       161 v~g~~yv~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~  234 (304)
T PRK07419        161 VAAALYSQTP------SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALE  234 (304)
T ss_pred             HHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHH
Confidence            9999888764      2344556677778888899999999999999999999999999999999999999888888877


Q ss_pred             HHHHH
Q 021651          257 ILAAI  261 (309)
Q Consensus       257 i~~~~  261 (309)
                      +....
T Consensus       235 i~~v~  239 (304)
T PRK07419        235 LLPVL  239 (304)
T ss_pred             HHHHH
Confidence            65444

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=7.4e-29  Score=228.07  Aligned_cols=259  Identities=18%  Similarity=0.167  Sum_probs=161.7

Q ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc------
Q 021651           24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN------   97 (309)
Q Consensus        24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n------   97 (309)
                      +++++|++++||++......++..+.+.+.. .++.+++..+....+ .++++.+++|+  +||++|+|.|++|      
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~-~~g~~~~~~~~l~~l-~~~l~~~ag~~--iND~~D~~~D~~~v~rtm~   78 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFA-NYGGFSWELTIKAAL-IGLFGFEAGFV--LNDYVDRKRDRLDVENTLT   78 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHH-HHHHHHHHHHH--HhhHHHHhcCcchHhhhhh
Confidence            4578999999999875444443322211111 223445544322222 23344566677  9999999999865      


Q ss_pred             ---C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHhhccCCccccccchh--hHHHH
Q 021651           98 ---K--PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFG---PFITSLYCLGLFLGTIYSVPPFRMKRFAV--AAFLI  167 (309)
Q Consensus        98 ---~--~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~--~~~l~  167 (309)
                         |  ++||+++|++|+++++.+..++.++++.++....+   +..+.+...+.++++.|+.    .||.+.  ...+.
T Consensus        79 r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~----~kr~~~~p~~~l~  154 (297)
T PRK12871         79 RYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV----KKRNQKYPVAQLL  154 (297)
T ss_pred             ccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccccccHHHHH
Confidence               3  47999999999999999999988888776543222   2334444556677788972    333211  12222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHH
Q 021651          168 IATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSG  247 (309)
Q Consensus       168 ~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~  247 (309)
                      -+...++ ++++++. .++      +.+...+++.+..++|+.+++++||++|+|+|+++|+||+|+++|++++++....
T Consensus       155 G~~~~~~-~~~~g~~-~~g------~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~  226 (297)
T PRK12871        155 GRTDFTL-FPAAGYL-CYG------QPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG  226 (297)
T ss_pred             HHHHHHH-HHHHHHH-HhC------CCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence            2223333 4555543 222      2234455566778899999999999999999999999999999999999876665


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHH
Q 021651          248 LLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCC  304 (309)
Q Consensus       248 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  304 (309)
                      +..+.+...+  +.....++  ..+....++.+.++.+|.+..+.+  |++.|-+-|
T Consensus       227 ~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f  277 (297)
T PRK12871        227 FTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEK--SQDAGMKIL  277 (297)
T ss_pred             HHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHH
Confidence            5554443332  22223331  122333355666788888877554  555664433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=2.2e-29  Score=231.19  Aligned_cols=252  Identities=23%  Similarity=0.224  Sum_probs=168.1

Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCccc
Q 021651           25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIA  104 (309)
Q Consensus        25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~  104 (309)
                      -+++++++.|+.+.........-....... .+...    ....++ ...++.+++|+  +||++|+|+|++|+|+||.+
T Consensus         3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~-~~~~~----~~~~~~-~~~~~~~~~~~--~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          3 LLFAFLKLFRYGNLLIAALGQSLVYMASLL-LGLPI----SWLLLL-ITFLIAAAVYI--INYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHH-HcChh----HHHHHH-HHHHHHHHHHH--hhhhcCCchhhcCCCchHHH
Confidence            468899999999975443333211110001 11111    111222 23456677777  99999999999999999988


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCcc-ccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651          105 AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPF-RMKRFAVAAFLIIATVRGFLLNFGVYYA  183 (309)
Q Consensus       105 sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~-~lKr~~~~~~l~~~~~~G~~~~~g~~~a  183 (309)
                      +++...+.+..+..+...+++.+.....++..+.+..++.++++.||.||+ ++||.|..||++++..+|..+..+.+..
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~  154 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY  154 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence            554444444333333333343333333478777777788888999999876 5899999999999999998877766654


Q ss_pred             HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021651          184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYM  263 (309)
Q Consensus       184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~  263 (309)
                      .+.      .++...+..++..+++....++++|++|+|+|+++|+||+|+++|+|+++++...++.+.+..++......
T Consensus       155 ~~~------~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~  228 (285)
T PRK12872        155 YQL------TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG  228 (285)
T ss_pred             ccc------ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            432      12344455566777888899999999999999999999999999999999999988888887776554432


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 021651          264 PQAFRRNLMIPAHVILASCLLFQTWLLERA  293 (309)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  293 (309)
                      ...   ..++...+.....+.+++...+++
T Consensus       229 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~  255 (285)
T PRK12872        229 LLP---LLLLVLLLLLAYVLYYIIKLFAAD  255 (285)
T ss_pred             Hhh---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            211   122333333444555565555433

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.97  E-value=6.8e-29  Score=226.98  Aligned_cols=215  Identities=20%  Similarity=0.133  Sum_probs=165.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhc--CCCCcccccccC
Q 021651           34 RPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVN--KPYLPIAAGDLS  109 (309)
Q Consensus        34 Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n--~~~Rpl~sG~ls  109 (309)
                      ||++.+.++.++..+.+.+. .. +.++|..++..+++ ..++++..|.  +|||+|.+  .|+.+  +|+|++++|.+|
T Consensus         1 Rp~tl~~s~~pv~lG~ala~-~~-~~f~~~~~ll~~~~-~~~~q~~~N~--~NDy~D~~~G~D~~~~~~~~r~i~~g~is   75 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAA-WL-HAFVWLVALLALAT-AVLLQILSNY--ANDYGDGIKGSDTDDRIGPLRGVQKGLIT   75 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHH-Hc-CCccHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCChhhccCCcchhcCCCCC
Confidence            89999888888874433222 22 35676665444433 2356677777  99999985  35433  478999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---hHHH------HHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q 021651          110 VQSAWFLVIFFAVTGLLIVAF---NFGP------FITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV  180 (309)
Q Consensus       110 ~~~a~~~~~~~~~~~~~l~~~---~~~~------~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~  180 (309)
                      ++++...+..++.++++++.+   ..++      ....+++++.+.++.||.||+++|+++ +||+.+++.+|...+.|.
T Consensus        76 ~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~g-LGE~~v~i~~G~l~v~g~  154 (284)
T TIGR00751        76 PREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAG-LGDISVLVFFGPLAVLGT  154 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCc-hHHHHHHHHHHHHHHHHH
Confidence            999998888877766655432   2344      345666778888999999999999998 499999999999999999


Q ss_pred             HHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 021651          181 YYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAA  260 (309)
Q Consensus       181 ~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~  260 (309)
                      ++.+++      .+++..++.++...+.+..+...||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+...
T Consensus       155 ~yvq~~------~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~  228 (284)
T TIGR00751       155 QYLQAH------RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFM  228 (284)
T ss_pred             HHHhcC------CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence            887764      23345455667777888899999999999999999999999999999999999988888887665543

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02776 prenyltransferase

Probab=99.97  E-value=4.9e-29  Score=230.97  Aligned_cols=255  Identities=14%  Similarity=0.107  Sum_probs=182.2

Q ss_pred             HhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcC--CCCcccccccC
Q 021651           32 FLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNK--PYLPIAAGDLS  109 (309)
Q Consensus        32 l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~--~~Rpl~sG~ls  109 (309)
                      ++||+......++..   ++++++.++.+++..+...+++ ..+..+++|+  +||++|+|+|++|+  ++||+|+|++|
T Consensus         1 L~Kpri~~lv~~ta~---~G~~lA~~~~~~~~~l~~~~lg-~~l~~aaa~~--~N~i~DrdiD~~m~RT~~RPLpsGris   74 (341)
T PLN02776          1 LSKARLSALVVATSG---AGFVLGSGEAIDLPGLGWTCAG-TMLCAASANT--LNQVFEVKNDSKMKRTMRRPLPSGRIS   74 (341)
T ss_pred             CCcchhHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHHH-HHHHHHHHHH--HHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence            467888655555544   3444554444455544433333 4566778787  99999999999987  48999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021651          110 VQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFL-GTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAAL  188 (309)
Q Consensus       110 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~  188 (309)
                      +++++.++.++.++|+.+..+..|+.+..+.+.+.++ ...||    .+||++.+ |.++|...|..+++++|.+.++.+
T Consensus        75 ~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avtg~~  149 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWAAASGQL  149 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999988888665556788888777665554 56898    59999976 568999999889999999887532


Q ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhh--chhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 021651          189 GLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKL--GVKNIAFLGSGLLLLNYVAAILAAIYMPQA  266 (309)
Q Consensus       189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~--G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~  266 (309)
                            ++..+++.+..++|+........++|+|+|+++|++++|+.-  |+++++.+....+.+..+..+...+... +
T Consensus       150 ------~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~-~  222 (341)
T PLN02776        150 ------DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT-S  222 (341)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-h
Confidence                  344556777888999988888888999999999999999976  4666666665555444333333222111 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651          267 FRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  308 (309)
Q Consensus       267 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (309)
                        +.+++.+.++.+..+.++++..+++  |++..++.|++|.
T Consensus       223 --~~~~~~a~~l~~~~l~~~~~~~~~~--~~~~ar~~F~~Sl  260 (341)
T PLN02776        223 --SPFALEAALLTAYLAASAASFYREP--TNANARKMFHGSL  260 (341)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHH
Confidence              1244566666677777888877543  5667788888764

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.1e-30  Score=229.85  Aligned_cols=266  Identities=18%  Similarity=0.176  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--   99 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~--   99 (309)
                      .+.++|+|++++||+......++..+   +++++.++..++..+...++| +++..+++++  +|+++|+|+|++++|  
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~---g~~lA~~~~~~~~l~~~~~~g-~~L~a~~a~a--~N~~~DrDID~~M~RT~   87 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFA---GMLLAPRGSINPLLLLLTLLG-GALGAGGAGA--FNMYIDRDIDALMERTR   87 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHH---HHHHcccccccHHHHHHHHHH-HHHHHHHHHH--HhhhhhhhHHHhhhhcc
Confidence            46789999999999998666666553   444554344455554444443 4567778787  999999999999985  


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHHH
Q 021651          100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNF  178 (309)
Q Consensus       100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~  178 (309)
                      +||+++|+++++|++.++.++.++|+.+..+..|+....+.+.+++ ..+.||.   .+||++. .|+++|.+.|..+++
T Consensus        88 ~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~-~NiviGg~aGa~Ppl  163 (304)
T COG0109          88 KRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTP-QNIVIGGFAGAMPPL  163 (304)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcc-cceeeeecccccccc
Confidence            8999999999999999999999999988766789988877776655 5678995   8999986 688999999999999


Q ss_pred             HHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651          179 GVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAIL  258 (309)
Q Consensus       179 g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~  258 (309)
                      .+|.+.++..    +  +..+++.+.+++|+-..--.-+++-+||-+++|+..+|+.-|++.+++......++.....++
T Consensus       164 iGwaAvtg~~----~--~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~  237 (304)
T COG0109         164 IGWAAVTGSI----S--LGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLL  237 (304)
T ss_pred             ceeeeeeCCC----C--chHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887633    2  233334444555544333333344455669999999999999999988766554444444333


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhc
Q 021651          259 AAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLG  307 (309)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (309)
                      ...   .|.....|.+...+++..+++..++...+ +|++..++.|++|
T Consensus       238 ~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~-~~~~~A~klF~~S  282 (304)
T COG0109         238 LAL---LGYVGYLYLVVATLLGAWFLALAWKLYRK-DDRKWARKLFKYS  282 (304)
T ss_pred             HHH---hccchhHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence            322   22333456666667777777777777555 5888889999887

>PLN02922 prenyltransferase

Probab=99.97  E-value=5.2e-28  Score=223.88  Aligned_cols=232  Identities=17%  Similarity=0.164  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhcCCC
Q 021651           23 SAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPY  100 (309)
Q Consensus        23 ~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n~~~  100 (309)
                      .+++|.|++.+||++...++.++..+.+.+.. ..+..+|..++..+++ ..++.++.|.  +|||+|.+  .|+.++..
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~-~~g~f~~~~~ll~ll~-~~l~q~~~N~--~NDy~D~~~G~D~~~~~~   87 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYL-QTGLFDARRYGTLLLS-SVLVITWLNL--SNDAYDADTGVDKNKKES   87 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHH-cCCCccHHHHHHHHHH-HHHHHHHHHH--HhhhhHhccCcCcccCCC
Confidence            45678899999999999888888744332222 2245677765444433 2356677777  99999976  57644322


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHH
Q 021651          101 LPIAAGDLSVQSAWFLVIFFAVTGLLIVAFN----FGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLL  176 (309)
Q Consensus       101 Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~----~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~  176 (309)
                      +.-..|  |+++.......+..+++......    .+|..+.++.++.+.++.||.||+++||+++ ||+.++..+|..+
T Consensus        88 ~~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~i~fG~l~  164 (315)
T PLN02922         88 VVNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCFAAFGPLA  164 (315)
T ss_pred             CCCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHHHHHHHHH
Confidence            222344  89999888877776665322221    3577777888899999999999999999985 9999999999988


Q ss_pred             HHHHHHHHHhhhhc-cc---cchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHH
Q 021651          177 NFGVYYATRAALGL-SF---EWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLN  252 (309)
Q Consensus       177 ~~g~~~a~~~~~g~-~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~  252 (309)
                      ..|.|..+++..+. .+   ++++..++.++...+.+.++..+||++|+|+||++|+||+|+++|+|+++++..++...+
T Consensus       165 v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~  244 (315)
T PLN02922        165 TTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLL  244 (315)
T ss_pred             HHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHH
Confidence            88888877542210 11   234556678888899999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHH
Q 021651          253 YVAAILAAI  261 (309)
Q Consensus       253 ~~~~i~~~~  261 (309)
                      |+..+....
T Consensus       245 y~~~i~~v~  253 (315)
T PLN02922        245 YSLLAALGL  253 (315)
T ss_pred             HHHHHHHHH
Confidence            887765543

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=2.8e-28  Score=222.39  Aligned_cols=222  Identities=23%  Similarity=0.181  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCC
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYL  101 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~R  101 (309)
                      .++++|.+++++||+++..+..+.+.+.+.+....++..++..  ..+++ .+++.++.++|++||++|+|+||.|+|++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~--~~ll~-~~~i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA--VALFA-YFLFPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH--HHHHH-HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence            3577889999999999988887777443322111112233322  12222 22344555566699999999999998765


Q ss_pred             c---cc-ccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHH
Q 021651          102 P---IA-AGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLN  177 (309)
Q Consensus       102 p---l~-sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~  177 (309)
                      .   ++ +++.+...   .......+++.+.. ..++....+.+...+..+.||.||+|+|+++..+..+.+..  ..+.
T Consensus        81 ~~r~~~~s~~~~~~~---~~~l~~~l~l~l~~-~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~--~~~~  154 (282)
T PRK12875         81 REREVRYRGDRRVLV---AVALSGALALAFLL-VLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY--ILPG  154 (282)
T ss_pred             CCCCccHHHHHHHHH---HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHH--HHHH
Confidence            3   33 22221111   11112222322222 23343333334557788999999999999998654433332  2455


Q ss_pred             HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 021651          178 FGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAI  257 (309)
Q Consensus       178 ~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i  257 (309)
                      .++|.++++.      .++..+  .+..++|+.+++++||+||+|+|+++|+||+|+++|+|++++++..++.++....+
T Consensus       155 ~~~y~~~tg~------~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~  226 (282)
T PRK12875        155 VAAYALVSGS------LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA  226 (282)
T ss_pred             HHHHHHHcCC------CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence            6777666532      233333  23346899999999999999999999999999999999999998888888777666


Q ss_pred             HHH
Q 021651          258 LAA  260 (309)
Q Consensus       258 ~~~  260 (309)
                      ..+
T Consensus       227 ~~~  229 (282)
T PRK12875        227 AVD  229 (282)
T ss_pred             HHH
Confidence            544

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.97  E-value=1.1e-27  Score=219.03  Aligned_cols=220  Identities=21%  Similarity=0.222  Sum_probs=165.7

Q ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhhcCCCCccccc
Q 021651           29 CWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKVNKPYLPIAAG  106 (309)
Q Consensus        29 ~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~n~~~Rpl~sG  106 (309)
                      |++.+||++...++.++..+.+.+.. ..+.+++..+...+++ ..+++++.|.  +|||+|.+  .|+.+. .+ ...+
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~-~~~~f~~~~~ll~li~-~l~~q~~~N~--~Ndy~D~~~G~D~~~~-~~-~~~~   75 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWG-QGGVFHLDRFALFLIA-AILILAWINL--TNDVFDSDTGIDRFKL-HS-IVNL   75 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHH-HHHHHHHHHH--HHhHHHHhcCCCcccc-CC-cccc
Confidence            67899999999888888744332222 2345666665444333 2356677777  99999986  476432 11 2222


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021651          107 DLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVYYA  183 (309)
Q Consensus       107 ~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a  183 (309)
                      ..++++.......+..++..++.   +..++..+.++.++.+.++.||.||+++|++++ ||+.++..+|...+.|.++.
T Consensus        76 ~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv  154 (285)
T TIGR02235        76 TGSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIAAALYA  154 (285)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHHHHHHH
Confidence            34578877777777666655443   235676777778889999999999999999985 99999999999999999887


Q ss_pred             HHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 021651          184 TRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAI  261 (309)
Q Consensus       184 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~  261 (309)
                      +++      ++++..+..++...+.+.++...||++|+|+|+++|+||+|+++|+|+++++...+...+|+..+....
T Consensus       155 qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~  226 (285)
T TIGR02235       155 QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVI  226 (285)
T ss_pred             hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            764      334555667788888999999999999999999999999999999999999999998888887765443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=1.1e-27  Score=216.23  Aligned_cols=226  Identities=20%  Similarity=0.207  Sum_probs=172.5

Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchh--hhhh----cC
Q 021651           25 FRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIG--IDKV----NK   98 (309)
Q Consensus        25 ~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~--~D~~----n~   98 (309)
                      +.+.|+++.||++.+.+..|++.+.+.+... .+.+++...+..++.+ .++....+.  .|||.|.+  .|.+    .+
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~-~~~f~~~~~ll~Li~~-~~iq~~vN~--~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWY-GKSFNLLVALLALIAA-ILLQILVNL--ANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHH--HHhhhhhhcCCCCCCCcccc
Confidence            4488999999999999999988554433332 2234555444343332 245566666  99999986  5642    22


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHH
Q 021651           99 PYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA---FNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFL  175 (309)
Q Consensus        99 ~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~  175 (309)
                      .++-+...+++++..+...+.+...+.+++.   ...+|..+.+++++.+.++.|+.+|++++|.|+ ||+.++.++|..
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~~~vffG~l  161 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIFVGVFFGPL  161 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHHHHHHHHHH
Confidence            3456777788888887777766655544442   245677788888999999999999999999985 999999999999


Q ss_pred             HHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 021651          176 LNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA  255 (309)
Q Consensus       176 ~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~  255 (309)
                      ...|.++.+++      .+++..+..+++..+.+..+...|++||+|+|+|+||+|+|+++|+++++++...++..+|++
T Consensus       162 ~v~g~~yiqt~------~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~  235 (303)
T COG1575         162 IVLGAYYIQTG------RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA  235 (303)
T ss_pred             HHHHHHHHhcc------cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH
Confidence            99999988764      234456667888888889999999999999999999999999999999999999888888887


Q ss_pred             HHHHHH
Q 021651          256 AILAAI  261 (309)
Q Consensus       256 ~i~~~~  261 (309)
                      .+....
T Consensus       236 ~~~~~i  241 (303)
T COG1575         236 IVIFVI  241 (303)
T ss_pred             HHHHHH
Confidence            765433

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.96  E-value=1.1e-27  Score=216.59  Aligned_cols=217  Identities=12%  Similarity=0.054  Sum_probs=149.6

Q ss_pred             HHHHHHhccccccccccchhhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc--
Q 021651           73 LALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIY--  150 (309)
Q Consensus        73 ~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Y--  150 (309)
                      ++++++++++  +||++|+|+|++|+|+||+|||++|+++++.++..+.++++.+...     + .......++.+.|  
T Consensus        55 vf~~~~~gni--iNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l-----~-~i~i~~~~i~~lY~~  126 (299)
T PRK13592         55 VFGFWMILRI--ADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVL-----F-MNNVGWFLFLYIYGT  126 (299)
T ss_pred             HHHHHHHhHH--HHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHH
Confidence            5677888999  9999999999999999999999999999999998886666655432     2 1122233445566  


Q ss_pred             ---cCCccccccchhhHHHHHHHHHHHHHHHH--HHHHH--HhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhh
Q 021651          151 ---SVPPFRMKRFAVAAFLIIATVRGFLLNFG--VYYAT--RAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEG  223 (309)
Q Consensus       151 ---s~pP~~lKr~~~~~~l~~~~~~G~~~~~g--~~~a~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~  223 (309)
                         +.   ++|+.++.||+.++...|..+..|  .+.+.  ....|.+ ......+.+.+..++.++++|+.+|++| ||
T Consensus       127 lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~l~rEI~KdieD-~g  201 (299)
T PRK13592        127 LMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPSLIWEVCRKIRA-PK  201 (299)
T ss_pred             HHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcC-Cc
Confidence               74   899999999999999999866433  12111  1112211 1112113445677788999999999999 88


Q ss_pred             hHHcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc---hHHH
Q 021651          224 DRKFKISTLATKLGVKNIAFLGSGLLLLNYVAAILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYT---KVIL  300 (309)
Q Consensus       224 D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~  300 (309)
                      |++ |.+|+|+++|.|++.+++.++.+++++.+.+..+  ..++.+.   +...+...++.++..+.-.++..   +++.
T Consensus       202 d~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~--~~g~~g~---~~l~~~~~~~l~~~~~~lk~p~~~~~~~~~  275 (299)
T PRK13592        202 DET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLW--NISHVGV---VVLVLNVIWMTVQFEQFIKSPTRFNIRERV  275 (299)
T ss_pred             ccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHH--HhhhhHH---HHHHHHHHHHHHHHHHHhcCCCcchhhHHH
Confidence            886 5999999999999999999888777776554322  1221111   12223455777777766444322   2477


Q ss_pred             HHHHHhcc
Q 021651          301 ATCCTLGM  308 (309)
Q Consensus       301 ~~~~~~~~  308 (309)
                      +++.|.+|
T Consensus       276 ~~~~ki~~  283 (299)
T PRK13592        276 ERYTYITE  283 (299)
T ss_pred             HHHHHHHH
Confidence            78888776

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.96  E-value=1.2e-26  Score=211.45  Aligned_cols=213  Identities=21%  Similarity=0.204  Sum_probs=145.7

Q ss_pred             HHHHHHHHHhchhhHHHHHHHHHHH-HHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCCCCc
Q 021651           24 AFRDACWRFLRPHTIRGTALGSVAL-VARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLP  102 (309)
Q Consensus        24 ~~l~~~~~l~Rp~~~~~~~l~~~~~-~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~~Rp  102 (309)
                      ...++.+++.+-...+  .++.... .+..++ .+..+++...     .+.+++..++|+  +||++|+|+|++|+|+||
T Consensus        25 ~~~~~~~~~~~ss~~~--a~~a~~~~~~a~lL-~g~~~~~~~~-----~~~~L~~~s~~~--iNd~~D~eiD~IN~P~r~   94 (307)
T PRK13591         25 KFLNATFELLNSSTLV--AFSGALRIHIAFLL-LGLQSSILTC-----IAGGLIIYSVYT--LDRALDSEEDAVNRSELI   94 (307)
T ss_pred             HHHHHHHHHHhhhHHH--HHHHHHHHHHHHHH-hCCCcchHHH-----HHHHHHHHHHHH--HhhhccchhhhccCcccc
Confidence            4567777875555543  2222211 111222 2333454432     134567788888  999999999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCC----c--cccccchhhHHHHHHHHHHHHH
Q 021651          103 IAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVP----P--FRMKRFAVAAFLIIATVRGFLL  176 (309)
Q Consensus       103 l~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~p----P--~~lKr~~~~~~l~~~~~~G~~~  176 (309)
                      .+    +++.+..++.+.+++|+.++. ..++..  +.+++.+.++.||.+    |  +++|+++..||+.++..+|...
T Consensus        95 ~~----s~~~a~~ls~la~llGl~La~-~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i  167 (307)
T PRK13591         95 GS----NKKIGLLVSLLAFLLGTYILA-MDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFI  167 (307)
T ss_pred             cc----CHHHHHHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHH
Confidence            87    788888888888888887654 456543  445677889999974    4  4899999999999999999844


Q ss_pred             HHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccchhhhchhhHHHHHHHHHHHHHHHH
Q 021651          177 NFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVAA  256 (309)
Q Consensus       177 ~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~~~~~~l~~~~~~~~~~~~  256 (309)
                      ..+.   ... .+   .+ .+.....+......++++.+||++|+|+|++.|+||+|+++|+++++++...+++++++..
T Consensus       168 ~g~~---g~~-~~---~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~l  239 (307)
T PRK13591        168 AGIA---GSY-CG---SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVL  239 (307)
T ss_pred             HHHH---Hhh-hh---hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence            3221   110 00   11 1111122222334467778999999999999999999999999999999998888888776


Q ss_pred             HHHHH
Q 021651          257 ILAAI  261 (309)
Q Consensus       257 i~~~~  261 (309)
                      +....
T Consensus       240 i~~~~  244 (307)
T PRK13591        240 GIALI  244 (307)
T ss_pred             HHHHH
Confidence            65443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=4.8e-27  Score=211.60  Aligned_cols=158  Identities=32%  Similarity=0.592  Sum_probs=128.3

Q ss_pred             HHHHhccccccccccchhhhhh--cCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 021651           75 LICGNGYIVGINQIYDIGIDKV--NKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSV  152 (309)
Q Consensus        75 l~~~~~~~~~~Nd~~D~~~D~~--n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~  152 (309)
                      +...+++.  +||+.|+|+|++  |+|+||+++|+++++++...+.++.++++.++ +..++..+.+..+..+.++.|| 
T Consensus        34 ~~~~~~~~--~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~~~~~~~Ys-  109 (257)
T PF01040_consen   34 LLQLAVYL--LNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLA-LLLGPWFLLILLLGFLLGLLYS-  109 (257)
T ss_pred             HHHHHHHH--hhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHh-
Confidence            45566666  999999999999  88999999999999999998888888887766 4567777777777777889999 


Q ss_pred             CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCccc
Q 021651          153 PPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKISTL  232 (309)
Q Consensus       153 pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tl  232 (309)
                      ||+++||++++++++++...+..+..+.+. ..+      +++++.+..+...+++.......+|++|+|+|+++|+||+
T Consensus       110 ~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl  182 (257)
T PF01040_consen  110 PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGG------DPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTL  182 (257)
T ss_pred             hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCC------cccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcch
Confidence            888999999989999998877655555443 221      2234445555565677788888889999999999999999


Q ss_pred             hhhhchhhHHH
Q 021651          233 ATKLGVKNIAF  243 (309)
Q Consensus       233 pv~~G~~~~~~  243 (309)
                      |+++|++++++
T Consensus       183 ~v~~G~~~~~~  193 (257)
T PF01040_consen  183 PVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999999988

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=2e-20  Score=171.53  Aligned_cols=150  Identities=25%  Similarity=0.291  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhc--CC
Q 021651           22 VSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVN--KP   99 (309)
Q Consensus        22 ~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n--~~   99 (309)
                      .++++++|++++||++++...+...+.+.+.  ...+...+.......+ ..++..+++|+  +||++|+|+|++|  ||
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~~~a~--~~~~~~~~~~~llafl-~~~l~~sa~y~--iND~~D~e~Dr~~prk~   81 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAPIFAG--NLLNPGALLKVLLAFV-LFCLASSAVYL--VNDIRDVEADRLHPTKR   81 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHHHHHH--hhcccchHHHHHHHHH-HHHHHHHHHHH--HHhHHHHHhhccCCCCC
Confidence            3567899999999999998877665433211  1111112222222222 23455677777  9999999999997  57


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHHHHHHHHHHHH
Q 021651          100 YLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFG  179 (309)
Q Consensus       100 ~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g  179 (309)
                      +||++||++|+++++.++.++..+|+.++. ..|+.+..+.....+..+.||   +++||++.+++++++..++.-...|
T Consensus        82 ~RPlasG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~~~~~~~~~Ys---~~lK~~~~~d~l~va~~~~lr~~~G  157 (295)
T PRK12324         82 NRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLVYLVLNLAYS---FKLKHQPVLDVFCIASGFVLRAIAG  157 (295)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh---HHhcCCchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999988888887654 467777666666677888999   4899999999988887766544444


Q ss_pred             H
Q 021651          180 V  180 (309)
Q Consensus       180 ~  180 (309)
                      +
T Consensus       158 ~  158 (295)
T PRK12324        158 G  158 (295)
T ss_pred             H
Confidence            3

>PRK08238 hypothetical protein; Validated

Probab=99.86  E-value=8.1e-20  Score=178.08  Aligned_cols=195  Identities=23%  Similarity=0.289  Sum_probs=137.9

Q ss_pred             CCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHHHHHHhccccccccccch
Q 021651           14 GSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENP--NLIKWSLLLKAFSGLLALICGNGYIVGINQIYDI   91 (309)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~   91 (309)
                      .++..+++.+..+++|++++|||++++..+.+++..+    +..  +...+.......+ .++++.+++|+  +||+.|+
T Consensus       179 ~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~p~l~----a~~~~~~~~~~~~~~~f~-~~~l~~sa~~~--~ND~~D~  251 (479)
T PRK08238        179 PVERVFPPRPARLRTWLKALRVHQWAKNLLVFVPLLA----AHQFGDLQALLAALLAFL-AFSLCASAVYI--LNDLLDL  251 (479)
T ss_pred             CcceecCCCchHHHHHHHHhCCcHHHHHHHHHHHHHH----hcccCChHHHHHHHHHHH-HHHHHHHHHHH--HHhhHHh
Confidence            3455555667889999999999999988877664332    221  1111222221222 24466678888  9999999


Q ss_pred             hhhhhc--CCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCCccccccchhhHHHHHH
Q 021651           92 GIDKVN--KPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLFLGTIYSVPPFRMKRFAVAAFLIIA  169 (309)
Q Consensus        92 ~~D~~n--~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~Ys~pP~~lKr~~~~~~l~~~  169 (309)
                      |+||+|  ||+||++||++|+++++.++.++.++|+.+++ ..|+.++.+.+...++.+.||   +++||++.+++++++
T Consensus       252 e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~-~l~~~~~~~~~~~~~~~~~Ys---~~lKr~~~~~~~~la  327 (479)
T PRK08238        252 EADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALAL-ALGPAFLLVLLAYLALTLAYS---LRLKRKVLVDVLTLA  327 (479)
T ss_pred             hhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhh---HHhcCCccccchHHH
Confidence            999999  57999999999999999999999888887665 367766666556677788999   489999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCC
Q 021651          170 TVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKI  229 (309)
Q Consensus       170 ~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~  229 (309)
                      ...++-+..|.. +.    +    .+++.|++ .+.++..+...+.+...|.++++..|.
T Consensus       328 ~~~~lr~~~G~~-a~----~----~~~s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        328 ALYTLRIIAGAA-AI----G----VALSFWLL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHHHHHHHH-Hh----c----cCHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            877765555532 21    1    12333332 233344566678999999999988886

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.56  E-value=8.4e-16  Score=138.30  Aligned_cols=257  Identities=16%  Similarity=0.195  Sum_probs=165.2

Q ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHhccccccccccchhhhhhcCC--CC
Q 021651           24 AFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKP--YL  101 (309)
Q Consensus        24 ~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~Nd~~D~~~D~~n~~--~R  101 (309)
                      ...+.|+|++||+.-+..+++..++   +.++ ++..++..+...-.| -.+..++.+.  +||+.+.+.|.+++|  +|
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~g---Yala-p~p~s~~~l~~~tvG-T~L~S~sANa--iNQ~~E~~~DsqM~RT~~R  164 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTG---YALA-PGPFSFPTLLYTTVG-TGLCSASANA--INQIFEPPFDSQMKRTQNR  164 (409)
T ss_pred             chHHHHHHhcccceEEEEeeecccc---cccc-ccCCCcchhHHHhhh-hHHHHhhhHh--hhhhccCCchhhhHhhccc
Confidence            4678999999999865444444433   3233 333555544322222 1344556566  999999999999875  89


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccCCccccccchhhHHHHHHHHHHHHHHHHH
Q 021651          102 PIAAGDLSVQSAWFLVIFFAVTGLLIVAFNFGPFITSLYCLGLF-LGTIYSVPPFRMKRFAVAAFLIIATVRGFLLNFGV  180 (309)
Q Consensus       102 pl~sG~ls~~~a~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~Ys~pP~~lKr~~~~~~l~~~~~~G~~~~~g~  180 (309)
                      |+++|++|+..|+.++.+..+.|..+.++..|+....++..-++ ...+|+    .+||... .|-++|.+.|.++|+-+
T Consensus       165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAIPPLMG  239 (409)
T KOG1380|consen  165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAIPPLMG  239 (409)
T ss_pred             ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccCCccch
Confidence            99999999999999999888878766665678988877765443 556898    7999874 68889999999999999


Q ss_pred             HHHHHhhhhccccchHHHHHHHHHHHHHHHHH--HHHccCCChhhhHHcCCccchhhhc---hhhHHHHHHHHHHHHHHH
Q 021651          181 YYATRAALGLSFEWNAPVAFITAFVTLFALVI--AVTKDLPDVEGDRKFKISTLATKLG---VKNIAFLGSGLLLLNYVA  255 (309)
Q Consensus       181 ~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~D~e~D~~~G~~Tlpv~~G---~~~~~~l~~~~~~~~~~~  255 (309)
                      |.+.++.+      ++..++++...+.|-+-.  .+-.++  +++..++|.+.+++.=-   .+.+++.+..+..+++..
T Consensus       240 wAAasg~l------~~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~  311 (409)
T KOG1380|consen  240 WAAASGLL------DPGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAA  311 (409)
T ss_pred             hhhhccCC------CccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhccc
Confidence            98766532      345555655555664431  122222  34558999999988643   344455544444444322


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHhcc
Q 021651          256 AILAAIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM  308 (309)
Q Consensus       256 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (309)
                      ... +   ...   ..+-+-...+...+.|..++..++. |.++.++.|++|.
T Consensus       312 ~~~-~---lT~---~wf~i~s~~~na~l~~~afkFY~~~-d~~~aRklF~aSL  356 (409)
T KOG1380|consen  312 PST-D---LTT---WWFAIESLPLNAYLAYLAFKFYRDR-DYHNARKLFFASL  356 (409)
T ss_pred             ccc-C---ccc---ceeeeccccHhHHHHHHHHHHhhcc-chhhHHHHHHHHH
Confidence            211 0   001   1122223344456677777776554 6677788887764

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.26  E-value=2.9e-12  Score=110.63  Aligned_cols=238  Identities=19%  Similarity=0.159  Sum_probs=151.1

Q ss_pred             cccccccCCCcCCCCchhHhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH--HHHHh
Q 021651            2 LQNSASSQIGAAGSDPLLNKVSAFRDACWRFLRPHTIRGTALGSVALVARALIENPNLIKWSLLLKAFSGLLA--LICGN   79 (309)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~--l~~~~   79 (309)
                      .|.|-++||++++-       ..+.+.|+-..||+..-....+...+.+.+ +...+..++.+.. ..++.++  .++.+
T Consensus        44 ~~~rltghp~~sg~-------~~k~~syllalrpws~sasl~p~~lgsala-yrs~~~~d~~l~~-~fl~a~avlavh~a  114 (359)
T KOG4581|consen   44 EQDRLTGHPQRSGT-------FMKCASYLLALRPWSFSASLTPTALGSALA-YRSHGAEDFRLAT-FFLCAFAVLAVHCA  114 (359)
T ss_pred             ccccccCCCCcchH-------HHHHHHHHhhhcccccccccchHhhhhHHH-HhhccccchhHHH-HHHHHhhheeeecc
Confidence            46677788887764       345678999999999876666655322222 1122223333321 1222222  35678


Q ss_pred             ccccccccccch--hhhhhcCCCCcccccccCHHHHHHHHHHHHHHHHHHHH--HhHHHHHH----HHHHHHHHHHhhcc
Q 021651           80 GYIVGINQIYDI--GIDKVNKPYLPIAAGDLSVQSAWFLVIFFAVTGLLIVA--FNFGPFIT----SLYCLGLFLGTIYS  151 (309)
Q Consensus        80 ~~~~~~Nd~~D~--~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~~~~~~~l~~--~~~~~~~~----~l~~~~~~~~~~Ys  151 (309)
                      +++  .|.|+|.  .+|.+...+|.+...-+.+.+...+...+...|.....  ..+.|.-.    ++..-++--.+.|+
T Consensus       115 gnl--vntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflyt  192 (359)
T KOG4581|consen  115 GNL--VNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYT  192 (359)
T ss_pred             cch--hhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEe
Confidence            888  9999996  47876667899888888888888888777666554322  12233211    12222333456888


Q ss_pred             CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHccCCChhhhHHcCCcc
Q 021651          152 VPPFRMKRFAVAAFLIIATVRGFLLNFGVYYATRAALGLSFEWNAPVAFITAFVTLFALVIAVTKDLPDVEGDRKFKIST  231 (309)
Q Consensus       152 ~pP~~lKr~~~~~~l~~~~~~G~~~~~g~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~e~D~~~G~~T  231 (309)
                      .. +.+|+.. +|.+++-+.+|.+..+-+|..+++.+    .|.+..  .++...+-+-++.--|+.+|.|.||++|+-|
T Consensus       193 gg-igfkyia-lgdliili~fgpiavlfaf~~q~g~l----~~~~l~--yaiplalnteailhsnntrd~dndr~agivt  264 (359)
T KOG4581|consen  193 GG-IGFKYIA-LGDLIILILFGPIAVLFAFAIQTGHL----AIFPLG--YAIPLALNTEAILHSNNTRDADNDREAGIVT  264 (359)
T ss_pred             cc-cceEEEe-ccCEEEEEeechHHHHHHHHHhcCce----eEEeeh--heeeeccchHHHhccCCCcccccccccCeEE
Confidence            64 5788875 47777666677655554555555432    232221  2333445566677789999999999999999


Q ss_pred             chhhhchhhHHHHHHHHHHHHHHHHHH
Q 021651          232 LATKLGVKNIAFLGSGLLLLNYVAAIL  258 (309)
Q Consensus       232 lpv~~G~~~~~~l~~~~~~~~~~~~i~  258 (309)
                      +++.+|+..+..++..++.+.|.....
T Consensus       265 lailig~t~s~ily~~llf~py~lf~i  291 (359)
T KOG4581|consen  265 LAILIGPTASHILYAMLLFAPYLLFFI  291 (359)
T ss_pred             EEEeecccHHHHHHHHHHHHHHHHHHH
Confidence            999999998888777776676665543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=93.41  E-value=0.67  Score=42.27  Aligned_cols=35  Identities=17%  Similarity=-0.047  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651          203 AFVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV  238 (309)
Q Consensus       203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~  238 (309)
                      +...+...+-..+||+.|+|.|++. +++=|..-|+
T Consensus        44 l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         44 LTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            3344555566789999999999998 7888888885

>PRK13595 ubiA prenyltransferase; Provisional

Probab=92.13  E-value=3.7  Score=37.94  Aligned_cols=26  Identities=31%  Similarity=0.198  Sum_probs=18.8

Q ss_pred             HHHHHHHHccCCChhhhHHcCCccchh
Q 021651          208 FALVIAVTKDLPDVEGDRKFKISTLAT  234 (309)
Q Consensus       208 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv  234 (309)
                      .......+||+-|.|.|+++-++ -++
T Consensus        59 ~n~~~~giND~fD~eiDa~Npr~-~~i   84 (292)
T PRK13595         59 FNLLIYGLNDLADRETDAASPRK-GGW   84 (292)
T ss_pred             HHHHHHHHHhhhhhhhhccCCCC-CCC
Confidence            33456789999999999876544 344

>PRK13592 ubiA prenyltransferase; Provisional

Probab=92.09  E-value=4.3  Score=37.52  Aligned_cols=44  Identities=27%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHccCCChhhhHHcCCccchhhhch---hhHHHHHHHH
Q 021651          204 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL  248 (309)
Q Consensus       204 ~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~---~~~~~l~~~~  248 (309)
                      ..++.+.+-.++||+.|+|-||. +++.=|+-=|+   +.++..+..+
T Consensus        54 ~vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L  100 (299)
T PRK13592         54 TVFGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI  100 (299)
T ss_pred             HHHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence            34455566778999999999954 57888887775   4444444333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=92.04  E-value=1.6  Score=40.53  Aligned_cols=36  Identities=11%  Similarity=0.034  Sum_probs=22.3

Q ss_pred             cccccccccchhhhhhcCCC-CcccccccCHHHHHHHHHH
Q 021651           81 YIVGINQIYDIGIDKVNKPY-LPIAAGDLSVQSAWFLVIF  119 (309)
Q Consensus        81 ~~~~~Nd~~D~~~D~~n~~~-Rpl~sG~ls~~~a~~~~~~  119 (309)
                      +++-.||..|+|+|+.+.++ -|.   ++.++.+..+...
T Consensus       189 ~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~  225 (304)
T PRK07419        189 LILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPW  225 (304)
T ss_pred             HHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHH
Confidence            33337999999999998653 233   3444444444333

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=91.43  E-value=2.7  Score=38.85  Aligned_cols=24  Identities=29%  Similarity=0.174  Sum_probs=18.2

Q ss_pred             HhccccccccccchhhhhhcCCCC
Q 021651           78 GNGYIVGINQIYDIGIDKVNKPYL  101 (309)
Q Consensus        78 ~~~~~~~~Nd~~D~~~D~~n~~~R  101 (309)
                      ..++++-.|+..|.|+|++|+|+-
T Consensus       188 l~~~Il~aNNirDie~D~~~gk~T  211 (303)
T COG1575         188 LIANILLANNLRDIEEDIRNGKYT  211 (303)
T ss_pred             HHHHHHHhcccccchhHHhcCCcc
Confidence            334444489999999999998754

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=91.39  E-value=2.7  Score=39.20  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=17.4

Q ss_pred             cccccchhhhhhcC-CCCcccccc
Q 021651           85 INQIYDIGIDKVNK-PYLPIAAGD  107 (309)
Q Consensus        85 ~Nd~~D~~~D~~n~-~~Rpl~sG~  107 (309)
                      .||+.|+|.|+.+. |.-|+.-|+
T Consensus       208 ~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        208 LNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHhHhHHHcCCcccceeEcH
Confidence            79999999999874 445655554

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=90.84  E-value=2  Score=39.93  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.3

Q ss_pred             HccCCChhhhHHcCCccchhhhch
Q 021651          215 TKDLPDVEGDRKFKISTLATKLGV  238 (309)
Q Consensus       215 ~~d~~D~e~D~~~G~~Tlpv~~G~  238 (309)
                      +||+.|+|-|+. ++++.|+.=|+
T Consensus        72 iNd~~D~~iD~i-nkp~rPiasG~   94 (308)
T PRK12887         72 LNQLTDIEIDRI-NKPHLPLAAGE   94 (308)
T ss_pred             HhhhhhHHHHhc-CCCCCCcCCcc
Confidence            999999999995 46888877675

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=90.18  E-value=2.2  Score=37.85  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHccCCChhhhHHc-CCccchhhhchhh
Q 021651          206 TLFALVIAVTKDLPDVEGDRKF-KISTLATKLGVKN  240 (309)
Q Consensus       206 ~~~~~~~~~~~d~~D~e~D~~~-G~~Tlpv~~G~~~  240 (309)
                      ++.....+.+||+.|.|.|+.. +++.-|..-|+-+
T Consensus        33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            3555667789999999999996 4556666666543

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=90.13  E-value=4.3  Score=37.07  Aligned_cols=34  Identities=26%  Similarity=0.165  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651          204 FVTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV  238 (309)
Q Consensus       204 ~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~  238 (309)
                      ..++...+-..+||+-|+|.|++.. ++=|+.-|+
T Consensus        45 ~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~   78 (279)
T PRK09573         45 VVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHHhhcccccccccC-CCCCcCCCc
Confidence            3445556667899999999999764 666776665

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=89.97  E-value=15  Score=33.82  Aligned_cols=38  Identities=13%  Similarity=0.033  Sum_probs=24.2

Q ss_pred             cccccchhhhhhcCC-CCcccccccCHHHHHHHHHHHHHHHH
Q 021651           85 INQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFFAVTGL  125 (309)
Q Consensus        85 ~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~~~~~~  125 (309)
                      +|++.|+|.|++.+. .-|.   ++..+.+..+...+..++.
T Consensus       184 in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~  222 (282)
T PRK12875        184 FSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAA  222 (282)
T ss_pred             HHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHH
Confidence            799999999997653 3343   4445555555555544443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.94  E-value=8.7  Score=34.98  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=17.1

Q ss_pred             cccccchhhhhhcC-CCCcccccc
Q 021651           85 INQIYDIGIDKVNK-PYLPIAAGD  107 (309)
Q Consensus        85 ~Nd~~D~~~D~~n~-~~Rpl~sG~  107 (309)
                      +||..|+|.|+.++ +.=|..-|+
T Consensus       180 ~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        180 VFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHhcccchhHHHcCCcccchhcch
Confidence            79999999999875 344555554

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=89.82  E-value=2.5  Score=39.09  Aligned_cols=32  Identities=28%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             HHHHHHHHHccCCChhhhHHc-CCccchhhhch
Q 021651          207 LFALVIAVTKDLPDVEGDRKF-KISTLATKLGV  238 (309)
Q Consensus       207 ~~~~~~~~~~d~~D~e~D~~~-G~~Tlpv~~G~  238 (309)
                      +...+...+||+.|+|.||+. .++.=|..=|+
T Consensus        57 l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~   89 (295)
T PRK12324         57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGV   89 (295)
T ss_pred             HHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence            444556789999999999996 34455555554

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=89.57  E-value=2.5  Score=39.32  Aligned_cols=32  Identities=13%  Similarity=-0.001  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651          206 TLFALVIAVTKDLPDVEGDRKFKISTLATKLGV  238 (309)
Q Consensus       206 ~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~  238 (309)
                      .+...+.+.+||+-|.|.|++.+ ++=|+.-|+
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~   95 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGA   95 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCc
Confidence            34555668899999999998876 455666664

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=89.31  E-value=3.7  Score=37.69  Aligned_cols=37  Identities=24%  Similarity=0.003  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651          203 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK  239 (309)
Q Consensus       203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~  239 (309)
                      +..++...+...+||+.|+|-||+.-+ |.=|..-|+-
T Consensus        54 l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v   91 (289)
T COG0382          54 LAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRV   91 (289)
T ss_pred             HHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence            333455556678999999999999877 5677777763

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=89.23  E-value=2.7  Score=38.81  Aligned_cols=35  Identities=20%  Similarity=0.110  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651          205 VTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK  239 (309)
Q Consensus       205 ~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~  239 (309)
                      .++...+-..+||+.|+|-|++..+ |+-|..-|+-
T Consensus        54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i   89 (289)
T PLN02809         54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL   89 (289)
T ss_pred             HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence            3445555678999999999999876 5788888863

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=89.18  E-value=4.1  Score=37.49  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=22.4

Q ss_pred             ccccccchhhhhhcCCC-CcccccccCHHHHHHHHHHHH
Q 021651           84 GINQIYDIGIDKVNKPY-LPIAAGDLSVQSAWFLVIFFA  121 (309)
Q Consensus        84 ~~Nd~~D~~~D~~n~~~-Rpl~sG~ls~~~a~~~~~~~~  121 (309)
                      -.||..|+|+|+.+.++ -+.   ++.++.+..+...+.
T Consensus       179 ~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~  214 (285)
T TIGR02235       179 FCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI  214 (285)
T ss_pred             HhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence            37999999999998653 232   444555544444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN00012 chlorophyll synthetase; Provisional

Probab=89.00  E-value=6.5  Score=37.68  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=17.8

Q ss_pred             cccccchhhhhhcC-CCCcccccc
Q 021651           85 INQIYDIGIDKVNK-PYLPIAAGD  107 (309)
Q Consensus        85 ~Nd~~D~~~D~~n~-~~Rpl~sG~  107 (309)
                      .||+-|+|.|+... +.-|+.-|+
T Consensus       271 vnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        271 VNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HhhhcchhhHHHcCCcccceeech
Confidence            79999999999864 555665554

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.93  E-value=2.2  Score=39.84  Aligned_cols=41  Identities=20%  Similarity=0.207  Sum_probs=24.7

Q ss_pred             cccccccccchhhhhhcCCC-CcccccccCHHHHHHHHHHHHHHH
Q 021651           81 YIVGINQIYDIGIDKVNKPY-LPIAAGDLSVQSAWFLVIFFAVTG  124 (309)
Q Consensus        81 ~~~~~Nd~~D~~~D~~n~~~-Rpl~sG~ls~~~a~~~~~~~~~~~  124 (309)
                      +++-.||..|+|+|+.+.++ -|.   ++.++.+..+...+..++
T Consensus       204 ~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a  245 (317)
T PRK13387        204 NIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS  245 (317)
T ss_pred             HHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence            33338999999999998653 233   444555555444443333

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=88.60  E-value=2.2  Score=39.10  Aligned_cols=39  Identities=13%  Similarity=0.010  Sum_probs=26.1

Q ss_pred             HHHHHHHHHccCCChhhhHHcCCccchhhhch---hhHHHHHH
Q 021651          207 LFALVIAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGS  246 (309)
Q Consensus       207 ~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~---~~~~~l~~  246 (309)
                      +...+-+.+||+-|.|.|++.+ ++=|+.-|.   |.++.+..
T Consensus        49 l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~   90 (283)
T TIGR01476        49 LGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWL   90 (283)
T ss_pred             HHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHH
Confidence            4455567899999999999776 555665554   44444433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=88.55  E-value=6  Score=36.17  Aligned_cols=36  Identities=19%  Similarity=-0.021  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          203 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      +...+...+-..+||+.|+|-|++..+ +.=|..-|+
T Consensus        43 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~   79 (279)
T PRK12869         43 IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGL   79 (279)
T ss_pred             HHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence            333445556688999999999999765 455665665

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=88.29  E-value=8.9  Score=34.88  Aligned_cols=31  Identities=19%  Similarity=-0.059  Sum_probs=23.6

Q ss_pred             HHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651          207 LFALVIAVTKDLPDVEGDRKFKISTLATKLGV  238 (309)
Q Consensus       207 ~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~  238 (309)
                      +...+-..+||+-|+|.|+.. +++=|+.-|+
T Consensus        48 ~~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   78 (277)
T PRK12883         48 LGCSGGNTINDYFDYEIDKIN-RPNRPLPRGA   78 (277)
T ss_pred             HHHHHHhHHHhhhhHhccccC-CCCCCCCCCc
Confidence            334556789999999999975 4777777665

>PLN02922 prenyltransferase

Probab=87.02  E-value=3.3  Score=38.73  Aligned_cols=36  Identities=14%  Similarity=0.088  Sum_probs=22.9

Q ss_pred             cccccccccchhhhhhcCCCC-cccccccCHHHHHHHHHH
Q 021651           81 YIVGINQIYDIGIDKVNKPYL-PIAAGDLSVQSAWFLVIF  119 (309)
Q Consensus        81 ~~~~~Nd~~D~~~D~~n~~~R-pl~sG~ls~~~a~~~~~~  119 (309)
                      +++-.||..|+|+|++++++- |.   ++.++.+..+...
T Consensus       203 ~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~  239 (315)
T PLN02922        203 LILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHH
Confidence            444489999999999987633 33   3444555444433

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=86.98  E-value=4.9  Score=36.58  Aligned_cols=33  Identities=24%  Similarity=0.014  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHccCCChhhhHHcCCccchhhhch
Q 021651          205 VTLFALVIAVTKDLPDVEGDRKFKISTLATKLGV  238 (309)
Q Consensus       205 ~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv~~G~  238 (309)
                      .++...+-..+||+-|+|-|++. +++=|..-|+
T Consensus        47 ~~l~~~~~~~~Nd~~D~~iD~~~-~~~Rpl~~G~   79 (276)
T PRK12882         47 VFLATGAGNAINDYFDREIDRIN-RPDRPIPSGA   79 (276)
T ss_pred             HHHHHHHHHHHHHHhhhcccccc-CCCCCcCCCC
Confidence            33445556789999999999964 4777877775

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=86.82  E-value=3.7  Score=37.64  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          206 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       206 ~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      ++...+-..+||+.|+|-|++..+ ++=|+.-|+
T Consensus        55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~   88 (285)
T PRK12847         55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGA   88 (285)
T ss_pred             HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCC
Confidence            344555678999999999998665 466777775

>PRK13591 ubiA prenyltransferase; Provisional

Probab=86.70  E-value=8.4  Score=35.84  Aligned_cols=30  Identities=20%  Similarity=0.050  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHccCCChhhhHHcCCccchh
Q 021651          204 FVTLFALVIAVTKDLPDVEGDRKFKISTLAT  234 (309)
Q Consensus       204 ~~~~~~~~~~~~~d~~D~e~D~~~G~~Tlpv  234 (309)
                      ..++.+.+...+||+-|+|.|+. +++..|.
T Consensus        66 ~~~L~~~s~~~iNd~~D~eiD~I-N~P~r~~   95 (307)
T PRK13591         66 AGGLIIYSVYTLDRALDSEEDAV-NRSELIG   95 (307)
T ss_pred             HHHHHHHHHHHHhhhccchhhhc-cCccccc
Confidence            34466777889999999999976 4554444

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=86.30  E-value=26  Score=32.00  Aligned_cols=33  Identities=30%  Similarity=0.288  Sum_probs=20.4

Q ss_pred             cccccchhhhhhcCC-CCcccccccCHHHHHHHHHHH
Q 021651           85 INQIYDIGIDKVNKP-YLPIAAGDLSVQSAWFLVIFF  120 (309)
Q Consensus        85 ~Nd~~D~~~D~~n~~-~Rpl~sG~ls~~~a~~~~~~~  120 (309)
                      .||..|+|.|+.+.+ .-|.   ++..+.+..+...+
T Consensus       187 ~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l  220 (293)
T PRK06080        187 ANNIRDIETDRENGKNTLAV---RLGDKNARRLHAAL  220 (293)
T ss_pred             hcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHH
Confidence            799999999998754 2333   33344444444333

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=86.17  E-value=3.9  Score=37.84  Aligned_cols=35  Identities=20%  Similarity=0.002  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      ..++...+-..+||+.|+|-|++.-+ |.=|+.-|+
T Consensus        52 g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~   87 (294)
T PRK12873         52 GGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGK   87 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence            33455556678999999999998887 588887776

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=85.36  E-value=5.2  Score=36.63  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651          206 TLFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK  239 (309)
Q Consensus       206 ~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~  239 (309)
                      .+...+-..+||+.|+|-|++..+ +.=|+.-|+-
T Consensus        50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i   84 (281)
T TIGR01474        50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAV   84 (281)
T ss_pred             HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCc
Confidence            344455678999999999997765 3567666753

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=84.84  E-value=12  Score=34.41  Aligned_cols=35  Identities=17%  Similarity=0.071  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      ...+...+-..+||+.|+|-|++..+ ++=|+.-|+
T Consensus        52 ~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~   87 (296)
T PRK04375         52 GIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGR   87 (296)
T ss_pred             HHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence            33345555678999999999998654 455655565

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.72  E-value=5.6  Score=36.63  Aligned_cols=34  Identities=15%  Similarity=-0.068  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHccCCChhhhHHcCCc-cchhhhchh
Q 021651          206 TLFALVIAVTKDLPDVEGDRKFKIS-TLATKLGVK  239 (309)
Q Consensus       206 ~~~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~~G~~  239 (309)
                      ++...+-..+||+.|+|-|++..++ .=|..-|+-
T Consensus        56 ~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~i   90 (290)
T PRK12870         56 LATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRL   90 (290)
T ss_pred             HHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCc
Confidence            3444555689999999999876654 667777763

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=84.07  E-value=15  Score=33.84  Aligned_cols=35  Identities=20%  Similarity=0.051  Sum_probs=22.0

Q ss_pred             ccccccchhhhhhcCCCCcccccccCHHHHHHHHHHH
Q 021651           84 GINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIFF  120 (309)
Q Consensus        84 ~~Nd~~D~~~D~~n~~~Rpl~sG~ls~~~a~~~~~~~  120 (309)
                      -.||..|+|.|+.+.++-.  .-++.++.+..+...+
T Consensus       182 ~~Nn~~D~~~D~~~Gk~Tl--~v~lG~~~a~~l~~~l  216 (284)
T TIGR00751       182 NINNLRDIPTDARAGKNTL--AVRLGDARTRMYHQGL  216 (284)
T ss_pred             HHcCcccchhHHHcCCEee--hhhcchHhHHHHHHHH
Confidence            3799999999999865321  1244455554444433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=83.61  E-value=7.7  Score=36.52  Aligned_cols=36  Identities=22%  Similarity=0.105  Sum_probs=24.2

Q ss_pred             HHHHccCCChhhhHHcCCccchhhhch---hhHHHHHHHH
Q 021651          212 IAVTKDLPDVEGDRKFKISTLATKLGV---KNIAFLGSGL  248 (309)
Q Consensus       212 ~~~~~d~~D~e~D~~~G~~Tlpv~~G~---~~~~~l~~~~  248 (309)
                      -..+||+-|+|.|++.+ ||=|+.-|+   +.++.+...+
T Consensus        66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l  104 (331)
T PRK12392         66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIV  104 (331)
T ss_pred             HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHH
Confidence            36799999999999764 566666664   4444444333

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=83.57  E-value=20  Score=32.94  Aligned_cols=36  Identities=11%  Similarity=-0.057  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          203 AFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       203 ~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      +...+...+-..+||+.|+|-|++..+ ++=|..-|+
T Consensus        46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   82 (284)
T PRK12888         46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGA   82 (284)
T ss_pred             HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCC
Confidence            334445555678999999999998864 245666675

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=82.71  E-value=12  Score=34.06  Aligned_cols=37  Identities=8%  Similarity=-0.110  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          202 TAFVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       202 ~~~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      .+..++...+-..+||+.|+|.|++..+ ++=|+.-|+
T Consensus        42 ~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~   79 (282)
T TIGR01475        42 LIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGL   79 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCC
Confidence            3444456667789999999999998742 344555554

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=82.30  E-value=9.1  Score=34.92  Aligned_cols=35  Identities=23%  Similarity=0.039  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      ...+...+-..+||+.|+|-|++..+ ++=|+.-|+
T Consensus        43 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~   78 (280)
T TIGR01473        43 GTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGR   78 (280)
T ss_pred             HHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence            33445556678999999999998554 455665564

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=82.23  E-value=17  Score=33.45  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=15.6

Q ss_pred             cccccchhhhhhcC-CCCccccc
Q 021651           85 INQIYDIGIDKVNK-PYLPIAAG  106 (309)
Q Consensus        85 ~Nd~~D~~~D~~n~-~~Rpl~sG  106 (309)
                      +.++.|+|.|++.. +.-|+-=|
T Consensus       178 iYa~qD~e~D~~~Gv~S~a~~fG  200 (286)
T PRK12895        178 IYVIPDIEYDKINGLKTIMNTYG  200 (286)
T ss_pred             HHHhcchhhHHHcCCCchHHHHC
Confidence            78889999999775 44454444

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=81.97  E-value=17  Score=33.47  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=19.4

Q ss_pred             HhccccccccccchhhhhhcC-CCCcccccc
Q 021651           78 GNGYIVGINQIYDIGIDKVNK-PYLPIAAGD  107 (309)
Q Consensus        78 ~~~~~~~~Nd~~D~~~D~~n~-~~Rpl~sG~  107 (309)
                      ..-..  +|++.|+|.|++.. |.-|+.-|+
T Consensus       181 ~~~~~--~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        181 AGFDL--LYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHH--HHHhccHHHHHHcCCCcccHHhhh
Confidence            34444  79999999998764 555665554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=81.23  E-value=9.5  Score=34.88  Aligned_cols=33  Identities=21%  Similarity=0.141  Sum_probs=24.0

Q ss_pred             HHHHHHHHHccCCChhhhHHcCC-ccchhhhchh
Q 021651          207 LFALVIAVTKDLPDVEGDRKFKI-STLATKLGVK  239 (309)
Q Consensus       207 ~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~~  239 (309)
                      +...+-..+||+.|+|-|++..+ +.=|..-|+-
T Consensus        53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i   86 (282)
T PRK12848         53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAV   86 (282)
T ss_pred             HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCc
Confidence            44455678999999999987665 3567766763

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=80.48  E-value=11  Score=35.05  Aligned_cols=35  Identities=17%  Similarity=0.051  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHccCCChhhhHHcCC-ccchhhhch
Q 021651          204 FVTLFALVIAVTKDLPDVEGDRKFKI-STLATKLGV  238 (309)
Q Consensus       204 ~~~~~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~~G~  238 (309)
                      ..++...+-..+||+.|+|-|++..+ +.=|+.-|+
T Consensus        55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~   90 (306)
T PRK13362         55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGE   90 (306)
T ss_pred             HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCC
Confidence            33445556678999999999998765 356766675

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 55/349 (15%), Positives = 89/349 (25%), Gaps = 105/349 (30%)

Query: 16  DPLLNKVSAFRD-ACWRF------------LRPH---TIRGTALGS-----VALVARA-- 52
           D L N    F      R             LRP     I G   GS        V  +  
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYK 175

Query: 53  -LIENPNLIKW---------SLLLKAFSGLLALICGNGYIVGINQIYDIGIDKVNKPYLP 102
              +    I W           +L+    LL  I  N         +    D  +   L 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---------WTSRSDHSSNIKLR 226

Query: 103 IAAGDLSVQSAWFLVIFFA----VTGLLIV----------AFNFGPFITSLYCLGLFLGT 148
           I     S+Q+   L            LL++          AFN         C  L   T
Sbjct: 227 IH----SIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-------CKILLT-T 272

Query: 149 IYSVPPFRMKRFAVAAFLIIATVRGFLLNFGVY-YATRAALGLSFEW------NAPVAFI 201
                  R K   V  FL  AT     L+             L  ++      + P   +
Sbjct: 273 -------RFK--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 202 TAFVTLFALVIAVTKDLPDV-EGDRKFKISTLATKLGVKNIAFLGSGLLLLNYVA-AILA 259
           T      +++    +D     +  +      L T +    +  L        +   ++  
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSV-- 380

Query: 260 AIYMPQAFRRNLMIPAHVILASCLLFQTWLLERANYTKVILATCCTLGM 308
                  F  +  IP  ++    L+   W     +   V++       +
Sbjct: 381 -------FPPSAHIPTILL---SLI---WFDVIKSDVMVVVNKLHKYSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1rtra_	290	Farnesyl diphosphate synthase (geranyltranstransfe	82.01

>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Isoprenyl diphosphate synthases
domain: Farnesyl diphosphate synthase (geranyltranstransferase)
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.01  E-value=1.7  Score=36.53  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=23.6

Q ss_pred             HHHHHHHHHccCCChh-----------hhHHcCCccchhhhchhhHHH
Q 021651          207 LFALVIAVTKDLPDVE-----------GDRKFKISTLATKLGVKNIAF  243 (309)
Q Consensus       207 ~~~~~~~~~~d~~D~e-----------~D~~~G~~Tlpv~~G~~~~~~  243 (309)
                      -...++++.+|+.|..           .|.+.|+.|+|+.+|.+.+..
T Consensus       208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~  255 (290)
T d1rtra_         208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED  255 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence            4456678888888875           477889999999999887654